chr pos dbsnp_rs ref alt qual filt 1kgp_af_afr 1kgp_af_amr 1kgp_af_eas 1kgp_af_eur 1kgp_af_sas af_1kgp_all av_b_qual av_m_qual read_depth geno_qual strand_bias supp_reads var_amb var_reads genotype
chr1 14604 . A G . PASS 0.1210000 0.1758000 0.0893000 0.1610000 0.2096000 0.1476000 37.0 42.38 10 271.59 0.00 80.00 0 80.00 0/1
chr1 14610 . T C . PASS . . . . . . 37.0 42.38 11 268.58 0.00 72.73 0 72.73 0/1
chr1 14653 rs375086259 C T . PASS . . . . . . 37.0 52.71 31 876.71 13.17 77.42 0 77.42 0/1
chr1 14673 rs369473859 G C . PASS . . . . . . 37.0 61.57 52 99.26 73.08 13.46 0 13.46 0/1
chr1 14677 rs201327123 G A . PASS . . . . . . 36.64 53.94 66 1000.00 12.12 50.00 0 50.00 0/1
chr1 14699 rs372910670 C G . PASS . . . . . . 37.0 58.58 89 196.73 68.73 13.48 0 13.48 0/1
chr1 14815 . C T . PASS . . . . . . 37.0 39.23 122 143.33 9.33 10.66 0 10.66 0/1
chr1 14907 rs79585140 A G . PASS . . . . . . 36.23 60.66 97 1000.00 3.49 96.91 0 96.91 1/1
chr1 14930 rs75454623 A G . PASS 0.4811000 0.5231000 0.4137000 0.5209000 0.4857000 0.4822000 36.6 60.97 122 1000.00 0.80 97.54 0 97.54 1/1
chr1 15118 rs71252250 A G . PASS . . . . . . 37.0 47.75 11 268.58 0.00 72.73 0 72.73 0/1
chr1 15820 rs200482301 G T . PASS 0.4849000 0.2939000 0.6052000 0.2714000 0.3354000 0.4105000 37.0 64.25 72 80.83 52.78 11.11 0 11.11 0/1
chr1 15903 . G GC . PASS 0.0431000 0.4150000 0.8681000 0.4652000 0.5327000 0.4411000 37.0 59.73 11 408.41 0.00 100.00 0 100.00 1/1
chr1 15906 . A G . PASS . . . . . . 37.0 59.73 11 424.00 0.00 100.00 0 100.00 1/1
chr1 16378 rs148220436 T C . PASS . . . . . . 37.0 37.11 11 310.36 0.00 81.82 0 81.82 0/1
chr1 16495 rs141130360 G C . PASS . . . . . . 35.0 28.56 50 528.72 0.89 36.00 0 36.00 0/1
chr1 16534 rs201459529 C T . PASS . . . . . . 36.54 29.31 62 854.94 0.50 41.94 0 41.94 0/1
chr1 16571 rs199676946 G A . PASS . . . . . . 36.47 32.02 120 1000.00 13.89 37.50 0 37.50 0/1
chr1 16949 rs199745162 A C . PASS 0.0227000 0.0144000 0.0000000 0.0159000 0.0143000 0.0139780 37.0 46.89 37 603.88 5.11 48.65 0 48.65 0/1
chr1 16957 rs200658479 G T . PASS . . . . . . 37.0 45.78 37 227.95 10.81 24.32 0 24.32 0/1
chr1 17006 . A G . PASS . . . . . . 37.0 45.29 35 154.57 17.14 20.00 0 20.00 0/1
chr1 17020 rs199740902 G A . PASS . . . . . . 33.57 48.0 28 151.62 28.57 25.00 0 25.00 0/1
chr1 17379 . G A . PASS . . . . . . 37.0 38.0 28 133.87 14.29 21.43 0 21.43 0/1
chr1 17385 rs201535981 G A . PASS . . . . . . 37.0 46.25 28 217.42 14.29 28.57 0 28.57 0/1
chr1 17407 rs372841554 G A . PASS . . . . . . 35.29 54.71 28 163.64 7.14 25.00 0 25.00 0/1
chr1 17614 rs201057270 G A . PASS . . . . . . 37.0 48.0 20 74.41 10.00 20.00 0 20.00 0/1
chr1 252639 rs200683317 A G . PASS . . . . . . 37.0 39.67 19 160.96 0.00 31.58 0 31.58 0/1
chr1 565419 rs55668158 C G . PASS 0.0000000 0.0115000 0.0000000 0.0030000 0.0000000 0.0021965 37.0 69.13 35 484.60 1.90 42.86 0 42.86 0/1
chr1 808922 rs6594027 G A . PASS 0.9554000 0.9942000 0.9841000 1.0000000 0.9918000 0.9826000 36.72 68.32 130 1000.00 0.00 100.00 0 100.00 1/1
chr1 808928 rs11240780 C T . PASS 0.1172000 0.6527000 0.4157000 0.7734000 0.4703000 0.4523000 36.09 68.32 132 1000.00 0.00 100.00 0 100.00 1/1
chr1 809319 . C T . PASS . . . . . . 37.0 49.31 117 283.69 42.84 13.68 0 13.68 0/1
chr1 809345 . CCA CAG . PASS . . . . . . 37.0 44.8 101 56.38 31.29 9.90 0 9.90 0/1
chr1 866511 . C CCCC . PASS . . . . . . 35.73 70.0 59 1000.00 111.86 20.34 0 88.14 0/1
chr1 866511 rs60722469 C CCCCT . PASS 0.0416000 0.1902000 0.1319000 0.2376000 0.1912000 0.1490000 36.15 70.0 59 1000.00 76.71 59.32 0 88.14 0/1
chr1 866523 . T C . PASS . . . . . . 32.2 70.0 30 62.07 166.67 16.67 0 16.67 0/1
chr1 871334 rs4072383 G T . PASS 0.1982000 0.5865000 0.4921000 0.7097000 0.6278000 0.4978000 36.66 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 874950 rs79212057,rs6143081 T TCCCTGGAGGACC . PASS 0.7194000 0.7061000 0.7956000 0.6720000 0.7526000 0.7298000 36.31 70.0 42 394.31 19.05 33.33 0 33.33 0/1
chr1 876499 rs4372192 A G . PASS 0.8737000 0.9207000 0.9206000 0.9503000 0.9151000 0.9131000 36.17 70.0 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 877715 rs6605066 C G . PASS 0.7935000 0.9092000 0.9256000 0.9443000 0.9039000 0.8880000 37.0 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 877831 rs6672356 T C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.46 70.0 112 1000.00 0.00 100.00 0 100.00 1/1
chr1 881627 rs2272757 G A . PASS 0.0643000 0.4380000 0.6240000 0.6332000 0.5706000 0.4419000 36.81 69.95 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 883625 rs4970378 A G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.78 69.91 56 1000.00 2.14 98.21 0 98.21 1/1
chr1 883899 rs72631890 T G . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 36.7 69.83 137 1000.00 0.05 59.12 0 59.12 0/1
chr1 884091 rs60085302 C CACCCTGGTCCCCCTGGTCCCTTTGGCCCTGCACCTGGCTGG . PASS . . . . . . 35.83 70.0 11 162.45 36.36 54.55 0 54.55 0/1
chr1 887560 rs3748595 A C . PASS 0.8290000 0.9092000 0.9206000 0.9483000 0.9172000 0.8998000 36.56 69.26 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 887801 rs3828047 A G . PASS 0.9062000 0.9193000 0.9206000 0.9523000 0.9172000 0.9223000 36.52 69.87 151 1000.00 0.00 100.00 0 100.00 1/1
chr1 888639 rs3748596 T C . PASS 0.9070000 0.9193000 0.9206000 0.9533000 0.9172000 0.9227000 36.84 69.88 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 888659 rs3748597 T C . PASS 0.9070000 0.9193000 0.9206000 0.9533000 0.9172000 0.9227000 36.74 69.87 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 889157 rs369883627 CGA CCC . PASS . . . . . . 36.51 70.0 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 894573 rs13303010 G A . PASS 0.1634000 0.6974000 0.7083000 0.9016000 0.8753000 0.6344000 36.71 70.0 84 1000.00 0.00 100.00 0 100.00 1/1
chr1 896271 rs112905931 C T . PASS 0.0363000 0.4971000 0.3611000 0.6262000 0.5164000 0.3778000 35.59 70.0 17 650.59 0.00 100.00 0 100.00 1/1
chr1 897325 rs4970441 G C . PASS 0.6959000 0.8847000 0.9157000 0.9433000 0.9172000 0.8592000 36.33 70.0 90 1000.00 0.00 100.00 0 100.00 1/1
chr1 897460 . A C . PASS . . . . . . 31.0 70.0 31 84.68 154.84 19.35 0 19.35 0/1
chr1 897465 . A C . PASS . . . . . . 34.6 70.0 30 69.94 166.67 16.67 0 16.67 0/1
chr1 898323 rs6605071 T C . PASS 0.9266000 0.9078000 0.9206000 0.9493000 0.9243000 0.9269000 36.51 69.73 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 899928 rs6677386 G C . PASS 0.5809000 0.8862000 0.9196000 0.9414000 0.9141000 0.8289000 36.1 70.0 80 1000.00 0.00 100.00 0 100.00 1/1
chr1 899936 rs71490529 GGG GTC . PASS . . . . . . 36.66 69.72 73 1000.00 1.60 95.89 0 100.00 1/1
chr1 899942 rs71509448 G A . PASS 0.5106000 0.8646000 0.9216000 0.9155000 0.9141000 0.8025000 35.99 69.72 73 1000.00 2.93 97.26 0 97.26 1/1
chr1 899989 rs6669071 A C . PASS 0.6293000 0.8890000 0.9206000 0.9225000 0.9141000 0.8385000 35.5 70.0 16 604.67 0.00 100.00 0 100.00 1/1
chr1 900001 rs28754834 G A . PASS 0.5280000 0.8761000 0.9127000 0.9423000 0.8967000 0.8089000 36.14 70.0 14 537.29 0.00 100.00 0 100.00 1/1
chr1 900284 rs71490530 GCA GTG . PASS . . . . . . 37.0 70.0 16 632.84 0.00 100.00 0 100.00 1/1
chr1 900298 rs71628926 C G . PASS 0.0045000 0.0173000 0.0000000 0.0308000 0.0061000 0.0109820 35.4 70.0 26 487.66 5.13 57.69 0 57.69 0/1
chr1 900717 rs374537094,rs142545439 CTTAT C . PASS 0.0340000 0.4942000 0.3512000 0.6233000 0.4980000 0.3706000 34.18 70.0 11 383.41 0.00 100.00 0 100.00 1/1
chr1 900730 rs3935066 G A . PASS 0.2005000 0.7061000 0.7083000 0.9095000 0.8773000 0.6474000 35.91 70.0 11 411.98 0.00 100.00 0 100.00 1/1
chr1 908193 . T G . PASS . . . . . . 32.2 70.0 30 57.92 166.67 16.67 0 16.67 0/1
chr1 909419 rs28548431 C T . PASS 0.0598000 0.0778000 0.0962000 0.1839000 0.1452000 0.1112000 36.37 70.0 80 1000.00 7.50 47.50 0 47.50 0/1
chr1 909555 rs2340594 A G . PASS 0.7632000 0.9625000 0.9623000 0.9831000 0.8753000 0.8970000 37.0 70.0 22 883.47 0.00 100.00 0 100.00 1/1
chr1 909768 rs2340593 A G . PASS 0.9985000 1.0000000 1.0000000 1.0000000 1.0000000 0.9996000 36.67 70.0 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 911595 rs7417106 A G . PASS 0.4092000 0.8012000 0.9246000 0.7873000 0.7526000 0.7103000 36.44 70.0 108 1000.00 0.00 100.00 0 100.00 1/1
chr1 912049 rs9803103 T C . PASS 0.2171000 0.6052000 0.7123000 0.5895000 0.5920000 0.5186000 37.0 70.0 14 301.32 23.81 64.29 0 64.29 0/1
chr1 914192 rs2340595 G C . PASS 0.8275000 0.9452000 0.9990000 0.9592000 0.9847000 0.9355000 36.86 69.77 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 914333 rs13302979 C G . PASS 0.2436000 0.6542000 0.8056000 0.6034000 0.6043000 0.5563000 36.04 70.0 42 857.21 0.95 59.52 0 59.52 0/1
chr1 914414 . CGAA C . PASS . . . . . . 36.45 70.0 106 1000.00 3.84 51.89 0 51.89 0/1
chr1 914852 rs13303368 G C . PASS 0.1793000 0.6138000 0.7123000 0.5994000 0.5961000 0.5126000 36.4 69.0 46 648.32 12.61 43.48 0 43.48 0/1
chr1 914876 rs13302983 T C . PASS 0.9418000 0.9539000 0.9990000 0.9592000 0.9847000 0.9669000 37.0 69.55 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 914940 rs13303033 T C . PASS 0.1770000 0.6095000 0.7123000 0.5895000 0.5971000 0.5096000 37.0 70.0 36 694.58 14.44 55.56 0 55.56 0/1
chr1 915227 rs13303355 A G . PASS 0.7640000 0.9409000 0.9990000 0.9592000 0.9847000 0.9181000 36.74 69.86 140 1000.00 0.00 100.00 0 100.00 1/1
chr1 916549 rs6660139 A G . PASS 0.5998000 0.7810000 0.8800000 0.7584000 0.8323000 0.7586000 35.5 70.0 64 1000.00 15.62 50.00 0 50.00 0/1
chr1 916590 rs28566954 G A . PASS 0.0166000 0.0937000 0.0129000 0.1541000 0.0910000 0.0687000 35.8 70.0 38 664.55 6.32 52.63 0 52.63 0/1
chr1 935222 rs2298214 C A . PASS 0.0356000 0.6268000 0.7718000 0.5895000 0.6339000 0.4938000 36.02 69.59 92 1000.00 9.41 53.26 0 53.26 0/1
chr1 943468 rs3121567 T C . PASS 0.6815000 0.9352000 0.9990000 0.9602000 0.9744000 0.8938000 36.56 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 943687 rs2465140 G C . PASS 0.2958000 0.2637000 0.1637000 0.3907000 0.3589000 0.2961000 37.0 70.0 11 97.35 0.00 36.36 0 36.36 0/1
chr1 948846 rs3841266 T TA . PASS 0.5575000 0.9366000 0.9464000 0.9791000 0.9744000 0.8544000 36.37 69.47 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 948870 rs4615788 C G . PASS 0.7194000 0.9308000 0.9990000 0.9573000 0.9765000 0.9030000 36.76 69.59 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 948921 rs15842 T C . PASS 0.7201000 0.9308000 0.9990000 0.9573000 0.9765000 0.9032000 37.0 69.71 68 1000.00 0.00 100.00 0 100.00 1/1
chr1 948929 . GGCCCACA G . PASS 0.0061000 0.0029000 0.0000000 0.0020000 0.0020000 0.0021965 35.35 70.0 66 672.97 10.41 34.85 0 34.85 0/1
chr1 949235 rs2465124 G A . PASS 0.7073000 0.9308000 0.9990000 0.9573000 0.9765000 0.8998000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 949608 rs1921 G A . PASS 0.4387000 0.2709000 0.1845000 0.3926000 0.3558000 0.3389000 37.0 70.0 62 866.95 3.23 41.94 0 41.94 0/1
chr1 949654 rs8997 A G . PASS 0.5083000 0.9179000 0.9266000 0.9453000 0.9622000 0.8257000 36.75 70.0 95 1000.00 0.00 100.00 0 100.00 1/1
chr1 949925 rs2799070 C T . PASS 0.6286000 0.9265000 0.9762000 0.9563000 0.9724000 0.8728000 37.0 70.0 18 716.39 0.00 100.00 0 100.00 1/1
chr1 957967 rs141489152,rs6143083 T TTGTAGTCTGACCTGTGGTCTGAC . PASS 0.6876000 0.9683000 0.9206000 0.9930000 0.9836000 0.8926000 36.62 70.0 16 455.55 12.50 75.00 0 87.50 0/1
chr1 976481 . CGGAGCGGGGCG C . PASS . . . . . . 37.0 70.0 11 253.00 0.00 72.73 0 72.73 0/1
chr1 976514 rs79290478 C A . PASS . . . . . . 37.0 70.0 25 559.46 2.50 64.00 0 68.00 0/1
chr1 977330 rs2799066 T C . PASS 0.6899000 0.9207000 0.9990000 0.9245000 0.9663000 0.8852000 36.57 70.0 82 1000.00 0.61 68.29 0 68.29 0/1
chr1 977570 rs2710876 G A . PASS 0.3896000 0.8963000 0.9722000 0.9175000 0.9581000 0.7941000 37.0 70.0 70 1000.00 17.14 42.86 0 42.86 0/1
chr1 978603 rs35881187 CCT C . PASS 0.0348000 0.6412000 0.8036000 0.5487000 0.5593000 0.4792000 35.72 70.0 64 826.38 11.53 45.31 0 45.31 0/1
chr1 980460 rs3128097 G A . PASS 0.7738000 0.9323000 0.9990000 0.9334000 0.9724000 0.9119000 37.0 70.0 33 452.98 31.17 42.42 0 42.42 0/1
chr1 981087 rs3128098 A G . PASS 0.6225000 0.9179000 0.9990000 0.9304000 0.9724000 0.8694000 36.12 70.0 76 1000.00 8.09 53.95 0 53.95 0/1
chr1 981931 rs2465128 A G . PASS 0.4554000 0.8905000 0.9633000 0.9125000 0.9059000 0.7977000 37.0 70.0 27 262.20 7.41 33.33 0 33.33 0/1
chr1 982444 rs3128099 A G . PASS 0.4894000 0.9049000 0.9722000 0.9185000 0.9581000 0.8219000 37.0 70.0 37 482.71 21.98 40.54 0 40.54 0/1
chr1 982462 rs3128100 T C . PASS 0.9380000 0.9841000 1.0000000 0.9970000 1.0000000 0.9808000 37.0 70.0 23 925.24 0.00 100.00 0 100.00 1/1
chr1 982941 rs3128102 T C . PASS 0.4107000 0.8991000 0.9722000 0.9175000 0.9571000 0.7999000 37.0 70.0 65 941.45 5.60 43.08 0 43.08 0/1
chr1 982994 rs10267 T C . PASS 0.5151000 0.9035000 0.9990000 0.9205000 0.9663000 0.8359000 36.55 70.0 117 1000.00 2.39 45.30 0 45.30 0/1
chr1 984147 . C A . PASS . . . . . . 37.0 70.0 11 97.35 109.09 36.36 0 36.36 0/1
chr1 984171 rs140904842 CAG C . PASS 0.7602000 0.9769000 0.9891000 0.9742000 0.9714000 0.9205000 37.0 70.0 11 130.70 87.27 45.45 0 45.45 0/1
chr1 984302 rs9442391 T C . PASS 0.2405000 0.6614000 0.8294000 0.5636000 0.5654000 0.5457000 35.98 70.0 79 1000.00 2.59 59.49 0 59.49 0/1
chr1 985266 rs2275813 C T . PASS 0.1021000 0.6398000 0.8155000 0.5457000 0.5419000 0.4952000 36.32 70.0 113 1000.00 5.14 46.90 0 46.90 0/1
chr1 985446 rs2275812 G T . PASS 0.0514000 0.4625000 0.3145000 0.4911000 0.4908000 0.3355000 35.17 69.66 116 1000.00 2.51 50.86 0 50.86 0/1
chr1 985449 rs2799067 G A . PASS 0.3585000 0.5692000 0.5407000 0.6183000 0.6094000 0.5256000 35.16 69.53 94 1000.00 4.36 90.43 0 90.43 0/1
chr1 986443 rs2710887 C T . PASS 0.3896000 0.8876000 0.9931000 0.9135000 0.9182000 0.7885000 35.7 69.46 79 1000.00 9.37 46.84 0 46.84 0/1
chr1 987200 rs9803031 C T . PASS 0.4017000 0.8876000 0.9931000 0.9145000 0.9018000 0.7887000 37.0 70.0 66 1000.00 5.05 54.55 0 54.55 0/1
chr1 988932 rs2710871 G C . PASS 0.3835000 0.8775000 0.9931000 0.8708000 0.9100000 0.7754000 36.71 70.0 74 1000.00 9.49 55.41 0 55.41 0/1
chr1 990280 rs4275402 C T . PASS 0.2617000 0.7262000 0.8214000 0.6779000 0.5838000 0.5853000 36.14 70.0 112 1000.00 0.00 100.00 0 100.00 1/1
chr1 1007203 rs4633229 A G . PASS 0.8797000 0.8112000 0.9196000 0.7883000 0.7843000 0.8413000 35.11 70.0 37 613.77 1.71 51.35 0 51.35 0/1
chr1 1007432 rs4333796 G A . PASS 0.2307000 0.6643000 0.7917000 0.5616000 0.5481000 0.5321000 35.52 69.69 111 1000.00 7.10 58.56 0 58.56 0/1
chr1 1019180 rs9442396 T C . PASS 0.4584000 0.6830000 0.7937000 0.5666000 0.5706000 0.6006000 37.0 70.0 10 146.28 20.00 50.00 0 50.00 0/1
chr1 1021415 rs3737728 A G . PASS 0.8109000 0.8055000 0.9177000 0.7386000 0.7883000 0.8127000 35.8 70.0 33 679.59 1.21 60.61 0 60.61 0/1
chr1 1026801 rs4562563 T A . PASS 0.3411000 0.7277000 0.8879000 0.5944000 0.7045000 0.6266000 36.59 70.0 42 1000.00 0.82 69.05 0 69.05 0/1
chr1 1158631 rs6603781 A G . PASS 0.9985000 0.9294000 1.0000000 0.8608000 0.9560000 0.9533000 36.39 69.83 118 1000.00 0.00 100.00 0 100.00 1/1
chr1 1181802 . C T . PASS . . . . . . 35.59 70.0 57 1000.00 0.52 59.65 0 59.65 0/1
chr1 1222690 rs115316182 C T . PASS 0.0053000 0.0317000 0.0010000 0.0586000 0.0153000 0.0208000 36.54 70.0 63 851.93 12.45 41.27 0 41.27 0/1
chr1 1229111 . A ACGCCCCTGCCCTGGAGGCCC . PASS . . . . . . 36.5 70.0 78 1000.00 0.56 93.59 0 97.44 1/1
chr1 1229680 rs2477781 G T . PASS 1.0000000 0.9813000 1.0000000 0.9543000 0.9959000 0.9874000 36.54 70.0 43 907.97 5.55 60.47 0 60.47 0/1
chr1 1239339 rs11260584 T G . PASS 0.3064000 0.8602000 0.8343000 0.9245000 0.8476000 0.7192000 37.0 66.92 13 503.38 0.00 100.00 0 100.00 1/1
chr1 1246004 rs2296474 A G . PASS 0.9803000 0.9813000 0.9127000 0.9672000 0.9172000 0.9519000 36.77 70.0 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 1246256 rs142589758 CGGCTCTGGGTCACAGGT C . PASS 0.0098000 0.0303000 0.0010000 0.0656000 0.0204000 0.0242000 35.42 69.4 154 1000.00 1.57 55.84 0 55.84 0/1
chr1 1247494 rs12103 T C . PASS 0.0923000 0.4424000 0.0188000 0.8121000 0.3415000 0.3193000 37.0 70.0 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 1247578 . T TGGGG . PASS . . . . . . 35.0 70.0 19 630.05 0.00 15.79 0 94.74 0/1
chr1 1247578 rs144812141 T TGG . PASS . . . . . . 34.86 70.0 19 630.05 0.00 36.84 0 94.74 0/1
chr1 1249187 rs12142199 G A . PASS 0.0651000 0.4395000 0.0188000 0.8052000 0.3405000 0.3101000 36.31 70.0 121 1000.00 0.72 99.17 0 100.00 1/1
chr1 1254841 rs10907179 C G . PASS 0.3018000 0.8545000 0.8353000 0.9205000 0.8323000 0.7137000 36.63 69.79 97 1000.00 0.00 100.00 0 100.00 1/1
chr1 1257282 . A C . PASS . . . . . . 37.0 70.0 40 177.15 160.00 20.00 0 20.00 0/1
chr1 1257289 . T C . PASS . . . . . . 35.29 70.0 48 103.45 150.00 14.58 0 14.58 0/1
chr1 1262591 rs2296472 C T . PASS 0.3253000 0.8573000 0.8323000 0.9195000 0.8344000 0.7198000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 1262966 rs307349 C T . PASS 0.4834000 0.8732000 0.8323000 0.9155000 0.8323000 0.7626000 35.75 69.43 106 1000.00 0.00 100.00 0 100.00 1/1
chr1 1263144 rs307350 G A . PASS 0.7935000 0.8991000 0.8313000 0.9235000 0.8344000 0.8498000 36.83 70.0 69 1000.00 0.00 100.00 0 100.00 1/1
chr1 1268847 rs307378 T G . PASS 0.9803000 0.9813000 0.9127000 0.9662000 0.9172000 0.9517000 36.78 70.0 108 1000.00 0.00 100.00 0 100.00 1/1
chr1 1269554 rs307377 T C . PASS 0.9803000 0.9813000 0.9137000 0.9662000 0.9172000 0.9519000 36.38 70.0 155 1000.00 0.04 98.71 0 100.00 1/1
chr1 1273278 rs307370 A G . PASS 0.7088000 0.6585000 0.6230000 0.8350000 0.5777000 0.6843000 36.2 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 1273622 . G C . PASS . . . . . . 34.43 70.0 50 361.64 136.00 28.00 0 28.00 0/1
chr1 1275291 rs11582808 G A . PASS . . . . . . 35.91 70.0 19 357.80 19.14 57.89 0 57.89 0/1
chr1 1276973 rs145370195 G GACAC . PASS 0.7239000 0.7983000 0.7440000 0.8091000 0.6810000 0.7470000 36.67 70.0 76 1000.00 6.63 93.42 0 94.74 1/1
chr1 1277533 rs307362 T C . PASS 1.0000000 0.9986000 0.9990000 0.9940000 0.9980000 0.9980000 36.25 70.0 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 1284490 rs150789461 G A . PASS 0.4902000 0.8746000 0.8234000 0.9155000 0.8333000 0.7630000 36.33 70.0 18 704.37 0.00 100.00 0 100.00 1/1
chr1 1288583 rs3845295 C G . PASS 0.7322000 0.9510000 0.8423000 0.9254000 0.8354000 0.8436000 37.0 70.0 23 921.09 0.00 100.00 0 100.00 1/1
chr1 1288823 rs2296471 A G . PASS 0.4766000 0.8718000 0.8333000 0.9205000 0.8272000 0.7608000 36.4 70.0 20 787.91 0.00 100.00 0 100.00 1/1
chr1 1289367 rs140777846 CTG C . PASS 0.6876000 0.8934000 0.8333000 0.9205000 0.8333000 0.8207000 36.59 69.21 76 1000.00 0.00 100.00 0 100.00 1/1
chr1 1289911 rs4970365 G A . PASS 0.7148000 0.8934000 0.8333000 0.9215000 0.8354000 0.8285000 36.62 70.0 95 1000.00 0.00 100.00 0 100.00 1/1
chr1 1290276 rs75904949 C G . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 69.68 110 1000.00 3.41 57.27 0 57.27 0/1
chr1 1291159 rs201260508 GA G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 32.0 68.95 19 653.50 0.00 100.00 0 100.00 1/1
chr1 1293764 rs34841888 G C . PASS 0.0741000 0.4510000 0.0208000 0.8181000 0.3384000 0.3167000 35.59 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 1296691 rs2765025 C G . PASS 0.9803000 0.9813000 0.9127000 0.9662000 0.9162000 0.9515000 36.8 70.0 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 1310074 rs2765035 C G . PASS 0.5825000 0.9222000 0.9038000 0.9364000 0.9090000 0.8291000 36.7 70.0 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 1323078 rs12729599 A G . PASS 0.0711000 0.4481000 0.0208000 0.8141000 0.3405000 0.3151000 37.0 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 1323143 rs35654872 CCT C . PASS 0.1679000 0.4640000 0.0208000 0.8151000 0.3425000 0.3435000 36.26 70.0 100 1000.00 0.00 100.00 0 100.00 1/1
chr1 1342612 rs2275915 G C . PASS 0.2383000 0.4150000 0.8710000 0.1700000 0.5143000 0.4303000 37.0 70.0 32 577.15 19.12 53.12 0 53.12 0/1
chr1 1387667 rs1781144 C G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.79 69.29 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 1417696 rs819970 C G . PASS 0.9826000 0.8386000 0.9990000 0.6809000 0.9121000 0.8916000 36.29 59.44 182 1000.00 5.00 36.26 0 37.36 0/1
chr1 1420637 rs35871802 C T . PASS 0.0023000 0.0245000 0.0020000 0.0626000 0.0215000 0.0212000 35.54 69.4 225 1000.00 1.67 54.67 0 54.67 0/1
chr1 1423281 rs79849353 G A . PASS . . . . . . 37.0 69.98 123 1000.00 7.36 41.46 0 41.46 0/1
chr1 1458073 rs3118507 A G . PASS 0.0151000 0.1239000 0.0030000 0.2584000 0.0470000 0.0829000 36.45 67.55 150 1000.00 7.38 43.33 0 43.33 0/1
chr1 1469546 rs3128344 G A . PASS 0.7209000 0.8372000 0.9931000 0.7336000 0.9468000 0.8385000 35.09 68.58 138 1000.00 0.00 100.00 0 100.00 1/1
chr1 1509825 rs6666293 A G . PASS 0.9274000 0.5591000 0.8700000 0.3241000 0.7106000 0.7013000 37.0 70.0 68 1000.00 3.73 44.12 0 44.12 0/1
chr1 1534614 rs11552172 T C . PASS 0.1959000 0.3386000 0.2847000 0.2296000 0.3896000 0.2782000 37.0 70.0 24 396.55 0.00 50.00 0 50.00 0/1
chr1 1551927 rs7418389 T C . PASS 0.5378000 0.4813000 0.2054000 0.7058000 0.4366000 0.4770000 36.59 70.0 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 1558792 rs12755088 T C . PASS 0.7057000 0.8674000 0.5516000 0.9364000 0.8599000 0.7736000 36.68 69.89 186 1000.00 0.00 100.00 0 100.00 1/1
chr1 1559466 rs28617190 G A . PASS 0.6044000 0.2810000 0.1438000 0.3718000 0.1953000 0.3403000 37.0 70.0 14 301.32 7.94 64.29 0 64.29 0/1
chr1 1560100 rs28441650 G A . PASS 0.0174000 0.2017000 0.0942000 0.3598000 0.1421000 0.1516000 37.0 70.0 20 241.49 10.00 40.00 0 40.00 0/1
chr1 1562895 rs12735861 C T . PASS 0.3661000 0.6527000 0.5496000 0.5984000 0.6677000 0.5483000 35.74 69.47 78 1000.00 1.89 48.72 0 48.72 0/1
chr1 1563789 rs74892851 C A . PASS 0.0174000 0.2032000 0.0933000 0.3579000 0.1401000 0.1508000 36.59 70.0 62 976.09 4.34 46.77 0 46.77 0/1
chr1 1564194 rs3935032 C T . PASS 0.0174000 0.2032000 0.0942000 0.3579000 0.1401000 0.1510000 35.67 70.0 84 1000.00 6.35 42.86 0 42.86 0/1
chr1 1564712 rs61774907 G T . PASS 0.0287000 0.2939000 0.2520000 0.3638000 0.2485000 0.2206000 35.36 69.09 55 680.75 9.09 40.00 0 40.00 0/1
chr1 1564952 rs112177324 TG T . PASS 0.0182000 0.2046000 0.0933000 0.3588000 0.1360000 0.1506000 36.22 70.0 114 1000.00 4.82 48.25 0 48.25 0/1
chr1 1569318 . C G . PASS . . . . . . 29.0 70.0 12 365.51 0.00 100.00 0 100.00 1/1
chr1 1569322 . G GGGCC . PASS . . . . . . . . 11 398.40 0.00 36.36 0 100.00 0/1
chr1 1569322 . G GCGCC . PASS . . . . . . . . 11 398.40 0.00 27.27 0 100.00 0/1
chr1 1569365 rs145019553 C T . PASS . . . . . . 37.0 70.0 13 95.48 0.00 30.77 0 30.77 0/1
chr1 1571640 rs377058079 G T . PASS 0.0439000 0.3228000 0.2163000 0.4761000 0.2495000 0.2442000 37.0 70.0 13 341.95 0.00 76.92 0 76.92 0/1
chr1 1574019 rs9442412 A G . PASS 0.0582000 0.3012000 0.1954000 0.3559000 0.2505000 0.2169000 37.0 59.67 28 384.50 19.05 42.86 0 42.86 0/1
chr1 1575616 rs80012316 T C . PASS 0.8964000 0.9265000 0.7044000 0.9632000 0.8558000 0.8674000 37.0 59.41 138 1000.00 0.00 100.00 0 100.00 1/1
chr1 1575836 rs72468213 C G . PASS . . . . . . 36.7 60.35 97 1000.00 19.59 41.24 0 41.24 0/1
chr1 1580738 rs149767621 T A . PASS 0.1430000 0.4683000 0.4097000 0.4911000 0.4223000 0.3662000 35.74 58.34 69 1000.00 1.37 55.07 0 55.07 0/1
chr1 1586752 rs11486023 T C . PASS 0.8752000 0.9236000 0.7034000 0.9602000 0.8681000 0.8630000 35.8 68.95 20 775.90 0.00 100.00 0 100.00 1/1
chr1 1588670 rs61774958 G A . PASS . . . . . . 36.54 69.62 79 803.76 24.73 32.91 0 32.91 0/1
chr1 1588717 rs61774959 G A . PASS . . . . . . 36.54 69.31 88 776.67 3.50 29.55 0 29.55 0/1
chr1 1588737 rs61776760 C T . PASS . . . . . . 37.0 69.11 90 490.27 10.88 21.11 0 21.11 0/1
chr1 1588743 rs61776761 A T . PASS . . . . . . 36.25 69.06 94 336.76 4.52 17.02 0 17.02 0/1
chr1 1594837 . C T . PASS . . . . . . 37.0 70.0 12 56.72 66.67 25.00 0 25.00 0/1
chr1 1594840 . TA TCTCGACGGGGAGGTGGACAAGG . PASS . . . . . . . . 10 441.17 15.00 80.00 1 100.00 0/1
chr1 1594840 . TA TCTCGATGGGGAGGTGGACAAGG . PASS . . . . . . . . 10 441.17 60.00 20.00 1 100.00 0/1
chr1 1594841 . A G . PASS . . . . . . 36.0 70.0 12 453.75 0.00 100.00 1 100.00 1/1
chr1 1599812 rs12729295 C T . PASS . . . . . . 37.0 61.11 139 301.03 42.29 12.95 0 12.95 0/1
chr1 1599888 rs2072923 A G . PASS . . . . . . 36.14 60.75 149 664.60 25.70 18.79 0 18.79 0/1
chr1 1599940 rs61776767 C T . PASS . . . . . . 37.0 60.93 72 1000.00 15.11 56.94 0 56.94 0/1
chr1 1599974 rs113499489 A C . PASS . . . . . . 37.0 59.67 58 1000.00 0.63 56.90 0 56.90 0/1
chr1 1599981 rs72634822 C T . PASS 0.0129000 0.1254000 0.0972000 0.2435000 0.1135000 0.1114000 34.23 68.62 57 302.96 6.48 22.81 0 22.81 0/1
chr1 1601015 rs72634825 G A . PASS 0.0129000 0.1297000 0.0972000 0.2515000 0.1166000 0.1142000 37.0 70.0 42 885.37 3.43 59.52 0 59.52 0/1
chr1 1601052 rs72634826 G A . PASS 0.0129000 0.1311000 0.0972000 0.2525000 0.1166000 0.1146000 36.73 70.0 73 1000.00 6.64 61.64 0 61.64 0/1
chr1 1632541 . G GGGGC . PASS . . . . . . . . 13 457.90 0.00 15.38 0 100.00 0/1
chr1 1632541 . G GGCCC . PASS . . . . . . . . 13 457.90 0.00 30.77 0 100.00 0/1
chr1 1632584 . C T . PASS . . . . . . 34.0 70.0 12 86.48 0.00 33.33 0 33.33 0/1
chr1 1633003 . C CCG . PASS . . . . . . 36.45 36.73 29 324.14 21.55 27.59 0 37.93 0/1
chr1 1635004 rs874516 T C . PASS 0.9160000 0.5014000 0.3849000 0.5626000 0.4632000 0.5923000 36.81 66.81 111 1000.00 0.23 55.86 0 55.86 0/1
chr1 1635619 rs2076329 T C . PASS 0.9395000 0.5591000 0.4673000 0.5924000 0.5552000 0.6470000 35.04 69.71 118 1000.00 9.23 45.76 0 46.61 0/1
chr1 1635749 rs55880629 C A . PASS 0.4070000 0.4553000 0.2520000 0.5368000 0.3507000 0.3976000 36.25 67.91 116 926.86 7.11 27.59 0 27.59 0/1
chr1 1636044 rs1059822 G A . PASS 0.9433000 0.5620000 0.4643000 0.5924000 0.5562000 0.6480000 36.12 65.29 111 1000.00 4.83 36.94 0 36.94 0/1
chr1 1636274 rs2179381 C T . PASS 0.0688000 0.4251000 0.2490000 0.5209000 0.3323000 0.2967000 36.4 69.05 45 655.48 0.00 44.44 0 44.44 0/1
chr1 1636330 rs192815888 G A . PASS 0.0000000 0.0043000 0.0000000 0.0060000 0.0000000 0.0017971 37.0 69.3 95 1000.00 1.65 38.95 0 38.95 0/1
chr1 1639046 rs138369165 C G . PASS 0.9342000 0.4942000 0.3353000 0.4911000 0.5031000 0.5795000 36.25 70.0 53 421.41 60.38 28.30 0 30.19 0/1
chr1 1639062 rs149613000 T C . PASS 0.4281000 0.3919000 0.2738000 0.3797000 0.4008000 0.3770000 37.0 70.0 44 252.81 59.09 22.73 0 22.73 0/1
chr1 1647649 rs70937179 C CT . PASS 0.2148000 0.8516000 0.7788000 0.9155000 0.7648000 0.6647000 37.0 70.0 11 294.76 14.14 81.82 0 81.82 0/1
chr1 1647686 rs909823 A C . PASS 0.5113000 0.8804000 0.7788000 0.9215000 0.7843000 0.7520000 37.0 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 1647745 rs72634830 G A . PASS . . . . . . 37.0 70.0 89 367.97 14.61 17.98 0 17.98 0/1
chr1 1647753 rs74045984 C T . PASS . . . . . . 35.74 70.0 101 433.14 18.13 18.81 0 18.81 0/1
chr1 1647778 rs72901773 C G . PASS . . . . . . 36.6 69.67 183 1000.00 1.64 32.79 0 32.79 0/1
chr1 1647814 rs72901775 T C . PASS . . . . . . 36.2 70.0 230 1000.00 8.70 39.13 0 39.13 0/1
chr1 1647871 rs72909014 T C . PASS . . . . . . 36.78 69.81 227 1000.00 1.93 47.58 0 47.58 0/1
chr1 1647893 rs144636354,rs199866927 C CTTTCTT . PASS . . . . . . 36.36 70.0 192 1000.00 1.75 44.27 0 44.27 0/1
chr1 1647928 rs1883424 A G . PASS 0.0545000 0.4366000 0.5357000 0.3986000 0.4335000 0.3474000 36.0 70.0 114 602.88 1.32 21.05 0 21.05 0/1
chr1 1647968 rs146207119 C CAT . PASS . . . . . . 36.37 70.0 45 592.13 3.74 42.22 0 42.22 0/1
chr1 1647971 rs77394327 G A . PASS . . . . . . 36.29 70.0 41 542.21 8.03 41.46 0 41.46 0/1
chr1 1647983 rs74429813 T A . PASS . . . . . . 34.33 70.0 26 237.04 21.37 34.62 0 34.62 0/1
chr1 1647990 rs76519969 C T . PASS . . . . . . 35.5 70.0 22 223.47 22.73 36.36 0 36.36 0/1
chr1 1648002 rs77107184 C T . PASS . . . . . . 37.0 70.0 15 89.46 0.00 26.67 0 26.67 0/1
chr1 1648018 rs79409185 C T . PASS . . . . . . 37.0 70.0 12 98.49 0.00 33.33 0 33.33 0/1
chr1 1648027 rs61776857 T C . PASS 0.5809000 0.8876000 0.7788000 0.9215000 0.7781000 0.7702000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 1650657 rs72909028 C G . PASS . . . . . . 37.0 70.0 11 97.35 0.00 36.36 0 36.36 0/1
chr1 1650787 rs1137003 T C . PASS . . . . . . 36.35 70.0 164 1000.00 3.82 56.10 0 56.10 0/1
chr1 1650797 rs1059830 A G . PASS . . . . . . 35.96 70.0 163 1000.00 2.79 56.44 0 56.44 0/1
chr1 1650801 rs1137004 T C . PASS . . . . . . 36.07 70.0 165 1000.00 5.05 54.55 0 54.55 0/1
chr1 1650807 rs1137005 T C . PASS 0.4992000 0.8790000 0.7788000 0.9215000 0.7781000 0.7474000 36.52 70.0 172 1000.00 5.50 43.60 0 43.60 0/1
chr1 1650832 rs72909030 A G . PASS . . . . . . 36.42 70.0 188 1000.00 4.26 55.32 0 55.32 0/1
chr1 1650845 rs1059831 G A . PASS 0.4992000 0.8790000 0.7788000 0.9215000 0.7781000 0.7474000 36.59 70.0 184 1000.00 2.70 47.28 0 47.28 0/1
chr1 1650920 rs36191908 G A . PASS 0.0000000 0.0014000 0.0000000 0.0000000 0.0000000 0.0001997 37.0 70.0 54 765.71 6.92 42.59 0 42.59 0/1
chr1 1650938 . CGG CAA . PASS . . . . . . 36.65 70.0 39 554.25 1.81 43.59 0 43.59 0/1
chr1 1650942 rs75972011 A G . PASS . . . . . . 35.59 70.0 36 545.25 5.23 47.22 0 47.22 0/1
chr1 1650960 rs72634834 G A . PASS . . . . . . 35.67 70.0 27 250.18 7.41 33.33 0 33.33 0/1
chr1 1650967 rs75384210 T C . PASS . . . . . . 37.0 70.0 24 104.14 13.33 20.83 0 20.83 0/1
chr1 1653004 rs36039898 T C . PASS 0.4985000 0.8790000 0.7788000 0.9225000 0.7781000 0.7474000 36.45 66.77 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 1653028 rs16825265 C T . PASS 0.4985000 0.8790000 0.7788000 0.9225000 0.7781000 0.7474000 36.8 66.87 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 1654038 rs61777494 G A . PASS . . . . . . 37.0 67.22 10 313.51 0.00 90.00 0 90.00 0/1
chr1 1654058 rs61777495 C T . PASS . . . . . . 37.0 65.95 21 841.70 0.00 100.00 0 100.00 1/1
chr1 1654064 rs200615789 A T . PASS 0.3487000 0.8256000 0.7312000 0.8757000 0.7045000 0.6671000 37.0 66.71 21 837.55 0.00 100.00 0 100.00 1/1
chr1 1654065 rs35174499 AGCG A . PASS 0.3487000 0.8256000 0.7312000 0.8757000 0.7045000 0.6671000 35.48 65.72 25 919.41 0.00 100.00 0 100.00 1/1
chr1 1660635 rs2377220 T G . PASS 0.4864000 0.8444000 0.7768000 0.9135000 0.7035000 0.7226000 36.61 69.42 31 1000.00 2.45 93.55 0 100.00 1/1
chr1 1660726 rs1061884 T C . PASS 0.3865000 0.5908000 0.4474000 0.4930000 0.5061000 0.4718000 36.42 69.4 196 1000.00 3.16 42.35 0 42.35 0/1
chr1 1660735 rs1061883 T C . PASS . . . . . . 36.71 69.38 198 1000.00 1.30 42.42 0 42.42 0/1
chr1 1660812 rs1061881 A G . PASS . . . . . . 36.61 68.55 109 922.32 6.98 28.44 0 28.44 0/1
chr1 1663831 rs3817856 C T . PASS 0.0787000 0.3069000 0.3026000 0.4861000 0.3282000 0.2859000 36.37 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 1664019 rs2294488 T C . PASS 0.3858000 0.8386000 0.7659000 0.9076000 0.6779000 0.6869000 36.25 68.75 16 620.83 0.00 100.00 0 100.00 1/1
chr1 1666175 rs61777509 C T . PASS . . . . . . 36.73 56.0 91 1000.00 7.72 49.45 0 49.45 0/1
chr1 1666303 rs114928632 T C . PASS . . . . . . 35.8 60.8 21 310.01 27.62 47.62 0 47.62 0/1
chr1 1669734 rs80140081 G T . PASS 0.0764000 0.3127000 0.3016000 0.4871000 0.3395000 0.2883000 36.73 69.0 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 1669844 . CCA C . PASS 0.0000000 0.0000000 0.0000000 0.0060000 0.0000000 0.0011981 35.39 68.57 52 725.15 12.21 44.23 0 44.23 0/1
chr1 1670570 rs150051592 T C . PASS . . . . . . 37.0 63.07 26 515.83 32.82 57.69 0 57.69 0/1
chr1 1686040 rs4751 G T . PASS 0.0499000 0.2651000 0.2837000 0.4115000 0.3057000 0.2494000 35.97 70.0 117 1000.00 0.00 100.00 0 100.00 1/1
chr1 1686943 rs2072929 T C . PASS 0.2723000 0.3415000 0.3353000 0.4751000 0.3640000 0.3532000 36.68 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 1686962 rs2076327 C T . PASS 0.1846000 0.4078000 0.3145000 0.4930000 0.3804000 0.3419000 36.56 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 1687625 rs34306661 T C . PASS 0.1732000 0.2680000 0.2847000 0.4195000 0.3057000 0.2841000 36.43 70.0 21 829.68 0.00 100.00 0 100.00 1/1
chr1 1687791 rs72634840 C T . PASS 0.0023000 0.0245000 0.0000000 0.0507000 0.0041000 0.0149760 37.0 70.0 40 515.45 0.00 40.00 0 40.00 0/1
chr1 1688096 rs72634841 C T . PASS 0.0000000 0.0029000 0.0000000 0.0129000 0.0000000 0.0029952 35.29 70.0 55 923.51 2.34 50.91 0 50.91 0/1
chr1 1688469 rs4648623 C G . PASS 0.4781000 0.8501000 0.7659000 0.9076000 0.6820000 0.7137000 36.74 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 1688513 rs4648624 G T . PASS 0.1407000 0.2666000 0.2827000 0.4115000 0.3037000 0.2730000 36.68 69.73 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 1689762 rs2235537 T C . PASS 0.3336000 0.2824000 0.4177000 0.4215000 0.3262000 0.3596000 37.0 70.0 107 1000.00 0.00 100.00 0 100.00 1/1
chr1 1696659 rs5021859 A G . PASS 0.4955000 0.8703000 0.8304000 0.9314000 0.6943000 0.7412000 36.82 70.0 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 1749412 rs115507312 T G . PASS 0.0000000 0.0115000 0.0000000 0.0278000 0.0031000 0.0077875 37.0 70.0 15 252.40 15.00 53.33 0 53.33 0/1
chr1 1846582 rs2748987 A G . PASS 0.9516000 0.8401000 0.8145000 0.7903000 0.7863000 0.8439000 37.0 70.0 18 716.39 0.00 100.00 0 100.00 1/1
chr1 1848734 rs941532 A G . PASS 0.9992000 0.9784000 1.0000000 0.9533000 0.9949000 0.9864000 36.2 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 1854321 rs2250833 A G . PASS 0.9516000 0.8314000 0.8125000 0.7753000 0.7873000 0.8395000 36.52 70.0 25 996.76 0.00 100.00 0 100.00 1/1
chr1 1855450 rs28423370 A G . PASS 0.9917000 0.8444000 0.8145000 0.7893000 0.7955000 0.8566000 36.25 68.75 16 620.83 0.00 100.00 0 100.00 1/1
chr1 1856098 rs752965 C T . PASS 0.3888000 0.2104000 0.1766000 0.2396000 0.1278000 0.2404000 36.2 68.67 15 579.06 0.00 100.00 0 100.00 1/1
chr1 1859131 rs4648734 C T . PASS 0.1891000 0.1931000 0.1746000 0.2366000 0.1288000 0.1845000 35.97 70.0 152 1000.00 0.00 100.00 0 100.00 1/1
chr1 1870210 rs2803323 G A . PASS 0.9402000 0.8256000 0.8115000 0.7714000 0.7873000 0.8347000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 1873625 rs12758705 G A . PASS 0.1785000 0.1916000 0.1726000 0.2336000 0.1309000 0.1809000 37.0 70.0 18 716.39 0.00 100.00 0 100.00 1/1
chr1 1887091 rs139735565 CG C . PASS 0.1089000 0.2334000 0.2292000 0.2485000 0.1585000 0.1881000 36.23 69.17 48 1000.00 2.66 97.92 0 100.00 1/1
chr1 1887111 rs3838975 GC G . PASS 0.1059000 0.2320000 0.2292000 0.2475000 0.1585000 0.1869000 35.85 69.38 65 1000.00 0.00 100.00 0 100.00 1/1
chr1 1887245 rs28575980 G A . PASS 0.1044000 0.2190000 0.2292000 0.2316000 0.1575000 0.1813000 37.0 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 1888193 rs3820011 C A . PASS 0.1067000 0.2320000 0.2282000 0.2455000 0.1605000 0.1869000 36.74 70.0 91 1000.00 0.00 100.00 0 100.00 1/1
chr1 1895177 rs7523728 C T . PASS 0.1293000 0.1888000 0.1756000 0.2386000 0.1176000 0.1665000 36.38 70.0 76 1000.00 0.20 51.32 0 51.32 0/1
chr1 1896185 rs13303324 T C . PASS 0.1301000 0.1960000 0.2817000 0.2386000 0.1207000 0.1897000 37.0 70.0 21 322.03 31.43 47.62 0 47.62 0/1
chr1 1896223 rs13303202 C T . PASS 0.1301000 0.1960000 0.2817000 0.2386000 0.1207000 0.1897000 34.88 70.0 37 530.24 7.00 45.95 0 45.95 0/1
chr1 1896440 rs16824585 G A . PASS 0.2489000 0.2032000 0.2718000 0.2276000 0.1145000 0.2167000 36.33 69.63 110 1000.00 4.92 49.09 0 49.09 0/1
chr1 1896553 rs28625839 C T . PASS 0.1256000 0.1888000 0.1786000 0.2386000 0.1176000 0.1661000 35.29 67.14 12 211.79 4.76 58.33 0 58.33 0/1
chr1 1897753 rs4648600 C G . PASS 0.1271000 0.1960000 0.2768000 0.2386000 0.1207000 0.1879000 37.0 70.0 53 722.80 4.97 41.51 0 41.51 0/1
chr1 1898045 rs28712827 G A . PASS 0.1195000 0.1960000 0.2817000 0.2386000 0.1207000 0.1869000 35.91 68.18 23 345.77 3.95 47.83 0 47.83 0/1
chr1 1900024 rs56985589 TG T . PASS 0.1339000 0.1988000 0.3323000 0.2416000 0.1227000 0.2023000 36.67 70.0 37 592.46 15.02 48.65 0 48.65 0/1
chr1 1900106 rs61233860,rs145742571 T TCTC . PASS 0.1324000 0.1945000 0.3284000 0.2376000 0.1196000 0.1991000 36.71 70.0 86 1000.00 3.13 56.98 0 56.98 0/1
chr1 1900232 rs16824588 T C . PASS 0.4312000 0.4380000 0.3125000 0.4314000 0.3262000 0.3878000 36.36 69.29 101 1000.00 1.34 55.45 0 55.45 0/1
chr1 1900332 rs55709963 A G . PASS 0.1293000 0.1744000 0.2728000 0.2167000 0.0910000 0.1745000 37.0 70.0 11 101.50 18.18 36.36 0 36.36 0/1
chr1 1903303 rs4648603 C T . PASS 0.5348000 0.4409000 0.4107000 0.5557000 0.4980000 0.4938000 34.82 70.0 18 348.81 0.00 61.11 0 61.11 0/1
chr1 1916890 rs3795280 C T . PASS 0.6573000 0.2795000 0.4335000 0.3082000 0.3947000 0.4385000 36.65 70.0 69 1000.00 1.62 49.28 0 49.28 0/1
chr1 1918488 rs4350140 A G . PASS 0.9395000 0.4467000 0.5278000 0.4831000 0.6012000 0.6306000 37.0 70.0 31 333.71 4.69 35.48 0 35.48 0/1
chr1 1922303 rs13303195 C T . PASS 0.9281000 0.4568000 0.6032000 0.4970000 0.6145000 0.6496000 35.88 70.0 68 1000.00 6.62 47.06 0 47.06 0/1
chr1 1956362 rs2376805 G A . PASS 0.7935000 0.7349000 0.7381000 0.8280000 0.7648000 0.7756000 36.62 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 1957037 rs2229110 T C . PASS 0.7474000 0.5101000 0.3462000 0.6809000 0.4448000 0.5613000 36.62 70.0 126 1000.00 0.00 100.00 0 100.00 1/1
chr1 1957299 rs3820007 C T . PASS 0.2375000 0.3112000 0.1617000 0.5318000 0.2362000 0.2913000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 1960926 rs28581504 T C . PASS 0.8707000 0.7435000 0.8155000 0.8280000 0.8190000 0.8233000 36.0 70.0 24 942.98 0.00 100.00 0 100.00 1/1
chr1 2005740 rs2459986 T C . PASS 0.9924000 0.8098000 0.9990000 0.8628000 0.9417000 0.9325000 35.65 70.0 71 1000.00 0.00 100.00 0 100.00 1/1
chr1 2036263 rs10797413 G A . PASS 0.4198000 0.5548000 0.6835000 0.6143000 0.5961000 0.5651000 36.31 69.88 173 1000.00 0.00 100.00 0 100.00 1/1
chr1 2121037 . TG T . PASS . . . . . . 34.0 70.0 33 672.77 5.19 63.64 1 63.64 0/1
chr1 2121037 . TGCGGGGGAGCCGAGAGGCGGGGCTGCTG TGCGGGGGAGCCGAGAGGCGGGGCTGCTT . PASS . . . . . . 36.5 70.0 28 669.76 57.14 7.14 1 82.14 0/1
chr1 2121037 . TGCGGGGGAGCCGAGAGGCGGGGCTGCTG T . PASS 0.0825000 0.0245000 0.0198000 0.0239000 0.0061000 0.0351000 34.0 70.0 28 669.76 4.76 75.00 1 82.14 0/1
chr1 2121038 . GC G . PASS . . . . . . 34.0 70.0 33 672.77 5.19 63.64 1 63.64 0/1
chr1 2121039 . CG C . PASS . . . . . . 34.0 70.0 33 672.77 5.19 63.64 1 63.64 0/1
chr1 2121040 . GG G . PASS . . . . . . 34.0 70.0 33 672.77 5.19 63.64 1 63.64 0/1
chr1 2121041 . GG G . PASS . . . . . . 34.0 70.0 33 672.77 5.19 63.64 1 63.64 0/1
chr1 2121042 . GG G . PASS . . . . . . 34.0 70.0 33 672.77 5.19 63.64 1 63.64 0/1
chr1 2121043 . GG G . PASS . . . . . . 34.0 70.0 33 672.77 5.19 63.64 1 63.64 0/1
chr1 2121044 . GA G . PASS . . . . . . 34.0 70.0 33 672.77 5.19 63.64 1 63.64 0/1
chr1 2121045 . AG A . PASS . . . . . . 34.0 70.0 33 672.77 5.19 63.64 1 63.64 0/1
chr1 2121046 . GC G . PASS . . . . . . 34.0 70.0 33 672.77 5.19 63.64 1 63.64 0/1
chr1 2121047 . CC C . PASS . . . . . . 34.0 70.0 33 672.77 0.87 63.64 1 63.64 0/1
chr1 2121048 . CG C . PASS . . . . . . 34.0 70.0 32 675.78 2.38 65.62 1 65.62 0/1
chr1 2121049 . GA G . PASS . . . . . . 34.0 70.0 32 675.78 2.38 65.62 1 65.62 0/1
chr1 2121050 . AG A . PASS . . . . . . 34.0 70.0 32 675.78 2.38 65.62 1 65.62 0/1
chr1 2121051 . GA G . PASS . . . . . . 34.0 70.0 32 675.78 3.87 65.62 1 65.62 0/1
chr1 2121052 . AG A . PASS . . . . . . 34.0 70.0 33 672.77 0.87 63.64 1 63.64 0/1
chr1 2121053 . GG G . PASS . . . . . . 34.0 70.0 34 669.76 5.32 61.76 1 61.76 0/1
chr1 2121054 . GC G . PASS . . . . . . 34.0 70.0 34 669.77 5.32 61.76 1 61.76 0/1
chr1 2121055 . CG C . PASS . . . . . . 34.0 70.0 34 669.76 5.32 61.76 1 61.76 0/1
chr1 2121056 . GG G . PASS . . . . . . 34.0 70.0 33 672.77 0.87 63.64 1 63.64 0/1
chr1 2121057 . GG G . PASS . . . . . . 34.0 70.0 34 669.76 5.32 61.76 1 61.76 0/1
chr1 2121058 . GG G . PASS . . . . . . 34.0 70.0 32 675.78 2.38 65.62 1 65.62 0/1
chr1 2121059 . GC G . PASS . . . . . . 34.0 70.0 33 672.77 6.93 63.64 1 63.64 0/1
chr1 2121060 . CT C . PASS . . . . . . 34.0 70.0 34 669.76 5.32 61.76 1 61.76 0/1
chr1 2121061 . TG T . PASS . . . . . . 34.0 70.0 34 669.76 5.32 61.76 1 61.76 0/1
chr1 2121062 . GC G . PASS . . . . . . 34.0 70.0 34 669.76 5.32 61.76 1 61.76 0/1
chr1 2121063 . CT C . PASS . . . . . . 34.0 70.0 34 669.76 5.32 61.76 1 61.76 0/1
chr1 2121064 . TG T . PASS . . . . . . 34.26 70.0 36 669.76 2.38 58.33 1 63.89 0/1
chr1 2126139 rs6662296 C G . PASS . . . . . . 37.0 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 2234903 rs2256178 C T . PASS 0.2277000 0.3429000 0.3026000 0.1849000 0.3252000 0.2692000 35.2 69.0 28 682.63 7.14 71.43 0 71.43 0/1
chr1 2235656 rs11577387 G A . PASS 0.0197000 0.1037000 0.1062000 0.1650000 0.1247000 0.0984000 35.29 70.0 22 462.08 6.49 63.64 0 63.64 0/1
chr1 2286947 rs1039100 A G . PASS 0.9667000 0.8833000 0.8383000 0.7734000 0.9284000 0.8830000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 2316315 rs2843126 A G . PASS 0.2791000 0.5476000 0.7470000 0.5199000 0.7178000 0.5445000 35.67 70.0 16 283.29 9.72 56.25 0 56.25 0/1
chr1 2327815 rs2840532 C T . PASS 0.4357000 0.5706000 0.4802000 0.6163000 0.5613000 0.5242000 36.05 70.0 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 2328714 rs2645081 A G . PASS 0.6664000 0.8170000 0.9048000 0.8946000 0.7935000 0.8059000 36.61 69.35 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 2332391 rs12037485 C T . PASS 0.2678000 0.4539000 0.2550000 0.4483000 0.3344000 0.3403000 34.71 70.0 45 661.23 5.71 46.67 0 46.67 0/1
chr1 2337277 rs11586985 C T . PASS 0.0068000 0.0778000 0.1151000 0.1272000 0.1002000 0.0809000 35.29 70.0 73 869.34 13.41 38.36 0 38.36 0/1
chr1 2338126 rs3795269 C A . PASS 0.2859000 0.4539000 0.2530000 0.4274000 0.3272000 0.3391000 36.2 70.0 51 1000.00 3.14 58.82 0 58.82 0/1
chr1 2340073 rs76530653 C G . PASS 0.0000000 0.0014000 0.0000000 0.0020000 0.0000000 0.0005990 36.79 69.66 131 1000.00 0.42 44.27 0 44.27 0/1
chr1 2340200 rs2494598 T C . PASS 0.5688000 0.7666000 0.7282000 0.7913000 0.7014000 0.6989000 37.0 70.0 116 1000.00 4.29 67.24 0 67.24 0/1
chr1 2409276 rs12049628 A G . PASS 0.5726000 0.6571000 0.7907000 0.6143000 0.6963000 0.6607000 37.0 70.0 12 140.26 13.33 41.67 0 41.67 0/1
chr1 2409892 rs12727342 A G . PASS 0.7352000 0.6671000 0.7897000 0.6292000 0.6922000 0.7071000 36.16 70.0 84 1000.00 0.17 51.19 0 51.19 0/1
chr1 2411451 rs10797428 A G . PASS 0.5658000 0.6585000 0.7758000 0.6203000 0.6922000 0.6565000 36.33 70.0 52 1000.00 2.99 69.23 0 69.23 0/1
chr1 2418935 rs10910082 C T . PASS 0.4992000 0.6398000 0.7698000 0.6083000 0.6575000 0.6260000 37.0 67.14 17 208.76 35.29 41.18 0 41.18 0/1
chr1 2420590 rs10752744 T C . PASS 0.9160000 0.8343000 0.9871000 0.7594000 0.8200000 0.8688000 36.29 70.0 30 575.32 4.31 56.67 0 56.67 0/1
chr1 2420913 rs6668720 A G . PASS 0.5983000 0.6729000 0.7907000 0.6521000 0.6789000 0.6739000 37.0 70.0 30 420.25 9.23 43.33 0 43.33 0/1
chr1 2422614 rs2477699 G A . PASS 0.6694000 0.7550000 0.9107000 0.7137000 0.7372000 0.7520000 35.67 70.0 72 842.59 12.04 37.50 0 37.50 0/1
chr1 2433468 . G A . PASS . . . . . . 37.0 70.0 16 128.22 22.50 31.25 0 31.25 0/1
chr1 2433894 rs55874156 G A . PASS 0.0008000 0.0086000 0.0000000 0.0209000 0.0072000 0.0069888 36.54 70.0 121 1000.00 7.44 42.98 0 42.98 0/1
chr1 2433900 rs12736998 C T . PASS 0.1793000 0.4582000 0.4851000 0.5229000 0.3395000 0.3798000 36.3 69.42 123 1000.00 5.73 56.10 0 56.10 0/1
chr1 2444414 rs7535528 G A . PASS 0.0136000 0.2983000 0.3046000 0.3867000 0.2137000 0.2256000 36.45 70.0 140 1000.00 5.71 47.14 0 47.14 0/1
chr1 2452569 rs2985862 T C . PASS 0.9100000 0.8084000 0.9563000 0.7316000 0.7904000 0.8460000 36.38 69.49 88 1000.00 6.00 44.32 0 44.32 0/1
chr1 2488153 rs4870 A G . PASS 0.7837000 0.5303000 0.5397000 0.4682000 0.6748000 0.6148000 36.66 70.0 83 1000.00 4.96 42.17 0 42.17 0/1
chr1 2491205 rs2234161 C T . PASS 0.8313000 0.5605000 0.5774000 0.4811000 0.6861000 0.6440000 35.29 70.0 36 139.56 43.65 19.44 0 19.44 0/1
chr1 2494330 rs2234167 G A . PASS 0.0991000 0.0937000 0.0556000 0.1471000 0.1738000 0.1138000 36.23 70.0 72 1000.00 0.36 43.06 0 43.06 0/1
chr1 2494785 rs8725 G A . PASS 0.7776000 0.5591000 0.5734000 0.4930000 0.6902000 0.6320000 35.91 70.0 16 366.84 11.36 68.75 0 68.75 0/1
chr1 2518186 rs10752746 A G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 37.0 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 2522392 rs2296443 G A . PASS 0.0144000 0.2277000 0.2927000 0.3250000 0.1881000 0.1963000 36.68 70.0 65 1000.00 6.57 56.92 0 56.92 0/1
chr1 2525176 rs72644679 A C . PASS . . . . . . 37.0 70.0 19 365.66 4.78 57.89 0 57.89 0/1
chr1 2527678 rs2260976 A G . PASS 0.3843000 0.5533000 0.4712000 0.6899000 0.4642000 0.5022000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 2528133 rs2843401 T C . PASS 0.3835000 0.5519000 0.4722000 0.6889000 0.4632000 0.5016000 36.51 70.0 97 1000.00 0.00 100.00 0 100.00 1/1
chr1 2535570 . G C . PASS . . . . . . 34.0 70.0 35 168.17 148.57 22.86 0 22.86 0/1
chr1 2560735 rs4648657 A G . PASS 0.4402000 0.5490000 0.4702000 0.6909000 0.4714000 0.5178000 36.86 70.0 85 1000.00 0.00 100.00 0 100.00 1/1
chr1 2560882 rs4648658 G A . PASS 0.2693000 0.5101000 0.4633000 0.6720000 0.4683000 0.4615000 36.58 70.0 86 1000.00 0.00 100.00 0 100.00 1/1
chr1 2560903 rs4648659 T G . PASS 0.4334000 0.5519000 0.4683000 0.6909000 0.4703000 0.5158000 36.67 70.0 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 2573199 rs4648662 A G . PASS 0.9818000 0.8847000 0.9931000 0.8628000 0.9202000 0.9347000 36.52 70.0 100 1000.00 0.00 100.00 0 100.00 1/1
chr1 2700117 rs4648502 C G . PASS 0.0946000 0.3905000 0.3552000 0.4404000 0.2372000 0.2853000 36.13 70.0 105 1000.00 3.29 52.38 0 52.38 0/1
chr1 2938265 rs4576609 C T . PASS 0.1324000 0.2406000 0.3978000 0.1610000 0.1074000 0.2017000 37.0 70.0 42 509.43 13.69 38.10 0 38.10 0/1
chr1 2938407 rs4013154 CAGA C . PASS 0.0106000 0.2176000 0.1925000 0.1581000 0.0460000 0.1124000 35.97 70.0 73 1000.00 1.45 49.32 0 49.32 0/1
chr1 2938569 rs35806103 C T . PASS 0.1074000 0.0418000 0.0000000 0.0149000 0.0000000 0.0371000 36.14 70.0 70 902.38 10.00 40.00 0 40.00 0/1
chr1 2938697 rs3795262 T G . PASS 0.1657000 0.2435000 0.3958000 0.1630000 0.0982000 0.2091000 36.22 70.0 104 1000.00 0.00 42.31 0 44.23 0/1
chr1 2938924 rs72629486 T G . PASS 0.0613000 0.0375000 0.0000000 0.0149000 0.0000000 0.0244000 36.33 70.0 86 1000.00 0.39 41.86 0 41.86 0/1
chr1 2998934 rs2742686 T C . PASS 0.9917000 0.8963000 0.9683000 0.8479000 0.9663000 0.9399000 36.4 69.0 35 685.58 10.00 57.14 0 57.14 0/1
chr1 2998998 rs10909873 C G . PASS 0.3540000 0.5922000 0.6607000 0.6223000 0.6738000 0.5651000 37.0 69.61 94 1000.00 6.22 54.26 0 54.26 0/1
chr1 2999068 rs2981886 T G . PASS 0.4622000 0.6470000 0.8601000 0.6282000 0.7239000 0.6524000 37.0 70.0 74 1000.00 0.41 54.05 0 54.05 0/1
chr1 3313282 rs7535965 G A . PASS 0.3434000 0.2147000 0.0079000 0.3817000 0.1503000 0.2280000 37.0 70.0 18 716.39 0.00 100.00 0 100.00 1/1
chr1 3319615 . CT C . PASS . . . . . . 37.0 70.0 54 254.92 5.05 20.37 0 20.37 0/1
chr1 3319618 . CC C . PASS . . . . . . 37.0 70.0 53 257.92 6.52 20.75 1 20.75 0/1
chr1 3319618 . CCTCCCCTTCCCGTG C . PASS . . . . . . 37.0 70.0 39 257.92 0.93 28.21 1 33.33 0/1
chr1 3319618 . CCTCCCCTTCCCGTG CCTCCCCTCCCCGTG . PASS . . . . . . 34.5 70.0 39 257.92 28.21 5.13 1 33.33 0/1
chr1 3319619 . CT C . PASS . . . . . . 37.0 70.0 52 260.92 4.20 21.15 1 21.15 0/1
chr1 3319620 . TC T . PASS . . . . . . 37.0 70.0 52 260.92 4.20 21.15 1 21.15 0/1
chr1 3319621 . CC C . PASS . . . . . . 37.0 70.0 52 260.92 4.20 21.15 1 21.15 0/1
chr1 3319622 . CC C . PASS . . . . . . 37.0 70.0 50 266.94 3.27 22.00 1 22.00 0/1
chr1 3319623 . CC C . PASS . . . . . . 37.0 70.0 47 275.97 0.39 23.40 1 23.40 0/1
chr1 3319624 . CT C . PASS . . . . . . 37.0 70.0 45 282.02 1.62 24.44 1 24.44 0/1
chr1 3319625 . TT T . PASS . . . . . . 36.08 70.0 45 288.01 1.62 24.44 1 28.89 0/1
chr1 3319626 . TC T . PASS . . . . . . 37.0 70.0 45 281.99 2.83 24.44 1 24.44 0/1
chr1 3319627 . CC C . PASS . . . . . . 37.0 70.0 45 281.99 1.62 24.44 1 24.44 0/1
chr1 3319628 . CC C . PASS . . . . . . 37.0 70.0 45 282.00 1.62 24.44 1 24.44 0/1
chr1 3319629 . CG C . PASS . . . . . . 37.0 70.0 42 291.02 6.06 26.19 1 26.19 0/1
chr1 3319630 . GT G . PASS . . . . . . 37.0 70.0 41 294.07 0.44 26.83 1 26.83 0/1
chr1 3319631 . TG T . PASS . . . . . . 37.0 70.0 43 288.01 2.96 25.58 1 25.58 0/1
chr1 3319674 rs12562397 C T . PASS 0.3722000 0.5432000 0.6339000 0.6511000 0.6677000 0.5623000 35.91 70.0 22 859.44 0.00 100.00 0 100.00 1/1
chr1 3319681 rs12562399 C G . PASS 0.3714000 0.5432000 0.6339000 0.6511000 0.6677000 0.5621000 35.2 70.0 20 759.74 0.00 100.00 0 100.00 1/1
chr1 3328358 rs870124 T C . PASS 0.9924000 0.9006000 0.9980000 0.8419000 0.9642000 0.9451000 36.24 69.68 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 3328659 rs2493292 C T . PASS 0.1634000 0.1210000 0.0060000 0.1660000 0.0593000 0.1060000 37.0 70.0 96 1000.00 9.31 53.12 0 53.12 0/1
chr1 3329384 rs2493291 C T . PASS 0.1717000 0.1196000 0.0060000 0.1610000 0.0593000 0.1070000 36.25 70.0 36 515.49 18.06 44.44 0 44.44 0/1
chr1 3331733 rs2483228 T C . PASS 0.5991000 0.5303000 0.3472000 0.4503000 0.3599000 0.4623000 36.53 70.0 128 1000.00 0.00 100.00 0 100.00 1/1
chr1 3331899 rs1999528 A G . PASS 0.9713000 0.5850000 0.3879000 0.5089000 0.3354000 0.5833000 37.0 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 3342109 rs41303861 G T . PASS 0.0991000 0.1398000 0.0179000 0.2217000 0.1217000 0.1174000 36.25 70.0 54 1000.00 4.86 59.26 0 59.26 0/1
chr1 3342530 rs2244013 G A . PASS 0.7723000 0.3573000 0.1994000 0.2624000 0.1564000 0.3768000 35.5 70.0 12 253.56 33.33 66.67 0 66.67 0/1
chr1 3342804 rs870171 G T . PASS 0.4387000 0.3444000 0.5238000 0.2753000 0.2822000 0.3794000 35.29 70.0 25 168.52 14.86 28.00 0 28.00 0/1
chr1 3350134 rs10752734 T C . PASS 0.5182000 0.3775000 0.5159000 0.4811000 0.3937000 0.4665000 36.0 69.75 24 942.98 0.00 100.00 0 100.00 1/1
chr1 3383665 rs7550948 G A . PASS 0.3880000 0.7536000 0.6657000 0.8698000 0.8517000 0.6819000 35.36 70.0 35 745.10 13.25 62.86 0 62.86 0/1
chr1 3383898 rs6424078 A G . PASS 0.8563000 0.8343000 0.8026000 0.9125000 0.8885000 0.8600000 37.0 70.0 78 1000.00 9.09 42.31 0 42.31 0/1
chr1 3384052 rs45512802 C T . PASS 0.0310000 0.0231000 0.0000000 0.0378000 0.0000000 0.0189700 37.0 70.0 10 188.05 0.00 60.00 0 60.00 0/1
chr1 3389727 rs2185639 C T . PASS 0.3850000 0.7550000 0.6746000 0.8638000 0.8650000 0.6845000 36.24 69.68 110 1000.00 1.13 57.27 0 57.27 0/1
chr1 3394456 rs4638054 T C . PASS 0.8971000 0.9928000 1.0000000 0.9980000 0.9959000 0.9706000 36.13 70.0 55 1000.00 0.00 100.00 0 100.00 1/1
chr1 3394640 rs4422946 A G . PASS 0.8328000 0.9352000 0.8700000 0.9245000 0.9703000 0.8998000 36.33 70.0 55 541.84 8.48 32.73 0 32.73 0/1
chr1 3394674 rs4534324 T C . PASS 0.8971000 0.9928000 1.0000000 0.9980000 1.0000000 0.9714000 35.86 70.0 21 817.67 0.00 100.00 0 100.00 1/1
chr1 3395039 rs10797395 G A . PASS 0.3873000 0.7637000 0.6766000 0.8628000 0.8630000 0.6861000 35.8 70.0 98 1000.00 2.24 40.82 0 40.82 0/1
chr1 3395229 rs4553117 T C . PASS 0.9070000 0.9914000 0.9960000 1.0000000 1.0000000 0.9734000 36.67 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 3397062 rs56309807 G A . PASS 0.0318000 0.0245000 0.0000000 0.0368000 0.0000000 0.0191690 36.01 69.45 168 1000.00 5.19 43.45 0 43.45 0/1
chr1 3397188 rs2487677 T C . PASS 0.9697000 0.9986000 1.0000000 1.0000000 1.0000000 0.9918000 36.79 70.0 58 1000.00 0.74 96.55 0 96.55 1/1
chr1 3417123 rs72633385 G A . PASS 0.0038000 0.0000000 0.0000000 0.0000000 0.0000000 0.0009984 37.0 70.0 27 387.51 7.41 44.44 0 44.44 0/1
chr1 3418565 rs2821030 T C . PASS . . . . . . 36.29 70.0 36 557.27 15.03 47.22 0 47.22 0/1
chr1 3421658 rs2821009 A T . PASS 0.6891000 0.4352000 0.6627000 0.3201000 0.3538000 0.5090000 35.8 70.0 10 366.07 0.00 100.00 0 100.00 1/1
chr1 3421897 rs2821008 A G . PASS 0.4251000 0.2277000 0.2331000 0.1799000 0.1656000 0.2592000 36.64 70.0 58 1000.00 3.13 56.90 0 56.90 0/1
chr1 3424388 rs947345 G A . PASS 0.1067000 0.0476000 0.0466000 0.0676000 0.0102000 0.0597000 36.44 70.0 92 1000.00 9.45 46.74 0 46.74 0/1
chr1 3428160 rs2820999 T G . PASS 0.7511000 0.4049000 0.6409000 0.2863000 0.3027000 0.5000000 36.57 70.0 166 1000.00 0.00 100.00 0 100.00 1/1
chr1 3428424 rs4648391 G T . PASS 0.4667000 0.2536000 0.5089000 0.1988000 0.2362000 0.3468000 37.0 70.0 13 503.38 0.00 100.00 0 100.00 1/1
chr1 3428428 rs4648514 C T . PASS 0.4667000 0.2536000 0.5089000 0.1988000 0.2362000 0.3468000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 3428608 rs11585362 G A . PASS 0.3411000 0.1945000 0.4048000 0.1501000 0.1360000 0.2552000 36.64 70.0 100 1000.00 0.00 100.00 0 100.00 1/1
chr1 3440647 rs2794322 T C . PASS 0.9516000 0.9524000 0.9137000 0.9662000 0.9049000 0.9379000 36.84 69.73 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 3496328 rs2821051 T C . PASS 0.6483000 0.8718000 0.7063000 0.9105000 0.8885000 0.7905000 36.68 69.46 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 3496479 rs2794340 T C . PASS 0.8691000 0.8919000 0.7054000 0.9155000 0.8906000 0.8528000 36.55 69.85 133 1000.00 0.00 100.00 0 100.00 1/1
chr1 3511862 . G A . PASS . . . . . . 37.0 70.0 12 56.72 33.33 25.00 0 25.00 0/1
chr1 3511934 rs7513275 A G . PASS 0.2405000 0.1859000 0.3323000 0.1451000 0.2147000 0.2272000 36.54 70.0 49 894.06 12.87 53.06 0 53.06 0/1
chr1 3518944 rs7521546 T C . PASS 0.5454000 0.6326000 0.6478000 0.6769000 0.6186000 0.6188000 37.0 70.0 22 883.47 0.00 100.00 0 100.00 1/1
chr1 3545175 rs147637374,rs58849058 GTTCTGGGAGCTCCTCCCCC G . PASS . . . . . . 36.31 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 3548136 rs2760321 T C . PASS 0.8926000 0.8458000 0.9950000 0.8360000 0.9479000 0.9061000 36.43 70.0 127 1000.00 0.00 100.00 0 100.00 1/1
chr1 3548832 rs2760320 G C . PASS 0.0348000 0.1398000 0.0020000 0.0547000 0.0470000 0.0491000 36.56 70.0 112 1000.00 10.58 48.21 0 48.21 0/1
chr1 3553789 rs2821058 T C . PASS 0.9992000 1.0000000 1.0000000 0.9930000 0.9816000 0.9948000 37.0 70.0 18 716.39 0.00 100.00 0 100.00 1/1
chr1 3566625 rs145464993 AGCAGGCTG A . PASS 0.1203000 0.4222000 0.4653000 0.4881000 0.4724000 0.3742000 34.62 70.0 19 96.63 6.58 42.11 0 42.11 0/1
chr1 3607520 rs3765730 G A . PASS 0.0219000 0.2305000 0.3502000 0.3797000 0.2679000 0.2368000 36.24 70.0 124 1000.00 3.15 50.81 0 50.81 0/1
chr1 3638674 rs1801174 C T . PASS 0.7738000 0.7219000 0.5268000 0.9135000 0.7280000 0.7360000 36.7 70.0 80 1000.00 0.00 100.00 0 100.00 1/1
chr1 3638834 rs12737840 C T . PASS 0.0938000 0.3761000 0.0228000 0.4006000 0.3190000 0.2242000 37.0 70.0 40 598.99 2.78 45.00 0 45.00 0/1
chr1 3640085 rs6424091 C G . PASS 0.8707000 0.6988000 0.5407000 0.8638000 0.6534000 0.7366000 35.72 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 3640134 rs35939665,rs59901813 TCTGC T . PASS 0.7806000 0.6916000 0.5486000 0.8638000 0.6534000 0.7135000 36.58 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 3644349 rs2181486 A G . PASS 0.7753000 0.6758000 0.3353000 0.8250000 0.6063000 0.6500000 36.61 70.0 93 1000.00 0.00 100.00 0 100.00 1/1
chr1 3644374 rs2146657 A G . PASS 0.7723000 0.6758000 0.3353000 0.8280000 0.6074000 0.6500000 36.52 70.0 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 3644669 rs2236367 C T . PASS 0.0356000 0.0418000 0.0625000 0.0736000 0.1524000 0.0723000 36.29 70.0 38 551.24 11.15 44.74 0 44.74 0/1
chr1 3644805 rs2236366 A G . PASS 0.6657000 0.1066000 0.2817000 0.1083000 0.2260000 0.3131000 37.0 69.41 79 1000.00 5.44 43.04 0 43.04 0/1
chr1 3644858 rs2236365 G C . PASS 0.4675000 0.0807000 0.0625000 0.0775000 0.1524000 0.1925000 36.08 70.0 35 389.04 14.07 37.14 0 37.14 0/1
chr1 3669172 rs41315312 C T . PASS 0.0461000 0.0418000 0.0645000 0.0875000 0.1503000 0.0779000 36.69 70.0 101 1000.00 4.37 38.61 0 38.61 0/1
chr1 3669201 rs10797410 A G . PASS 0.8389000 0.4452000 0.2897000 0.3996000 0.4468000 0.5090000 36.75 70.0 95 1000.00 0.00 100.00 0 100.00 1/1
chr1 3669205 rs10910021 C G . PASS 0.4017000 0.4078000 0.2897000 0.3946000 0.4458000 0.3872000 36.88 70.0 96 1000.00 0.00 100.00 0 100.00 1/1
chr1 3672156 rs4648555 C A . PASS 0.0855000 0.2767000 0.0089000 0.2803000 0.1984000 0.1577000 36.14 70.0 45 973.49 8.41 62.22 0 62.22 0/1
chr1 3673496 rs4648405 T G . PASS 0.3033000 0.3617000 0.2222000 0.3002000 0.2423000 0.2825000 36.11 69.26 45 931.72 16.30 60.00 0 60.00 0/1
chr1 3677933 rs1181883 T C . PASS 0.6944000 0.4683000 0.2788000 0.4354000 0.4315000 0.4760000 36.31 70.0 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 3679139 rs1181879 T C . PASS 0.8154000 0.4841000 0.2847000 0.4563000 0.4387000 0.5170000 37.0 70.0 16 632.84 0.00 100.00 0 100.00 1/1
chr1 3679146 rs4648556 G A . PASS 0.1430000 0.2824000 0.0089000 0.2952000 0.2127000 0.1795000 37.0 70.0 17 208.75 15.13 41.18 0 41.18 0/1
chr1 3679307 rs4648557 T C . PASS 0.1430000 0.2839000 0.0089000 0.2962000 0.2127000 0.1799000 37.0 70.0 29 590.34 11.36 58.62 0 58.62 0/1
chr1 3679775 rs10910024 C T . PASS 0.1074000 0.2738000 0.0030000 0.2435000 0.1677000 0.1486000 35.93 70.0 90 1000.00 2.70 62.22 0 62.22 0/1
chr1 3680056 rs56079032 G A . PASS 0.0023000 0.0245000 0.0000000 0.0447000 0.0051000 0.0139780 37.0 70.0 67 977.21 3.81 43.28 0 43.28 0/1
chr1 3683690 rs1181873 A C . PASS 0.6997000 0.2752000 0.0198000 0.4274000 0.2699000 0.3654000 37.0 70.0 13 174.87 15.38 46.15 0 46.15 0/1
chr1 3703337 rs2368537 G C . PASS 0.3457000 0.4539000 0.3998000 0.6481000 0.5256000 0.4675000 37.0 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 3703710 rs2253143 G A . PASS 0.0068000 0.1110000 0.2837000 0.0318000 0.0644000 0.0933000 35.88 70.0 72 1000.00 3.47 44.44 0 44.44 0/1
chr1 3746583 rs2275828 G T . PASS 0.2360000 0.4928000 0.3383000 0.4294000 0.3323000 0.3498000 35.8 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 3746589 rs2275826 C G . PASS 0.9198000 0.8689000 0.4792000 0.9443000 0.7178000 0.7895000 36.14 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 3747580 rs6424058 C T . PASS 0.2179000 0.4928000 0.3383000 0.4294000 0.3323000 0.3450000 36.29 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 3747603 rs6413779 T C . PASS 0.9198000 0.8689000 0.4792000 0.9443000 0.7178000 0.7895000 36.56 70.0 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 3753136 rs2275824 A T . PASS 0.0605000 0.4870000 0.3383000 0.4284000 0.3333000 0.3027000 36.0 70.0 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 3755675 rs1891941 T C . PASS 0.9198000 0.8689000 0.4792000 0.9443000 0.7178000 0.7895000 36.8 70.0 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 3756120 rs1539649 A G . PASS 0.2390000 0.5403000 0.4266000 0.4583000 0.3507000 0.3844000 36.0 69.17 24 942.98 0.00 100.00 0 100.00 1/1
chr1 3761479 rs2275822 C T . PASS 0.2345000 0.4928000 0.3383000 0.4294000 0.3323000 0.3494000 36.82 70.0 65 1000.00 0.00 100.00 0 100.00 1/1
chr1 3775454 rs4376673 C G . PASS 0.9697000 0.8703000 0.5000000 0.9433000 0.7505000 0.8133000 36.81 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 3782608 rs10909809 C T . PASS 0.2693000 0.5346000 0.3095000 0.6511000 0.4918000 0.4343000 37.0 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 3800242 rs3205087 A G . PASS 0.3124000 0.3256000 0.3482000 0.4105000 0.3875000 0.3558000 36.08 70.0 78 1000.00 0.00 100.00 0 100.00 1/1
chr1 3806643 rs4520357 T A . PASS 0.5696000 0.3602000 0.4335000 0.3241000 0.3528000 0.4215000 36.71 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 3807593 rs4274008 G C . PASS 0.9992000 0.9986000 0.9990000 0.9930000 0.9990000 0.9978000 36.61 70.0 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 3809423 rs11807227 G A . PASS 0.1006000 0.1124000 0.2331000 0.1262000 0.1595000 0.1456000 36.45 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 4004399 rs55651676 C G . PASS 0.6619000 0.3285000 0.3482000 0.3728000 0.4796000 0.4589000 35.77 70.0 92 1000.00 1.78 42.39 0 42.39 0/1
chr1 4363645 rs5772148 CT C . PASS 0.9077000 0.6614000 0.7857000 0.6948000 0.6043000 0.7470000 35.42 70.0 26 361.94 21.79 46.15 0 46.15 0/1
chr1 4363735 rs34429154 C A . PASS 0.3555000 0.4755000 0.5228000 0.5974000 0.4939000 0.4814000 36.55 70.0 129 1000.00 1.58 41.09 0 41.09 0/1
chr1 4715401 . C A . PASS 0.0000000 0.0043000 0.0000000 0.0050000 0.0010000 0.0017971 37.0 70.0 27 299.81 5.93 37.04 0 37.04 0/1
chr1 4772053 rs1061968 T C . PASS 0.5212000 0.5014000 0.6567000 0.3668000 0.5828000 0.5268000 36.45 70.0 87 1000.00 10.34 50.57 0 50.57 0/1
chr1 4772717 rs242056 G A . PASS 0.1664000 0.3761000 0.2728000 0.6431000 0.4131000 0.3608000 35.52 70.0 89 1000.00 0.00 100.00 0 100.00 1/1
chr1 4834606 rs389959 T C . PASS 0.1483000 0.1758000 0.0486000 0.2674000 0.1626000 0.1587000 37.0 70.0 65 1000.00 4.76 50.77 0 50.77 0/1
chr1 4999647 . ATATGATGTCAATATCCTCCG A . PASS . . . . . . 35.41 70.0 82 1000.00 6.31 62.20 0 63.41 0/1
chr1 5330103 rs587619 A G . PASS 0.3003000 0.4798000 0.3383000 0.6352000 0.3967000 0.4189000 36.71 70.0 82 1000.00 0.00 100.00 0 100.00 1/1
chr1 5330208 rs684796 A G . PASS 0.3003000 0.4798000 0.3383000 0.6352000 0.3967000 0.4189000 36.66 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 5330239 rs493993 T C . PASS 0.3608000 0.4856000 0.3383000 0.6352000 0.3937000 0.4351000 37.0 70.0 15 591.07 0.00 100.00 0 100.00 1/1
chr1 5330286 rs494138 C T . PASS 0.3003000 0.4798000 0.3383000 0.6352000 0.3967000 0.4189000 34.6 70.0 10 358.20 0.00 100.00 0 100.00 1/1
chr1 5664897 rs72641915 C T . PASS 0.0371000 0.1455000 0.1121000 0.1759000 0.0930000 0.1060000 35.4 70.0 23 500.84 5.80 65.22 0 65.22 0/1
chr1 5665134 rs770686 G T . PASS 0.9644000 0.8588000 0.8889000 0.7495000 0.7393000 0.8474000 37.0 70.0 11 419.85 0.00 100.00 0 100.00 1/1
chr1 5934490 rs868163 A G . PASS 0.7065000 0.5317000 0.3065000 0.6252000 0.6237000 0.5693000 36.71 70.0 82 1000.00 0.00 100.00 0 100.00 1/1
chr1 5934837 rs1287638 C T . PASS 0.5998000 0.3444000 0.0992000 0.4861000 0.4162000 0.4050000 36.79 69.65 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 5935162 rs1287637 A T . PASS 0.9100000 0.8401000 0.7907000 0.8111000 0.8425000 0.8433000 36.45 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 5935222 rs963030 T C . PASS 0.3828000 0.3559000 0.2619000 0.4553000 0.3456000 0.3620000 37.0 70.0 25 1000.00 0.00 100.00 0 100.00 1/1
chr1 5937091 rs1622955 T C . PASS 0.9932000 0.8473000 0.8671000 0.8976000 0.8691000 0.9042000 37.0 69.52 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 5937391 rs3747989 C T . PASS 0.9690000 0.7522000 0.8373000 0.8121000 0.7219000 0.8327000 36.7 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 5967064 rs9628990 G T . PASS 0.0401000 0.0965000 0.0099000 0.1819000 0.1309000 0.0881000 37.0 70.0 13 503.38 0.00 100.00 0 100.00 1/1
chr1 6027167 rs875574 C A . PASS 0.7360000 0.6369000 0.7460000 0.6600000 0.6370000 0.6897000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 6027252 rs875573 A G . PASS 0.6286000 0.6311000 0.7460000 0.6581000 0.6370000 0.6601000 36.45 70.0 22 871.45 0.00 100.00 0 100.00 1/1
chr1 6111721 rs202153711 C T . PASS 0.0000000 0.0000000 0.0000000 0.0050000 0.0031000 0.0015974 37.0 70.0 73 792.06 0.11 34.25 0 34.25 0/1
chr1 6111757 rs11589347 G A . PASS 0.0008000 0.0375000 0.0010000 0.0457000 0.0092000 0.0165730 37.0 70.0 81 1000.00 1.20 50.62 0 50.62 0/1
chr1 6142418 rs72630691 C T . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 70.0 14 92.47 0.00 28.57 0 28.57 0/1
chr1 6145365 rs2294936 A G . PASS 0.7716000 0.6571000 0.7798000 0.6551000 0.5286000 0.6865000 37.0 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 6154417 rs2294932 C T . PASS 0.1331000 0.2233000 0.3899000 0.2515000 0.1840000 0.2310000 37.0 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 6155332 rs1555144 T C . PASS 0.8722000 0.7176000 0.7530000 0.7157000 0.5235000 0.7272000 37.0 70.0 22 883.47 0.00 100.00 0 100.00 1/1
chr1 6155530 . G C . PASS . . . . . . 28.2 70.0 49 310.35 130.61 30.61 0 30.61 0/1
chr1 6155535 . A C . PASS . . . . . . 34.43 70.0 52 355.63 130.77 26.92 0 26.92 0/1
chr1 6155540 . A C . PASS . . . . . . 34.0 70.0 51 275.09 141.18 23.53 0 23.53 0/1
chr1 6157434 rs2311802 C T . PASS 0.7088000 0.5418000 0.1875000 0.4672000 0.3088000 0.4541000 36.6 70.0 90 1000.00 0.00 100.00 0 100.00 1/1
chr1 6158562 rs2229002 A G . PASS 0.6415000 0.6095000 0.4018000 0.6093000 0.4448000 0.5439000 36.04 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 6170353 rs2281303 C T . PASS 0.1755000 0.1556000 0.1974000 0.0954000 0.2219000 0.1701000 35.65 69.68 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 6170424 rs78789357 CG C . PASS 0.5363000 0.5029000 0.6141000 0.4583000 0.6851000 0.5607000 36.2 69.9 192 1000.00 0.00 100.00 0 100.00 1/1
chr1 6172875 rs4908515 G A . PASS 0.6362000 0.5865000 0.9950000 0.5835000 0.8262000 0.7280000 35.59 70.0 17 650.59 0.00 100.00 0 100.00 1/1
chr1 6184092 rs2843493 A G . PASS 0.6120000 0.5994000 0.9940000 0.5994000 0.8323000 0.7276000 36.88 70.0 97 1000.00 0.00 100.00 0 100.00 1/1
chr1 6184192 rs2273041 A G . PASS 0.6089000 0.5216000 0.8254000 0.4463000 0.7658000 0.6384000 35.7 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 6184286 rs2273040 A G . PASS 0.5976000 0.5821000 0.8274000 0.5567000 0.7832000 0.6697000 33.73 70.0 11 387.96 0.00 100.00 0 100.00 1/1
chr1 6185064 rs55930553 G A . PASS 0.0832000 0.3429000 0.1756000 0.2773000 0.4479000 0.2480000 36.14 70.0 14 537.29 0.00 100.00 0 100.00 1/1
chr1 6185532 rs2273037 G A . PASS 0.0840000 0.3429000 0.1756000 0.2773000 0.4479000 0.2482000 33.48 70.0 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 6188044 rs3215558 TG T . PASS . . . . . . 35.29 70.0 21 796.11 0.00 100.00 0 100.00 1/1
chr1 6188546 rs2273034 G A . PASS 0.0817000 0.3444000 0.1875000 0.2773000 0.4479000 0.2502000 35.84 70.0 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 6188779 rs2273033 G C . PASS 0.0832000 0.3458000 0.1875000 0.2773000 0.4479000 0.2508000 36.48 70.0 23 909.07 0.00 100.00 0 100.00 1/1
chr1 6195493 rs2250504 G A . PASS 0.3139000 0.4640000 0.7956000 0.3956000 0.6309000 0.5100000 36.23 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 6196493 rs7526887 A G . PASS 0.3359000 0.4683000 0.7986000 0.3956000 0.6309000 0.5170000 33.57 68.57 14 501.25 0.00 100.00 0 100.00 1/1
chr1 6196517 rs7513548 G A . PASS 0.3351000 0.4683000 0.7986000 0.3956000 0.6309000 0.5168000 36.54 69.23 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 6196869 rs2250358 A G . PASS 0.3366000 0.4697000 0.7996000 0.3946000 0.6329000 0.5178000 37.0 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 6196943 rs2746066 A G . PASS 0.3359000 0.4683000 0.7996000 0.3946000 0.6309000 0.5170000 37.0 70.0 16 632.84 0.00 100.00 0 100.00 1/1
chr1 6196951 rs2785582 T A . PASS 0.3366000 0.4683000 0.7996000 0.3946000 0.6309000 0.5172000 35.0 70.0 12 437.59 0.00 100.00 0 100.00 1/1
chr1 6204222 rs17489787 C G . PASS 0.1967000 0.1326000 0.1359000 0.0944000 0.2577000 0.1669000 35.67 70.0 27 246.03 7.41 33.33 0 33.33 0/1
chr1 6204266 rs9435102 A G . PASS 0.8245000 0.5476000 0.8413000 0.4891000 0.7658000 0.7107000 37.0 70.0 17 674.61 0.00 100.00 0 100.00 1/1
chr1 6206153 rs2294715 T C . PASS 0.3389000 0.0865000 0.4048000 0.1362000 0.1728000 0.2440000 37.0 70.0 11 185.04 15.15 54.55 0 54.55 0/1
chr1 6209363 rs12565328 T C . PASS 0.7216000 0.2147000 0.6538000 0.3082000 0.5634000 0.5238000 36.62 70.0 94 1000.00 0.00 100.00 0 100.00 1/1
chr1 6211183 rs9434711 G A . PASS 0.6906000 0.2089000 0.6528000 0.3002000 0.5286000 0.5062000 36.65 70.0 104 1000.00 0.00 100.00 0 100.00 1/1
chr1 6212356 rs1883605 G A . PASS 0.1112000 0.0360000 0.0079000 0.0765000 0.1339000 0.0775000 37.0 70.0 13 137.25 0.00 38.46 0 38.46 0/1
chr1 6212408 rs746122 G A . PASS 0.1483000 0.0389000 0.0079000 0.0775000 0.1339000 0.0879000 36.5 70.0 49 810.52 0.68 48.98 0 48.98 0/1
chr1 6215736 rs12074369 C G . PASS 0.3714000 0.0605000 0.0079000 0.0805000 0.1278000 0.1492000 37.0 70.0 92 1000.00 6.07 46.74 0 46.74 0/1
chr1 6239937 rs70981314 C CG . PASS 0.9939000 1.0000000 1.0000000 1.0000000 1.0000000 0.9984000 37.0 70.0 13 491.94 0.00 100.00 0 100.00 1/1
chr1 6257826 rs2294714 T C . PASS 0.4410000 0.3343000 0.4554000 0.2773000 0.2566000 0.3602000 36.14 70.0 27 459.04 4.23 51.85 0 51.85 0/1
chr1 6257856 rs2294713 G A . PASS 0.7481000 0.4841000 0.6607000 0.4583000 0.3896000 0.5657000 37.0 70.0 17 208.75 6.72 41.18 0 41.18 0/1
chr1 6269340 rs4908865 A G . PASS 0.3011000 0.0793000 0.0813000 0.0755000 0.1125000 0.1440000 37.0 70.0 84 1000.00 3.17 42.86 0 42.86 0/1
chr1 6272137 rs709208 A G . PASS 0.4637000 0.2320000 0.2143000 0.3082000 0.3487000 0.3277000 37.0 70.0 54 1000.00 3.27 94.44 0 100.00 1/1
chr1 6273206 rs55823245 C T . PASS 0.0015000 0.0086000 0.0000000 0.0258000 0.0133000 0.0093850 37.0 70.0 57 756.68 19.98 40.35 0 40.35 0/1
chr1 6278414 rs709209 A G . PASS 0.7405000 0.2939000 0.2639000 0.3469000 0.3998000 0.4371000 37.0 70.0 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 6279370 rs846111 G C . PASS 0.0227000 0.1758000 0.1756000 0.2604000 0.2791000 0.1725000 36.29 70.0 59 1000.00 4.19 57.63 0 57.63 0/1
chr1 6453520 rs76483502 C CG . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.68 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 6530965 rs112662590,rs111312565 C CG . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.32 70.0 61 1000.00 1.53 98.36 0 98.36 1/1
chr1 6579607 rs1556035 C T . PASS 0.4531000 0.8660000 0.8075000 0.8797000 0.8558000 0.7460000 37.0 70.0 78 1000.00 0.00 100.00 0 100.00 1/1
chr1 6585804 rs13513 C T . PASS 0.5038000 0.8602000 0.7917000 0.8598000 0.8057000 0.7416000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 6586070 rs7548042 C T . PASS 0.9266000 0.9914000 1.0000000 1.0000000 1.0000000 0.9794000 36.5 70.0 24 954.99 0.00 100.00 0 100.00 1/1
chr1 6591937 rs932112 T C . PASS 0.6225000 0.8617000 0.8234000 0.8588000 0.8057000 0.7794000 37.0 70.0 17 674.61 0.00 100.00 0 100.00 1/1
chr1 6609559 rs11122091 C A . PASS 0.4107000 0.8429000 0.7937000 0.8569000 0.8221000 0.7177000 36.62 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 6614391 rs6693391 A C . PASS 0.8722000 0.9841000 0.9692000 0.9950000 0.9969000 0.9563000 36.76 70.0 102 1000.00 0.00 100.00 0 100.00 1/1
chr1 6614415 rs6693400 A G . PASS 0.9281000 0.9914000 1.0000000 1.0000000 1.0000000 0.9798000 36.62 70.0 95 1000.00 0.00 100.00 0 100.00 1/1
chr1 6614535 rs4908923 G A . PASS 0.4266000 0.8473000 0.7927000 0.8608000 0.8180000 0.7222000 36.71 70.0 84 1000.00 0.00 100.00 0 100.00 1/1
chr1 6614653 rs4908924 C G . PASS 0.5726000 0.8516000 0.7927000 0.8628000 0.8180000 0.7618000 37.0 70.0 18 712.24 0.00 100.00 0 100.00 1/1
chr1 6615690 rs925745 A G . PASS 0.4289000 0.8545000 0.7907000 0.8648000 0.8200000 0.7246000 36.45 70.0 22 871.45 0.00 100.00 0 100.00 1/1
chr1 6615695 rs925744 C T . PASS 0.4871000 0.8487000 0.7907000 0.8618000 0.8190000 0.7384000 35.11 70.0 19 722.12 0.00 100.00 0 100.00 1/1
chr1 6631319 rs11122096 G A . PASS 0.6717000 0.9611000 0.9385000 0.9801000 0.9847000 0.8886000 36.73 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 6631352 rs34514006 TC T . PASS 0.6793000 0.9611000 0.9712000 0.9801000 0.9847000 0.8972000 35.7 70.0 23 885.65 0.00 100.00 0 100.00 1/1
chr1 6635231 rs10864628 A G . PASS 0.7216000 0.9841000 1.0000000 0.9990000 0.9959000 0.9233000 36.36 70.0 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 6636461 rs17492553 C T . PASS 0.2322000 0.4625000 0.3472000 0.5219000 0.3569000 0.3698000 36.55 70.0 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 6641348 rs72634778 G A . PASS 0.0008000 0.0014000 0.0000000 0.0129000 0.0041000 0.0037939 37.0 69.29 65 941.45 3.52 43.08 0 43.08 0/1
chr1 6645867 rs6682920 G A . PASS 0.2557000 0.3314000 0.3839000 0.3221000 0.4836000 0.3498000 37.0 70.0 18 372.82 8.08 61.11 0 61.11 0/1
chr1 6646959 rs3833475,rs374401991 GCCTGCCTTC G . PASS 0.6513000 0.6037000 0.5843000 0.7008000 0.8027000 0.6707000 36.6 70.0 15 533.74 0.00 100.00 0 100.00 1/1
chr1 6659505 rs2232460 G A . PASS 0.2670000 0.3127000 0.3800000 0.3171000 0.4785000 0.3474000 37.0 70.0 65 816.15 8.00 38.46 0 38.46 0/1
chr1 6662913 rs6674407 G A . PASS 0.1339000 0.3040000 0.3810000 0.3171000 0.4877000 0.3131000 37.0 68.33 22 402.55 6.06 54.55 0 54.55 0/1
chr1 6679848 rs2072948 C T . PASS 0.0900000 0.2435000 0.1548000 0.3539000 0.2965000 0.2177000 35.4 70.0 43 1000.00 10.23 69.77 0 69.77 0/1
chr1 6681744 rs3747994 C T . PASS 0.7360000 0.6167000 0.5784000 0.7018000 0.8067000 0.6947000 37.0 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 6685442 rs12746591 A G . PASS 0.7110000 0.6138000 0.5813000 0.6948000 0.7986000 0.6853000 37.0 70.0 21 841.70 0.00 100.00 0 100.00 1/1
chr1 6693097 rs3174820 A G . PASS 0.3086000 0.3429000 0.3889000 0.3320000 0.4939000 0.3704000 37.0 69.31 67 1000.00 3.21 58.21 0 58.21 0/1
chr1 6694207 rs12727844 A G . PASS 0.3064000 0.3429000 0.3879000 0.3310000 0.4898000 0.3686000 37.0 70.0 23 357.78 3.95 47.83 0 47.83 0/1
chr1 6695802 rs6577583 A G . PASS 0.7330000 0.6182000 0.6359000 0.6968000 0.7955000 0.7025000 36.38 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 6704635 rs200458 A G . PASS 0.8676000 0.9625000 0.5704000 0.9245000 0.8712000 0.8331000 36.27 69.86 147 1000.00 0.00 100.00 0 100.00 1/1
chr1 6713114 rs2235564 C T . PASS 0.4107000 0.3213000 0.1776000 0.3718000 0.3139000 0.3247000 37.0 70.0 16 378.84 4.55 68.75 0 68.75 0/1
chr1 6761702 rs3761925 C T . PASS 0.1831000 0.3156000 0.3998000 0.2893000 0.4826000 0.3249000 37.0 70.0 15 340.08 13.33 66.67 0 66.67 0/1
chr1 6866978 rs660880 G A . PASS 0.1490000 0.6354000 0.1111000 0.5288000 0.2883000 0.3123000 37.0 68.67 24 521.84 3.33 62.50 0 62.50 0/1
chr1 7151479 rs72640073 T C . PASS 0.0174000 0.1988000 0.0268000 0.2038000 0.1483000 0.1074000 37.0 70.0 41 679.53 1.95 48.78 0 48.78 0/1
chr1 7326201 rs7517429 A G . PASS 0.9970000 0.9265000 0.8373000 0.9056000 0.8783000 0.9135000 35.83 69.51 83 1000.00 3.53 49.40 0 49.40 0/1
chr1 7527996 rs1201529 T C . PASS 0.6520000 0.4035000 0.2768000 0.5746000 0.3323000 0.4641000 36.14 70.0 40 419.90 3.57 35.00 0 35.00 0/1
chr1 7707287 rs4908660 G A . PASS 0.8858000 0.7464000 0.6458000 0.6988000 0.7372000 0.7516000 34.49 69.07 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 7723957 rs12128526 G A . PASS 0.3873000 0.4539000 0.3313000 0.4304000 0.4192000 0.4002000 36.5 70.0 43 828.58 3.29 55.81 0 55.81 0/1
chr1 7725284 rs4908671 C A . PASS 0.1384000 0.1988000 0.0903000 0.3678000 0.3691000 0.2282000 36.0 69.44 84 1000.00 0.79 42.86 0 42.86 0/1
chr1 7725414 rs4908672 C T . PASS 0.2231000 0.2032000 0.0913000 0.3678000 0.3691000 0.2514000 37.0 70.0 13 53.71 0.00 23.08 0 23.08 0/1
chr1 7737799 rs3011926 A G . PASS 0.5855000 0.5375000 0.6587000 0.5686000 0.5930000 0.5917000 36.78 70.0 129 1000.00 1.12 41.86 0 41.86 0/1
chr1 7845695 rs228729 T C . PASS 0.7776000 0.7565000 0.7619000 0.6620000 0.6554000 0.7244000 36.73 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 7861304 rs707465 T C . PASS 0.5832000 0.2622000 0.5288000 0.3748000 0.3834000 0.4469000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 7869915 rs228668 G C . PASS 0.9796000 0.9654000 1.0000000 0.9513000 0.9806000 0.9762000 37.0 70.0 69 1000.00 0.00 100.00 0 100.00 1/1
chr1 7870048 rs228669 T C . PASS 0.9720000 0.7608000 0.7232000 0.9324000 0.9427000 0.8790000 36.61 69.78 93 1000.00 0.00 100.00 0 100.00 1/1
chr1 7887248 rs2859387 G A . PASS 0.5333000 0.4597000 0.8026000 0.3718000 0.3896000 0.5168000 37.0 70.0 78 1000.00 0.00 100.00 0 100.00 1/1
chr1 7887493 rs228696 T C . PASS 0.9758000 0.9654000 1.0000000 0.9513000 0.9806000 0.9752000 36.61 70.0 93 1000.00 0.00 100.00 0 100.00 1/1
chr1 7889941 rs2640908 C T . PASS 0.3154000 0.1599000 0.4851000 0.1978000 0.3149000 0.3043000 36.28 69.2 51 1000.00 1.96 98.04 0 98.04 1/1
chr1 7890010 rs11576985 A G . PASS 0.0015000 0.0029000 0.0000000 0.0000000 0.0000000 0.0007987 37.0 70.0 31 83.08 24.52 16.13 0 16.13 0/1
chr1 7890013 . A G . PASS . . . . . . 37.0 70.0 32 247.14 11.81 28.12 0 28.12 0/1
chr1 7890016 rs12749159 G A . PASS . . . . . . 37.0 70.0 29 256.18 26.05 31.03 0 31.03 0/1
chr1 7890024 rs201662971 T G . PASS . . . . . . 37.0 70.0 22 440.17 2.10 59.09 0 59.09 0/1
chr1 7890026 rs199947375 A G . PASS . . . . . . 37.0 70.0 26 474.06 16.48 53.85 0 53.85 0/1
chr1 7890053 rs1776342 G A . PASS . . . . . . 37.0 70.0 33 77.05 4.85 15.15 0 15.15 0/1
chr1 7890055 rs11121034 T A . PASS . . . . . . 37.0 70.0 34 69.90 2.35 14.71 0 14.71 0/1
chr1 7890264 rs1773135 A G . PASS 0.6271000 0.7435000 0.8522000 0.6650000 0.6513000 0.7009000 37.0 70.0 23 925.24 0.00 100.00 0 100.00 1/1
chr1 7907971 rs707473 C A . PASS 0.2708000 0.1499000 0.3720000 0.1759000 0.2638000 0.2540000 36.37 70.0 19 741.99 0.00 100.00 0 100.00 1/1
chr1 7913430 rs228648 G A . PASS 0.4259000 0.4092000 0.3522000 0.5706000 0.6339000 0.4784000 36.48 70.0 69 1000.00 0.00 100.00 0 100.00 1/1
chr1 7928181 rs2066980 G A . PASS 0.5726000 0.4568000 0.4752000 0.6600000 0.5890000 0.5577000 36.52 70.0 99 1000.00 0.00 100.00 0 100.00 1/1
chr1 7928191 rs3034084 CA C . PASS 0.8510000 0.9236000 0.9663000 0.9006000 0.9141000 0.9065000 36.18 70.0 105 1000.00 0.00 100.00 0 100.00 1/1
chr1 7998963 rs226476 T G . PASS 0.9992000 0.9813000 1.0000000 0.9602000 0.9939000 0.9880000 36.2 70.0 15 574.91 0.00 100.00 0 100.00 1/1
chr1 8361312 rs12027657 A T . PASS 0.3351000 0.5965000 0.6865000 0.6740000 0.5184000 0.5459000 36.69 68.9 289 1000.00 3.95 39.79 0 39.79 0/1
chr1 8361340 rs70990555,rs139409971 TGGGATTCATCAATATCCTGTAGCTGGGC T . PASS . . . . . . 36.03 68.7 253 1000.00 10.57 45.06 0 45.06 0/1
chr1 8361620 rs35288526 T C . PASS 0.3336000 0.5965000 0.6806000 0.6740000 0.5174000 0.5441000 35.82 69.48 280 1000.00 5.71 40.00 0 40.00 0/1
chr1 8390384 rs56125713 G C . PASS 0.0416000 0.1225000 0.0575000 0.1759000 0.3149000 0.1364000 36.73 70.0 108 1000.00 1.85 41.67 0 41.67 0/1
chr1 8390495 rs1058619 A G . PASS 0.7368000 0.7824000 0.8482000 0.7366000 0.7924000 0.7764000 36.23 70.0 78 1000.00 0.00 100.00 0 100.00 1/1
chr1 8395441 rs2305016 T C . PASS 0.2761000 0.3977000 0.2857000 0.5785000 0.3916000 0.3782000 36.43 70.0 34 730.36 6.16 61.76 0 61.76 0/1
chr1 8395560 rs7535752 G T . PASS 0.0961000 0.1859000 0.0228000 0.1839000 0.3160000 0.1544000 36.71 69.51 123 1000.00 3.25 33.33 0 33.33 0/1
chr1 8404093 rs1055236 C T . PASS 0.1051000 0.1902000 0.1260000 0.3062000 0.2362000 0.1871000 36.03 70.0 65 1000.00 6.57 56.92 0 56.92 0/1
chr1 8415418 rs2289733 G A . PASS 0.3222000 0.1902000 0.0575000 0.2008000 0.3609000 0.2338000 37.0 70.0 15 214.77 9.52 46.67 0 46.67 0/1
chr1 8418644 rs11121172 C A . PASS 0.8638000 0.7795000 0.8978000 0.6690000 0.7495000 0.7975000 36.22 70.0 98 1000.00 1.51 46.94 0 46.94 0/1
chr1 8418650 rs1058766 T C . PASS 0.8691000 0.7795000 0.8998000 0.6710000 0.7515000 0.8001000 36.49 70.0 102 1000.00 1.46 46.08 0 46.08 0/1
chr1 8421203 rs13596 T C . PASS 0.8411000 0.7925000 0.9206000 0.6819000 0.7464000 0.7999000 37.0 70.0 63 1000.00 4.46 50.79 0 50.79 0/1
chr1 8422676 rs2252865 T C . PASS 0.8381000 0.7839000 0.9196000 0.6819000 0.7485000 0.7981000 37.0 70.0 36 443.96 18.25 38.89 0 38.89 0/1
chr1 8425798 rs3765972 C T . PASS 0.4092000 0.1945000 0.0575000 0.1958000 0.3098000 0.2464000 37.0 70.0 21 238.48 3.57 38.10 0 38.10 0/1
chr1 8425900 rs3753275 T C . PASS 0.4130000 0.1945000 0.0575000 0.1978000 0.3119000 0.2482000 36.58 70.0 127 1000.00 0.25 44.88 0 44.88 0/1
chr1 8557691 rs7530745 A C . PASS 0.8487000 0.6225000 0.8323000 0.5845000 0.5072000 0.6943000 34.0 70.0 14 76.31 28.57 28.57 0 28.57 0/1
chr1 8716543 rs3737670 G C . PASS 0.6150000 0.6254000 0.8194000 0.5785000 0.4519000 0.6184000 35.8 69.4 25 293.83 24.00 40.00 0 40.00 0/1
chr1 8925331 rs72641527 G A . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 36.33 70.0 87 1000.00 6.32 41.38 0 41.38 0/1
chr1 8926285 rs3831913 A AG . PASS 0.1800000 0.3948000 0.1706000 0.5606000 0.3569000 0.3189000 35.15 70.0 28 386.67 19.78 46.43 0 46.43 0/1
chr1 8930369 rs2781060 T C . PASS 0.6967000 0.8516000 0.9157000 0.8111000 0.6810000 0.7821000 35.67 70.0 13 292.32 0.00 69.23 0 69.23 0/1
chr1 8930385 rs2765511 G A . PASS 0.6967000 0.8516000 0.9137000 0.8111000 0.6810000 0.7817000 36.14 70.0 19 483.12 11.28 73.68 0 73.68 0/1
chr1 9006104 rs5772343 T TC . PASS 0.1014000 0.3833000 0.2510000 0.4254000 0.3476000 0.2837000 37.0 70.0 12 166.45 0.00 50.00 0 50.00 0/1
chr1 9009214 rs2274326 C T . PASS 0.0877000 0.3804000 0.2341000 0.4155000 0.3282000 0.2706000 34.6 70.0 12 128.25 10.00 41.67 0 41.67 0/1
chr1 9009406 rs2274327 C T . PASS 0.0809000 0.3775000 0.2431000 0.4155000 0.3282000 0.2702000 36.49 70.0 141 1000.00 2.17 49.65 0 49.65 0/1
chr1 9009444 rs2274328 A C . PASS 0.5598000 0.4712000 0.4127000 0.5358000 0.5000000 0.5014000 36.5 69.83 206 1000.00 1.51 58.74 0 58.74 0/1
chr1 9034815 rs70985563,rs35753212 C CAGA . PASS 0.9523000 0.5605000 0.8165000 0.5060000 0.7832000 0.7480000 36.0 70.0 36 967.13 11.11 75.00 0 77.78 0/1
chr1 9063602 rs4908804 G C . PASS 0.3260000 0.4957000 0.7063000 0.4652000 0.5787000 0.5034000 36.54 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 9063646 rs4908805 T C . PASS 0.4077000 0.4424000 0.6429000 0.3638000 0.4980000 0.4687000 37.0 70.0 10 146.28 0.00 50.00 0 50.00 0/1
chr1 9064838 rs72644324 G A . PASS 0.0000000 0.0058000 0.0000000 0.0020000 0.0020000 0.0015974 36.52 70.0 105 1000.00 3.62 47.62 0 47.62 0/1
chr1 9074932 rs1556757 G A . PASS 0.4826000 0.5317000 0.5437000 0.3579000 0.3282000 0.4465000 36.17 70.0 66 956.19 3.97 43.94 0 43.94 0/1
chr1 9084924 rs2027222 T C . PASS 0.7859000 0.8213000 0.9563000 0.7326000 0.7996000 0.8171000 37.0 70.0 13 95.48 0.00 30.77 0 30.77 0/1
chr1 9165685 rs72637739 G A . PASS 0.0113000 0.2651000 0.1905000 0.2147000 0.1319000 0.1470000 36.81 70.0 132 1000.00 10.02 46.97 0 46.97 0/1
chr1 9165818 rs12753196 C A . PASS 0.0840000 0.0836000 0.0417000 0.1332000 0.1135000 0.0911000 37.0 70.0 14 297.17 15.87 64.29 0 64.29 0/1
chr1 9171238 rs12135666 G T . PASS 0.0113000 0.2680000 0.1915000 0.2137000 0.1319000 0.1474000 36.14 69.29 54 946.41 9.26 51.85 0 51.85 0/1
chr1 9299947 rs2268176 T G . PASS 0.1142000 0.2637000 0.3998000 0.2406000 0.1319000 0.2212000 37.0 70.0 11 97.35 22.73 36.36 0 36.36 0/1
chr1 9305445 rs34603401 A C . PASS 0.0053000 0.1023000 0.0010000 0.1630000 0.1411000 0.0761000 36.28 70.0 100 1000.00 8.00 50.00 0 50.00 0/1
chr1 9307033 rs7524046 G A . PASS 0.1074000 0.2622000 0.4038000 0.2445000 0.1411000 0.2226000 36.84 69.74 160 1000.00 5.15 48.12 0 48.12 0/1
chr1 9307138 rs11121350 T C . PASS 0.2867000 0.2810000 0.4196000 0.2445000 0.1411000 0.2758000 36.17 70.0 183 1000.00 0.60 47.54 0 47.54 0/1
chr1 9307230 rs12032814 T A . PASS 0.2088000 0.2695000 0.4067000 0.2435000 0.1411000 0.2508000 35.98 69.57 94 1000.00 8.51 50.00 0 50.00 0/1
chr1 9307308 rs56110957 T TG . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 37.0 70.0 14 533.71 0.00 100.00 0 100.00 1/1
chr1 9309746 rs732950 G T . PASS 0.6460000 0.5288000 0.4792000 0.3907000 0.3160000 0.4804000 36.72 69.77 180 1000.00 2.49 48.33 0 48.33 0/1
chr1 9323910 rs6688832 G A . PASS 0.4932000 0.3732000 0.4812000 0.2485000 0.3119000 0.3896000 36.76 70.0 92 1000.00 4.35 54.35 0 54.35 0/1
chr1 9324213 rs17368528 C T . PASS 0.0053000 0.1138000 0.0685000 0.1302000 0.2035000 0.0968000 36.6 70.0 87 946.79 3.22 34.48 0 34.48 0/1
chr1 9324571 rs9434742 T C . PASS 0.4970000 0.4207000 0.1657000 0.4115000 0.4990000 0.4030000 36.61 70.0 61 1000.00 4.87 50.82 0 50.82 0/1
chr1 9324670 rs9434743 A G . PASS 0.5106000 0.4280000 0.1538000 0.4016000 0.4939000 0.4022000 36.65 70.0 123 1000.00 5.87 56.10 0 56.10 0/1
chr1 9599823 rs148840119 A G . PASS 0.5386000 0.1700000 0.3105000 0.1720000 0.1840000 0.2987000 37.0 69.9 46 706.26 1.24 45.65 0 45.65 0/1
chr1 9627521 rs6698575 A G . PASS 0.4592000 0.1671000 0.3115000 0.1750000 0.1840000 0.2782000 37.0 70.0 42 425.90 23.81 33.33 0 33.33 0/1
chr1 9642329 rs56026893 C T . PASS 0.1301000 0.0922000 0.2867000 0.1720000 0.1677000 0.1721000 37.0 70.0 19 411.58 14.04 63.16 0 63.16 0/1
chr1 9658465 rs9430181 T G . PASS 0.7057000 0.8948000 0.7212000 0.8141000 0.7924000 0.7738000 36.25 70.0 35 514.35 12.86 45.71 0 45.71 0/1
chr1 9658707 rs9430182 G A . PASS 0.6846000 0.7767000 0.6964000 0.8121000 0.7924000 0.7464000 35.97 70.0 122 1000.00 3.62 47.54 0 47.54 0/1
chr1 9658809 rs9430183 A G . PASS 0.6853000 0.8934000 0.7222000 0.8141000 0.7924000 0.7684000 37.0 70.0 28 384.49 28.57 42.86 0 42.86 0/1
chr1 9661061 rs9430184 A G . PASS 0.6891000 0.8934000 0.7212000 0.8141000 0.7924000 0.7692000 37.0 70.0 11 268.58 6.82 72.73 0 72.73 0/1
chr1 9670834 rs4926472 C T . PASS 0.5008000 0.7651000 0.6468000 0.8022000 0.7249000 0.6711000 36.4 69.33 130 1000.00 4.62 46.15 0 46.15 0/1
chr1 9672091 rs4073293 G A . PASS 0.5045000 0.7651000 0.6458000 0.8022000 0.7249000 0.6719000 37.0 70.0 10 62.74 20.00 30.00 0 30.00 0/1
chr1 9777451 rs34287026 G GGA . PASS 0.0408000 0.2896000 0.0030000 0.4662000 0.1493000 0.1743000 37.0 70.0 11 408.41 0.00 100.00 0 100.00 1/1
chr1 9780736 . T G . PASS . . . . . . 30.33 70.0 37 167.91 118.92 24.32 0 24.32 0/1
chr1 9780738 . T G . PASS . . . . . . 32.2 70.0 31 54.92 148.39 16.13 0 16.13 0/1
chr1 9780743 . T G . PASS . . . . . . 34.6 70.0 35 251.72 131.43 28.57 0 28.57 0/1
chr1 9780749 . G GGC . PASS . . . . . . 34.0 70.0 36 313.81 122.22 27.78 0 33.33 0/1
chr1 9781412 rs12735071 C G . PASS 0.0439000 0.2882000 0.0020000 0.4911000 0.1421000 0.1783000 37.0 70.0 25 1000.00 0.00 100.00 0 100.00 1/1
chr1 9782556 rs11589267 C T . PASS 0.0424000 0.2781000 0.0000000 0.4543000 0.1258000 0.1655000 36.27 70.0 99 1000.00 0.00 100.00 0 100.00 1/1
chr1 9796038 rs72633875 C T . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 35.85 69.23 112 1000.00 3.02 46.43 0 46.43 0/1
chr1 9804719 rs72633876 G A . PASS 0.0212000 0.0029000 0.0000000 0.0010000 0.0000000 0.0061901 36.43 70.0 47 691.23 1.42 44.68 0 44.68 0/1
chr1 9816620 rs6680090 T C . PASS 0.9962000 0.9625000 0.9990000 0.9543000 0.9888000 0.9822000 37.0 70.0 22 883.47 0.00 100.00 0 100.00 1/1
chr1 9883878 rs6686034 T C . PASS 0.9992000 1.0000000 1.0000000 1.0000000 1.0000000 0.9998000 36.2 70.0 15 579.06 0.00 100.00 0 100.00 1/1
chr1 10068175 rs11578833 G A . PASS 0.0023000 0.0922000 0.0714000 0.0169000 0.0736000 0.0455000 36.45 70.0 38 760.09 2.39 57.89 0 57.89 0/1
chr1 10189532 rs72638958 A G . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 36.08 70.0 35 393.20 20.22 37.14 0 37.14 0/1
chr1 10190884 rs2295294 A T . PASS 0.6778000 0.5288000 0.3869000 0.3917000 0.3998000 0.4868000 36.34 69.56 91 1000.00 0.00 100.00 0 100.00 1/1
chr1 10318652 rs12402052 C G . PASS 0.0560000 0.3199000 0.2887000 0.3052000 0.2638000 0.2300000 36.33 70.0 68 1000.00 8.82 52.94 0 52.94 0/1
chr1 10319049 rs4845930 G A . PASS 0.6952000 0.5144000 0.3601000 0.4831000 0.4744000 0.5170000 35.35 70.0 96 1000.00 6.13 53.12 0 53.12 0/1
chr1 10322054 rs4846209 G A . PASS 0.3411000 0.3833000 0.3472000 0.3579000 0.2812000 0.3399000 35.8 70.0 72 967.90 5.56 41.67 0 41.67 0/1
chr1 10322153 rs4846210 A G . PASS 0.0598000 0.3199000 0.2887000 0.3052000 0.2638000 0.2310000 35.5 70.0 30 199.38 1.67 26.67 0 26.67 0/1
chr1 10327407 rs12141246 A T . PASS 0.4486000 0.4006000 0.3919000 0.3608000 0.2832000 0.3806000 37.0 70.0 16 165.85 16.67 37.50 0 37.50 0/1
chr1 10328338 rs1339458 C T . PASS 0.1452000 0.3228000 0.2887000 0.3052000 0.2638000 0.2540000 37.0 70.0 69 1000.00 1.19 49.28 0 49.28 0/1
chr1 10342629 rs3748576 G A . PASS 0.9818000 0.7334000 0.5030000 0.6213000 0.6442000 0.7127000 37.0 70.0 18 331.05 2.22 55.56 0 55.56 0/1
chr1 10355834 rs3753037 C T . PASS 0.1823000 0.3256000 0.2887000 0.3052000 0.2628000 0.2640000 36.64 70.0 67 1000.00 4.34 49.25 0 49.25 0/1
chr1 10357406 rs3748577 A G . PASS 0.3116000 0.3732000 0.3472000 0.3340000 0.2771000 0.3251000 37.0 70.0 37 816.88 7.99 62.16 0 62.16 0/1
chr1 10384176 rs3831405,rs200163420 C CTTGAAA . PASS 0.0575000 0.3199000 0.2877000 0.3091000 0.2720000 0.2326000 36.33 70.0 26 368.93 2.56 46.15 0 46.15 0/1
chr1 10394536 rs2276100 C G . PASS 0.3351000 0.3732000 0.3462000 0.3380000 0.2873000 0.3339000 37.0 70.0 26 302.82 16.92 38.46 0 38.46 0/1
chr1 10420918 rs3748578 G A . PASS 0.2761000 0.3329000 0.2817000 0.3091000 0.2720000 0.2909000 37.0 70.0 16 211.76 5.36 43.75 0 43.75 0/1
chr1 10420937 rs3748579 C T . PASS 0.3351000 0.3761000 0.3462000 0.3380000 0.2863000 0.3341000 37.0 70.0 20 325.03 10.00 50.00 0 50.00 0/1
chr1 10425117 rs34161257 AT A . PASS 0.7103000 0.5115000 0.3591000 0.4861000 0.4898000 0.5240000 34.47 70.0 24 474.26 13.33 62.50 0 62.50 0/1
chr1 10431158 rs17411502 T C . PASS 0.1233000 0.3213000 0.2817000 0.3091000 0.2720000 0.2490000 35.91 70.0 29 327.70 28.84 37.93 0 37.93 0/1
chr1 10435170 rs11121551 T C . PASS 0.3351000 0.3833000 0.3472000 0.3628000 0.2904000 0.3411000 36.25 70.0 40 503.45 7.50 40.00 0 40.00 0/1
chr1 10435324 rs11121552 C A . PASS 0.0575000 0.3199000 0.2827000 0.3091000 0.2720000 0.2316000 35.91 70.0 48 713.84 7.20 45.83 0 45.83 0/1
chr1 10459779 rs3737155 G A . PASS 0.3434000 0.3732000 0.3403000 0.3380000 0.2853000 0.3345000 36.1 70.0 87 1000.00 12.36 45.98 0 45.98 0/1
chr1 10460485 rs1049887 T C . PASS 0.0658000 0.3199000 0.2817000 0.3111000 0.2710000 0.2338000 35.8 68.6 50 628.42 4.00 40.00 0 40.00 0/1
chr1 10473196 rs2229687 C T . PASS 0.3457000 0.3732000 0.3403000 0.3380000 0.2853000 0.3351000 36.06 69.96 102 1000.00 3.92 50.00 0 50.00 0/1
chr1 10479635 rs2298570 C G . PASS 0.7277000 0.5115000 0.3383000 0.4851000 0.4571000 0.5178000 36.54 70.0 67 835.73 15.15 38.81 0 38.81 0/1
chr1 10479678 rs1889309 G A . PASS 0.1286000 0.3213000 0.2808000 0.3091000 0.2710000 0.2500000 37.0 70.0 76 783.03 4.00 32.89 0 32.89 0/1
chr1 10502307 rs33919161 AT A . PASS 0.7784000 0.8156000 0.8641000 0.9314000 0.8262000 0.8409000 34.92 70.0 24 907.40 0.00 100.00 0 100.00 1/1
chr1 10511589 rs666103 T C . PASS 0.8759000 0.8213000 0.8591000 0.9344000 0.8292000 0.8676000 36.88 70.0 96 1000.00 0.00 100.00 0 100.00 1/1
chr1 10534915 rs72640366 A G . PASS 0.0008000 0.0000000 0.0000000 0.0020000 0.0010000 0.0007987 37.0 70.0 20 366.81 14.55 55.00 0 55.00 0/1
chr1 10596341 rs12375 C T . PASS 0.0658000 0.4265000 0.2004000 0.3141000 0.2464000 0.2280000 36.08 70.0 56 860.99 3.57 46.43 0 46.43 0/1
chr1 10596388 rs2480779 A G . PASS 0.8290000 0.9841000 1.0000000 1.0000000 1.0000000 0.9527000 36.52 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 10702814 rs35619052 G A . PASS 0.0113000 0.1599000 0.0030000 0.2843000 0.1820000 0.1184000 35.47 70.0 71 1000.00 3.60 66.20 0 66.20 0/1
chr1 10704888 rs4845940 G C . PASS 0.0499000 0.0346000 0.0258000 0.0288000 0.0174000 0.0323000 37.0 70.0 49 860.15 1.31 51.02 0 51.02 0/1
chr1 10705110 rs4845941 G A . PASS 0.0507000 0.0331000 0.0268000 0.0288000 0.0174000 0.0325000 36.39 70.0 109 1000.00 5.16 54.13 0 54.13 0/1
chr1 10708142 rs778228 A G . PASS 0.5431000 0.1945000 0.2421000 0.2068000 0.3517000 0.3293000 36.47 70.0 147 1000.00 2.70 46.26 0 46.26 0/1
chr1 10710849 rs3215814 G GC . PASS 0.5356000 0.1931000 0.2411000 0.2078000 0.3456000 0.3259000 37.0 70.0 26 291.40 9.23 38.46 0 38.46 0/1
chr1 10713765 rs284294 T C . PASS 0.7194000 0.4539000 0.3095000 0.5646000 0.5971000 0.5451000 36.5 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 10714436 rs35604552 C T . PASS 0.0522000 0.1499000 0.0030000 0.2684000 0.1779000 0.1238000 36.37 70.0 76 1000.00 2.63 50.00 0 50.00 0/1
chr1 10720601 rs28403334 G A . PASS 0.0015000 0.0288000 0.0060000 0.0239000 0.0051000 0.0113820 37.0 70.0 62 950.49 2.07 45.16 0 45.16 0/1
chr1 10725498 rs284322 G A . PASS 0.2216000 0.1412000 0.1498000 0.1690000 0.1912000 0.1795000 37.0 70.0 87 1000.00 1.15 41.38 0 41.38 0/1
chr1 10964170 rs12732550 A G . PASS 0.6021000 0.4539000 0.4454000 0.4543000 0.4468000 0.4900000 36.53 70.0 129 1000.00 0.00 100.00 0 100.00 1/1
chr1 11080723 rs143130606 T TG . PASS 0.9917000 0.9049000 0.9226000 0.8410000 0.8885000 0.9153000 36.4 70.0 20 772.32 0.00 100.00 0 100.00 1/1
chr1 11087524 rs1782455 G A . PASS 0.2973000 0.7983000 0.8651000 0.8400000 0.7965000 0.6875000 34.6 70.0 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 11090916 rs12711521 C A . PASS 0.1710000 0.7536000 0.6657000 0.8201000 0.6810000 0.5813000 36.44 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 11095039 rs6695096 C T . PASS 0.8548000 0.8415000 0.8661000 0.8390000 0.8057000 0.8425000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 11104845 rs9430347 T C . PASS 0.9077000 0.8401000 0.8839000 0.7962000 0.7802000 0.8462000 37.0 68.18 11 424.00 0.00 100.00 0 100.00 1/1
chr1 11105106 rs2273345 C T . PASS 0.1710000 0.7219000 0.7698000 0.7724000 0.6258000 0.5775000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 11106935 rs72647262 G A . PASS 0.0015000 0.0144000 0.0000000 0.0060000 0.0010000 0.0037939 36.08 70.0 118 1000.00 5.88 43.22 0 44.07 0/1
chr1 11119899 rs7545802 T C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.54 69.74 78 1000.00 0.00 100.00 0 100.00 1/1
chr1 11126569 rs2791659 C A . PASS 0.2035000 0.7550000 0.7837000 0.7416000 0.7219000 0.6060000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 11126941 rs6701726 C T . PASS 0.2035000 0.7550000 0.7837000 0.7416000 0.7219000 0.6060000 35.15 70.0 13 483.51 0.00 100.00 0 100.00 1/1
chr1 11128001 rs2791657 A G . PASS 0.2035000 0.7550000 0.7897000 0.7416000 0.7219000 0.6072000 36.7 70.0 79 1000.00 0.00 100.00 0 100.00 1/1
chr1 11128654 rs2791655 G A . PASS 0.2020000 0.7406000 0.7827000 0.7227000 0.6738000 0.5903000 37.0 70.0 25 1000.00 0.00 100.00 0 100.00 1/1
chr1 11129848 rs2791653 A G . PASS 0.3699000 0.8314000 0.9415000 0.7674000 0.8701000 0.7264000 37.0 70.0 15 591.07 0.00 100.00 0 100.00 1/1
chr1 11132217 rs1130683 G A . PASS 0.2035000 0.7550000 0.7837000 0.7416000 0.7229000 0.6062000 36.13 70.0 83 1000.00 0.00 100.00 0 100.00 1/1
chr1 11133956 . A AAAG . PASS . . . . . . 35.8 70.0 29 1000.00 16.33 65.52 0 100.00 0/1
chr1 11134157 rs2748876 T G . PASS 0.4977000 0.8415000 0.9415000 0.7694000 0.8701000 0.7620000 37.0 70.0 22 879.32 0.00 100.00 0 100.00 1/1
chr1 11137778 rs2259886 C T . PASS 0.0598000 0.7032000 0.7411000 0.7416000 0.6247000 0.5333000 37.0 70.0 17 674.61 0.00 100.00 0 100.00 1/1
chr1 11140620 rs201134081,rs70977543 AACAC A . PASS . . . . . . 36.42 69.97 32 1000.00 2.82 96.88 0 100.00 1/1
chr1 11140626 rs61773686 C A . PASS . . . . . . 36.44 69.97 33 1000.00 0.23 78.79 0 96.97 0/1
chr1 11141187 rs2258621 C G . PASS 0.5378000 0.8415000 0.9405000 0.7694000 0.8701000 0.7724000 36.42 70.0 165 1000.00 0.57 99.39 0 100.00 1/1
chr1 11187618 . AT A . PASS . . . . . . 37.0 70.0 10 94.95 40.00 40.00 0 40.00 0/1
chr1 11187893 rs1770344 T C . PASS 0.9667000 0.9942000 1.0000000 0.9980000 1.0000000 0.9900000 36.76 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 11205058 rs1057079 C T . PASS 0.0635000 0.7017000 0.8165000 0.7356000 0.6217000 0.5475000 36.18 69.55 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 11288633 rs4845986 G C . PASS 0.2239000 0.7622000 0.8770000 0.7237000 0.7761000 0.6382000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 11288758 rs1064261 G A . PASS 0.3351000 0.8141000 0.9187000 0.7237000 0.8650000 0.7005000 36.37 70.0 76 1000.00 0.00 100.00 0 100.00 1/1
chr1 11292666 rs10864495 T A . PASS 0.0923000 0.6902000 0.7917000 0.6988000 0.6278000 0.5423000 37.0 70.0 21 837.55 0.00 100.00 0 100.00 1/1
chr1 11293147 rs11121702 C T . PASS 0.3116000 0.8112000 0.9187000 0.7237000 0.8681000 0.6945000 35.4 69.85 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 11293200 rs7541998 C T . PASS 0.3124000 0.8112000 0.9187000 0.7237000 0.8681000 0.6947000 36.82 69.76 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 11301714 rs1135172 A G . PASS 0.2239000 0.7622000 0.8780000 0.7237000 0.7822000 0.6396000 36.6 69.83 121 1000.00 0.00 100.00 0 100.00 1/1
chr1 11451939 rs7511819 G A . PASS 0.5303000 0.5043000 0.5169000 0.3867000 0.6258000 0.5138000 35.88 70.0 79 1000.00 3.64 40.51 0 40.51 0/1
chr1 11561593 rs2817580 G A . PASS 0.1430000 0.6311000 0.2718000 0.6590000 0.3047000 0.3718000 37.0 69.23 54 891.03 0.00 48.15 0 48.15 0/1
chr1 11574366 rs10864515 C G . PASS 0.2602000 0.1801000 0.4484000 0.1302000 0.2556000 0.2600000 37.0 70.0 21 276.10 0.00 42.86 0 42.86 0/1
chr1 11575331 rs41274530 A G . PASS 0.0809000 0.1715000 0.4435000 0.1302000 0.2536000 0.2101000 35.91 70.0 30 324.69 1.21 36.67 0 36.67 0/1
chr1 11575375 rs2594318 T A . PASS 0.3124000 0.6441000 0.2758000 0.6511000 0.3129000 0.4191000 35.83 70.0 78 1000.00 15.82 52.56 0 52.56 0/1
chr1 11579470 rs2072994 G A . PASS 0.0545000 0.6556000 0.2698000 0.6471000 0.3599000 0.3598000 36.14 70.0 111 1000.00 0.00 100.00 0 100.00 1/1
chr1 11579608 rs34563951 G A . PASS 0.0008000 0.0115000 0.0000000 0.0189000 0.0123000 0.0079872 35.96 70.0 41 780.82 1.91 56.10 0 56.10 0/1
chr1 11708736 rs1055547 T C . PASS 0.3480000 0.6196000 0.4077000 0.7783000 0.4550000 0.5050000 36.25 70.0 62 1000.00 17.54 51.61 0 51.61 0/1
chr1 11709052 rs4397658 C G . PASS 0.6278000 0.6052000 0.4345000 0.4960000 0.6053000 0.5549000 35.96 69.13 23 897.06 0.00 100.00 0 100.00 1/1
chr1 11714368 rs2272983 T G . PASS 0.8207000 0.8732000 0.7659000 0.7972000 0.7536000 0.7991000 36.25 70.0 79 1000.00 8.70 40.51 0 40.51 0/1
chr1 11718743 . G C . PASS . . . . . . 31.0 70.0 33 78.65 133.33 18.18 0 18.18 0/1
chr1 11728894 rs3125818 G A . PASS 0.0726000 0.1758000 0.1498000 0.1173000 0.2004000 0.1364000 36.51 70.0 157 1000.00 2.97 46.50 0 46.50 0/1
chr1 11731927 rs3215521 AG A . PASS . . . . . . 37.0 70.0 24 428.74 5.13 54.17 0 54.17 0/1
chr1 11735262 rs2233027 C T . PASS 0.0537000 0.1960000 0.1488000 0.1899000 0.2178000 0.1520000 37.0 70.0 16 170.00 25.00 37.50 0 37.50 0/1
chr1 11735652 rs2233025 G A . PASS 0.0250000 0.2795000 0.1964000 0.1789000 0.1708000 0.1542000 37.0 70.0 34 449.98 18.49 41.18 0 41.18 0/1
chr1 11735841 rs2233024 C A . PASS 0.0537000 0.1960000 0.1488000 0.1899000 0.2178000 0.1520000 36.2 70.0 41 1000.00 9.59 73.17 0 73.17 0/1
chr1 11735877 rs2233022 A G . PASS 0.0250000 0.2795000 0.1964000 0.1789000 0.1728000 0.1546000 37.0 70.0 19 328.04 26.32 52.63 0 52.63 0/1
chr1 11737051 rs2294638 G C . PASS 0.9259000 0.6369000 0.4246000 0.4771000 0.5787000 0.6270000 37.0 70.0 23 921.09 0.00 100.00 0 100.00 1/1
chr1 11740358 rs7417320 A G . PASS 0.4039000 0.5130000 0.4256000 0.4026000 0.4724000 0.4365000 35.5 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 11771988 rs17037327 A G . PASS 0.0938000 0.0821000 0.0655000 0.1262000 0.1125000 0.0966000 36.74 69.57 81 1000.00 11.22 56.79 0 56.79 0/1
chr1 11772303 rs1883574 A G . PASS 0.9841000 0.8631000 0.8641000 0.7366000 0.7577000 0.8492000 37.0 70.0 11 268.58 13.64 72.73 0 72.73 0/1
chr1 11772340 rs2336034 G A . PASS 0.0930000 0.0821000 0.0655000 0.1262000 0.1125000 0.0964000 35.29 68.57 23 459.07 3.73 60.87 0 60.87 0/1
chr1 11779762 rs12117076 C T . PASS 0.0696000 0.2248000 0.0268000 0.3449000 0.2219000 0.1675000 35.59 70.0 79 1000.00 2.90 43.04 0 43.04 0/1
chr1 11796168 rs17875908,rs146190997,rs149788052,rs140821677 CGGGCG C . PASS 0.9584000 0.9957000 1.0000000 1.0000000 1.0000000 0.9884000 36.33 70.0 18 694.82 0.00 100.00 0 100.00 1/1
chr1 11824556 rs4845879 A G . PASS 0.4554000 0.7882000 0.7381000 0.6600000 0.4397000 0.5964000 35.08 70.0 49 816.26 2.12 51.02 0 51.02 0/1
chr1 11824575 rs10864536 T C . PASS 0.6846000 0.8775000 0.8968000 0.7207000 0.6656000 0.7576000 35.67 70.0 37 584.01 2.70 48.65 0 48.65 0/1
chr1 11824578 rs11121825 C T . PASS 0.4539000 0.7867000 0.7381000 0.6600000 0.4397000 0.5958000 36.2 70.0 34 479.74 0.78 44.12 0 44.12 0/1
chr1 11824621 rs11121826 T C . PASS 0.5923000 0.7925000 0.7421000 0.6590000 0.4335000 0.6326000 37.0 70.0 13 137.25 3.08 38.46 0 38.46 0/1
chr1 11825851 rs10218813 G C . PASS 0.6067000 0.7781000 0.7421000 0.6988000 0.4796000 0.6514000 36.37 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 11826630 rs6668699 C T . PASS 0.5431000 0.7752000 0.7302000 0.6958000 0.4714000 0.6296000 36.56 70.0 110 1000.00 0.00 100.00 0 100.00 1/1
chr1 11827180 rs6540995 A G . PASS 0.8858000 0.9870000 1.0000000 1.0000000 1.0000000 0.9681000 36.11 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 11827304 rs6540996 A G . PASS 0.8858000 0.9870000 1.0000000 1.0000000 1.0000000 0.9681000 36.65 69.41 68 1000.00 0.00 100.00 0 100.00 1/1
chr1 11827355 rs6540997 A G . PASS 0.5537000 0.7767000 0.7302000 0.6988000 0.4703000 0.6330000 36.76 69.61 51 1000.00 1.36 96.08 0 100.00 1/1
chr1 11828238 rs4845880 G A . PASS 0.4735000 0.7738000 0.7292000 0.6948000 0.4714000 0.6106000 36.49 70.0 71 1000.00 0.00 100.00 0 100.00 1/1
chr1 11828319 rs4845881 G A . PASS 0.4796000 0.7709000 0.7292000 0.6948000 0.4714000 0.6118000 36.43 70.0 84 1000.00 0.00 100.00 0 100.00 1/1
chr1 11831543 rs72638684 C T . PASS 0.0862000 0.0533000 0.1161000 0.1004000 0.2147000 0.1156000 35.91 70.0 88 1000.00 0.00 37.50 0 37.50 0/1
chr1 11831615 rs6667720 C T . PASS 0.5159000 0.8141000 0.8800000 0.7237000 0.6391000 0.6963000 36.31 69.86 140 1000.00 0.00 100.00 0 100.00 1/1
chr1 11831756 rs6680385 A G . PASS 0.5159000 0.8170000 0.8800000 0.7286000 0.6411000 0.6981000 36.11 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 11832100 rs11121827 T A . PASS 0.3797000 0.7594000 0.7649000 0.6272000 0.4264000 0.5687000 36.54 70.0 41 914.00 5.82 63.41 0 63.41 0/1
chr1 11832311 rs10779764 G C . PASS 0.3790000 0.7594000 0.7649000 0.6272000 0.4264000 0.5685000 37.0 69.58 116 1000.00 2.73 41.38 0 41.38 0/1
chr1 11835455 rs72638698 T G . PASS 0.1362000 0.0576000 0.1141000 0.1034000 0.2147000 0.1296000 36.61 70.0 59 1000.00 7.65 52.54 0 52.54 0/1
chr1 11835556 rs41275456 C T . PASS 0.1362000 0.0576000 0.1141000 0.1034000 0.2147000 0.1296000 36.73 70.0 95 1000.00 1.39 46.32 0 46.32 0/1
chr1 11836440 rs71492357 CTG CCA . PASS . . . . . . 36.62 70.0 16 131.23 35.00 31.25 0 100.00 0/1
chr1 11836440 . CTG CCG . PASS . . . . . . 36.62 70.0 16 131.23 15.91 68.75 0 100.00 0/1
chr1 11836628 rs6699881 T C . PASS 0.5174000 0.8170000 0.8839000 0.7286000 0.6452000 0.7001000 36.54 69.81 104 1000.00 0.00 100.00 0 100.00 1/1
chr1 11836670 rs41275458 C A . PASS 0.1369000 0.0576000 0.1141000 0.1034000 0.2147000 0.1298000 36.55 70.0 105 1000.00 2.86 49.52 0 50.48 0/1
chr1 11836682 rs7538516 C T . PASS 0.3812000 0.7594000 0.7698000 0.6252000 0.4305000 0.5705000 35.98 69.57 100 1000.00 8.13 47.00 0 47.00 0/1
chr1 11838696 rs72640210 A G . PASS 0.1369000 0.0576000 0.1141000 0.1034000 0.2147000 0.1298000 37.0 70.0 38 396.16 2.43 34.21 0 34.21 0/1
chr1 11838762 rs72640211 G A . PASS 0.0303000 0.0101000 0.0020000 0.0686000 0.0491000 0.0331000 37.0 70.0 57 965.54 8.90 49.12 0 49.12 0/1
chr1 11838841 rs56001051 A G . PASS 0.1369000 0.0576000 0.1141000 0.1034000 0.2147000 0.1298000 35.67 70.0 44 562.94 7.58 40.91 0 40.91 0/1
chr1 11838848 rs6697244 G T . PASS 0.3828000 0.7594000 0.7698000 0.6252000 0.4294000 0.5707000 36.54 70.0 42 910.98 4.40 61.90 0 61.90 0/1
chr1 11839009 rs55685198 C T . PASS 0.1369000 0.0576000 0.1141000 0.1034000 0.2147000 0.1298000 36.21 69.34 141 1000.00 2.35 43.26 0 43.26 0/1
chr1 11839034 rs55967531 G A . PASS 0.0877000 0.0548000 0.1141000 0.1034000 0.2147000 0.1164000 36.56 69.27 135 1000.00 5.52 40.74 0 40.74 0/1
chr1 11839201 rs41307759 T A . PASS 0.1490000 0.0591000 0.1141000 0.1034000 0.2147000 0.1332000 34.71 70.0 94 1000.00 12.77 44.68 0 44.68 0/1
chr1 11839226 rs41307757 A G . PASS 0.0303000 0.0101000 0.0020000 0.0686000 0.0491000 0.0331000 37.0 70.0 73 1000.00 5.64 46.58 0 46.58 0/1
chr1 11839792 rs12566905 T C . PASS 0.1369000 0.0576000 0.1190000 0.1034000 0.2147000 0.1308000 37.0 70.0 28 676.89 2.26 67.86 0 67.86 0/1
chr1 11839923 rs12561919 C T . PASS 0.1150000 0.0692000 0.1210000 0.1223000 0.2311000 0.1340000 35.31 70.0 116 1000.00 1.59 54.31 0 55.17 0/1
chr1 11839966 rs4846043 G A . PASS 0.3828000 0.7594000 0.7649000 0.6243000 0.4315000 0.5699000 37.0 69.7 135 1000.00 8.16 49.63 0 49.63 0/1
chr1 11839998 rs4846044 T C . PASS 0.6029000 0.9539000 0.9940000 0.9791000 0.9816000 0.8798000 36.61 69.74 152 1000.00 0.00 100.00 0 100.00 1/1
chr1 11842144 rs10864542 C G . PASS 0.3820000 0.7594000 0.7659000 0.6252000 0.4294000 0.5697000 35.91 70.0 22 344.63 18.18 50.00 0 50.00 0/1
chr1 11844330 rs10864543 C T . PASS 0.1415000 0.7334000 0.7649000 0.6173000 0.4151000 0.4980000 36.49 70.0 83 1000.00 0.36 56.63 0 56.63 0/1
chr1 11844737 rs55890341 A G . PASS 0.0893000 0.0562000 0.1190000 0.1024000 0.2157000 0.1180000 37.0 70.0 29 590.34 17.85 58.62 0 58.62 0/1
chr1 11845113 rs11587953 G A . PASS 0.7617000 0.9741000 1.0000000 1.0000000 1.0000000 0.9335000 35.0 68.33 12 441.74 0.00 100.00 0 100.00 1/1
chr1 11845167 . TT T . PASS . . . . . . 35.15 70.0 47 614.90 4.68 42.55 1 42.55 0/1
chr1 11845167 rs55820567,rs199890035 TTTA T . PASS 0.0893000 0.0562000 0.1190000 0.1024000 0.2157000 0.1180000 35.24 69.05 49 611.89 4.08 42.86 1 100.00 0/1
chr1 11845168 . TT T . PASS . . . . . . 35.73 69.58 48 1000.00 10.00 41.67 1 100.00 0/1
chr1 11845169 rs11586659 T G . PASS 0.4206000 0.8055000 0.8810000 0.7117000 0.5726000 0.6548000 35.73 69.58 48 1000.00 7.14 58.33 1 100.00 0/1
chr1 11845169 . TA T . PASS . . . . . . 35.15 70.0 48 611.89 5.83 41.67 1 41.67 0/1
chr1 11845222 rs55867221 T C . PASS 0.1006000 0.0548000 0.1190000 0.1024000 0.2157000 0.1208000 36.73 69.56 110 1000.00 1.82 40.91 0 40.91 0/1
chr1 11847861 rs1537516 G A . PASS 0.0666000 0.0519000 0.1190000 0.1024000 0.2157000 0.1114000 36.08 70.0 17 447.36 7.24 76.47 0 76.47 0/1
chr1 11847902 rs1537515 C A . PASS 0.0643000 0.0519000 0.1190000 0.1024000 0.2168000 0.1110000 35.43 70.0 39 770.68 7.36 58.97 0 58.97 0/1
chr1 11848068 rs1537514 G C . PASS 0.0885000 0.0548000 0.1190000 0.1024000 0.2157000 0.1176000 36.4 70.0 126 1000.00 4.76 47.62 0 47.62 0/1
chr1 11848879 rs2077360 A G . PASS 0.7504000 0.9741000 1.0000000 1.0000000 1.0000000 0.9305000 36.5 70.0 24 954.99 0.00 100.00 0 100.00 1/1
chr1 11849447 rs868014 A G . PASS 0.7595000 0.9741000 1.0000000 1.0000000 1.0000000 0.9329000 36.73 70.0 90 1000.00 0.00 100.00 0 100.00 1/1
chr1 11851003 rs3818762 G C . PASS 0.1278000 0.1383000 0.2232000 0.2883000 0.4622000 0.2460000 37.0 70.0 44 916.97 8.04 59.09 0 59.09 0/1
chr1 11851118 rs7518348 A G . PASS 0.6528000 0.9683000 0.9960000 0.9970000 0.9980000 0.9022000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 11852300 rs1476413 C T . PASS 0.1452000 0.1398000 0.2351000 0.2803000 0.4601000 0.2512000 37.0 70.0 49 697.22 10.88 42.86 0 42.86 0/1
chr1 11852516 rs17375901 C T . PASS 0.0197000 0.0086000 0.0020000 0.0686000 0.0511000 0.0306000 37.0 70.0 27 387.50 1.85 44.44 0 44.44 0/1
chr1 11854457 rs4846051 G A . PASS 0.6558000 0.9683000 0.9960000 0.9970000 0.9980000 0.9030000 36.0 70.0 84 1000.00 0.00 100.00 0 100.00 1/1
chr1 11854476 rs1801131 T G . PASS 0.1513000 0.1513000 0.2192000 0.3131000 0.4172000 0.2494000 36.71 70.0 78 1000.00 0.38 52.56 0 52.56 0/1
chr1 11854671 rs12121543 C A . PASS . . . . . . 37.0 70.0 24 350.61 0.76 45.83 0 45.83 0/1
chr1 11854755 rs1994798 G A . PASS 0.4228000 0.7507000 0.7540000 0.5964000 0.4714000 0.5793000 37.0 70.0 46 539.17 6.39 36.96 0 36.96 0/1
chr1 11854896 rs2066462 G A . PASS 0.0772000 0.0576000 0.1181000 0.1024000 0.1575000 0.1034000 36.12 70.0 128 1000.00 3.68 53.12 0 53.12 0/1
chr1 11856378 rs1801133 G A . PASS 0.0900000 0.4741000 0.2956000 0.3648000 0.1186000 0.2454000 36.31 70.0 191 1000.00 7.28 54.97 0 54.97 0/1
chr1 11863057 rs2066470 G A . PASS 0.0719000 0.0548000 0.1230000 0.0984000 0.1564000 0.1016000 37.0 69.55 105 1000.00 4.76 41.90 0 41.90 0/1
chr1 11876662 rs17376328 G A . PASS 0.0189000 0.0072000 0.0020000 0.0656000 0.0511000 0.0296000 35.15 70.0 27 405.26 13.11 48.15 0 48.15 0/1
chr1 11879685 rs198393 C T . PASS 0.6157000 0.2565000 0.2312000 0.3956000 0.5215000 0.4259000 35.8 70.0 12 337.10 6.67 83.33 0 83.33 0/1
chr1 11883629 rs198399 T A . PASS 0.8691000 0.2695000 0.2312000 0.3986000 0.5215000 0.4952000 34.6 70.0 10 130.12 0.00 50.00 0 50.00 0/1
chr1 11883731 rs12567136 C T . PASS 0.1082000 0.0778000 0.1250000 0.1402000 0.1881000 0.1294000 36.65 70.0 74 1000.00 1.43 45.95 0 45.95 0/1
chr1 11884555 rs198400 A G . PASS 1.0000000 1.0000000 1.0000000 0.9990000 1.0000000 0.9998000 37.0 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 11887303 rs7537765 A G . PASS 0.2194000 0.0865000 0.1280000 0.1421000 0.1902000 0.1613000 37.0 70.0 28 509.81 3.81 53.57 0 53.57 0/1
chr1 11887316 rs41275478 C A . PASS 0.0915000 0.0576000 0.1230000 0.0994000 0.1564000 0.1074000 37.0 70.0 19 282.12 9.36 47.37 0 47.37 0/1
chr1 11888384 rs198401 A G . PASS 0.8684000 0.2709000 0.2302000 0.4046000 0.5245000 0.4968000 37.0 70.0 17 250.52 7.35 47.06 0 47.06 0/1
chr1 11889468 rs535107 A G . PASS 0.5333000 0.2478000 0.2312000 0.4036000 0.5123000 0.4028000 37.0 70.0 13 220.80 2.20 53.85 0 53.85 0/1
chr1 11894133 rs41275494 A G . PASS 0.0061000 0.0072000 0.0020000 0.0656000 0.0511000 0.0262000 37.0 70.0 78 1000.00 17.52 46.15 0 46.15 0/1
chr1 11897286 rs72640267 G T . PASS 0.0961000 0.0576000 0.1240000 0.1004000 0.1575000 0.1092000 37.0 70.0 51 728.82 20.32 43.14 0 43.14 0/1
chr1 11897592 rs198406 A G . PASS 0.5340000 0.2421000 0.2312000 0.3986000 0.5102000 0.4008000 37.0 70.0 78 1000.00 2.26 64.10 0 64.10 0/1
chr1 11905974 rs5068 A G . PASS 0.0242000 0.0072000 0.0020000 0.0656000 0.0511000 0.0310000 37.0 70.0 49 822.53 2.38 48.98 0 48.98 0/1
chr1 11917620 rs35207557 T TA . PASS 0.3714000 0.2032000 0.0823000 0.3797000 0.3824000 0.2937000 36.2 70.0 33 437.40 3.03 42.42 0 42.42 0/1
chr1 11986553 rs79841670 A AG . PASS . . . . . . 36.87 69.89 176 1000.00 0.00 100.00 0 100.00 1/1
chr1 12004479 . TAC T . PASS . . . . . . 32.25 70.0 14 60.89 35.71 28.57 0 28.57 0/1
chr1 12024380 . T G . PASS . . . . . . 31.67 70.0 38 176.90 152.63 23.68 0 23.68 0/1
chr1 12024384 . T G . PASS . . . . . . 31.45 70.0 38 182.92 142.11 23.68 0 28.95 0/1
chr1 12056440 rs2236056 C T . PASS 0.6936000 0.5533000 0.6349000 0.6581000 0.6851000 0.6536000 37.0 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 12062205 rs2236057 A G . PASS 0.6324000 0.5648000 0.6845000 0.6730000 0.7157000 0.6579000 37.0 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 12067044 rs7550536 T G . PASS 0.4100000 0.4986000 0.5456000 0.6074000 0.6022000 0.5268000 35.5 68.75 16 604.67 0.00 100.00 0 100.00 1/1
chr1 12071680 rs1042842 A G . PASS 0.8903000 0.5879000 0.6994000 0.6769000 0.7127000 0.7324000 36.79 70.0 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 12082926 rs2295283 A G . PASS 0.7950000 0.5980000 0.5516000 0.7276000 0.6115000 0.6693000 36.72 70.0 85 1000.00 0.00 100.00 0 100.00 1/1
chr1 12091210 rs946461 T C . PASS 0.9123000 0.6153000 0.5556000 0.7336000 0.6278000 0.7079000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 12144434 rs1201113 G A . PASS 0.2837000 0.1023000 0.0347000 0.1382000 0.0900000 0.1414000 35.67 70.0 11 298.34 4.04 81.82 0 81.82 0/1
chr1 12157288 rs11569835 T C . PASS 0.0333000 0.0778000 0.0486000 0.1471000 0.0879000 0.0761000 37.0 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 12164391 rs11569850 G C . PASS 0.0053000 0.0879000 0.0665000 0.0666000 0.1012000 0.0601000 37.0 70.0 40 678.39 5.00 50.00 0 50.00 0/1
chr1 12164675 rs11569852 G A . PASS 0.0053000 0.0865000 0.0665000 0.0656000 0.1002000 0.0595000 34.82 70.0 29 315.70 20.06 37.93 0 37.93 0/1
chr1 12170288 rs2297729 G A . PASS 0.0734000 0.0922000 0.0665000 0.0656000 0.0971000 0.0777000 36.48 69.13 82 1000.00 4.03 56.10 0 56.10 0/1
chr1 12175729 rs1763642 C T . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.34 70.0 127 1000.00 0.00 100.00 0 100.00 1/1
chr1 12175818 rs598661 A G . PASS 0.5711000 0.4121000 0.3810000 0.2008000 0.3824000 0.3996000 36.35 70.0 123 1000.00 13.24 44.72 0 44.72 0/1
chr1 12198297 rs476488 T C . PASS 0.5053000 0.1801000 0.3988000 0.1292000 0.1380000 0.2915000 36.08 70.0 65 833.90 4.62 40.00 0 40.00 0/1
chr1 12198635 rs6419481 T C . PASS 0.6755000 0.6844000 0.7173000 0.7376000 0.8047000 0.7228000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 12248942 rs945439 A G . PASS 0.2012000 0.1340000 0.1548000 0.2147000 0.2730000 0.1993000 37.0 70.0 83 1000.00 5.75 53.01 0 53.01 0/1
chr1 12248965 rs945438 A G . PASS 0.1982000 0.1340000 0.1548000 0.2157000 0.2730000 0.1987000 35.7 70.0 69 1000.00 0.86 53.62 0 53.62 0/1
chr1 12249020 rs1815530 C T . PASS 0.1634000 0.1326000 0.1548000 0.2167000 0.2730000 0.1895000 35.91 70.0 22 348.78 9.09 50.00 0 50.00 0/1
chr1 12249031 rs1201157 A G . PASS 0.6520000 0.4380000 0.6954000 0.5835000 0.6217000 0.6114000 33.4 70.0 21 286.01 11.43 47.62 0 47.62 0/1
chr1 12251191 rs472093 T A . PASS 0.0575000 0.0937000 0.1349000 0.1740000 0.2352000 0.1362000 33.8 70.0 27 460.64 2.96 55.56 0 55.56 0/1
chr1 12251765 rs498906 T G . PASS 0.1762000 0.1268000 0.1528000 0.2147000 0.2863000 0.1939000 35.8 70.0 31 275.76 5.16 32.26 0 32.26 0/1
chr1 12251808 rs653667 T G . PASS 0.2247000 0.2089000 0.3581000 0.3499000 0.3742000 0.3037000 36.37 70.0 60 564.41 14.04 31.67 0 31.67 0/1
chr1 12252892 rs1768642 C T . PASS 0.1732000 0.1254000 0.1498000 0.2177000 0.2761000 0.1909000 36.02 70.0 99 1000.00 3.09 49.49 0 49.49 0/1
chr1 12252955 rs1061622 T G . PASS 0.1868000 0.1268000 0.1498000 0.2177000 0.2761000 0.1947000 36.31 70.0 98 1000.00 1.57 53.06 0 53.06 0/1
chr1 12261972 rs5746051 A G . PASS 0.0439000 0.0807000 0.1577000 0.1640000 0.2249000 0.1314000 37.0 70.0 23 190.70 12.42 30.43 0 30.43 0/1
chr1 12262298 rs5746053 G A . PASS 0.1543000 0.1081000 0.1567000 0.1720000 0.2301000 0.1667000 35.59 70.0 53 494.08 20.42 32.08 0 32.08 0/1
chr1 12267265 rs1061624 A G . PASS 0.3026000 0.5562000 0.5109000 0.5318000 0.4601000 0.4565000 36.19 69.78 172 1000.00 0.73 51.74 0 51.74 0/1
chr1 12267270 rs5030792 T G . PASS 0.0030000 0.0432000 0.0010000 0.0547000 0.0092000 0.0197680 36.58 70.0 179 1000.00 2.52 48.04 0 48.04 0/1
chr1 12267292 rs3397 C T . PASS 0.1649000 0.6916000 0.2887000 0.6213000 0.4448000 0.4091000 36.09 70.0 197 1000.00 0.00 100.00 0 100.00 1/1
chr1 12304694 rs79820334 A G . PASS 0.0000000 0.0130000 0.0000000 0.0268000 0.0010000 0.0073882 37.0 70.0 40 640.77 1.32 47.50 0 47.50 0/1
chr1 12401868 rs28551666 A C . PASS 0.7398000 0.7579000 0.8978000 0.7913000 0.8027000 0.7967000 36.57 70.0 141 1000.00 0.00 100.00 0 100.00 1/1
chr1 12418700 rs10864552 T C . PASS 0.9962000 0.9625000 0.9990000 0.9165000 0.9346000 0.9641000 36.22 69.78 92 1000.00 0.00 100.00 0 100.00 1/1
chr1 12567232 rs7554257 A G . PASS 0.9977000 0.9899000 0.9970000 0.9732000 0.9877000 0.9896000 36.43 70.0 21 829.68 0.00 100.00 0 100.00 1/1
chr1 12638964 rs2275875 T C . PASS 0.8011000 0.7291000 0.7282000 0.8469000 0.8988000 0.8047000 36.31 70.0 105 1000.00 4.62 49.52 0 49.52 0/1
chr1 12639018 rs2275874 C T . PASS 0.1036000 0.4856000 0.3591000 0.5239000 0.6104000 0.3914000 37.0 70.0 39 518.47 0.32 41.03 0 41.03 0/1
chr1 12658046 rs12407824 T C . PASS 0.5113000 0.5605000 0.4702000 0.5129000 0.4131000 0.4910000 37.0 70.0 94 1000.00 3.42 54.26 0 54.26 0/1
chr1 12658064 rs58584542 G A . PASS 0.5091000 0.5620000 0.4683000 0.5089000 0.4018000 0.4872000 37.0 70.0 119 1000.00 5.68 51.26 0 51.26 0/1
chr1 12658121 rs6690561 T C . PASS 0.9887000 0.9986000 1.0000000 1.0000000 1.0000000 0.9968000 36.75 70.0 96 1000.00 0.00 100.00 0 100.00 1/1
chr1 12776134 rs3010874 C A . PASS 0.5756000 0.8718000 0.6190000 0.8211000 0.7485000 0.7085000 36.76 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 12776218 rs3000860 A C . PASS 0.8812000 0.8948000 0.7321000 0.8638000 0.9162000 0.8564000 36.83 69.86 145 1000.00 0.00 100.00 0 100.00 1/1
chr1 12776344 rs3000859 A T . PASS 0.4009000 0.8473000 0.6190000 0.8151000 0.7423000 0.6565000 36.17 69.85 130 1000.00 0.00 100.00 0 100.00 1/1
chr1 12779560 rs3010876 T C . PASS 0.9228000 0.8818000 0.7817000 0.8300000 0.8170000 0.8494000 36.61 70.0 115 1000.00 7.73 53.04 0 53.04 0/1
chr1 12779618 rs3010877 T C . PASS 0.9228000 0.8790000 0.7817000 0.8260000 0.8160000 0.8480000 36.33 70.0 112 1000.00 7.01 48.21 0 48.21 0/1
chr1 12853750 rs72472660 G A . PASS . . . . . . 37.0 53.91 29 339.71 5.02 37.93 0 37.93 0/1
chr1 12853805 rs79066220 T G . PASS . . . . . . 37.0 57.82 19 365.67 23.92 57.89 0 57.89 0/1
chr1 12853872 rs4989048 A T . PASS . . . . . . 37.0 69.75 11 97.35 36.36 36.36 0 36.36 0/1
chr1 12854020 . TGA TTT . PASS . . . . . . 36.74 44.43 74 692.36 15.39 31.08 0 31.08 0/1
chr1 12854041 rs76280430 T C . PASS . . . . . . 36.56 43.56 93 803.39 8.60 29.03 0 29.03 0/1
chr1 12854052 rs78573959 C T . PASS . . . . . . 37.0 46.35 111 719.46 6.44 23.42 0 23.42 0/1
chr1 12854068 rs79492089 T C . PASS . . . . . . 37.0 45.36 130 161.04 13.19 10.77 0 10.77 0/1
chr1 12854090 rs79698223 T A . PASS . . . . . . 36.38 43.23 189 999.52 2.77 20.63 0 20.63 0/1
chr1 12854097 rs76193255 T C . PASS 0.1619000 0.3790000 0.3631000 0.4205000 0.3824000 0.3275000 37.0 43.42 194 1000.00 1.34 20.62 0 20.62 0/1
chr1 12854105 rs76648802 A G . PASS . . . . . . 36.71 42.6 217 1000.00 2.76 19.35 0 19.35 0/1
chr1 12854162 rs199893374 C T . PASS . . . . . . 36.47 33.29 235 1000.00 9.46 19.15 0 19.15 0/1
chr1 12854188 rs76030350 T C . PASS . . . . . . 36.5 30.58 230 1000.00 1.74 20.87 0 20.87 0/1
chr1 12854356 rs61775051 T C . PASS . . . . . . 36.35 32.92 209 859.95 16.86 17.70 0 17.70 0/1
chr1 12854414 rs1063769 G A . PASS . . . . . . 36.03 38.41 200 875.03 35.14 18.50 0 18.50 0/1
chr1 12854474 rs1063774 A C . PASS . . . . . . 36.59 40.76 232 464.42 23.28 12.50 0 12.50 0/1
chr1 12854479 rs1063775 C G . PASS 0.1150000 0.0519000 0.0685000 0.0785000 0.1697000 0.1002000 36.56 41.85 224 404.97 27.98 12.05 0 12.05 0/1
chr1 12855835 rs1063795 C G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.28 65.0 199 1000.00 0.00 100.00 0 100.00 1/1
chr1 12855845 rs1063797 G C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.94 65.21 207 1000.00 0.00 100.00 0 100.00 1/1
chr1 12855884 rs78124722 C T . PASS . . . . . . 36.45 44.55 232 176.19 47.65 9.48 0 9.48 0/1
chr1 12856010 rs61775053 C G . PASS . . . . . . 36.89 58.58 543 1000.00 1.88 59.48 0 59.85 0/1
chr1 12856079 rs142994008 C T . PASS . . . . . . 36.5 55.64 727 1000.00 2.96 16.37 0 16.37 0/1
chr1 12856111 rs61775054 C T . PASS . . . . . . 36.08 58.87 572 1000.00 12.48 50.17 0 50.17 0/1
chr1 12856153 rs61775055 G A . PASS . . . . . . 36.5 57.96 339 1000.00 9.10 42.48 0 42.48 0/1
chr1 12887549 rs2994114 T C . PASS 0.5885000 0.7262000 0.9980000 0.7714000 0.8845000 0.7845000 36.18 62.85 146 1000.00 0.00 100.00 0 100.00 1/1
chr1 12888289 rs183802277 A T . PASS . . . . . . 37.0 46.75 20 70.26 30.00 20.00 0 20.00 0/1
chr1 12888310 rs189212178 A G . PASS . . . . . . 37.0 42.83 27 136.88 44.44 22.22 0 22.22 0/1
chr1 12888347 rs200693692 G C . PASS . . . . . . 37.0 45.44 90 820.29 0.74 30.00 0 30.00 0/1
chr1 12888364 rs377612057 G A . PASS . . . . . . 36.64 48.52 119 975.75 15.28 27.73 0 27.73 0/1
chr1 12888371 rs200394590 T G . PASS . . . . . . 36.59 40.97 133 762.45 3.94 21.80 0 21.80 0/1
chr1 12888389 rs1830486 A C . PASS 0.5144000 0.6138000 0.8254000 0.6431000 0.6984000 0.6526000 37.0 61.06 167 170.82 30.43 10.18 0 10.18 0/1
chr1 12888397 rs202156326 C T . PASS 0.0454000 0.0043000 0.0000000 0.0000000 0.0000000 0.0125800 35.84 40.06 166 726.74 14.42 18.67 0 18.67 0/1
chr1 12888415 rs200349667 C T . PASS . . . . . . 36.61 40.97 176 720.67 8.87 17.61 0 17.61 0/1
chr1 12888601 rs113914674,rs5772510 G GC . PASS 0.9992000 1.0000000 1.0000000 0.9990000 1.0000000 0.9996000 36.79 66.9 274 1000.00 0.00 100.00 0 100.00 1/1
chr1 12888629 rs76312011 A G . PASS 0.0008000 0.0029000 0.0079000 0.0000000 0.0061000 0.0033946 36.51 56.55 223 1000.00 23.70 21.97 0 21.97 0/1
chr1 12888706 rs61777005 C A . PASS . . . . . . 36.16 57.82 108 1000.00 10.14 52.78 0 52.78 0/1
chr1 12888752 rs61777006 C T . PASS . . . . . . 37.0 59.48 50 944.84 4.59 54.00 0 54.00 0/1
chr1 12888795 rs61777007 T A . PASS . . . . . . 37.0 65.45 20 362.66 0.00 55.00 0 55.00 0/1
chr1 12898445 rs11121996 C A . PASS 0.5318000 0.8660000 0.6984000 0.8330000 0.8507000 0.7344000 36.3 69.83 86 1000.00 0.85 98.84 0 100.00 1/1
chr1 12898472 rs4301642 C T . PASS 0.9803000 0.9452000 0.9821000 0.8847000 0.9335000 0.9475000 36.38 69.74 116 1000.00 0.00 100.00 0 100.00 1/1
chr1 12898654 rs55954336 A G . PASS 0.3699000 0.5836000 0.4891000 0.4543000 0.4356000 0.4533000 36.17 63.39 116 1000.00 0.84 99.14 0 99.14 1/1
chr1 12898667 rs55971055 C G . PASS 0.0257000 0.1427000 0.2361000 0.1809000 0.1616000 0.1420000 36.5 61.68 115 1000.00 1.21 62.61 0 62.61 0/1
chr1 12898673 rs4453052 G T . PASS 0.8434000 0.8458000 0.8036000 0.7833000 0.8323000 0.8215000 35.8 64.12 114 1000.00 0.26 35.09 0 35.09 0/1
chr1 12898775 rs61775386 C G . PASS 0.8631000 0.5403000 0.6369000 0.6282000 0.6462000 0.6833000 36.71 64.34 128 1000.00 4.19 32.03 0 32.03 0/1
chr1 12898778 rs61775387 T A . PASS 0.8631000 0.5303000 0.6250000 0.6213000 0.6472000 0.6783000 36.71 64.4 123 1000.00 0.70 34.15 0 34.15 0/1
chr1 12898833 rs147676792 G C . PASS 0.0772000 0.0692000 0.0367000 0.1163000 0.1564000 0.0793000 36.48 64.61 69 704.40 8.70 33.33 0 33.33 0/1
chr1 12898953 rs11121997 G A . PASS 0.4221000 0.4078000 0.3690000 0.3579000 0.2730000 0.3674000 37.0 51.56 11 310.35 0.00 81.82 0 81.82 0/1
chr1 12900997 rs5007448 G T . PASS 0.5545000 0.5418000 0.3938000 0.5268000 0.4867000 0.5016000 37.0 63.17 65 268.98 25.64 18.46 0 18.46 0/1
chr1 12907121 . ACA ATG . PASS . . . . . . 37.0 55.0 11 101.50 0.00 36.36 0 36.36 0/1
chr1 12907136 rs5027835 A G . PASS . . . . . . 37.0 60.86 14 217.78 0.00 50.00 0 50.00 0/1
chr1 12907169 rs5027836 A G . PASS . . . . . . 37.0 62.94 34 617.05 0.00 52.94 0 52.94 0/1
chr1 12907199 rs5027837 T A . PASS . . . . . . 36.8 64.95 86 1000.00 3.47 68.60 0 68.60 0/1
chr1 12907212 rs5027838 T A . PASS . . . . . . 36.69 65.77 121 1000.00 1.18 63.64 0 63.64 0/1
chr1 12907277 . C T . PASS . . . . . . 35.91 67.32 227 179.23 6.01 9.69 0 9.69 0/1
chr1 12907282 rs139731855 G C . PASS . . . . . . 36.69 67.42 235 1000.00 3.00 49.36 0 49.36 0/1
chr1 12907283 . GTG GCC . PASS . . . . . . 36.41 67.37 237 1000.00 3.99 47.26 0 47.26 0/1
chr1 12907316 rs112607517 T C . PASS . . . . . . 36.39 67.27 216 1000.00 7.07 45.37 0 45.37 0/1
chr1 12907349 . TCA TTG . PASS . . . . . . 36.08 67.95 154 995.51 30.60 25.32 0 25.97 0/1
chr1 12907777 rs28391533 T C . PASS . . . . . . 36.57 67.12 267 1000.00 46.58 31.09 0 31.09 0/1
chr1 12907781 rs28441396 T C . PASS 0.0000000 0.0014000 0.0020000 0.0000000 0.0000000 0.0005990 36.43 67.21 269 1000.00 46.52 31.23 0 31.23 0/1
chr1 12907798 rs150096254 A C . PASS . . . . . . 36.7 67.45 326 1000.00 33.90 37.12 0 37.12 0/1
chr1 12907800 rs201112865 A G . PASS . . . . . . 36.62 67.31 326 310.97 34.16 9.82 0 9.82 0/1
chr1 12907801 . GCC GTT . PASS . . . . . . 36.23 67.31 330 1000.00 30.32 35.45 0 35.45 0/1
chr1 12907837 rs1736811 C T . PASS 0.0182000 0.0072000 0.0000000 0.0050000 0.0031000 0.0073882 36.27 68.22 453 1000.00 9.80 54.08 0 54.08 0/1
chr1 12907885 rs848418 T C . PASS 0.9614000 0.9121000 0.8125000 0.9433000 0.9254000 0.9139000 36.51 69.77 599 1000.00 3.43 36.89 0 36.89 0/1
chr1 12908236 rs1736809 G T . PASS . . . . . . 34.47 69.79 26 630.72 0.00 73.08 0 73.08 0/1
chr1 12908243 rs1736808 A G . PASS . . . . . . 37.0 69.76 24 605.39 0.00 70.83 0 70.83 0/1
chr1 12908278 rs3860363 C A . PASS 0.5393000 0.5360000 0.4077000 0.5268000 0.4898000 0.5002000 34.0 59.75 14 76.32 0.00 28.57 0 28.57 0/1
chr1 12921600 rs199504163 C T . PASS . . . . . . 35.8 53.56 259 1000.00 41.30 19.31 0 19.31 0/1
chr1 12921642 rs2994093 G A . PASS . . . . . . 36.25 53.02 204 1000.00 20.89 31.37 0 31.37 0/1
chr1 12921716 rs2994094 A G . PASS . . . . . . 37.0 55.36 76 1000.00 0.56 43.42 0 43.42 0/1
chr1 12940068 rs2994082 G A . PASS . . . . . . 37.0 62.0 12 56.72 50.00 25.00 0 25.00 0/1
chr1 12942119 rs75355616 C T . PASS 0.0303000 0.3285000 0.2183000 0.3201000 0.3027000 0.2208000 36.41 61.57 157 1000.00 6.10 38.85 0 38.85 0/1
chr1 12942862 rs61778465 G C . PASS 0.5113000 0.5231000 0.3661000 0.5209000 0.4765000 0.4788000 35.43 68.48 52 731.55 2.68 44.23 0 44.23 0/1
chr1 12953256 rs199702833 T C . PASS . . . . . . 34.0 52.5 16 74.45 50.00 25.00 0 25.00 0/1
chr1 12953268 rs200660038 C G . PASS . . . . . . 36.08 53.77 17 443.22 13.57 76.47 0 76.47 0/1
chr1 12953303 rs201840380 T C . PASS . . . . . . 35.5 54.25 12 253.56 0.00 66.67 0 66.67 0/1
chr1 12979729 rs146836223 G A . PASS . . . . . . 36.56 55.37 569 1000.00 1.47 28.65 0 28.65 0/1
chr1 12979845 rs142026718 T C . PASS . . . . . . 36.53 51.65 483 1000.00 2.22 26.29 0 26.29 0/1
chr1 12986613 rs370210572 CT C . PASS . . . . . . 35.8 44.0 19 103.64 12.63 26.32 0 26.32 0/1
chr1 12987602 rs76625528 T C . PASS . . . . . . 36.6 56.0 199 1000.00 0.33 44.72 0 44.72 0/1
chr1 12987614 rs147031341 A G . PASS 0.4508000 0.4553000 0.3700000 0.4950000 0.5031000 0.4543000 36.44 56.18 201 1000.00 1.94 42.29 0 42.29 0/1
chr1 12987679 rs199598351 A G . PASS . . . . . . 36.39 52.03 137 1000.00 0.92 43.07 0 43.07 0/1
chr1 12987833 . A G . PASS . . . . . . 36.82 53.05 117 1000.00 3.76 55.56 0 55.56 0/1
chr1 12987951 rs148022983 C T . PASS . . . . . . 36.44 50.57 467 1000.00 1.20 41.33 0 41.33 0/1
chr1 13001186 rs200795385 C T . PASS . . . . . . 36.51 55.71 106 1000.00 20.18 46.23 0 46.23 0/1
chr1 13001312 rs76131424 C G . PASS . . . . . . 36.42 62.68 381 1000.00 0.48 53.54 0 54.07 0/1
chr1 13001418 rs150206676 C A . PASS . . . . . . 35.8 54.8 48 224.60 5.00 20.83 0 20.83 0/1
chr1 13001428 rs61779368 C A . PASS 0.0628000 0.0014000 0.0050000 0.0000000 0.0092000 0.0195690 37.0 56.37 27 675.75 7.41 70.37 0 70.37 0/1
chr1 13001445 rs61779369 C T . PASS . . . . . . 37.0 55.88 23 566.62 8.70 69.57 0 69.57 0/1
chr1 13001465 rs201785437 G T . PASS 0.0212000 0.1037000 0.0913000 0.0646000 0.0624000 0.0635000 37.0 50.91 12 387.29 0.00 91.67 0 91.67 0/1
chr1 13012827 . C T . PASS 0.0000000 0.0043000 0.0010000 0.0060000 0.0348000 0.0087859 37.0 52.57 22 193.70 0.00 31.82 0 31.82 0/1
chr1 13036330 rs200053605 G A . PASS . . . . . . 37.0 32.0 24 104.14 91.67 20.83 0 20.83 0/1
chr1 13036447 rs199683676 C G . PASS . . . . . . 36.56 29.78 33 979.84 0.67 81.82 0 81.82 0/1
chr1 13036587 rs77788641 C T . PASS . . . . . . 36.56 47.09 161 1000.00 7.53 68.32 0 68.32 0/1
chr1 13036654 rs201636235 C T . PASS . . . . . . 36.37 45.84 96 460.23 9.87 19.79 0 19.79 0/1
chr1 13037823 rs202065754 A G . PASS . . . . . . 37.0 52.46 15 465.39 3.08 86.67 0 86.67 0/1
chr1 13037860 rs201365789 A G . PASS . . . . . . 35.29 55.36 16 480.14 0.00 87.50 0 87.50 0/1
chr1 13037864 rs200307391 T A . PASS . . . . . . 34.23 55.54 15 425.22 1.03 86.67 0 86.67 0/1
chr1 13037877 . T C . PASS . . . . . . 34.43 58.71 16 468.13 1.79 87.50 0 87.50 0/1
chr1 13038064 . T C . PASS . . . . . . 37.0 56.57 11 226.81 25.97 63.64 0 63.64 0/1
chr1 13038327 rs199598633 G T . PASS . . . . . . 35.5 53.12 31 514.38 3.63 51.61 0 51.61 0/1
chr1 13038350 rs200724140 T C . PASS . . . . . . 35.67 52.22 30 241.17 2.22 30.00 0 30.00 0/1
chr1 13052789 rs61780142 G A . PASS . . . . . . 36.56 68.45 426 1000.00 2.75 51.41 0 51.41 0/1
chr1 13052871 rs79792138 C T . PASS . . . . . . 36.55 67.69 246 1000.00 0.35 43.09 0 43.09 0/1
chr1 13052907 rs72474524 T C . PASS 0.4909000 0.4899000 0.6746000 0.5179000 0.4867000 0.5323000 36.54 66.57 179 1000.00 1.29 72.63 0 72.63 0/1
chr1 13111584 rs200257916 T C . PASS 0.4206000 0.1455000 0.1042000 0.1133000 0.1984000 0.2137000 37.0 70.0 11 268.59 18.18 72.73 0 72.73 0/1
chr1 13123728 . G A . PASS . . . . . . 37.0 60.72 33 1000.00 3.76 87.88 0 87.88 0/1
chr1 13123748 . C T . PASS . . . . . . 37.0 50.5 23 65.39 47.83 17.39 0 17.39 0/1
chr1 13123781 . GCC GTT . PASS . . . . . . 35.5 50.5 16 83.47 25.00 25.00 1 25.00 0/1
chr1 13123782 . C T . PASS 0.0280000 0.3732000 0.2589000 0.3638000 0.2546000 0.2340000 37.0 50.5 13 95.48 19.23 30.77 1 30.77 0/1
chr1 13123783 . C T . PASS 0.0280000 0.3732000 0.2589000 0.3638000 0.2546000 0.2340000 34.0 50.5 13 83.47 19.23 30.77 1 30.77 0/1
chr1 13123790 . A G . PASS . . . . . . 37.0 57.0 13 95.48 19.23 30.77 0 30.77 0/1
chr1 13141561 rs200582121 C T . PASS . . . . . . 37.0 55.38 25 226.46 23.00 32.00 0 32.00 0/1
chr1 13141835 rs79437155 C T . PASS . . . . . . 37.0 60.82 11 424.00 0.00 100.00 0 100.00 1/1
chr1 13142623 rs28564800 A G . PASS . . . . . . 37.0 56.75 20 74.41 80.00 20.00 0 20.00 0/1
chr1 13173016 rs1852947 A G . PASS 0.3177000 0.5317000 0.4246000 0.5577000 0.4560000 0.4441000 37.0 70.0 24 967.01 0.00 100.00 0 100.00 1/1
chr1 13183236 . CCT CTC . PASS . . . . . . 37.0 67.57 69 55.26 26.92 10.14 0 10.14 0/1
chr1 13183243 rs138897759 T C . PASS . . . . . . 37.0 67.57 69 52.25 24.02 10.14 0 10.14 0/1
chr1 13183247 . CTC CAA . PASS . . . . . . 36.5 68.92 83 164.37 46.18 14.46 0 14.46 0/1
chr1 13183439 rs28713604 T C . PASS 0.5764000 0.6556000 0.7163000 0.6640000 0.8149000 0.6797000 36.53 68.89 459 1000.00 0.00 100.00 0 100.00 1/1
chr1 13183511 rs72864546 T C . PASS . . . . . . 36.74 66.46 375 1000.00 21.31 49.60 0 49.60 0/1
chr1 13183528 rs76937665 A C . PASS . . . . . . 36.5 65.9 327 1000.00 31.21 44.34 0 44.34 0/1
chr1 13183530 rs200046163 A G . PASS . . . . . . 36.56 68.26 332 84.05 31.70 8.13 0 8.13 0/1
chr1 13183531 . GCC GTT . PASS . . . . . . 36.62 65.81 331 1000.00 31.48 43.20 0 43.20 0/1
chr1 13219149 rs61780824 G A . PASS . . . . . . 36.26 39.94 203 1000.00 1.77 32.02 0 32.02 0/1
chr1 13328864 . A G . PASS . . . . . . 36.08 51.0 23 429.31 3.34 56.52 0 56.52 0/1
chr1 13328887 rs200631669 C A . PASS . . . . . . 37.0 56.25 24 225.31 8.33 33.33 0 33.33 0/1
chr1 13329337 . A G . PASS . . . . . . 37.0 44.91 21 363.79 4.33 52.38 0 52.38 0/1
chr1 13329350 . A T . PASS . . . . . . 37.0 44.91 19 365.66 3.83 57.89 0 57.89 0/1
chr1 13329354 . T C . PASS . . . . . . 37.0 44.91 19 369.81 3.83 57.89 0 57.89 0/1
chr1 13329391 . T C . PASS . . . . . . 37.0 43.78 15 298.32 4.44 60.00 0 60.00 0/1
chr1 13353767 rs202084856 G A . PASS . . . . . . 36.37 47.42 22 682.94 7.18 86.36 0 86.36 0/1
chr1 13353779 . T C . PASS 0.0363000 0.0331000 0.0347000 0.0318000 0.0961000 0.0463000 35.67 57.44 34 229.11 58.82 26.47 0 26.47 0/1
chr1 13353785 . GGG GAA . PASS . . . . . . 36.12 52.59 55 1000.00 15.51 61.82 1 61.82 0/1
chr1 13353786 rs199553194 G A . PASS 0.0182000 0.3617000 0.2530000 0.3141000 0.2025000 0.2085000 36.65 52.65 48 1000.00 19.85 70.83 1 70.83 0/1
chr1 13353787 rs200531848 G A . PASS 0.0166000 0.3184000 0.2163000 0.2714000 0.1595000 0.1777000 35.97 52.71 50 1000.00 19.43 70.00 1 70.00 0/1
chr1 13353794 . T C . PASS . . . . . . 36.0 52.5 63 267.16 7.14 19.05 0 19.05 0/1
chr1 13353799 . T A . PASS 0.1346000 0.0692000 0.0407000 0.0596000 0.1544000 0.0954000 37.0 55.47 69 382.25 59.13 21.74 0 21.74 0/1
chr1 13353802 . C G . PASS 0.1346000 0.0692000 0.0407000 0.0596000 0.1544000 0.0954000 36.25 54.75 74 396.96 60.47 21.62 0 21.62 0/1
chr1 13353841 rs201496009 C T . PASS 0.0166000 0.0216000 0.0397000 0.0070000 0.0337000 0.0234000 36.11 57.7 108 746.24 35.19 25.00 0 25.00 0/1
chr1 13364810 . A G . PASS . . . . . . 35.91 52.55 11 411.98 0.00 100.00 0 100.00 1/1
chr1 13364827 . G T . PASS . . . . . . 37.0 50.44 11 306.20 0.00 81.82 0 81.82 0/1
chr1 13364883 . TCG TCA . PASS . . . . . . 36.38 49.38 41 171.15 20.91 51.22 0 70.73 0/1
chr1 13364883 . TCG TAG . PASS . . . . . . 36.38 49.38 41 171.15 21.95 19.51 0 70.73 0/1
chr1 13364926 . T G . PASS . . . . . . 36.53 49.61 91 1000.00 8.71 56.04 0 56.04 0/1
chr1 13364929 . A G . PASS . . . . . . 36.8 50.4 91 1000.00 2.23 65.93 0 65.93 0/1
chr1 13364939 . C G . PASS . . . . . . 36.72 49.93 93 1000.00 8.40 46.24 0 46.24 0/1
chr1 13365011 . A C . PASS . . . . . . 37.0 33.38 70 295.69 19.12 18.57 0 18.57 0/1
chr1 13365032 . C T . PASS . . . . . . 37.0 49.43 40 431.92 10.00 35.00 0 35.00 0/1
chr1 13365169 . TCA TTG . PASS . . . . . . 37.0 30.88 23 190.70 11.96 34.78 0 34.78 0/1
chr1 13365187 . C G . PASS . . . . . . 37.0 25.67 19 156.82 5.26 31.58 0 31.58 0/1
chr1 13365776 rs202229355 C G . PASS . . . . . . 35.5 49.88 27 204.26 10.19 29.63 0 29.63 0/1
chr1 13365921 rs199562274 A G . PASS . . . . . . 37.0 61.14 23 190.70 26.09 30.43 0 30.43 0/1
chr1 13365954 rs201245174 A C . PASS . . . . . . 37.0 67.5 17 246.38 11.76 47.06 0 47.06 0/1
chr1 13368030 rs200317962 C T . PASS . . . . . . 37.0 39.0 11 143.27 21.82 45.45 0 45.45 0/1
chr1 13368406 . C T . PASS . . . . . . 37.0 47.67 14 176.01 0.00 42.86 0 42.86 0/1
chr1 13368436 . T G . PASS . . . . . . 37.0 47.67 21 150.79 9.52 28.57 0 28.57 0/1
chr1 13368444 . ACA ATG . PASS . . . . . . 36.37 55.21 22 682.94 16.75 86.36 0 86.36 0/1
chr1 13368536 . C G . PASS . . . . . . 36.17 57.41 37 1000.00 5.22 78.38 0 78.38 0/1
chr1 13368550 . C G . PASS . . . . . . 37.0 55.05 28 798.05 15.58 78.57 0 78.57 0/1
chr1 13368552 . G A . PASS . . . . . . 37.0 47.67 29 130.86 48.28 20.69 0 20.69 0/1
chr1 13368564 . A G . PASS . . . . . . 37.0 53.75 26 724.68 20.77 76.92 0 76.92 0/1
chr1 13368588 . G A . PASS . . . . . . 35.67 59.89 23 262.23 34.78 39.13 0 39.13 0/1
chr1 13368622 . G C . PASS . . . . . . 37.0 47.5 22 147.78 81.82 27.27 0 27.27 0/1
chr1 13368628 rs199603036 G T . PASS . . . . . . 37.0 38.29 19 198.58 9.02 36.84 0 36.84 0/1
chr1 13379394 . T C . PASS 0.4607000 0.2795000 0.1399000 0.3310000 0.5930000 0.3708000 37.0 59.94 41 1000.00 1.25 85.37 0 85.37 0/1
chr1 13379548 . T C . PASS . . . . . . 37.0 50.0 11 143.27 10.91 45.45 0 45.45 0/1
chr1 13381066 rs201862351 C T . PASS . . . . . . 37.0 48.58 14 426.63 7.14 85.71 0 85.71 0/1
chr1 13413926 rs202170459 A G . PASS 0.1906000 0.4424000 0.4752000 0.4702000 0.4254000 0.3848000 36.23 44.94 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 13413961 rs200141404 G C . PASS 0.2451000 0.4885000 0.4256000 0.5050000 0.3804000 0.3938000 36.83 51.71 69 1000.00 0.00 100.00 0 100.00 1/1
chr1 13414059 rs141192612 C T . PASS 0.0613000 0.3588000 0.3859000 0.3867000 0.2618000 0.2724000 36.32 57.61 159 1000.00 0.64 99.37 0 99.37 1/1
chr1 13448180 rs199555791 A G . PASS . . . . . . 36.2 50.0 43 1000.00 30.54 69.77 0 69.77 0/1
chr1 13448183 . GCG GTC . PASS . . . . . . 36.59 49.79 41 1000.00 31.88 68.29 0 70.73 0/1
chr1 13448199 rs143762964 C T . PASS . . . . . . 36.71 52.45 57 1000.00 23.06 73.68 0 73.68 0/1
chr1 13448283 rs80327699 A G . PASS . . . . . . 36.61 55.75 216 1000.00 0.00 100.00 0 100.00 1/1
chr1 13448351 rs71183793 T C . PASS . . . . . . 36.33 51.59 160 1000.00 0.00 100.00 0 100.00 1/1
chr1 13634704 rs201118136 C T . PASS . . . . . . 37.0 45.0 48 73.67 37.50 12.50 0 12.50 0/1
chr1 13634723 rs202107783 A G . PASS 0.1460000 0.1095000 0.0794000 0.1054000 0.2178000 0.1334000 35.4 49.4 89 302.20 19.18 16.85 0 16.85 0/1
chr1 13634797 rs200530087 C T . PASS 0.0219000 0.0159000 0.0010000 0.0050000 0.0368000 0.0163740 36.29 50.18 170 153.94 30.59 10.00 0 10.00 0/1
chr1 13695685 rs201167498 G A . PASS . . . . . . 36.08 48.46 13 453.75 0.00 92.31 0 100.00 1/1
chr1 13695787 rs202245256 C G . PASS 0.9864000 0.9971000 0.9990000 0.9821000 0.9949000 0.9912000 37.0 53.26 83 1000.00 0.33 97.59 0 97.59 1/1
chr1 13695816 rs148990958 G A . PASS . . . . . . 35.73 55.89 127 1000.00 0.66 96.06 0 96.85 1/1
chr1 13695974 rs142734546 T C . PASS 0.9947000 0.9957000 0.9980000 0.9831000 0.9980000 0.9938000 35.91 60.14 22 859.44 0.00 100.00 0 100.00 1/1
chr1 13717050 . C A . PASS . . . . . . 37.0 66.75 14 255.41 0.00 57.14 0 57.14 0/1
chr1 13719052 rs141370897 T G . PASS 0.3086000 0.3732000 0.2976000 0.3360000 0.3988000 0.3385000 37.0 46.57 16 207.62 0.00 43.75 0 43.75 0/1
chr1 13940864 rs2486188 C G . PASS 0.9985000 0.9885000 1.0000000 0.9304000 0.9867000 0.9814000 36.34 70.0 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 14059395 rs33969518 T C . PASS 0.0098000 0.2565000 0.2282000 0.2107000 0.2086000 0.1671000 37.0 70.0 31 375.46 0.54 38.71 0 38.71 0/1
chr1 14099763 rs10803426 C T . PASS 0.2005000 0.5403000 0.3730000 0.3111000 0.2679000 0.3177000 37.0 70.0 23 441.32 4.68 56.52 0 56.52 0/1
chr1 14105139 rs2076324 T A . PASS 0.2080000 0.5375000 0.3988000 0.3270000 0.4908000 0.3712000 37.0 70.0 37 478.56 3.96 40.54 0 40.54 0/1
chr1 14105298 rs1203678 G A . PASS 0.2012000 0.5389000 0.3730000 0.3101000 0.2618000 0.3163000 37.0 69.41 43 1000.00 4.51 79.07 0 79.07 0/1
chr1 14106394 rs2308040,rs59028030 A ACTC . PASS . . . . . . 36.65 70.0 43 836.76 15.31 55.81 0 58.14 0/1
chr1 14109114 rs1203651 A G . PASS 0.2322000 0.5418000 0.3988000 0.3280000 0.4223000 0.3650000 36.5 70.0 65 762.37 3.72 36.92 0 36.92 0/1
chr1 14143003 rs1046331 A G . PASS 0.9319000 0.8573000 0.7073000 0.8569000 0.7270000 0.8213000 36.88 70.0 100 1000.00 0.00 100.00 0 100.00 1/1
chr1 14149622 rs2697968 T C . PASS 0.7307000 0.7723000 0.6210000 0.7893000 0.6718000 0.7147000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 14149844 rs1046333 T A . PASS . . . . . . 37.0 68.57 14 545.15 0.00 100.00 0 100.00 1/1
chr1 14985358 rs7512426 C T . PASS 0.3880000 0.3977000 0.4435000 0.4891000 0.5706000 0.4565000 34.88 70.0 67 1000.00 10.18 50.75 0 50.75 0/1
chr1 15018660 rs3737686 C T . PASS 0.1838000 0.3559000 0.4861000 0.5099000 0.5992000 0.4151000 37.0 70.0 13 53.71 46.15 23.08 0 23.08 0/1
chr1 15344403 rs869712 G T . PASS 0.5098000 0.5807000 0.6925000 0.5408000 0.5644000 0.5733000 36.52 70.0 55 830.08 6.55 45.45 0 45.45 0/1
chr1 15386628 rs2073091 T C . PASS 0.1188000 0.1873000 0.6151000 0.1700000 0.2883000 0.2716000 37.0 70.0 22 235.47 13.64 36.36 0 36.36 0/1
chr1 15390145 rs2076565 A G . PASS 0.6301000 0.2435000 0.7133000 0.2406000 0.3497000 0.4603000 37.0 70.0 56 926.77 3.70 48.21 0 48.21 0/1
chr1 15390178 rs2076564 C T . PASS 0.5908000 0.2392000 0.6746000 0.2376000 0.3078000 0.4327000 35.0 70.0 45 786.53 2.22 53.33 0 53.33 0/1
chr1 15390211 rs2076563 G A . PASS 0.6014000 0.2435000 0.6736000 0.2435000 0.3088000 0.4373000 36.14 70.0 27 459.04 2.65 51.85 0 51.85 0/1
chr1 15427982 rs502918 G A . PASS 0.4221000 0.6081000 0.8393000 0.5905000 0.5879000 0.5980000 36.4 70.0 59 1000.00 3.14 67.80 0 67.80 0/1
chr1 15428358 rs477953 T C . PASS 0.8782000 0.9467000 0.9901000 0.9483000 0.9796000 0.9441000 37.0 60.0 12 98.49 33.33 33.33 0 33.33 0/1
chr1 15430031 rs45547637 A T . PASS 0.0030000 0.0130000 0.0000000 0.0378000 0.0153000 0.0131790 37.0 70.0 30 416.12 16.92 43.33 0 43.33 0/1
chr1 15439083 rs140963536 A AAGGTCTTTTTTTTCTTCTCCCAGCGGC . PASS 0.4735000 0.4308000 0.3204000 0.5040000 0.4335000 0.4351000 36.33 70.0 32 225.58 56.25 21.88 0 28.12 0/1
chr1 15497727 rs6429722 T C . PASS 0.9085000 0.9582000 0.9940000 0.9523000 0.9847000 0.9563000 36.04 70.0 68 783.09 0.24 36.76 0 36.76 0/1
chr1 15541537 rs3753314 C T . PASS 0.6914000 0.9035000 0.9762000 0.8857000 0.8967000 0.8572000 35.5 69.58 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 15546077 rs3753313 G A . PASS 0.0741000 0.2003000 0.0754000 0.3499000 0.3661000 0.2043000 35.0 70.0 55 756.44 0.76 43.64 0 43.64 0/1
chr1 15578195 rs1622686 T C . PASS 0.6838000 0.3372000 0.4127000 0.4105000 0.5634000 0.5028000 37.0 70.0 12 182.03 0.00 50.00 0 50.00 0/1
chr1 15613478 rs536364 G A . PASS 0.5840000 0.5865000 0.6508000 0.5895000 0.4632000 0.5753000 36.57 70.0 84 1000.00 0.00 100.00 0 100.00 1/1
chr1 15613643 rs534653 T C . PASS 0.6717000 0.6974000 0.8194000 0.7038000 0.7301000 0.7228000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 15616139 rs486557 G A . PASS 0.2073000 0.2089000 0.0417000 0.3260000 0.2587000 0.2081000 35.8 70.0 95 1000.00 5.68 52.63 0 52.63 0/1
chr1 15616183 rs487338 T C . PASS 0.6225000 0.3501000 0.3026000 0.4185000 0.5327000 0.4619000 36.68 70.0 63 1000.00 0.67 60.32 0 60.32 0/1
chr1 15651062 rs3765356 A G . PASS 0.3782000 0.3573000 0.0724000 0.3469000 0.3967000 0.3111000 36.54 70.0 71 827.84 1.95 36.62 0 36.62 0/1
chr1 15653503 rs7532559 A G . PASS 0.4304000 0.3573000 0.0724000 0.3469000 0.3967000 0.3249000 37.0 70.0 17 166.99 3.92 35.29 0 35.29 0/1
chr1 15653563 rs3765357 C T . PASS 0.1293000 0.3228000 0.0486000 0.3290000 0.3395000 0.2210000 34.47 70.0 45 577.69 3.04 42.22 0 42.22 0/1
chr1 15655944 rs56017972 G A . PASS 0.0015000 0.0000000 0.0000000 0.0050000 0.0000000 0.0013978 36.17 70.0 74 932.12 0.75 39.19 0 39.19 0/1
chr1 15668276 rs763821 G A . PASS 0.4849000 0.4078000 0.0407000 0.4006000 0.3722000 0.3458000 37.0 70.0 42 676.52 5.71 47.62 0 47.62 0/1
chr1 15687059 rs4661330 A G . PASS 0.2579000 0.2147000 0.2887000 0.2853000 0.2035000 0.2530000 37.0 70.0 39 602.00 1.71 46.15 0 46.15 0/1
chr1 15694129 . C G . PASS . . . . . . 29.8 70.0 26 57.95 146.15 19.23 0 19.23 0/1
chr1 15702297 rs2496342 T G . PASS 0.7693000 0.3055000 0.2937000 0.2644000 0.3681000 0.4295000 36.4 70.0 44 654.34 5.45 45.45 0 45.45 0/1
chr1 15707137 rs3737690 C T . PASS 0.0121000 0.0865000 0.1518000 0.1491000 0.2505000 0.1246000 37.0 70.0 19 411.58 8.77 63.16 0 63.16 0/1
chr1 15707984 rs2473333 G A . PASS 0.2859000 0.1960000 0.2589000 0.2336000 0.3589000 0.2718000 37.0 70.0 27 345.74 9.43 40.74 0 40.74 0/1
chr1 15708540 rs1010294 A G . PASS 0.7700000 0.3055000 0.2589000 0.2624000 0.3671000 0.4221000 36.39 70.0 105 1000.00 4.97 56.19 0 56.19 0/1
chr1 15724003 rs2253371 A G . PASS 0.4342000 0.2248000 0.2540000 0.2594000 0.3640000 0.3201000 36.0 70.0 22 390.54 6.06 54.55 0 54.55 0/1
chr1 15724033 rs2253372 A G . PASS 0.9062000 0.5807000 0.7063000 0.7356000 0.6933000 0.7450000 35.0 70.0 11 173.03 0.00 54.55 0 54.55 0/1
chr1 15755248 rs3765372 C T . PASS 0.0424000 0.1671000 0.2460000 0.1501000 0.2873000 0.1701000 36.5 70.0 54 795.47 7.41 44.44 0 44.44 0/1
chr1 15769876 rs35149641 G GC . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 37.0 70.0 17 659.02 0.00 100.00 0 100.00 1/1
chr1 15788269 rs3737696 A C . PASS 0.5469000 0.6916000 0.7440000 0.7376000 0.7096000 0.6767000 37.0 70.0 12 461.62 0.00 100.00 0 100.00 1/1
chr1 15812432 rs6429745 A G . PASS 0.9773000 0.9942000 1.0000000 1.0000000 1.0000000 0.9932000 36.54 69.9 155 1000.00 0.00 100.00 0 100.00 1/1
chr1 15813751 rs2011159 C T . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.37 69.47 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 15813836 rs61742388 T C . PASS 0.0477000 0.0043000 0.0079000 0.0060000 0.0010000 0.0161740 37.0 69.66 102 1000.00 9.26 56.86 0 56.86 0/1
chr1 16058489 rs72647153 C T . PASS 0.0000000 0.0000000 0.0000000 0.0020000 0.0000000 0.0003994 36.48 70.0 176 1000.00 5.37 39.20 0 39.20 0/1
chr1 16096893 rs12146078 C T . PASS 0.0976000 0.2161000 0.0784000 0.1968000 0.4213000 0.1933000 36.62 70.0 94 1000.00 0.00 100.00 0 100.00 1/1
chr1 16096934 rs10927851 C T . PASS 0.3843000 0.6931000 0.8284000 0.6501000 0.7556000 0.6424000 36.27 69.97 132 1000.00 0.00 100.00 0 100.00 1/1
chr1 16119833 rs34748580 GA G . PASS 0.4796000 0.3718000 0.0258000 0.3579000 0.4182000 0.3369000 35.8 70.0 10 360.66 0.00 100.00 0 100.00 1/1
chr1 16133838 rs66673012 A T . PASS 0.3638000 0.0965000 0.0099000 0.0994000 0.0757000 0.1462000 35.97 69.89 79 1000.00 11.21 44.30 0 44.30 0/1
chr1 16133987 rs7417535 T C . PASS 0.3646000 0.0965000 0.0099000 0.0994000 0.0757000 0.1464000 36.08 69.03 126 1000.00 0.44 51.59 0 51.59 0/1
chr1 16134072 rs61744357 C T . PASS 0.3638000 0.0965000 0.0099000 0.0994000 0.0757000 0.1462000 36.65 69.84 146 1000.00 4.76 47.26 0 47.26 0/1
chr1 16154691 rs6676646 A G . PASS 0.3971000 0.1354000 0.0109000 0.1451000 0.1145000 0.1773000 34.82 70.0 11 399.97 0.00 100.00 0 100.00 1/1
chr1 16154699 rs369618828,rs113870177 ACACT A . PASS 0.3971000 0.1354000 0.0109000 0.1451000 0.1145000 0.1773000 35.92 70.0 12 443.19 0.00 100.00 0 100.00 1/1
chr1 16155107 rs10927860 G C . PASS 0.9773000 0.6542000 0.7550000 0.8529000 0.8661000 0.8411000 37.0 69.83 12 461.62 0.00 100.00 0 100.00 1/1
chr1 16167799 rs12135073 A G . PASS 0.0182000 0.2680000 0.0060000 0.2813000 0.2495000 0.1484000 37.0 68.95 25 685.92 19.37 76.00 0 76.00 0/1
chr1 16186873 . G GGT . PASS . . . . . . 35.0 70.0 13 54.88 10.26 23.08 0 30.77 0/1
chr1 16186937 rs71574142 AGT A . PASS 0.1263000 0.3761000 0.1111000 0.3062000 0.2812000 0.2242000 32.25 70.0 12 66.91 0.00 33.33 0 33.33 0/1
chr1 16256007 rs848209 T C . PASS 0.9758000 0.7118000 0.3214000 0.5577000 0.5941000 0.6490000 36.28 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 16259813 rs848210 A G . PASS 0.9758000 0.7118000 0.3214000 0.5577000 0.5941000 0.6490000 36.18 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 16262465 . A C . PASS . . . . . . 35.0 70.0 36 54.88 172.22 13.89 0 16.67 0/1
chr1 16262471 . A C . PASS . . . . . . 29.0 70.0 32 69.66 162.50 18.75 0 18.75 0/1
chr1 16265403 rs115404746 A G . PASS 0.0000000 0.0000000 0.0000000 0.0030000 0.0000000 0.0005990 36.48 70.0 99 1000.00 1.93 46.46 0 46.46 0/1
chr1 16265422 rs848214 A G . PASS 0.6679000 0.6902000 0.3244000 0.5537000 0.5920000 0.5641000 36.85 70.0 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 16265904 rs41269155 T A . PASS 0.0613000 0.0375000 0.0079000 0.0616000 0.0481000 0.0447000 36.52 69.6 103 1000.00 2.68 48.54 0 48.54 0/1
chr1 16269477 rs57569573 T TG . PASS 0.4357000 0.0749000 0.0040000 0.0696000 0.0521000 0.1504000 35.0 70.0 16 351.24 11.36 68.75 0 68.75 0/1
chr1 16269737 rs4661672 C T . PASS 0.1112000 0.0548000 0.0040000 0.0626000 0.0481000 0.0597000 36.0 70.0 27 375.50 7.41 44.44 0 44.44 0/1
chr1 16271156 rs12134932 C A . PASS 0.2073000 0.0562000 0.0010000 0.0785000 0.0276000 0.0839000 37.0 70.0 170 1000.00 6.33 46.47 0 47.65 0/1
chr1 16272250 rs848217 A G . PASS 0.4720000 0.6311000 0.3175000 0.5020000 0.5440000 0.4830000 36.43 69.68 138 1000.00 6.21 45.65 0 45.65 0/1
chr1 16296695 rs41339145 T G . PASS 0.3245000 0.1196000 0.0813000 0.1362000 0.2321000 0.1913000 37.0 70.0 15 168.85 6.67 40.00 0 40.00 0/1
chr1 16342237 rs1739840 A G . PASS 0.7216000 0.4582000 0.7639000 0.5944000 0.6421000 0.6526000 36.81 70.0 120 1000.00 2.42 51.67 0 51.67 0/1
chr1 16342350 rs761759 A T . PASS 0.7216000 0.4582000 0.7639000 0.5944000 0.6431000 0.6528000 35.0 70.0 12 165.87 16.67 50.00 0 50.00 0/1
chr1 16344360 rs732286 A G . PASS 0.7103000 0.4553000 0.7639000 0.5934000 0.6421000 0.6490000 36.32 69.62 138 1000.00 10.28 38.41 0 38.41 0/1
chr1 16344402 rs945416 G A . PASS 0.7103000 0.4553000 0.7639000 0.5934000 0.6421000 0.6490000 36.75 70.0 108 1000.00 6.02 44.44 0 44.44 0/1
chr1 16344494 rs1572381 G A . PASS 0.7088000 0.4553000 0.7639000 0.5924000 0.6421000 0.6484000 37.0 70.0 25 477.06 6.86 56.00 0 56.00 0/1
chr1 16345619 rs945422 T C . PASS 0.7648000 0.4524000 0.7718000 0.5676000 0.6319000 0.6573000 36.25 70.0 78 1000.00 0.00 61.54 0 61.54 0/1
chr1 16350262 rs1537803 A G . PASS 0.0817000 0.0447000 0.0060000 0.0755000 0.0481000 0.0535000 36.61 70.0 73 1000.00 4.42 42.47 0 42.47 0/1
chr1 16351137 rs9442190 C G . PASS 0.7194000 0.4467000 0.7688000 0.5636000 0.6299000 0.6428000 37.0 69.0 13 426.54 2.56 92.31 0 92.31 0/1
chr1 16351275 rs10927887 A G . PASS 0.7201000 0.4467000 0.7688000 0.5636000 0.6299000 0.6430000 36.57 69.38 215 1000.00 6.90 52.09 0 52.09 0/1
chr1 16353400 rs9442216 T C . PASS 0.7708000 0.5994000 0.9752000 0.6750000 0.6800000 0.7512000 34.0 69.92 20 372.55 6.67 60.00 0 60.00 0/1
chr1 16354280 rs10927889 G C . PASS 0.6498000 0.5346000 0.8750000 0.5934000 0.5194000 0.6424000 35.0 69.83 11 168.88 3.03 54.55 0 54.55 0/1
chr1 16354590 rs12126269 A T . PASS 0.1014000 0.1960000 0.2123000 0.1879000 0.1033000 0.1546000 35.59 70.0 99 1000.00 2.85 51.52 0 51.52 0/1
chr1 16355525 rs7366320 G A . PASS . . . . . . 35.5 69.88 22 223.46 11.36 36.36 0 36.36 0/1
chr1 16355577 rs59235129 TGGG T . PASS 0.0605000 0.0086000 0.0020000 0.0199000 0.0031000 0.0179710 36.5 69.92 55 257.93 61.82 21.82 0 21.82 0/1
chr1 16355614 rs45457595 G A . PASS 0.0825000 0.0447000 0.0069000 0.0755000 0.0481000 0.0539000 36.27 66.42 99 1000.00 20.20 33.33 0 33.33 0/1
chr1 16355877 rs34398185 G A . PASS 0.0809000 0.0447000 0.0060000 0.0755000 0.0481000 0.0533000 37.0 70.0 42 676.52 17.62 47.62 0 47.62 0/1
chr1 16356187 rs1972359 C T . PASS 0.0809000 0.0447000 0.0060000 0.0755000 0.0481000 0.0533000 34.0 70.0 40 312.35 8.33 30.00 0 30.00 0/1
chr1 16356497 rs7411607 C G . PASS 0.0809000 0.0447000 0.0060000 0.0755000 0.0481000 0.0533000 37.0 69.87 171 1000.00 4.77 43.86 0 43.86 0/1
chr1 16356501 rs1805152 G A . PASS 0.7496000 0.4467000 0.7669000 0.5577000 0.6268000 0.6486000 35.72 69.84 168 1000.00 5.52 44.64 0 44.64 0/1
chr1 16356522 rs34471231 A G . PASS 0.0809000 0.0447000 0.0060000 0.0755000 0.0481000 0.0533000 36.68 69.77 157 1000.00 3.99 47.13 0 47.13 0/1
chr1 16356531 rs35747151 G A . PASS 0.0809000 0.0447000 0.0060000 0.0755000 0.0481000 0.0533000 36.51 69.75 153 1000.00 4.14 47.71 0 47.71 0/1
chr1 16356533 rs35154011 T C . PASS 0.0809000 0.0447000 0.0060000 0.0755000 0.0481000 0.0533000 37.0 69.76 150 1000.00 4.95 46.67 0 46.67 0/1
chr1 16356702 rs34292424 G A . PASS 0.0802000 0.0447000 0.0060000 0.0765000 0.0481000 0.0533000 37.0 65.5 11 185.04 0.00 54.55 0 54.55 0/1
chr1 16356869 rs12729970 C T . PASS 0.0809000 0.0461000 0.0060000 0.0775000 0.0481000 0.0539000 37.0 70.0 10 188.05 13.33 60.00 0 60.00 0/1
chr1 16356915 rs12729991 C G . PASS 0.0817000 0.0447000 0.0060000 0.0775000 0.0481000 0.0539000 36.0 70.0 22 386.39 12.12 54.55 0 54.55 0/1
chr1 16357147 rs12140223 C T . PASS 0.0802000 0.0447000 0.0060000 0.0775000 0.0481000 0.0535000 35.82 67.49 99 1000.00 2.61 51.52 0 51.52 0/1
chr1 16358134 rs2015515 T C . PASS 0.0809000 0.0447000 0.0060000 0.0775000 0.0481000 0.0537000 35.29 70.0 14 205.77 14.29 50.00 0 50.00 0/1
chr1 16358148 rs2015509 T C . PASS 0.7693000 0.5951000 0.9742000 0.6690000 0.6820000 0.7492000 35.67 70.0 21 268.24 12.70 42.86 0 42.86 0/1
chr1 16358366 rs12141388 C T . PASS 0.0817000 0.0447000 0.0060000 0.0785000 0.0481000 0.0541000 36.14 69.57 56 371.75 17.86 25.00 0 25.00 0/1
chr1 16358932 rs10803407 T C . PASS 0.7693000 0.5951000 0.9742000 0.6690000 0.6810000 0.7490000 36.64 70.0 118 1000.00 3.26 56.78 0 56.78 0/1
chr1 16359050 rs71493532 GCA GAG . PASS . . . . . . 36.71 70.0 130 1000.00 2.28 47.69 0 50.00 0/1
chr1 16359114 . G C . PASS . . . . . . 34.0 70.0 42 147.10 161.90 19.05 0 19.05 0/1
chr1 16359119 . G C . PASS . . . . . . 30.14 70.0 37 96.37 162.16 18.92 0 18.92 0/1
chr1 16359123 rs9442217 A G . PASS 0.7693000 0.5951000 0.9742000 0.6690000 0.6810000 0.7490000 36.33 70.0 27 599.37 7.41 62.96 0 66.67 0/1
chr1 16359176 rs35881888 C T . PASS 0.0794000 0.0447000 0.0060000 0.0775000 0.0481000 0.0533000 37.0 70.0 13 304.33 0.00 69.23 0 69.23 0/1
chr1 16360137 rs12746751 C T . PASS 0.1036000 0.0504000 0.0060000 0.0775000 0.0481000 0.0605000 35.91 64.94 74 1000.00 13.19 44.59 0 44.59 0/1
chr1 16360190 rs28418375 A C . PASS . . . . . . 37.0 64.13 75 1000.00 12.00 50.67 0 50.67 0/1
chr1 16362621 rs2009044 G A . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 37.0 69.92 13 507.53 0.00 100.00 0 100.00 1/1
chr1 16362807 rs4083860 T A . PASS . . . . . . 35.78 64.22 112 1000.00 1.15 52.68 0 52.68 0/1
chr1 16363048 rs1889786 C T . PASS . . . . . . 36.83 68.97 85 944.10 0.08 34.12 0 42.35 0/1
chr1 16363128 rs2863424 T G . PASS 0.0030000 0.0058000 0.0298000 0.0060000 0.0072000 0.0101840 37.0 70.0 98 127.88 73.65 11.22 0 11.22 0/1
chr1 16363132 rs1889787 C T . PASS 0.1286000 0.1974000 0.2183000 0.1889000 0.1022000 0.1631000 36.5 69.54 99 660.03 21.72 24.24 0 24.24 0/1
chr1 16363183 rs78528114 C G . PASS . . . . . . 37.0 67.17 162 937.74 10.12 21.60 0 21.60 0/1
chr1 16363243 rs35030434 A G . PASS . . . . . . 36.64 66.06 129 945.67 0.14 25.58 0 25.58 0/1
chr1 16366084 rs71631762 T A . PASS 0.0424000 0.0187000 0.0020000 0.0308000 0.0102000 0.0224000 37.0 70.0 18 76.29 77.78 22.22 0 22.22 0/1
chr1 16366106 rs11487758 A G . PASS 0.0590000 0.0130000 0.0040000 0.0239000 0.0184000 0.0266000 37.0 70.0 27 53.35 66.67 14.81 0 14.81 0/1
chr1 16366411 rs3085800 CT C . PASS . . . . . . 35.97 69.93 66 981.40 3.64 45.45 1 45.45 0/1
chr1 16366411 . CTGAG CA . PASS . . . . . . . . 69 941.15 4.90 42.03 1 42.03 0/1
chr1 16366412 . TG T . PASS . . . . . . 35.97 69.93 66 981.41 3.64 45.45 1 45.45 0/1
chr1 16366413 . GA G . PASS . . . . . . 35.97 69.93 69 972.38 0.58 43.48 1 43.48 0/1
chr1 16366415 . G A . PASS . . . . . . 36.17 69.93 71 941.15 2.04 40.85 1 40.85 0/1
chr1 16366417 rs61628506 TG T . PASS . . . . . . 35.72 69.93 73 912.56 8.97 39.73 1 39.73 0/1
chr1 16366417 . TGG TA . PASS . . . . . . . . 72 912.56 11.51 38.89 1 38.89 0/1
chr1 16366419 . G A . PASS . . . . . . 35.34 69.93 71 917.13 8.94 40.85 1 40.85 0/1
chr1 16371932 rs6604909 A C . PASS 0.4607000 0.9006000 0.9990000 0.9384000 0.9417000 0.8199000 37.0 70.0 12 177.88 16.67 50.00 0 50.00 0/1
chr1 16372282 rs67016480 GT G . PASS 0.2564000 0.3343000 0.4315000 0.3956000 0.4049000 0.3594000 34.11 67.78 24 235.64 16.67 37.50 0 37.50 0/1
chr1 16374330 rs945403 A G . PASS 0.5363000 0.9121000 0.9990000 0.9384000 0.9417000 0.8415000 36.37 70.0 26 670.90 14.57 73.08 0 73.08 0/1
chr1 16374533 rs2014562 G C . PASS 0.7231000 0.9337000 0.9990000 0.9394000 0.9417000 0.8940000 36.83 70.0 146 1000.00 5.29 48.63 0 48.63 0/1
chr1 16374590 rs2282263 C T . PASS 0.0961000 0.0519000 0.0109000 0.1044000 0.0501000 0.0655000 34.41 70.0 72 1000.00 1.35 48.61 0 51.39 0/1
chr1 16374972 rs6696349 T G . PASS 0.4153000 0.0850000 0.0109000 0.1074000 0.0532000 0.1556000 35.8 65.8 68 1000.00 13.82 58.82 0 58.82 0/1
chr1 16375062 rs71493533 GCA GGC . PASS . . . . . . 36.66 68.3 127 1000.00 0.18 41.73 0 41.73 0/1
chr1 16375132 rs12118326 C T . PASS 0.1657000 0.0605000 0.0109000 0.1064000 0.0532000 0.0861000 35.5 69.38 48 789.52 0.00 50.00 0 50.00 0/1
chr1 16375510 rs11588392 G A . PASS 0.2731000 0.0548000 0.0010000 0.0487000 0.0245000 0.0944000 35.57 70.0 82 1000.00 9.29 51.22 0 51.22 0/1
chr1 16376191 rs7367494 C T . PASS 0.4939000 0.9107000 0.9980000 0.9384000 0.9417000 0.8299000 37.0 67.65 37 691.57 4.86 54.05 0 54.05 0/1
chr1 16376230 rs59006537 A AT . PASS . . . . . . 37.0 68.24 46 857.74 6.26 54.35 0 54.35 0/1
chr1 16376232 rs59924562 A T . PASS 0.4849000 0.8703000 0.8224000 0.8598000 0.8569000 0.7542000 36.04 68.24 44 851.18 5.27 56.82 0 56.82 0/1
chr1 16376238 rs34589727 TC T . PASS 0.4939000 0.9107000 0.9990000 0.9384000 0.9417000 0.8301000 37.0 68.31 46 905.54 4.68 56.52 0 56.52 0/1
chr1 16376278 rs7365182 G A . PASS 0.4856000 0.9107000 0.9990000 0.9384000 0.9417000 0.8279000 35.11 67.89 37 613.79 7.40 51.35 0 51.35 0/1
chr1 16376319 rs7368151 T C . PASS 0.4939000 0.9107000 0.9990000 0.9384000 0.9417000 0.8301000 37.0 69.96 41 846.61 3.05 58.54 0 58.54 0/1
chr1 16376458 rs7368166 T C . PASS 0.4947000 0.9107000 0.9980000 0.9384000 0.9417000 0.8301000 37.0 70.0 20 241.49 5.00 40.00 0 40.00 0/1
chr1 16376953 rs10927895 C T . PASS 0.0477000 0.0447000 0.0099000 0.0944000 0.0511000 0.0497000 36.25 70.0 21 560.64 5.36 76.19 0 76.19 0/1
chr1 16377363 rs185451420 G A . PASS . . . . . . 35.88 63.31 178 732.41 20.86 17.98 0 17.98 0/1
chr1 16377598 rs149762502 T TG . PASS 0.1725000 0.0605000 0.0099000 0.0974000 0.0532000 0.0859000 36.66 70.0 72 1000.00 16.11 48.61 0 48.61 0/1
chr1 16377935 rs6650117 A G . PASS 0.2148000 0.0836000 0.0099000 0.1203000 0.1022000 0.1144000 37.0 70.0 21 238.49 17.86 38.10 0 38.10 0/1
chr1 16377998 . CCA CTG . PASS . . . . . . 36.45 69.52 103 1000.00 1.12 32.04 0 32.04 0/1
chr1 16378093 rs41269167 A G . PASS 0.2141000 0.0677000 0.0099000 0.0984000 0.0532000 0.0980000 37.0 69.31 94 1000.00 10.28 38.30 0 38.30 0/1
chr1 16378098 . GGC GCA . PASS . . . . . . 36.37 69.34 94 1000.00 9.41 40.43 0 40.43 0/1
chr1 16378215 rs5252 C T . PASS 0.2133000 0.0677000 0.0099000 0.0994000 0.0532000 0.0980000 36.47 69.8 216 1000.00 4.34 52.78 0 52.78 0/1
chr1 16378331 rs41269169 G C . PASS 0.2141000 0.0677000 0.0099000 0.0984000 0.0532000 0.0980000 36.41 69.8 90 1000.00 5.47 45.56 0 45.56 0/1
chr1 16378339 rs41269171 C G . PASS 0.2141000 0.0677000 0.0099000 0.0984000 0.0532000 0.0980000 36.03 69.78 80 1000.00 8.04 46.25 0 46.25 0/1
chr1 16378725 rs12140311 A T . PASS 0.2141000 0.0677000 0.0099000 0.0984000 0.0532000 0.0980000 37.0 69.81 95 1000.00 5.29 38.95 0 38.95 0/1
chr1 16378931 rs56334930 A G . PASS 0.2239000 0.0677000 0.0099000 0.0984000 0.0532000 0.1006000 37.0 69.28 73 792.06 2.85 34.25 0 34.25 0/1
chr1 16378936 rs112905730 AG A . PASS 0.2239000 0.0677000 0.0099000 0.0984000 0.0532000 0.1006000 35.54 69.31 68 801.29 8.82 38.24 1 38.24 0/1
chr1 16378936 . AGG AA . PASS . . . . . . . . 70 798.12 8.57 37.14 1 37.14 0/1
chr1 16378938 . G A . PASS 0.2239000 0.0677000 0.0099000 0.0984000 0.0532000 0.1006000 36.52 69.28 67 798.12 11.46 37.31 1 37.31 0/1
chr1 16378945 rs56331467 C T . PASS 0.2239000 0.0677000 0.0099000 0.0984000 0.0532000 0.1006000 36.5 69.25 64 765.38 6.25 37.50 0 37.50 0/1
chr1 16378951 rs56152056 T C . PASS 0.2239000 0.0677000 0.0099000 0.0984000 0.0532000 0.1006000 37.0 69.14 58 670.13 8.21 36.21 0 36.21 0/1
chr1 16378954 rs56112410 G A . PASS 0.1362000 0.0562000 0.0099000 0.0954000 0.0511000 0.0749000 36.33 69.0 53 547.86 5.66 33.96 0 33.96 0/1
chr1 16378980 rs56327038 G C . PASS 0.2254000 0.0735000 0.0099000 0.1054000 0.0542000 0.1034000 37.0 69.67 30 123.71 46.67 20.00 0 20.00 0/1
chr1 16380196 rs5253 T C . PASS 0.6460000 0.9179000 0.8353000 0.9692000 0.9100000 0.8383000 36.62 67.54 127 1000.00 0.00 100.00 0 100.00 1/1
chr1 16380243 rs2275166 A G . PASS 0.8200000 0.5519000 0.8056000 0.6262000 0.6186000 0.7017000 36.72 66.42 86 1000.00 0.00 100.00 0 100.00 1/1
chr1 16380252 rs2275167 C T . PASS 0.5734000 0.5000000 0.8016000 0.6123000 0.5562000 0.6136000 36.03 65.92 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 16380337 rs41269173 G A . PASS 0.0998000 0.0922000 0.0010000 0.1571000 0.0706000 0.0847000 37.0 61.91 11 424.00 0.00 100.00 0 100.00 1/1
chr1 16383448 rs10803415 A C . PASS 0.9032000 0.9265000 0.8244000 0.9632000 0.8947000 0.9010000 36.38 63.23 92 1000.00 15.77 42.39 0 42.39 0/1
chr1 16385131 rs1832151 C A . PASS . . . . . . 36.2 66.78 98 1000.00 6.12 61.22 0 61.22 0/1
chr1 16386247 rs2095543 T C . PASS 0.9531000 0.9323000 0.8234000 0.9662000 0.9018000 0.9167000 36.0 66.14 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 16386447 rs11576236 G C . PASS 0.9531000 0.9337000 0.8185000 0.9662000 0.9018000 0.9159000 36.35 68.78 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 16388580 rs3978467 C A . PASS 0.1906000 0.3833000 0.0198000 0.2843000 0.2945000 0.2220000 36.03 67.81 122 1000.00 9.26 30.33 0 30.33 0/1
chr1 16388646 rs2863456 T C . PASS 0.7163000 0.8588000 0.8304000 0.8738000 0.8497000 0.8167000 36.57 68.96 123 1000.00 1.72 67.48 0 67.48 0/1
chr1 16388709 rs28570004 G T . PASS 0.4100000 0.4078000 0.5575000 0.4911000 0.4611000 0.4657000 36.25 66.72 51 1000.00 9.07 62.75 0 62.75 0/1
chr1 16388756 rs113174531 CACCCAT C . PASS 0.3306000 0.1297000 0.0030000 0.1948000 0.0982000 0.1641000 36.45 68.73 14 294.77 16.88 78.57 0 78.57 0/1
chr1 16388766 rs3978469 C T . PASS 0.5847000 0.8271000 0.7530000 0.8499000 0.8170000 0.7508000 35.67 69.22 13 292.32 17.09 69.23 0 69.23 0/1
chr1 16464673 rs2230597 G A . PASS 0.3396000 0.4294000 0.1458000 0.4215000 0.4417000 0.3494000 36.5 70.0 101 1000.00 7.55 47.52 0 47.52 0/1
chr1 16474839 rs35127370 AC A . PASS 0.4675000 0.4510000 0.0714000 0.4026000 0.3395000 0.3474000 35.58 70.0 58 1000.00 4.12 53.45 0 53.45 0/1
chr1 16475123 rs6678616 C T . PASS 0.1460000 0.3660000 0.0308000 0.3618000 0.2986000 0.2264000 37.0 70.0 93 1000.00 0.55 46.24 0 46.24 0/1
chr1 16475126 rs6678618 C T . PASS 0.1460000 0.3660000 0.0308000 0.3618000 0.2996000 0.2266000 37.0 70.0 94 1000.00 4.06 45.74 0 45.74 0/1
chr1 16528218 rs6676143 G T . PASS 0.3775000 0.3761000 0.7123000 0.4742000 0.4192000 0.4722000 35.84 70.0 52 1000.00 0.50 59.62 0 59.62 0/1
chr1 16528843 rs1693540 A G . PASS 0.6800000 0.8588000 0.8661000 0.8449000 0.8773000 0.8139000 36.62 70.0 57 1000.00 3.29 56.14 0 56.14 0/1
chr1 16533444 . T C . PASS . . . . . . 37.0 68.67 54 1000.00 3.70 55.56 0 55.56 0/1
chr1 16533830 . AA A . PASS . . . . . . 37.0 70.0 10 53.18 33.33 30.00 0 30.00 0/1
chr1 16559541 rs3738631 C G . PASS 0.5923000 0.2075000 0.1726000 0.3042000 0.1391000 0.3081000 37.0 70.0 22 879.32 0.00 100.00 0 100.00 1/1
chr1 16562968 rs6603850 C A . PASS 0.6566000 0.5389000 0.8472000 0.7018000 0.5164000 0.6603000 37.0 68.18 11 419.85 0.00 100.00 0 100.00 1/1
chr1 16567622 rs6672616 T C . PASS 0.0998000 0.1037000 0.1696000 0.2058000 0.1125000 0.1382000 36.59 69.28 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 16577908 rs12069239 G C . PASS 0.4312000 0.2133000 0.1746000 0.3340000 0.1288000 0.2708000 37.0 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 16583030 rs3830890 C CA . PASS 0.0915000 0.1888000 0.1746000 0.3340000 0.1288000 0.1777000 36.38 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 16621183 rs1007150 C T . PASS 0.4788000 0.5548000 0.8522000 0.7584000 0.5225000 0.6292000 36.17 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 16621234 rs12353958 G A . PASS 0.0023000 0.0173000 0.0010000 0.0855000 0.0123000 0.0228000 36.08 70.0 63 839.91 7.94 41.27 0 41.27 0/1
chr1 16693725 rs142845497 T TG . PASS 0.0862000 0.1340000 0.1726000 0.2247000 0.0849000 0.1378000 37.0 70.0 19 659.27 9.94 94.74 0 94.74 1/1
chr1 16725330 rs41307763 G A . PASS 0.0045000 0.0245000 0.1399000 0.0994000 0.0389000 0.0603000 34.75 70.0 27 518.56 6.48 59.26 0 59.26 0/1
chr1 16731646 rs3106498 T C . PASS 0.8608000 0.9841000 1.0000000 1.0000000 1.0000000 0.9611000 36.68 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 16736132 rs4661746 T C . PASS 0.0159000 0.1686000 0.1726000 0.3161000 0.1380000 0.1528000 36.49 70.0 94 1000.00 0.00 100.00 0 100.00 1/1
chr1 16736546 rs10907226 C T . PASS 0.5953000 0.5346000 0.9097000 0.6421000 0.3957000 0.6206000 35.8 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 16778265 rs279782 G T . PASS 0.2511000 0.5346000 0.2976000 0.5596000 0.6646000 0.4425000 37.0 70.0 41 884.23 1.95 60.98 0 60.98 0/1
chr1 16785564 rs11543230 C T . PASS 0.0015000 0.0202000 0.0010000 0.0765000 0.0204000 0.0228000 37.0 70.0 27 303.96 6.67 37.04 0 37.04 0/1
chr1 16802890 rs696095 G A . PASS 0.1354000 0.5245000 0.2966000 0.5517000 0.6605000 0.4079000 36.47 67.82 90 1000.00 4.44 50.00 0 50.00 0/1
chr1 16804745 rs696096 T C . PASS 0.2617000 0.5274000 0.3006000 0.5398000 0.6493000 0.4379000 37.0 69.19 54 1000.00 6.02 59.26 0 59.26 0/1
chr1 16804753 rs696097 T C . PASS 0.2617000 0.5274000 0.3006000 0.5408000 0.6493000 0.4381000 36.62 69.12 54 1000.00 4.86 59.26 0 59.26 0/1
chr1 16812082 rs2418644 A G . PASS 0.1339000 0.3876000 0.0188000 0.3012000 0.3630000 0.2242000 37.0 68.12 46 831.56 0.36 52.17 0 52.17 0/1
chr1 16813066 rs2165678 C T . PASS 0.1664000 0.3948000 0.0268000 0.3052000 0.3671000 0.2370000 36.4 69.6 79 1000.00 3.73 50.63 0 50.63 0/1
chr1 16877444 rs79270280 T A . PASS . . . . . . 37.0 58.46 113 166.28 5.04 11.50 0 11.50 0/1
chr1 16877479 . G A . PASS . . . . . . 37.0 59.31 134 232.53 22.95 11.94 0 11.94 0/1
chr1 16890283 rs156893 G T . PASS 0.9818000 0.9769000 1.0000000 0.9712000 0.9918000 0.9846000 35.55 68.82 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 16890320 rs3900707 T C . PASS . . . . . . 37.0 68.0 55 94.38 0.00 12.73 0 12.73 0/1
chr1 16890421 rs2990549 G A . PASS . . . . . . 36.21 69.25 289 1000.00 3.31 52.60 0 52.60 0/1
chr1 16890428 rs3900708 T A . PASS . . . . . . 36.64 69.8 320 1000.00 3.81 20.62 0 20.62 0/1
chr1 16890441 rs3863779 C T . PASS . . . . . . 36.66 68.66 368 1000.00 7.44 19.29 0 19.29 0/1
chr1 16890484 rs12117084 G C . PASS . . . . . . 36.77 69.13 522 1000.00 1.63 19.73 0 19.73 0/1
chr1 16890598 rs2990550 T A . PASS . . . . . . 36.13 68.56 174 1000.00 15.56 55.75 0 55.75 0/1
chr1 16890602 rs2990551 T G . PASS . . . . . . 37.0 68.82 169 1000.00 7.24 39.64 0 39.64 0/1
chr1 16890607 rs200783506 G A . PASS . . . . . . 37.0 69.1 146 781.21 17.35 20.55 0 20.55 0/1
chr1 16890639 rs1043750 C T . PASS . . . . . . 37.0 64.8 66 1000.00 8.48 45.45 0 45.45 0/1
chr1 16890644 rs2992339 C T . PASS . . . . . . 37.0 68.32 62 1000.00 6.45 50.00 0 50.00 0/1
chr1 16890670 . ATG ACA . PASS . . . . . . 36.71 69.05 22 787.94 0.00 95.45 0 95.45 1/1
chr1 16891149 . T C . PASS . . . . . . 37.0 64.25 19 77.42 31.58 21.05 0 21.05 0/1
chr1 16891154 . A G . PASS . . . . . . 37.0 50.2 22 110.16 12.73 22.73 0 22.73 0/1
chr1 16891158 rs4112523 A C . PASS . . . . . . 37.0 57.29 23 478.93 2.48 60.87 0 60.87 0/1
chr1 16891243 rs61771012 C G . PASS . . . . . . 36.86 61.76 84 1000.00 0.00 100.00 0 100.00 1/1
chr1 16891333 . C T . PASS . . . . . . 35.42 66.08 248 748.38 10.87 15.32 0 15.32 0/1
chr1 16891485 rs2289551 C T . PASS . . . . . . 37.0 59.07 16 504.15 12.50 87.50 0 87.50 0/1
chr1 16894181 rs3983164 A G . PASS . . . . . . 37.0 69.0 11 59.73 48.48 27.27 0 27.27 0/1
chr1 16894301 rs4098002 G T . PASS . . . . . . 37.0 62.24 63 483.85 0.00 26.98 0 26.98 0/1
chr1 16894323 rs55870077 C A . PASS . . . . . . 37.0 52.45 106 1000.00 0.00 41.51 0 41.51 0/1
chr1 16894376 rs849613 A G . PASS . . . . . . 35.55 47.39 272 440.48 0.37 11.76 0 12.13 0/1
chr1 16894664 rs860282 C T . PASS . . . . . . 36.43 53.81 28 748.42 2.38 75.00 0 75.00 0/1
chr1 16895634 rs75027498 T G . PASS . . . . . . 36.65 52.66 213 1000.00 8.94 63.85 0 63.85 0/1
chr1 16899669 rs373211172 C T . PASS . . . . . . 37.0 59.8 16 128.22 20.00 31.25 0 31.25 0/1
chr1 16900883 rs688635 T G . PASS . . . . . . 35.0 34.33 24 129.76 25.00 25.00 0 25.00 0/1
chr1 16901247 rs10752419 G T . PASS . . . . . . 37.0 56.57 40 427.77 25.00 35.00 0 35.00 0/1
chr1 16901259 rs10907243 T A . PASS . . . . . . 37.0 56.11 30 249.02 20.00 30.00 0 30.00 0/1
chr1 16901539 . G T . PASS . . . . . . 35.4 52.6 31 472.61 34.41 48.39 0 48.39 0/1
chr1 16901549 rs10907244 A G . PASS . . . . . . 37.0 53.82 38 563.24 33.75 44.74 0 44.74 0/1
chr1 16901714 rs138796798 G A . PASS . . . . . . 36.8 63.79 106 1000.00 6.12 57.55 0 57.55 0/1
chr1 16902661 rs2985115 C A . PASS 0.6626000 0.6427000 0.8115000 0.6133000 0.5879000 0.6653000 37.0 49.6 16 332.92 0.00 62.50 0 62.50 0/1
chr1 16902727 . G C . PASS . . . . . . 35.94 51.0 95 1000.00 8.98 35.79 0 35.79 0/1
chr1 16902750 rs375334074 T C . PASS . . . . . . 37.0 50.7 192 225.05 16.04 10.42 0 10.42 0/1
chr1 16902804 rs77427788 C A . PASS . . . . . . 37.0 50.02 371 601.08 7.91 11.32 0 11.32 0/1
chr1 16902823 rs80271292 G C . PASS . . . . . . 36.53 44.12 390 895.81 3.53 13.08 0 13.08 0/1
chr1 16902884 rs74630591 T C . PASS . . . . . . 36.73 46.48 264 998.82 7.58 16.67 0 16.67 0/1
chr1 16902894 rs61772339 A G . PASS 0.7300000 0.6455000 0.7996000 0.6183000 0.5849000 0.6815000 36.36 52.56 229 1000.00 4.92 65.07 0 65.07 0/1
chr1 16903663 rs684193 C T . PASS . . . . . . 33.0 67.5 12 158.01 16.67 50.00 0 50.00 0/1
chr1 16903674 rs613213 C T . PASS . . . . . . 37.0 66.8 18 331.06 11.11 55.56 0 55.56 0/1
chr1 16903683 rs684166 T A . PASS . . . . . . 37.0 63.75 20 404.42 3.33 60.00 0 60.00 0/1
chr1 16903730 . T C . PASS . . . . . . 37.0 65.21 79 523.39 7.06 24.05 0 24.05 0/1
chr1 16903912 rs61772344 T A . PASS . . . . . . 36.17 56.9 77 918.94 58.04 37.66 0 37.66 0/1
chr1 16905518 . T C . PASS . . . . . . 37.0 53.4 17 125.22 0.00 29.41 0 29.41 0/1
chr1 16905641 . C G . PASS . . . . . . 37.0 55.62 21 234.33 23.81 38.10 0 38.10 0/1
chr1 16905718 rs3738661 A C . PASS . . . . . . 37.0 60.91 18 368.68 22.22 61.11 0 61.11 0/1
chr1 16905787 . GAT G . PASS . . . . . . 37.0 69.0 14 98.49 42.86 7.14 1 35.71 0/1
chr1 16905787 . GAT GGC . PASS . . . . . . 37.0 67.25 14 98.49 42.86 28.57 1 35.71 0/1
chr1 16905788 rs145220846 A G . PASS . . . . . . 37.0 67.25 12 98.49 50.00 33.33 1 33.33 0/1
chr1 16905789 rs141419018 T C . PASS . . . . . . 37.0 67.25 12 98.49 50.00 33.33 1 33.33 0/1
chr1 16905800 rs199652869 G A . PASS . . . . . . 33.0 68.67 10 50.73 60.00 30.00 0 30.00 0/1
chr1 16905842 rs200194071 A G . PASS . . . . . . 33.0 55.33 13 155.00 25.64 46.15 0 46.15 0/1
chr1 16907107 . A C . PASS . . . . . . 35.29 68.86 34 141.43 17.65 20.59 0 20.59 0/1
chr1 16907110 rs77700260 T C . PASS . . . . . . 36.0 68.96 36 837.65 5.56 66.67 0 66.67 0/1
chr1 16907124 rs615115 A C . PASS . . . . . . 36.38 68.77 55 1000.00 1.68 70.91 0 70.91 0/1
chr1 16907328 rs78540200 G T . PASS . . . . . . 36.08 65.28 579 1000.00 0.44 72.19 0 72.19 0/1
chr1 16907466 rs371465077 G A . PASS . . . . . . 36.85 50.75 215 1000.00 5.12 37.21 0 37.21 0/1
chr1 16907547 rs142893461 C G . PASS . . . . . . 37.0 47.0 35 442.82 8.57 40.00 0 40.00 0/1
chr1 16907766 rs115167116 A G . PASS . . . . . . 37.0 61.73 11 424.00 0.00 100.00 0 100.00 1/1
chr1 16907854 rs9729861 T A . PASS . . . . . . 36.64 65.95 169 1000.00 14.17 59.76 0 59.76 0/1
chr1 16907863 rs375442303 G C . PASS . . . . . . 36.29 66.76 185 104.66 19.01 9.19 0 9.19 0/1
chr1 16907871 rs9728933 C T . PASS . . . . . . 36.9 65.87 217 1000.00 10.14 57.14 0 57.14 0/1
chr1 16908115 rs647061 A G . PASS . . . . . . 36.14 69.5 35 434.96 2.86 40.00 0 40.00 0/1
chr1 16908181 . C T . PASS . . . . . . 37.0 69.14 17 208.75 16.81 41.18 0 41.18 0/1
chr1 16909052 rs140548913 C T . PASS 0.8729000 0.8141000 0.8393000 0.7763000 0.8047000 0.8253000 35.91 65.18 11 411.98 0.00 100.00 0 100.00 1/1
chr1 16909057 rs202075504 A C . PASS . . . . . . 37.0 59.0 12 52.57 16.67 25.00 0 25.00 0/1
chr1 16909061 rs200499873 T G . PASS . . . . . . 37.0 59.0 11 55.58 6.06 27.27 0 27.27 0/1
chr1 16910064 rs2023254 A G . PASS 0.4773000 0.4986000 0.5823000 0.4433000 0.4519000 0.4896000 36.57 66.96 91 851.19 28.02 30.77 0 30.77 0/1
chr1 16912013 . CAG CCA . PASS . . . . . . 37.0 69.5 12 56.72 33.33 16.67 1 33.33 0/1
chr1 16912013 . CAG CCG . PASS . . . . . . 37.0 69.5 12 56.72 33.33 16.67 1 33.33 0/1
chr1 16912015 rs58689366 G A . PASS 0.0197000 0.1758000 0.1577000 0.1362000 0.2239000 0.1324000 37.0 69.33 12 56.72 50.00 25.00 1 25.00 0/1
chr1 16912299 rs61773587 A G . PASS . . . . . . 37.0 69.22 29 256.18 0.00 31.03 0 31.03 0/1
chr1 16912330 rs4336845 C T . PASS . . . . . . 35.15 69.23 15 441.38 0.00 86.67 0 86.67 0/1
chr1 16913451 rs201873677 AAAGAAT A . PASS 0.0091000 0.0029000 0.0000000 0.0000000 0.0020000 0.0031949 37.0 49.33 20 67.86 30.00 30.00 0 30.00 0/1
chr1 16913469 . T C . PASS 0.0083000 0.0014000 0.0030000 0.0000000 0.0000000 0.0029952 37.0 49.33 26 139.89 38.46 23.08 0 23.08 0/1
chr1 16914117 . C T . PASS . . . . . . 37.0 66.9 122 477.50 6.17 17.21 0 17.21 0/1
chr1 16914160 rs2023215 G A . PASS . . . . . . 36.43 66.33 234 1000.00 8.79 53.85 0 53.85 0/1
chr1 16914168 rs2147033 C G . PASS . . . . . . 36.4 66.08 233 1000.00 2.40 60.09 0 60.09 0/1
chr1 16914196 rs61773595 T C . PASS . . . . . . 36.62 68.33 340 1000.00 0.96 18.82 0 18.82 0/1
chr1 16914252 rs1020241 C T . PASS . . . . . . 36.26 63.46 397 1000.00 5.11 44.58 0 45.09 0/1
chr1 16914306 rs1967910 A G . PASS . . . . . . 36.57 64.04 216 1000.00 5.22 51.85 0 51.85 0/1
chr1 16914339 . G C . PASS . . . . . . 37.0 69.1 131 446.27 17.23 16.03 0 16.03 0/1
chr1 16914393 . G T . PASS . . . . . . 35.4 59.33 53 406.40 9.56 28.30 0 28.30 0/1
chr1 16914396 rs2023276 C T . PASS . . . . . . 37.0 62.88 50 1000.00 2.25 64.00 0 64.00 0/1
chr1 16914415 rs4233549 A G . PASS . . . . . . 36.4 62.3 34 688.59 4.12 58.82 0 58.82 0/1
chr1 16915513 rs368775000 C G . PASS . . . . . . 37.0 66.33 12 52.57 100.00 25.00 0 25.00 0/1
chr1 16915609 rs201503702 C T . PASS . . . . . . 37.0 33.75 13 95.48 7.69 30.77 0 30.77 0/1
chr1 16915611 rs199620792 T C . PASS 0.0408000 0.2118000 0.3641000 0.1471000 0.1186000 0.1661000 34.6 55.6 12 128.26 3.33 41.67 0 41.67 0/1
chr1 16916358 rs3981774 G C . PASS 0.5522000 0.2954000 0.3542000 0.2734000 0.3108000 0.3736000 37.0 60.21 93 1000.00 28.29 41.94 0 41.94 0/1
chr1 16916363 . T C . PASS . . . . . . 37.0 57.92 108 143.71 46.30 11.11 0 11.11 0/1
chr1 16916368 rs200854427 T C . PASS 0.0083000 0.0000000 0.0010000 0.0000000 0.0000000 0.0023962 36.59 61.76 112 829.76 43.78 25.89 0 25.89 0/1
chr1 16916466 rs112602821 A G . PASS 0.1415000 0.2450000 0.2738000 0.1650000 0.1718000 0.1931000 37.0 58.25 168 130.22 36.90 9.52 0 9.52 0/1
chr1 16916515 rs61773622 G A . PASS . . . . . . 37.0 57.23 66 311.89 2.33 19.70 0 19.70 0/1
chr1 16916569 rs1855754 A G . PASS . . . . . . 37.0 51.0 26 56.36 0.00 15.38 0 15.38 0/1
chr1 16916603 rs11583443 C A . PASS 0.9198000 0.7089000 0.8651000 0.6233000 0.6759000 0.7724000 35.5 63.75 10 255.43 0.00 80.00 0 80.00 0/1
chr1 16918424 rs9730077 G C . PASS . . . . . . 36.73 59.69 432 530.77 10.09 10.42 0 10.42 0/1
chr1 16918454 rs9730079 G A . PASS . . . . . . 36.68 55.87 385 384.00 6.25 9.87 0 9.87 0/1
chr1 16918457 rs9730080 G C . PASS . . . . . . 37.0 56.11 380 406.91 4.74 10.00 0 10.00 0/1
chr1 16918465 rs3897296 A G . PASS . . . . . . 36.4 56.72 370 1000.00 29.37 16.22 0 16.22 0/1
chr1 16918502 rs3925698 A G . PASS 0.2579000 0.5360000 0.6101000 0.6024000 0.5470000 0.4930000 36.63 64.52 284 1000.00 0.57 68.31 0 68.31 0/1
chr1 16918611 rs4141869 A C . PASS . . . . . . 36.64 56.24 61 1000.00 3.97 54.10 0 54.10 0/1
chr1 16931073 rs4661853 G A . PASS 0.2005000 0.3127000 0.4286000 0.3161000 0.3630000 0.3169000 37.0 70.0 12 98.49 0.00 33.33 0 33.33 0/1
chr1 16931355 rs381429 T A . PASS 0.3949000 0.4352000 0.3968000 0.4046000 0.3885000 0.4016000 36.57 69.25 125 744.70 3.77 22.40 0 22.40 0/1
chr1 16934905 rs849710 A G . PASS 0.9796000 0.8775000 0.9464000 0.8052000 0.8538000 0.8992000 37.0 69.68 22 694.95 1.44 86.36 0 86.36 0/1
chr1 16945367 rs71270819 AGAG A . PASS . . . . . . 34.62 70.0 45 375.30 16.11 35.56 0 35.56 0/1
chr1 16945409 rs13566 T A . PASS 0.2254000 0.3473000 0.2113000 0.3767000 0.4110000 0.3061000 35.86 70.0 91 542.65 0.73 23.08 0 23.08 0/1
chr1 16945452 rs11260834 C T . PASS . . . . . . 36.45 69.68 190 302.59 3.06 11.58 0 11.58 0/1
chr1 16945504 rs11378 C T . PASS . . . . . . 36.84 67.82 366 1000.00 10.60 21.04 0 21.04 0/1
chr1 16945673 rs55654854 A G . PASS . . . . . . 37.0 52.72 90 448.49 0.00 20.00 0 20.00 0/1
chr1 16945738 rs150540867 A G . PASS . . . . . . 37.0 48.0 17 375.84 0.00 64.71 0 64.71 0/1
chr1 16946535 rs437905 T C . PASS . . . . . . 36.29 68.96 110 1000.00 6.56 46.36 0 46.36 0/1
chr1 16946562 rs1762938 C A . PASS . . . . . . 37.0 69.25 56 296.06 1.19 21.43 0 21.43 0/1
chr1 16948472 . TCC TCG . PASS . . . . . . 36.37 68.94 356 1000.00 0.71 21.91 0 91.01 0/1
chr1 16948472 . TCC TTG . PASS . . . . . . 36.37 68.94 356 1000.00 0.21 69.10 0 91.01 0/1
chr1 16950251 rs55674375 AG A . PASS . . . . . . 37.0 69.0 21 187.15 19.05 33.33 0 33.33 0/1
chr1 16950346 rs9663015 A C . PASS 0.1210000 0.1888000 0.0843000 0.1372000 0.2873000 0.1587000 36.71 67.86 198 1000.00 3.68 42.42 0 42.42 0/1
chr1 16950708 rs1628058 T G . PASS . . . . . . 36.71 69.95 76 1000.00 0.71 53.95 0 53.95 0/1
chr1 16950783 rs2246249 T A . PASS 0.1225000 0.2378000 0.0129000 0.1918000 0.2423000 0.1538000 36.59 69.95 227 1000.00 9.80 25.99 0 25.99 0/1
chr1 16950880 rs1629127 T C . PASS . . . . . . 36.89 70.0 212 1000.00 1.06 53.77 0 53.77 0/1
chr1 16951024 rs1624137 T C . PASS . . . . . . 37.0 69.52 49 1000.00 2.60 67.35 0 67.35 0/1
chr1 16952260 rs1762943 T C . PASS . . . . . . 37.0 70.0 12 223.80 14.29 58.33 0 58.33 0/1
chr1 16952703 rs1762944 C T . PASS . . . . . . 37.0 70.0 17 125.21 28.24 29.41 0 29.41 0/1
chr1 16952896 rs1762945 G A . PASS . . . . . . 37.0 69.23 278 425.67 3.20 11.15 0 11.15 0/1
chr1 16952952 rs1762946 G A . PASS . . . . . . 36.04 69.16 234 283.44 0.03 10.68 0 10.68 0/1
chr1 16952993 rs942268 C G . PASS 0.8699000 0.8429000 0.9643000 0.8270000 0.7566000 0.8544000 36.6 67.75 184 1000.00 3.16 65.76 0 65.76 0/1
chr1 16953672 rs3738597 C T . PASS . . . . . . 36.64 65.95 541 1000.00 1.22 12.20 0 12.20 0/1
chr1 16955128 rs1762949 A G . PASS . . . . . . 36.76 68.71 153 1000.00 7.84 33.33 0 33.33 0/1
chr1 16955217 rs4661868 C T . PASS . . . . . . 37.0 69.12 20 241.49 5.00 40.00 0 40.00 0/1
chr1 16957446 rs698883 T G . PASS 0.9743000 0.8761000 0.9514000 0.7932000 0.8507000 0.8956000 37.0 69.96 52 1000.00 0.32 92.31 0 92.31 0/1
chr1 16958062 . CCA CCG . PASS . . . . . . 36.26 69.21 241 1000.00 1.63 22.41 0 46.89 0/1
chr1 16958062 . CCA CTG . PASS . . . . . . 36.26 69.21 241 1000.00 6.40 24.48 0 46.89 0/1
chr1 16958141 rs11589875 G A . PASS . . . . . . 37.0 68.23 138 95.18 15.27 9.42 0 9.42 0/1
chr1 16958155 rs9658906 C T . PASS . . . . . . 37.0 68.23 116 161.40 14.32 11.21 0 11.21 0/1
chr1 16959551 rs849696 T C . PASS . . . . . . 35.67 70.0 41 571.97 6.78 43.90 0 43.90 0/1
chr1 16959602 rs1807293 C T . PASS . . . . . . 36.4 70.0 132 1000.00 6.36 45.45 0 45.45 0/1
chr1 16959612 rs9329443 A G . PASS . . . . . . 35.83 69.93 144 1000.00 5.93 28.47 0 28.47 0/1
chr1 16959732 rs112000683 T TGGGCCTGCAGCA . PASS 0.4644000 0.3818000 0.3363000 0.3439000 0.3814000 0.3868000 36.33 63.72 74 502.84 5.83 25.68 0 25.68 0/1
chr1 16959814 rs1759187 C T . PASS 0.3638000 0.3646000 0.0972000 0.3221000 0.3088000 0.2911000 37.0 70.0 14 50.70 28.57 21.43 0 21.43 0/1
chr1 16969246 rs11260857 G A . PASS . . . . . . 36.21 68.89 168 1000.00 3.43 36.31 0 36.31 0/1
chr1 16969381 rs9727604 C T . PASS . . . . . . 35.73 68.06 102 1000.00 3.39 64.71 0 64.71 0/1
chr1 16972134 rs4661404 C T . PASS . . . . . . 35.91 55.82 217 656.77 11.40 15.21 0 15.21 0/1
chr1 16972920 rs4661882 C T . PASS . . . . . . 36.84 69.52 444 1000.00 4.95 34.68 0 34.68 0/1
chr1 16973388 rs76880030 C T . PASS . . . . . . 37.0 52.29 236 259.69 22.32 10.17 0 10.17 0/1
chr1 16973519 rs2501762 G A . PASS . . . . . . 36.68 59.86 516 1000.00 6.79 14.73 0 14.73 0/1
chr1 16973606 rs76859932 G T . PASS . . . . . . 35.37 64.36 644 393.39 0.48 9.16 0 9.16 0/1
chr1 16973919 rs141898836 A G . PASS . . . . . . 36.55 52.85 337 1000.00 1.34 23.74 0 23.74 0/1
chr1 16973996 rs200256873 A G . PASS . . . . . . 36.55 51.53 475 727.70 38.57 11.16 0 11.16 0/1
chr1 16974010 rs201140718 G C . PASS . . . . . . 36.48 51.43 517 304.71 44.45 8.90 0 8.90 0/1
chr1 16974256 . G C . PASS 0.5159000 0.5115000 0.6736000 0.5000000 0.4980000 0.5403000 36.86 47.64 322 1000.00 38.87 27.02 0 27.02 0/1
chr1 16974511 rs58679574 G A . PASS . . . . . . 36.19 68.36 508 854.89 9.24 11.61 0 11.61 0/1
chr1 16974592 rs201212576 C T . PASS . . . . . . 36.71 66.44 601 1000.00 10.26 13.64 0 13.64 0/1
chr1 16974637 rs16854791 T C . PASS . . . . . . 36.8 64.6 832 1000.00 6.43 21.39 0 21.39 0/1
chr1 16974662 rs28460410 C A . PASS . . . . . . 36.36 64.33 757 1000.00 6.78 17.44 0 17.44 0/1
chr1 16974869 rs4570422 G C . PASS . . . . . . 36.91 68.69 474 1000.00 5.16 27.43 0 27.43 0/1
chr1 16975045 rs55763726 G A . PASS . . . . . . 36.86 57.81 635 1000.00 36.48 13.86 0 13.86 0/1
chr1 16975202 rs28602904 T C . PASS . . . . . . 35.98 61.14 737 1000.00 6.85 32.02 0 32.02 0/1
chr1 16975230 rs2761535 G C . PASS . . . . . . 36.58 60.42 631 1000.00 1.74 89.22 0 89.54 0/1
chr1 16975495 rs199672680 T C . PASS 0.4584000 0.6268000 0.7004000 0.5159000 0.5552000 0.5609000 36.59 46.2 115 1000.00 15.42 51.30 0 51.30 0/1
chr1 16975689 rs201913540 G C . PASS . . . . . . 37.0 48.71 283 531.78 24.34 12.01 0 12.01 0/1
chr1 16975831 rs61772254 C T . PASS . . . . . . 36.25 40.52 367 831.83 0.08 13.08 0 13.08 0/1
chr1 16976032 rs2483047 A C . PASS . . . . . . 36.68 68.27 429 1000.00 2.53 25.87 0 25.87 0/1
chr1 16976193 rs61772256 C T . PASS . . . . . . 37.0 53.11 571 1000.00 14.43 14.36 0 14.36 0/1
chr1 16976436 . G C . PASS . . . . . . 37.0 58.07 314 187.85 46.18 8.92 0 8.92 0/1
chr1 16976451 rs201492135 G A . PASS . . . . . . 36.44 58.05 338 722.31 35.82 12.72 0 12.72 0/1
chr1 16976539 rs199931165 A G . PASS . . . . . . 36.67 48.55 550 1000.00 34.13 19.82 0 19.82 0/1
chr1 16976569 rs78288272 G A . PASS . . . . . . 36.5 52.72 803 522.06 15.99 8.97 0 8.97 0/1
chr1 16976585 rs1135350 C T . PASS . . . . . . 36.44 53.97 910 1000.00 10.92 25.71 0 25.71 0/1
chr1 16976620 rs55885953 A G . PASS . . . . . . 36.66 63.26 1056 1000.00 2.35 40.15 0 40.15 0/1
chr1 16976641 rs1057417 C T . PASS . . . . . . 36.19 58.03 1101 1000.00 1.22 14.62 0 14.71 0/1
chr1 16976649 rs1057333 C T . PASS . . . . . . 36.68 58.83 1147 1000.00 3.46 16.22 0 16.22 0/1
chr1 16976679 rs1065528 G A . PASS . . . . . . 36.14 61.7 933 1000.00 0.91 83.39 0 83.39 0/1
chr1 16976681 rs3175284 G T . PASS . . . . . . 35.86 59.3 957 1000.00 6.54 15.46 0 15.46 0/1
chr1 16976825 rs2761525 C A . PASS . . . . . . 35.91 51.55 95 124.92 12.44 11.58 0 11.58 0/1
chr1 16983098 rs200475354 G C . PASS . . . . . . 37.0 51.11 21 276.10 12.70 42.86 0 42.86 0/1
chr1 16983551 . C T . PASS . . . . . . 37.0 50.0 27 136.88 3.70 22.22 0 22.22 0/1
chr1 16983663 . A G . PASS . . . . . . 37.0 51.33 13 179.02 7.69 46.15 0 46.15 0/1
chr1 16983706 rs199579458 G C . PASS . . . . . . 37.0 50.15 42 1000.00 0.24 95.24 0 95.24 1/1
chr1 16983796 . G A . PASS . . . . . . 37.0 52.0 19 77.42 15.79 21.05 0 21.05 0/1
chr1 16999610 . C G . PASS . . . . . . 35.5 44.0 35 180.18 2.86 22.86 0 22.86 0/1
chr1 16999661 . C A . PASS . . . . . . 37.0 49.14 29 168.49 10.84 24.14 0 24.14 0/1
chr1 16999764 . A G . PASS . . . . . . 35.5 50.0 52 133.18 0.00 15.38 0 15.38 0/1
chr1 16999791 . C A . PASS . . . . . . 35.67 58.67 49 179.81 13.15 18.37 0 18.37 0/1
chr1 16999802 . C T . PASS . . . . . . 37.0 60.5 48 157.22 0.00 16.67 0 16.67 0/1
chr1 16999834 . G A . PASS . . . . . . 37.0 65.25 33 202.36 3.03 24.24 0 24.24 0/1
chr1 17007531 rs150982605 C T . PASS . . . . . . 35.98 56.9 93 1000.00 2.77 63.44 0 63.44 0/1
chr1 17007661 rs201569183 G C . PASS . . . . . . 37.0 47.22 25 264.06 67.56 36.00 0 36.00 0/1
chr1 17007763 rs5772705,rs370766355 TG T . PASS . . . . . . 36.57 38.79 24 464.51 9.52 58.33 0 58.33 0/1
chr1 17007855 rs1236822 C T . PASS 1.0000000 0.9798000 1.0000000 0.9404000 0.9959000 0.9844000 37.0 55.3 10 382.23 0.00 100.00 0 100.00 1/1
chr1 17008302 rs2786824 G T . PASS . . . . . . 37.0 68.12 67 805.97 8.48 37.31 0 37.31 0/1
chr1 17012241 rs2761492 G T . PASS 0.7579000 0.8934000 0.9950000 0.8549000 0.9162000 0.8748000 35.94 69.94 102 1000.00 0.00 100.00 0 100.00 1/1
chr1 17013750 rs1765547 G A . PASS . . . . . . 37.0 70.0 17 125.21 11.76 29.41 0 29.41 0/1
chr1 17013810 rs58938355 AG A . PASS . . . . . . 36.24 69.82 47 513.58 11.26 36.17 1 36.17 0/1
chr1 17013810 . AGT AC . PASS . . . . . . . . 51 494.39 19.12 31.37 1 31.37 0/1
chr1 17013812 rs55887839 T C . PASS 0.0008000 0.0231000 0.0000000 0.0159000 0.0123000 0.0089856 37.0 69.81 47 494.39 18.62 34.04 1 34.04 0/1
chr1 17013839 rs1765548 G C . PASS . . . . . . 36.37 70.0 69 537.32 0.92 27.54 0 27.54 0/1
chr1 17013916 rs59725107 GT G . PASS . . . . . . 35.12 68.98 96 1000.00 3.75 62.50 0 62.50 0/1
chr1 17013945 rs545745 A G . PASS . . . . . . 36.57 69.79 84 872.25 0.00 33.33 0 33.33 0/1
chr1 17013974 rs545014 C T . PASS . . . . . . 37.0 69.75 62 783.40 4.57 38.71 0 38.71 0/1
chr1 17017675 rs2743471 C A . PASS . . . . . . 36.33 69.66 90 1000.00 0.00 100.00 0 100.00 1/1
chr1 17022952 rs557690 C A . PASS 0.9909000 0.9510000 0.9950000 0.9165000 0.9479000 0.9629000 35.83 69.69 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 17023110 rs11260887 G A . PASS 0.1233000 0.3703000 0.4792000 0.3429000 0.3824000 0.3239000 36.66 68.51 226 1000.00 5.71 46.90 0 46.90 0/1
chr1 17023126 rs2610633 C G . PASS 0.1475000 0.2853000 0.0268000 0.2097000 0.2924000 0.1831000 36.91 69.19 271 1000.00 4.19 51.29 0 51.29 0/1
chr1 17023143 rs559507 C T . PASS . . . . . . 36.23 68.52 281 1000.00 4.59 50.18 0 50.18 0/1
chr1 17023182 rs614461 C G . PASS 0.4728000 0.4553000 0.5357000 0.4672000 0.4775000 0.4828000 36.67 68.4 279 1000.00 3.10 52.33 0 52.33 0/1
chr1 17023376 rs613579 C T . PASS 0.2474000 0.4150000 0.4970000 0.4264000 0.4427000 0.3950000 36.82 69.22 127 1000.00 1.20 53.54 0 53.54 0/1
chr1 17023403 rs10907267 G A . PASS 0.1225000 0.3573000 0.4563000 0.3320000 0.3793000 0.3145000 36.27 69.23 145 1000.00 5.94 45.52 0 45.52 0/1
chr1 17023483 rs563062 C T . PASS . . . . . . 36.0 69.25 51 792.49 4.41 47.06 0 47.06 0/1
chr1 17023509 rs563142 T C . PASS 0.1679000 0.3689000 0.4782000 0.3638000 0.3855000 0.3401000 37.0 69.16 40 640.78 23.68 47.50 0 47.50 0/1
chr1 17023511 rs563144 C A . PASS 0.5787000 0.7911000 0.8284000 0.7346000 0.7464000 0.7224000 36.67 69.5 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 17025786 rs679703 C G . PASS . . . . . . 34.23 69.0 13 467.35 0.00 100.00 0 100.00 1/1
chr1 17025828 rs2610624 G C . PASS 0.1989000 0.4452000 0.4355000 0.4026000 0.4468000 0.3700000 37.0 67.29 25 472.92 6.29 56.00 0 56.00 0/1
chr1 17025852 rs537296 T C . PASS . . . . . . 36.37 68.61 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 17025992 rs12026928 G A . PASS . . . . . . 36.12 69.61 225 1000.00 0.65 36.44 0 36.44 0/1
chr1 17026043 rs60794777 G GGCA . PASS . . . . . . 36.5 69.62 137 1000.00 7.14 39.42 0 39.42 0/1
chr1 17026087 rs678369 G A . PASS . . . . . . 34.71 69.05 56 628.12 11.90 37.50 0 37.50 0/1
chr1 17026232 rs677827 G C . PASS . . . . . . 36.32 69.99 129 1000.00 2.31 55.04 0 55.04 0/1
chr1 17026254 rs77347183 G A . PASS . . . . . . 36.47 69.91 161 1000.00 1.53 55.90 0 55.90 0/1
chr1 17026551 rs665763 G C . PASS . . . . . . 36.56 68.26 60 898.57 8.89 45.00 0 45.00 0/1
chr1 17029257 rs12125112 T C . PASS 0.1490000 0.3372000 0.1012000 0.2326000 0.3701000 0.2254000 36.56 67.09 83 1000.00 1.23 98.80 0 98.80 1/1
chr1 17029462 rs11260891 A G . PASS . . . . . . 36.14 69.02 140 1000.00 2.86 40.00 0 40.00 0/1
chr1 17029513 rs523936 C G . PASS . . . . . . 36.64 69.0 73 1000.00 8.14 45.21 0 45.21 0/1
chr1 17030325 rs601893 A G . PASS . . . . . . 36.08 69.38 20 438.34 0.00 65.00 0 65.00 0/1
chr1 17030336 rs4661915 C T . PASS . . . . . . 37.0 69.47 24 521.84 10.00 62.50 0 62.50 0/1
chr1 17033758 rs1736691 A G . PASS . . . . . . 36.28 66.88 85 1000.00 7.06 58.82 0 58.82 0/1
chr1 17033805 rs59259153 C T . PASS . . . . . . 35.68 66.38 148 1000.00 14.88 49.32 0 49.32 0/1
chr1 17033854 rs2476568 C T . PASS 0.4773000 0.5086000 0.5258000 0.5268000 0.5245000 0.5106000 36.47 66.72 133 1000.00 9.58 51.13 0 51.13 0/1
chr1 17034041 rs2743505 T C . PASS 0.6445000 0.7795000 0.7282000 0.7982000 0.7802000 0.7374000 36.76 68.77 148 1000.00 0.00 100.00 0 100.00 1/1
chr1 17034125 rs141324796,rs79472512 C CAGCT . PASS 0.1188000 0.3444000 0.4177000 0.3101000 0.3793000 0.2995000 36.58 68.44 147 1000.00 2.13 46.94 0 46.94 0/1
chr1 17034250 rs61773400 C G . PASS . . . . . . 36.43 69.0 21 825.53 0.00 100.00 0 100.00 1/1
chr1 17034455 rs140689885,rs58726851 CGCGCGCGT C . PASS 0.0446000 0.2277000 0.3135000 0.2028000 0.2812000 0.2021000 35.06 69.25 185 1000.00 6.67 34.59 0 34.59 0/1
chr1 17034728 rs638298 G C . PASS . . . . . . 35.29 69.29 13 204.63 0.00 53.85 0 53.85 0/1
chr1 17046361 rs3856291 A T . PASS . . . . . . 34.82 69.27 20 338.64 8.18 55.00 0 55.00 0/1
chr1 17046456 rs3856292 T C . PASS . . . . . . 36.1 69.1 144 1000.00 3.44 46.53 0 46.53 0/1
chr1 17046595 rs3856293 T C . PASS . . . . . . 36.26 68.77 189 1000.00 6.31 51.32 0 51.32 0/1
chr1 17046613 rs3856294 C T . PASS 0.0325000 0.0072000 0.0000000 0.0000000 0.0000000 0.0095847 36.31 68.75 168 1000.00 1.60 51.79 0 51.79 0/1
chr1 17046698 rs3982089 C G . PASS . . . . . . 37.0 68.3 67 1000.00 6.27 44.78 0 44.78 0/1
chr1 17060527 . A G . PASS . . . . . . 37.0 70.0 55 52.63 80.00 10.91 0 10.91 0/1
chr1 17060541 . G A . PASS . . . . . . 37.0 70.0 46 121.46 82.61 15.22 0 15.22 0/1
chr1 17060569 . G A . PASS . . . . . . 33.0 69.89 38 193.06 39.77 23.68 0 23.68 0/1
chr1 17060620 . C T . PASS . . . . . . 37.0 60.22 46 205.01 10.63 19.57 0 19.57 0/1
chr1 17060646 . G T . PASS . . . . . . 37.0 64.38 47 156.08 14.36 17.02 0 17.02 0/1
chr1 17060648 . C G . PASS . . . . . . 37.0 69.83 48 69.52 25.00 12.50 0 12.50 0/1
chr1 17060652 . G A . PASS . . . . . . 37.0 53.57 42 425.90 4.76 33.33 0 33.33 0/1
chr1 17060661 . CCG CTG . PASS . . . . . . 37.0 57.85 37 71.03 11.89 13.51 0 54.05 0/1
chr1 17060661 . CCG CCT . PASS . . . . . . 37.0 57.85 37 71.03 1.44 40.54 0 54.05 0/1
chr1 17060714 . C A . PASS . . . . . . 37.0 70.0 51 269.35 31.73 21.57 0 21.57 0/1
chr1 17060716 . A G . PASS . . . . . . 37.0 70.0 53 267.48 32.25 20.75 0 20.75 0/1
chr1 17060733 . C G . PASS . . . . . . 36.2 70.0 55 412.38 33.94 27.27 0 27.27 0/1
chr1 17060762 . G A . PASS . . . . . . 36.52 70.0 61 816.17 40.13 40.98 0 40.98 0/1
chr1 17060782 . T A . PASS . . . . . . 37.0 69.96 59 871.82 40.42 44.07 0 44.07 0/1
chr1 17060871 . A C . PASS . . . . . . 37.0 69.94 103 321.71 16.26 15.53 0 15.53 0/1
chr1 17060950 . ACA ATC . PASS . . . . . . 37.0 70.0 25 138.76 80.00 24.00 0 24.00 0/1
chr1 17076662 . C T . PASS . . . . . . 35.29 48.86 25 172.67 2.29 28.00 0 28.00 0/1
chr1 17076752 rs200840690 C G . PASS . . . . . . 36.29 51.06 21 598.26 1.12 80.95 0 80.95 0/1
chr1 17077100 . G C . PASS . . . . . . 37.0 52.68 149 308.55 4.38 12.75 0 12.75 0/1
chr1 17077171 . G A . PASS . . . . . . 35.0 55.5 110 113.68 18.79 10.91 0 10.91 0/1
chr1 17077196 rs373381630 G T . PASS . . . . . . 36.2 49.7 86 933.62 2.95 34.88 0 34.88 0/1
chr1 17077242 rs200157489 G C . PASS 0.3752000 0.3818000 0.2659000 0.3678000 0.4172000 0.3608000 36.58 47.12 85 1000.00 0.66 67.06 0 67.06 0/1
chr1 17077359 rs200904662 A G . PASS . . . . . . 37.0 48.57 30 169.62 9.52 23.33 0 23.33 0/1
chr1 17077407 . G T . PASS . . . . . . 37.0 49.33 22 147.78 15.15 27.27 0 27.27 0/1
chr1 17077428 . A G . PASS . . . . . . 37.0 49.87 17 542.92 2.35 88.24 0 88.24 0/1
chr1 17083577 rs2610655 C T . PASS . . . . . . 37.0 49.25 28 217.42 0.00 28.57 0 28.57 0/1
chr1 17083597 rs186155999 G A . PASS . . . . . . 36.4 58.05 42 664.51 0.00 47.62 0 47.62 0/1
chr1 17083652 rs113710576 C T . PASS . . . . . . 35.71 58.36 139 682.71 12.33 20.14 0 20.14 0/1
chr1 17083671 rs1057420 C G . PASS . . . . . . 36.64 62.73 179 791.04 6.47 18.44 0 18.44 0/1
chr1 17083685 rs3197973 C A . PASS . . . . . . 36.67 63.25 193 874.20 10.22 18.65 0 18.65 0/1
chr1 17083776 rs56318124 C A . PASS . . . . . . 35.86 48.57 169 307.87 26.66 12.43 0 12.43 0/1
chr1 17083778 rs28455793 C T . PASS . . . . . . 36.61 57.08 168 1000.00 46.98 36.31 0 36.31 0/1
chr1 17083806 . GTG GCA . PASS . . . . . . 36.62 49.38 148 283.00 46.85 12.16 1 31.76 0/1
chr1 17083807 rs9286084 T C . PASS 0.5545000 0.7435000 0.8819000 0.6789000 0.6472000 0.6897000 36.72 49.44 135 1000.00 26.94 31.85 1 31.85 0/1
chr1 17083816 rs11260920 G A . PASS . . . . . . 37.0 45.75 148 357.48 38.11 13.51 0 13.51 0/1
chr1 17083872 rs61635893 G A . PASS . . . . . . 36.38 51.05 161 1000.00 4.07 36.02 0 36.02 0/1
chr1 17083888 rs75141545 C T . PASS . . . . . . 36.71 51.59 153 1000.00 11.54 26.80 0 26.80 0/1
chr1 17084006 rs2446544 C T . PASS . . . . . . 36.35 54.38 229 1000.00 28.41 24.02 0 24.02 0/1
chr1 17084021 rs2446543 C G . PASS . . . . . . 36.59 55.33 278 1000.00 9.58 20.86 0 20.86 0/1
chr1 17084670 rs199536872 A G . PASS . . . . . . 36.48 54.43 80 675.45 3.04 28.75 0 28.75 0/1
chr1 17084815 rs11260922 G A . PASS 0.5575000 0.6037000 0.5575000 0.6272000 0.6278000 0.5917000 36.61 62.82 65 1000.00 5.65 93.85 0 93.85 1/1
chr1 17084968 rs2761533 G C . PASS . . . . . . 36.65 65.81 662 1000.00 3.08 61.33 0 61.33 0/1
chr1 17085165 rs2490828 G C . PASS 0.9879000 0.9323000 1.0000000 0.8966000 0.9826000 0.9633000 36.65 52.47 103 1000.00 0.00 100.00 0 100.00 1/1
chr1 17085255 rs2281029 A G . PASS 0.4455000 0.3876000 0.4683000 0.3509000 0.3722000 0.4087000 34.6 48.67 146 118.62 42.56 10.27 0 10.27 0/1
chr1 17085267 rs2077142 A G . PASS 0.7095000 0.5807000 0.9276000 0.5547000 0.6186000 0.6867000 36.08 50.46 147 56.08 47.72 8.84 0 8.84 0/1
chr1 17085412 rs872964 C T . PASS 0.4811000 0.4654000 0.4554000 0.4175000 0.4755000 0.4599000 36.6 60.21 509 1000.00 10.17 35.76 0 35.76 0/1
chr1 17085427 rs2002186 T C . PASS . . . . . . 36.73 60.89 505 1000.00 4.23 61.19 0 61.19 0/1
chr1 17085502 rs2329006 T C . PASS . . . . . . 36.67 64.7 271 1000.00 0.50 67.53 0 67.53 0/1
chr1 17085542 rs2261754 G A . PASS . . . . . . 36.45 55.98 285 1000.00 6.64 22.81 0 22.81 0/1
chr1 17085564 rs3851921 A G . PASS . . . . . . 36.9 56.49 329 1000.00 4.65 34.95 0 34.95 0/1
chr1 17085671 rs3863806 C G . PASS . . . . . . 36.17 57.92 272 1000.00 0.08 26.47 0 26.47 0/1
chr1 17085677 rs3863805 G A . PASS . . . . . . 36.48 58.23 258 1000.00 3.74 26.74 0 26.74 0/1
chr1 17085712 rs3863803 C T . PASS . . . . . . 36.82 57.35 228 1000.00 19.12 28.51 0 28.51 0/1
chr1 17085795 rs1057379 G T . PASS . . . . . . 36.05 52.24 315 566.48 32.08 12.06 0 12.06 0/1
chr1 17085834 rs2005622 G T . PASS . . . . . . 36.37 63.87 284 1000.00 0.00 100.00 0 100.00 1/1
chr1 17086052 rs1057286 T C . PASS 0.9992000 0.9928000 0.9990000 0.9871000 0.9939000 0.9948000 36.62 50.08 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 17086085 rs200532237 G GC . PASS . . . . . . 36.41 39.51 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 17086217 rs367801802 C G . PASS . . . . . . 36.33 49.0 122 336.05 10.75 14.75 0 14.75 0/1
chr1 17086450 rs200858362 C G . PASS . . . . . . 37.0 45.32 87 620.46 22.15 25.29 0 25.29 0/1
chr1 17086464 rs201407059 T C . PASS . . . . . . 37.0 44.4 78 568.17 16.15 25.64 0 25.64 0/1
chr1 17087072 rs79486936 G A . PASS . . . . . . 36.62 62.15 239 1000.00 2.95 40.17 0 40.17 0/1
chr1 17087262 rs2926375 C T . PASS . . . . . . 36.58 66.23 446 1000.00 16.20 38.57 0 38.57 0/1
chr1 17087292 rs2179161 A G . PASS . . . . . . 36.21 57.59 559 785.02 38.18 10.91 0 10.91 0/1
chr1 17087299 rs2179162 T C . PASS . . . . . . 36.47 59.06 592 990.11 30.52 11.49 0 11.49 0/1
chr1 17087305 rs12046578 G C . PASS . . . . . . 36.84 59.33 626 1000.00 28.96 11.98 0 11.98 0/1
chr1 17087365 rs2446556 C G . PASS . . . . . . 36.84 67.59 458 1000.00 2.19 79.91 0 79.91 0/1
chr1 17087432 rs2446554 G T . PASS . . . . . . 35.92 66.28 445 1000.00 11.94 24.94 0 24.94 0/1
chr1 17087459 rs11576695 A G . PASS . . . . . . 36.89 66.87 513 1000.00 15.23 20.86 0 20.86 0/1
chr1 17087465 rs11260924 G A . PASS . . . . . . 36.18 65.95 540 1000.00 2.55 27.04 0 27.04 0/1
chr1 17087521 rs11589598 G A . PASS . . . . . . 36.47 63.58 732 1000.00 7.48 18.72 0 18.72 0/1
chr1 17087531 . G A . PASS . . . . . . 35.98 68.28 777 1000.00 3.22 13.64 0 13.64 0/1
chr1 17087541 rs113982165,rs56364660 GGTGCT G . PASS . . . . . . 36.27 63.88 812 1000.00 3.37 32.27 0 32.27 0/1
chr1 17087582 rs10907280 G A . PASS . . . . . . 36.32 63.66 818 1000.00 4.13 51.71 0 51.71 0/1
chr1 17087593 rs12145944 C T . PASS . . . . . . 36.02 64.82 797 1000.00 5.76 19.95 0 19.95 0/1
chr1 17087640 rs200412600 A C . PASS . . . . . . 36.2 63.05 479 979.84 9.76 12.53 0 12.53 0/1
chr1 17087682 rs9725203 A G . PASS . . . . . . 36.78 64.13 232 1000.00 3.16 23.28 0 23.28 0/1
chr1 17183210 . A G . PASS 0.2557000 0.0720000 0.1240000 0.0835000 0.0470000 0.1284000 37.0 43.33 37 106.80 2.70 16.22 0 16.22 0/1
chr1 17183222 rs139261556 G A . PASS 0.2148000 0.0706000 0.1250000 0.0845000 0.0491000 0.1182000 35.91 49.55 43 285.58 2.11 25.58 0 25.58 0/1
chr1 17183245 rs189990419 G A . PASS . . . . . . 37.0 54.69 48 491.38 16.67 33.33 0 33.33 0/1
chr1 17183281 rs150144028 T G . PASS . . . . . . 37.0 53.91 43 752.90 20.51 51.16 0 51.16 0/1
chr1 17183451 . CCA CCG . PASS . . . . . . 37.0 40.81 32 375.47 37.50 12.50 0 50.00 0/1
chr1 17183451 . CCA CTG . PASS . . . . . . 37.0 40.81 32 375.47 12.50 37.50 0 50.00 0/1
chr1 17183487 rs202228202 A T . PASS . . . . . . 36.08 42.15 35 389.04 3.08 37.14 0 37.14 0/1
chr1 17183572 rs200192602 G T . PASS 0.0000000 0.0014000 0.0060000 0.0010000 0.0010000 0.0017971 37.0 47.0 39 96.62 2.56 15.38 0 15.38 0/1
chr1 17195145 rs116833708 G C . PASS . . . . . . 35.86 25.57 78 1000.00 8.79 53.85 0 53.85 0/1
chr1 17195231 . A G . PASS . . . . . . 37.0 46.6 55 219.69 101.82 18.18 0 18.18 0/1
chr1 17195301 rs199620659 C G . PASS . . . . . . 37.0 48.21 85 1000.00 13.39 49.41 0 49.41 0/1
chr1 17195387 rs370185151 A C . PASS . . . . . . 37.0 47.71 69 925.29 9.52 40.58 0 40.58 0/1
chr1 17195391 rs138058049 G C . PASS 0.4501000 0.3285000 0.3740000 0.3191000 0.3517000 0.3724000 37.0 47.38 73 1000.00 6.59 57.53 0 57.53 0/1
chr1 17195413 rs201549421 C T . PASS . . . . . . 36.6 47.0 52 1000.00 10.77 57.69 0 57.69 0/1
chr1 17248500 rs6683035 A G . PASS . . . . . . 36.64 70.0 64 1000.00 6.53 51.56 0 51.56 0/1
chr1 17248532 rs6586566 A G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.41 70.0 102 1000.00 0.00 100.00 0 100.00 1/1
chr1 17249395 rs6586567 A G . PASS 0.8132000 0.6816000 0.5774000 0.6839000 0.6094000 0.6817000 37.0 70.0 11 226.81 10.39 63.64 0 63.64 0/1
chr1 17251055 rs9435703 C T . PASS 0.4887000 0.5562000 0.5516000 0.5785000 0.5706000 0.5447000 37.0 70.0 41 846.61 9.55 58.54 0 58.54 0/1
chr1 17264296 rs9435792 G A . PASS . . . . . . 37.0 69.13 25 518.84 2.67 60.00 0 60.00 0/1
chr1 17264863 rs4275496 A G . PASS . . . . . . 37.0 69.08 25 435.29 18.46 52.00 0 52.00 0/1
chr1 17264890 rs72644310 T G . PASS 0.0008000 0.0159000 0.0010000 0.0547000 0.0082000 0.0151760 36.4 69.25 42 660.36 10.48 47.62 0 47.62 0/1
chr1 17265327 rs4269813 A G . PASS . . . . . . 35.67 70.0 24 259.22 8.33 37.50 0 37.50 0/1
chr1 17266355 . G GC . PASS 0.0008000 0.0115000 0.0000000 0.0239000 0.0041000 0.0073882 34.0 70.0 12 70.90 0.00 25.00 0 33.33 0/1
chr1 17266648 rs11203455 C T . PASS . . . . . . 33.4 70.0 17 298.04 7.06 58.82 0 58.82 0/1
chr1 17273493 rs7537563 A C . PASS . . . . . . 37.0 69.65 25 598.22 5.65 68.00 0 68.00 0/1
chr1 17275102 rs12081151 C G . PASS 0.2315000 0.1628000 0.1052000 0.1004000 0.2209000 0.1681000 37.0 69.95 36 773.97 1.01 61.11 0 61.11 0/1
chr1 17275337 rs143866013 C T . PASS . . . . . . 37.0 60.09 81 183.20 26.04 13.58 0 13.58 0/1
chr1 17280022 rs78911909 A T . PASS 0.3691000 0.1873000 0.1101000 0.1491000 0.2566000 0.2256000 36.2 69.33 60 397.35 6.67 25.00 0 25.00 0/1
chr1 17280025 rs78271317 T C . PASS 0.3691000 0.1873000 0.1101000 0.1491000 0.2566000 0.2256000 36.08 69.23 59 320.95 1.04 22.03 0 22.03 0/1
chr1 17280045 rs74875673 T C . PASS 0.3684000 0.1873000 0.1101000 0.1441000 0.2526000 0.2236000 37.0 69.83 39 100.76 46.15 15.38 0 15.38 0/1
chr1 17281759 rs151046905 C CG . PASS 0.2814000 0.1787000 0.1111000 0.1491000 0.2474000 0.1997000 36.25 70.0 25 449.47 8.57 56.00 0 56.00 0/1
chr1 17282425 rs2143808 G A . PASS 0.1861000 0.1628000 0.1101000 0.1014000 0.2362000 0.1603000 37.0 70.0 46 956.87 4.51 58.70 0 58.70 0/1
chr1 17282573 rs2273114 G A . PASS 0.1861000 0.1628000 0.1101000 0.1014000 0.2362000 0.1603000 36.27 70.0 140 1000.00 0.35 47.14 0 47.14 0/1
chr1 17285022 rs12097969 A G . PASS 0.2746000 0.1715000 0.1101000 0.1014000 0.2362000 0.1849000 36.25 70.0 37 512.48 4.05 43.24 0 43.24 0/1
chr1 17285298 rs41300134 C T . PASS 0.1823000 0.1628000 0.1101000 0.1014000 0.2362000 0.1593000 37.0 70.0 67 1000.00 2.78 65.67 0 65.67 0/1
chr1 17287414 rs2273113 T C . PASS 0.1846000 0.3256000 0.2024000 0.4324000 0.3988000 0.2993000 37.0 70.0 61 995.26 8.37 47.54 0 47.54 0/1
chr1 17287639 rs2273112 C T . PASS 0.1823000 0.1614000 0.1101000 0.1014000 0.2372000 0.1593000 36.0 70.0 98 1000.00 1.87 48.98 0 48.98 0/1
chr1 17292571 rs72639732 G A . PASS 0.0000000 0.0000000 0.0000000 0.0030000 0.0000000 0.0005990 36.37 70.0 142 1000.00 5.24 40.14 0 40.14 0/1
chr1 17295679 rs4920574 T C . PASS 0.9947000 0.9496000 0.9663000 0.8907000 0.9070000 0.9447000 36.88 70.0 102 1000.00 0.00 100.00 0 100.00 1/1
chr1 17297289 rs9435656 C T . PASS 0.3290000 0.7291000 0.8512000 0.7505000 0.6616000 0.6392000 35.36 70.0 47 708.98 8.12 46.81 0 46.81 0/1
chr1 17299014 rs6661019 A C . PASS 0.5499000 0.5245000 0.5556000 0.5626000 0.5552000 0.5511000 36.62 70.0 16 586.92 3.33 93.75 0 100.00 1/1
chr1 17301672 rs761423 T C . PASS 0.3835000 0.4380000 0.2401000 0.4443000 0.4008000 0.3778000 36.08 70.0 16 450.37 11.54 81.25 0 81.25 0/1
chr1 17301780 rs761422 A G . PASS 0.4743000 0.4582000 0.2401000 0.4861000 0.4131000 0.4153000 36.29 70.0 75 1000.00 3.45 45.33 0 45.33 0/1
chr1 17303589 rs2235932 C T . PASS 0.2224000 0.4914000 0.2331000 0.5795000 0.4438000 0.3768000 36.49 70.0 71 1000.00 0.00 100.00 0 100.00 1/1
chr1 17312592 rs15786 G A . PASS 0.0008000 0.0187000 0.0010000 0.0437000 0.0072000 0.0131790 36.29 70.0 64 1000.00 0.00 53.12 0 53.12 0/1
chr1 17312743 rs3170740 C T . PASS 0.1445000 0.4553000 0.2460000 0.5099000 0.3998000 0.3313000 36.81 70.0 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 17313157 rs2076605 G A . PASS 0.1679000 0.4582000 0.2599000 0.5080000 0.4335000 0.3468000 36.11 70.0 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 17313343 rs9435659 G A . PASS 0.1369000 0.4568000 0.2599000 0.5089000 0.4325000 0.3385000 35.22 70.0 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 17313654 rs761421 C T . PASS 0.1710000 0.4582000 0.2520000 0.5080000 0.4346000 0.3462000 36.29 70.0 84 1000.00 0.00 100.00 0 100.00 1/1
chr1 17314942 rs9435662 G A . PASS 0.1369000 0.4568000 0.2599000 0.5080000 0.4346000 0.3387000 36.67 69.72 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 17319011 rs2076603 G A . PASS 0.4145000 0.5216000 0.2589000 0.6153000 0.4663000 0.4485000 36.51 70.0 123 1000.00 0.00 100.00 0 100.00 1/1
chr1 17323449 rs9435736 T C . PASS 0.7383000 0.8876000 0.8383000 0.8211000 0.7219000 0.7925000 36.51 69.59 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 17371152 rs12073028 T C . PASS 0.4932000 0.5331000 0.2887000 0.6193000 0.4550000 0.4754000 37.0 69.23 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 17380497 rs2746462 G T . PASS 0.8797000 0.9769000 0.9960000 0.9722000 0.9918000 0.9571000 36.69 70.0 118 1000.00 0.00 100.00 0 100.00 1/1
chr1 17395480 rs2076599 G A . PASS 0.2973000 0.5360000 0.3938000 0.5905000 0.4652000 0.4415000 36.57 70.0 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 17395521 rs2076598 G A . PASS 0.2973000 0.5360000 0.3938000 0.5905000 0.4652000 0.4415000 36.33 70.0 89 1000.00 0.00 100.00 0 100.00 1/1
chr1 17396498 rs2076596 T C . PASS 0.2980000 0.5360000 0.3938000 0.5905000 0.4663000 0.4419000 36.2 70.0 15 579.06 0.00 100.00 0 100.00 1/1
chr1 17396703 rs2076595 T C . PASS 0.3094000 0.5360000 0.3929000 0.5905000 0.4663000 0.4447000 36.41 70.0 123 1000.00 0.00 100.00 0 100.00 1/1
chr1 17398066 rs875219 G C . PASS 0.4841000 0.5807000 0.4107000 0.6561000 0.5378000 0.5278000 36.7 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 17398069 rs875218 T C . PASS 0.4841000 0.5807000 0.4107000 0.6561000 0.5378000 0.5278000 36.37 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 17401283 rs3818041 C T . PASS 0.4849000 0.5821000 0.4028000 0.6561000 0.5378000 0.5266000 33.31 70.0 13 459.48 0.00 100.00 0 100.00 1/1
chr1 17402116 rs3818035 G T . PASS 0.4841000 0.5821000 0.4028000 0.6561000 0.5378000 0.5264000 35.59 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 17402135 rs3818034 T C . PASS 0.4834000 0.5821000 0.4028000 0.6561000 0.5378000 0.5262000 36.77 70.0 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 17402159 rs3818033 G A . PASS 0.4826000 0.5821000 0.4018000 0.6561000 0.5378000 0.5258000 36.03 70.0 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 17402255 rs3818032 C T . PASS 0.4834000 0.5807000 0.4028000 0.6561000 0.5378000 0.5260000 36.62 69.87 156 1000.00 0.00 100.00 0 100.00 1/1
chr1 17402347 rs2647205 C T . PASS 0.9705000 0.9914000 0.9960000 0.9732000 0.9918000 0.9832000 36.62 70.0 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 17402418 rs3818031 A G . PASS 0.4834000 0.5821000 0.4038000 0.6561000 0.5368000 0.5262000 36.2 70.0 15 579.06 0.00 100.00 0 100.00 1/1
chr1 17405809 rs2057096 G A . PASS 0.2950000 0.5259000 0.3879000 0.5726000 0.4642000 0.4345000 36.29 69.71 68 1000.00 0.00 100.00 0 100.00 1/1
chr1 17405916 rs2057095 C T . PASS 0.2935000 0.5259000 0.3879000 0.5726000 0.4642000 0.4341000 36.76 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 17405949 rs2057094 C T . PASS 0.5461000 0.5533000 0.3879000 0.5736000 0.4642000 0.5048000 37.0 69.33 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 17406015 rs2057093 C T . PASS 0.8593000 0.9424000 0.9812000 0.8946000 0.9151000 0.9133000 37.0 68.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 17410364 rs1883913 G A . PASS 0.2572000 0.5274000 0.3879000 0.5726000 0.4642000 0.4247000 35.96 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 17418883 rs2647184 A G . PASS 0.9667000 0.9813000 0.9970000 0.9463000 0.9918000 0.9756000 36.53 69.74 76 1000.00 0.00 100.00 0 100.00 1/1
chr1 17418894 rs2273111 A G . PASS 0.4266000 0.4986000 0.4048000 0.6332000 0.4959000 0.4872000 36.86 69.77 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 17419066 rs11203298 T C . PASS 0.4274000 0.4986000 0.4048000 0.6332000 0.4959000 0.4874000 37.0 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 17422302 rs2076608 T C . PASS 0.6868000 0.5303000 0.4196000 0.6322000 0.4959000 0.5631000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 17431277 rs6701159 G T . PASS 0.5983000 0.7032000 0.8284000 0.6869000 0.7751000 0.7115000 36.38 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 17431618 rs11203300 A G . PASS 0.4554000 0.7435000 0.8373000 0.7694000 0.7699000 0.6967000 36.45 70.0 22 871.45 0.00 100.00 0 100.00 1/1
chr1 17550225 rs3003481 T C . PASS 0.9894000 0.9971000 1.0000000 1.0000000 1.0000000 0.9968000 36.51 70.0 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 17550303 rs2293913 T C . PASS 0.1399000 0.2450000 0.2688000 0.3191000 0.2444000 0.2368000 37.0 70.0 13 346.11 0.00 76.92 0 76.92 0/1
chr1 17551034 rs2293915 A T . PASS 0.2799000 0.4323000 0.3909000 0.5606000 0.4622000 0.4153000 37.0 70.0 15 586.92 0.00 100.00 0 100.00 1/1
chr1 17555316 rs2977233 C G . PASS 0.3396000 0.2954000 0.0923000 0.4294000 0.3078000 0.2955000 36.59 70.0 65 967.07 11.03 44.62 0 44.62 0/1
chr1 17555508 rs2977234 G T . PASS 0.1831000 0.1902000 0.0585000 0.3539000 0.2914000 0.2145000 36.65 70.0 146 1000.00 1.93 47.26 0 47.26 0/1
chr1 17609448 rs2293920 G T . PASS 0.1725000 0.4150000 0.6230000 0.4374000 0.4540000 0.4050000 37.0 70.0 104 1000.00 4.02 42.31 0 42.31 0/1
chr1 17657664 . G T . PASS . . . . . . 37.0 70.0 90 68.41 4.44 10.00 0 10.00 0/1
chr1 17707739 rs1204898 T C . PASS 0.6089000 0.7305000 0.8155000 0.6978000 0.7883000 0.7202000 36.48 70.0 23 913.22 0.00 100.00 0 100.00 1/1
chr1 17718671 rs10709483 AG A . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 35.98 70.0 85 1000.00 0.00 100.00 0 100.00 1/1
chr1 17720439 rs6695849 T C . PASS 0.4864000 0.6254000 0.5268000 0.6133000 0.6483000 0.5709000 37.0 70.0 23 925.24 0.00 100.00 0 100.00 1/1
chr1 17720615 rs10458537 A C . PASS 0.4864000 0.6282000 0.5268000 0.6143000 0.6513000 0.5721000 37.0 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 17720686 rs34075690 AG A . PASS 0.5439000 0.6398000 0.5258000 0.6143000 0.6513000 0.5887000 36.38 70.0 21 819.12 0.00 100.00 0 100.00 1/1
chr1 17721388 rs6691485 C T . PASS 0.4841000 0.6268000 0.5268000 0.6153000 0.6503000 0.5713000 36.71 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 17723476 rs61476146 C CCA . PASS 0.4024000 0.3689000 0.1716000 0.3728000 0.3650000 0.3381000 37.0 70.0 13 491.94 0.00 100.00 0 100.00 1/1
chr1 17723739 rs12129196 G A . PASS 0.3994000 0.3674000 0.1696000 0.3728000 0.3640000 0.3365000 35.2 70.0 20 763.89 0.00 100.00 0 100.00 1/1
chr1 17725358 rs2244936 C G . PASS 0.6755000 0.6542000 0.5377000 0.6123000 0.6380000 0.6248000 36.18 69.49 117 1000.00 0.00 100.00 0 100.00 1/1
chr1 17736578 rs2762890 A G . PASS 0.6929000 0.6470000 0.5476000 0.6093000 0.6789000 0.6378000 37.0 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 17739586 rs942457 G A . PASS 0.3661000 0.3689000 0.1647000 0.3688000 0.3885000 0.3309000 36.68 69.89 76 1000.00 2.56 48.68 0 48.68 0/1
chr1 17752000 rs1324368 A G . PASS 0.3638000 0.3573000 0.1657000 0.3529000 0.3885000 0.3257000 36.77 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 17929980 rs1193338 C G . PASS 0.3230000 0.5173000 0.6448000 0.5268000 0.3517000 0.4613000 36.72 69.62 213 1000.00 0.00 100.00 0 100.00 1/1
chr1 17944934 rs139656107 C T . PASS 0.0008000 0.0043000 0.0000000 0.0239000 0.0051000 0.0065895 37.0 70.0 100 1000.00 1.37 63.00 0 63.00 0/1
chr1 17965194 rs2297916 G A . PASS 0.2050000 0.0720000 0.0139000 0.1312000 0.0818000 0.1092000 35.76 70.0 76 914.09 7.35 38.16 0 38.16 0/1
chr1 17991052 rs6695710 T C . PASS 0.9992000 1.0000000 1.0000000 1.0000000 1.0000000 0.9998000 36.7 70.0 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 18021867 rs2279816 T C . PASS 0.6740000 0.8746000 0.9077000 0.8161000 0.9141000 0.8243000 37.0 70.0 20 799.93 0.00 100.00 0 100.00 1/1
chr1 18023290 rs2270979 C T . PASS 0.5885000 0.8689000 0.8363000 0.8171000 0.9090000 0.7857000 36.0 69.44 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 18023365 rs2270978 C T . PASS 0.5855000 0.8674000 0.8363000 0.8171000 0.9090000 0.7847000 36.73 69.85 133 1000.00 0.00 100.00 0 100.00 1/1
chr1 18023509 rs2270977 T C . PASS 0.7186000 0.8775000 0.8988000 0.8171000 0.9131000 0.8347000 36.68 70.0 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 18023690 rs2270976 A G . PASS 0.6694000 0.8746000 0.8988000 0.8211000 0.9162000 0.8227000 36.67 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 18023877 rs11589634 G A . PASS 0.1082000 0.0490000 0.0615000 0.1153000 0.1258000 0.0954000 36.27 70.0 87 1000.00 5.25 56.32 0 56.32 0/1
chr1 18149510 rs694214 G T . PASS 0.1430000 0.3228000 0.4315000 0.4374000 0.2485000 0.3057000 36.72 70.0 95 1000.00 5.58 45.26 0 45.26 0/1
chr1 18149566 rs2296035 C A . PASS 0.3215000 0.5807000 0.6865000 0.4732000 0.4315000 0.4828000 36.37 70.0 123 1000.00 1.20 46.34 0 46.34 0/1
chr1 18152164 . C A . PASS . . . . . . 37.0 70.0 25 55.21 44.00 16.00 0 16.00 0/1
chr1 18152582 rs478698 C T . PASS 0.0204000 0.1023000 0.1796000 0.1948000 0.1564000 0.1254000 36.12 70.0 79 1000.00 0.80 51.90 0 51.90 0/1
chr1 18323910 rs11203252 A C . PASS 0.4879000 0.3184000 0.3403000 0.4135000 0.3926000 0.4012000 37.0 70.0 78 1000.00 12.50 41.03 0 41.03 0/1
chr1 18554345 rs61762155 T C . PASS 0.0545000 0.2392000 0.1756000 0.2893000 0.2198000 0.1839000 37.0 70.0 14 301.32 1.59 64.29 0 64.29 0/1
chr1 18554356 rs3738087 C T . PASS 0.0545000 0.2392000 0.1756000 0.2893000 0.2188000 0.1837000 36.0 70.0 19 399.57 3.51 63.16 0 63.16 0/1
chr1 18651820 rs223166 A G . PASS 0.9962000 0.8991000 0.8581000 0.9374000 0.9458000 0.9333000 37.0 70.0 18 716.39 0.00 100.00 0 100.00 1/1
chr1 18661583 rs536540 T C . PASS 0.7436000 0.2695000 0.3502000 0.1541000 0.2352000 0.3810000 37.0 70.0 18 247.52 16.67 44.44 0 44.44 0/1
chr1 18702988 rs10796450 T C . PASS 0.9728000 0.9957000 0.9990000 0.9990000 0.9949000 0.9908000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 18703208 rs10796451 C G . PASS 0.7685000 0.7954000 0.7292000 0.7575000 0.6534000 0.7396000 35.0 70.0 14 159.85 38.10 42.86 0 42.86 0/1
chr1 18704862 rs1043459 A G . PASS 0.7655000 0.5634000 0.6052000 0.4433000 0.5798000 0.6042000 35.8 70.0 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 18807536 rs7512414 G T . PASS 0.1233000 0.1239000 0.0377000 0.1233000 0.0634000 0.0944000 36.69 70.0 91 1000.00 8.06 42.86 0 42.86 0/1
chr1 18807620 rs34109355 G C . PASS 0.1233000 0.1239000 0.0377000 0.1233000 0.0634000 0.0944000 36.65 70.0 58 1000.00 10.34 58.62 0 58.62 0/1
chr1 18807755 rs34976233 G A . PASS 0.1233000 0.1239000 0.0377000 0.1233000 0.0634000 0.0944000 36.35 70.0 72 1000.00 2.85 51.39 0 51.39 0/1
chr1 18807781 rs35013594 C T . PASS 0.1021000 0.1239000 0.0377000 0.1233000 0.0634000 0.0889000 36.69 70.0 78 1000.00 0.00 50.00 0 50.00 0/1
chr1 18807897 rs2992755 C G . PASS 0.5688000 0.7147000 0.8958000 0.6113000 0.4847000 0.6470000 36.29 70.0 101 1000.00 8.85 33.66 0 33.66 0/1
chr1 18808056 rs7515150 G C . PASS 0.1233000 0.1239000 0.0377000 0.1233000 0.0634000 0.0944000 37.0 70.0 84 1000.00 1.61 44.05 0 44.05 0/1
chr1 18808069 rs7528572 A G . PASS 0.1233000 0.1239000 0.0377000 0.1233000 0.0634000 0.0944000 37.0 70.0 79 1000.00 3.31 45.57 0 45.57 0/1
chr1 18808292 rs2992753 C A . PASS 0.6604000 0.7277000 0.8958000 0.6113000 0.4847000 0.6729000 36.27 69.39 92 1000.00 3.03 35.87 0 35.87 0/1
chr1 18808465 rs3007718 T A . PASS 0.6611000 0.7277000 0.8948000 0.6113000 0.4836000 0.6727000 37.0 70.0 61 907.58 8.62 44.26 0 44.26 0/1
chr1 18808526 rs2992752 A C . PASS 0.6611000 0.7277000 0.8948000 0.6113000 0.4836000 0.6727000 37.0 70.0 53 597.49 4.17 35.85 0 35.85 0/1
chr1 18809896 rs2992745 A T . PASS 0.6248000 0.7061000 0.8958000 0.5815000 0.4243000 0.6428000 37.0 70.0 15 127.09 0.00 33.33 0 33.33 0/1
chr1 19027239 rs2743201 A G . PASS 0.6430000 0.3876000 0.6042000 0.2575000 0.4703000 0.4886000 36.26 70.0 148 1000.00 9.42 43.92 0 43.92 0/1
chr1 19029546 rs1416464 A G . PASS 0.6445000 0.3876000 0.6071000 0.2575000 0.4714000 0.4898000 37.0 70.0 39 602.01 11.11 46.15 0 46.15 0/1
chr1 19175846 rs28374389 T C . PASS 0.1369000 0.2450000 0.0020000 0.2087000 0.0695000 0.1260000 37.0 69.62 92 1000.00 1.44 57.61 0 57.61 0/1
chr1 19181015 rs34447754 G C . PASS 0.2602000 0.2507000 0.1032000 0.3191000 0.2556000 0.2382000 36.71 70.0 75 1000.00 0.20 54.67 0 54.67 0/1
chr1 19181082 rs28470550 A C . PASS 0.2602000 0.2536000 0.1032000 0.3201000 0.2556000 0.2388000 35.97 70.0 122 1000.00 3.70 57.38 0 57.38 0/1
chr1 19181393 rs35874116 T C . PASS 0.3389000 0.2695000 0.1042000 0.3241000 0.2771000 0.2670000 36.85 70.0 140 1000.00 2.86 55.71 0 55.71 0/1
chr1 19184077 rs68081213 A G . PASS 0.3631000 0.2853000 0.1052000 0.3260000 0.2751000 0.2758000 37.0 70.0 137 1000.00 2.16 50.36 0 50.36 0/1
chr1 19186129 rs9701796 G C . PASS 0.8207000 0.8415000 0.7748000 0.7833000 0.7751000 0.7979000 36.61 70.0 62 1000.00 3.23 50.00 0 50.00 0/1
chr1 19199473 rs28700162 T A . PASS 0.1989000 0.5519000 0.6558000 0.4513000 0.6135000 0.4714000 36.17 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 19200908 rs28529092 G C . PASS 0.4349000 0.5807000 0.6637000 0.4692000 0.6421000 0.5485000 37.0 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 19201184 rs6665917 G C . PASS 0.5174000 0.7666000 0.7024000 0.7038000 0.7311000 0.6683000 36.29 70.0 17 658.45 0.00 100.00 0 100.00 1/1
chr1 19201211 rs35163726 T TG . PASS 0.5204000 0.7622000 0.6607000 0.7008000 0.7055000 0.6546000 37.0 70.0 11 408.41 0.00 100.00 0 100.00 1/1
chr1 19201956 rs2230708 A G . PASS 0.7050000 0.8112000 0.7063000 0.7386000 0.7587000 0.7372000 36.91 70.0 134 1000.00 0.00 100.00 0 100.00 1/1
chr1 19202770 rs7550822 T C . PASS 0.7534000 0.9524000 1.0000000 0.9732000 0.9826000 0.9195000 36.72 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 19202896 rs2230707 G A . PASS 0.4569000 0.6513000 0.6002000 0.4453000 0.4857000 0.5160000 35.71 70.0 74 878.33 3.47 37.84 0 37.84 0/1
chr1 19202917 rs7550938 T C . PASS 0.4728000 0.7680000 0.7063000 0.7137000 0.7382000 0.6609000 35.92 70.0 78 1000.00 0.00 100.00 0 100.00 1/1
chr1 19202926 rs2230706 T C . PASS 0.4728000 0.7680000 0.7044000 0.7117000 0.7382000 0.6601000 35.52 70.0 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 19203997 rs2230705 C G . PASS 0.7330000 0.7363000 0.4683000 0.7117000 0.5573000 0.6416000 36.1 68.92 173 1000.00 8.45 53.76 0 53.76 0/1
chr1 19204154 rs6426813 G A . PASS 0.6989000 0.8588000 0.9583000 0.7276000 0.8620000 0.8109000 36.2 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 19204173 rs6426814 A G . PASS 0.9039000 0.8689000 0.8621000 0.7604000 0.7352000 0.8289000 37.0 70.0 17 166.99 15.69 35.29 0 35.29 0/1
chr1 19208145 rs112548638 G GGGTTGCCT . PASS 0.9440000 0.9841000 1.0000000 1.0000000 1.0000000 0.9830000 36.56 70.0 52 1000.00 1.66 98.08 0 100.00 1/1
chr1 19209543 rs6426611 A G . PASS 0.8880000 0.9827000 1.0000000 1.0000000 1.0000000 0.9681000 37.0 69.23 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 19215834 rs941495 T C . PASS 0.9970000 0.9669000 1.0000000 0.9553000 0.9939000 0.9844000 37.0 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 19216428 rs4592275 G A . PASS 0.0522000 0.2219000 0.0992000 0.2177000 0.1472000 0.1370000 37.0 70.0 37 983.96 0.20 72.97 0 72.97 0/1
chr1 19243589 rs3748586 A G . PASS 0.3752000 0.3689000 0.2728000 0.5964000 0.5624000 0.4347000 37.0 70.0 24 480.07 7.14 58.33 0 58.33 0/1
chr1 19246320 rs41273181 G A . PASS 0.2050000 0.0533000 0.0000000 0.0895000 0.0082000 0.0811000 35.33 70.0 55 1000.00 4.34 65.45 0 65.45 0/1
chr1 19247509 rs35477144 G A . PASS 0.2050000 0.0533000 0.0000000 0.0895000 0.0082000 0.0811000 37.0 70.0 54 1000.00 0.74 55.56 0 55.56 0/1
chr1 19331465 rs4912029 G T . PASS 0.0938000 0.4986000 0.5565000 0.3111000 0.2904000 0.3251000 34.6 69.33 60 963.84 3.33 50.00 0 50.00 0/1
chr1 19331493 rs1078894 T C . PASS 0.3752000 0.5720000 0.5585000 0.4602000 0.3160000 0.4449000 36.85 69.75 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 19401405 rs2281748 G A . PASS 0.1770000 0.4597000 0.6101000 0.4145000 0.3620000 0.3872000 35.62 70.0 98 1000.00 4.95 53.06 0 53.06 0/1
chr1 19411129 rs1043905 A G . PASS 0.8366000 0.7349000 0.8105000 0.6074000 0.5685000 0.7189000 36.56 70.0 110 1000.00 0.00 100.00 0 100.00 1/1
chr1 19413261 rs12584 T A . PASS 0.5408000 0.6844000 0.7589000 0.5785000 0.4857000 0.6014000 36.8 69.66 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 19413420 rs2274008 T G . PASS 0.8366000 0.7334000 0.8105000 0.6064000 0.5675000 0.7183000 37.0 70.0 12 461.62 0.00 100.00 0 100.00 1/1
chr1 19415304 rs1043899 C T . PASS 0.5091000 0.6787000 0.7589000 0.5775000 0.4847000 0.5919000 36.56 70.0 82 1000.00 0.00 100.00 0 100.00 1/1
chr1 19420392 rs1106839 G A . PASS 0.8215000 0.7334000 0.8105000 0.6054000 0.5675000 0.7141000 36.14 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 19423565 rs2296105 T C . PASS 0.5530000 0.6844000 0.7589000 0.5785000 0.4847000 0.6044000 36.48 70.0 23 913.22 0.00 100.00 0 100.00 1/1
chr1 19426199 rs2236377 G A . PASS 0.8215000 0.7334000 0.8105000 0.6064000 0.5675000 0.7143000 37.0 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 19433449 rs6426677 A G . PASS 0.8366000 0.7334000 0.8105000 0.6083000 0.5706000 0.7192000 37.0 70.0 134 1000.00 0.00 100.00 0 100.00 1/1
chr1 19437185 rs10916957 G T . PASS 0.2844000 0.2003000 0.0704000 0.1650000 0.0900000 0.1677000 37.0 70.0 34 195.20 19.12 23.53 0 23.53 0/1
chr1 19440107 rs9661719 A G . PASS 0.8215000 0.7334000 0.8105000 0.6054000 0.5613000 0.7129000 36.14 70.0 14 537.29 0.00 100.00 0 100.00 1/1
chr1 19441212 rs2274003 A G . PASS 0.6611000 0.7133000 0.8006000 0.6054000 0.5532000 0.6641000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 19446587 rs6693149 C T . PASS 0.2897000 0.2017000 0.0704000 0.1660000 0.0879000 0.1691000 37.0 70.0 19 244.50 0.00 42.11 0 42.11 0/1
chr1 19447819 rs35802543 T C . PASS 0.0477000 0.0461000 0.0010000 0.1064000 0.0276000 0.0459000 36.78 70.0 108 1000.00 1.95 50.93 0 50.93 0/1
chr1 19447843 rs1044010 C G . PASS 0.5424000 0.6844000 0.7589000 0.5775000 0.4796000 0.6004000 36.81 69.68 124 1000.00 0.00 100.00 0 100.00 1/1
chr1 19450938 rs6681943 G A . PASS 0.0537000 0.0461000 0.0010000 0.1064000 0.0276000 0.0475000 37.0 70.0 16 170.00 12.50 37.50 0 37.50 0/1
chr1 19464773 rs2274001 C T . PASS 0.7587000 0.7248000 0.8105000 0.6044000 0.5613000 0.6949000 37.0 70.0 19 758.16 0.00 100.00 0 100.00 1/1
chr1 19470662 rs4912050 T C . PASS 0.0159000 0.0807000 0.0010000 0.0656000 0.0143000 0.0315000 37.0 70.0 11 101.50 9.09 36.36 0 36.36 0/1
chr1 19474975 rs2296108 T G . PASS 0.4463000 0.5360000 0.7579000 0.4125000 0.4571000 0.5168000 37.0 70.0 10 142.13 0.00 50.00 0 50.00 0/1
chr1 19483209 rs10799710 A G . PASS 0.5189000 0.5605000 0.7986000 0.4414000 0.5204000 0.5657000 33.57 70.0 19 178.71 12.03 36.84 0 36.84 0/1
chr1 19486839 rs946419 T C . PASS 0.8374000 0.7320000 0.8105000 0.6064000 0.5613000 0.7171000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 19487656 rs3748759 T C . PASS 0.5197000 0.5548000 0.7986000 0.4294000 0.5184000 0.5623000 36.4 70.0 41 667.52 2.93 48.78 0 48.78 0/1
chr1 19488839 rs1999967 C A . PASS 0.8207000 0.7305000 0.8115000 0.6044000 0.5613000 0.7123000 34.75 69.38 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 19491514 rs12133185 G C . PASS 0.0507000 0.0461000 0.0010000 0.1074000 0.0276000 0.0469000 37.0 70.0 27 383.35 20.37 44.44 0 44.44 0/1
chr1 19491857 rs3748757 T C . PASS 0.8366000 0.7363000 0.8105000 0.6083000 0.5624000 0.7181000 36.7 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 19499560 rs16862578 T C . PASS 0.2814000 0.1671000 0.0109000 0.1640000 0.0307000 0.1386000 36.43 70.0 44 700.26 28.35 47.73 0 47.73 0/1
chr1 19499835 rs951908 G C . PASS 0.8215000 0.7320000 0.8105000 0.6044000 0.5603000 0.7123000 37.0 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 19499873 rs952789 G T . PASS 0.0061000 0.0403000 0.0010000 0.1054000 0.0266000 0.0337000 37.0 70.0 41 675.38 12.20 48.78 0 48.78 0/1
chr1 19499954 rs952790 G A . PASS 0.0061000 0.0403000 0.0010000 0.1054000 0.0266000 0.0337000 36.6 69.33 70 971.19 6.80 41.43 0 42.86 0/1
chr1 19500729 rs6694521 G A . PASS 0.8215000 0.7320000 0.8105000 0.6044000 0.5603000 0.7123000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 19510394 rs3762396 A G . PASS 0.8374000 0.7305000 0.8105000 0.6064000 0.5613000 0.7169000 36.73 69.56 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 19513570 rs72158799,rs59833909 TTA T . PASS . . . . . . 35.94 70.0 20 630.63 4.44 90.00 0 90.00 0/1
chr1 19518659 rs11588032 G A . PASS 0.4470000 0.4942000 0.6885000 0.4105000 0.4110000 0.4878000 32.64 70.0 27 297.70 2.02 40.74 0 40.74 0/1
chr1 19557281 rs12128595 G C . PASS 0.1619000 0.0778000 0.0823000 0.1014000 0.0695000 0.1040000 35.67 70.0 18 273.12 11.11 50.00 0 50.00 0/1
chr1 19557713 rs2275403 G C . PASS 0.8699000 0.6571000 0.7401000 0.5159000 0.4847000 0.6679000 36.72 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 19565338 rs709682 C T . PASS 0.3162000 0.0980000 0.1240000 0.1173000 0.1258000 0.1701000 35.91 70.0 36 754.10 6.57 61.11 0 61.11 0/1
chr1 19565344 rs709683 C G . PASS 0.7315000 0.5101000 0.7401000 0.3469000 0.4601000 0.5723000 36.45 70.0 36 761.97 6.57 61.11 0 61.11 0/1
chr1 19566881 rs12084825 C T . PASS 0.1051000 0.1455000 0.0010000 0.1660000 0.0225000 0.0859000 36.29 70.0 133 1000.00 0.49 51.13 0 51.13 0/1
chr1 19568972 rs710865 A G . PASS 0.7625000 0.5115000 0.7401000 0.3509000 0.4622000 0.5819000 35.87 70.0 103 1000.00 1.58 51.46 0 51.46 0/1
chr1 19570426 rs2294944 C G . PASS 0.2216000 0.0807000 0.0823000 0.1014000 0.0665000 0.1196000 35.5 70.0 66 731.18 0.00 36.36 0 36.36 0/1
chr1 19581226 rs735026 G A . PASS 0.4932000 0.1830000 0.1032000 0.2266000 0.1534000 0.2518000 37.0 70.0 17 375.83 20.32 64.71 0 64.71 0/1
chr1 19581467 rs1774081 C T . PASS 0.4932000 0.1830000 0.1012000 0.2266000 0.1534000 0.2514000 37.0 70.0 16 170.00 0.00 37.50 0 37.50 0/1
chr1 19582563 rs1557133 G A . PASS 0.9206000 0.8833000 0.9266000 0.8549000 0.8978000 0.8990000 35.91 70.0 82 1000.00 3.77 53.66 0 53.66 0/1
chr1 19583684 rs1774074 C T . PASS 0.4932000 0.1830000 0.1012000 0.2266000 0.1534000 0.2514000 36.56 70.0 55 917.77 1.35 49.09 0 49.09 0/1
chr1 19583725 rs1738017 T C . PASS 0.4932000 0.1830000 0.1012000 0.2266000 0.1534000 0.2514000 37.0 70.0 27 387.51 3.70 44.44 0 44.44 0/1
chr1 19584004 rs1042380 G A . PASS 0.4932000 0.1830000 0.1012000 0.2266000 0.1534000 0.2514000 37.0 70.0 76 950.11 5.08 38.16 0 38.16 0/1
chr1 19585207 rs2294939 G A . PASS 0.0870000 0.0908000 0.1012000 0.1262000 0.1431000 0.1092000 37.0 70.0 64 1000.00 3.12 50.00 0 50.00 0/1
chr1 19596841 rs7536049 G A . PASS 0.9221000 0.8689000 0.7966000 0.8857000 0.8538000 0.8688000 37.0 70.0 15 214.77 0.00 46.67 0 46.67 0/1
chr1 19611241 rs1738023 T C . PASS 0.6415000 0.8646000 0.8502000 0.8579000 0.8967000 0.8077000 36.51 69.89 165 1000.00 2.24 44.24 0 44.24 0/1
chr1 19611410 rs1968022 C G . PASS . . . . . . 36.25 69.94 16 616.68 0.00 100.00 0 100.00 1/1
chr1 19611487 rs59348345 A T . PASS 0.2254000 0.0288000 0.0000000 0.0656000 0.0266000 0.0819000 36.7 69.3 100 1000.00 7.00 40.00 0 40.00 0/1
chr1 19612477 rs2231198 C T . PASS 0.3646000 0.5432000 0.6905000 0.3817000 0.3896000 0.4633000 36.2 69.91 119 1000.00 7.13 37.82 0 37.82 0/1
chr1 19652131 rs66513267 GT G . PASS 0.2685000 0.1844000 0.2411000 0.1203000 0.1370000 0.1959000 37.0 68.89 18 619.03 33.33 16.67 0 100.00 0/1
chr1 19652132 rs214315 T G . PASS 0.6694000 0.7795000 0.7589000 0.8559000 0.8507000 0.7756000 37.0 68.89 18 619.03 6.67 83.33 0 100.00 0/1
chr1 19671766 rs72651465 T A . PASS 0.0008000 0.0058000 0.0000000 0.0060000 0.0010000 0.0023962 36.08 70.0 22 428.17 4.90 59.09 0 59.09 0/1
chr1 19701015 rs3748753 G A . PASS 0.4947000 0.4726000 0.4444000 0.5924000 0.6053000 0.5228000 37.0 70.0 17 674.61 0.00 100.00 0 100.00 1/1
chr1 19948507 rs728611 A G . PASS 0.7057000 0.2032000 0.1419000 0.2346000 0.2873000 0.3462000 37.0 70.0 27 554.58 4.17 59.26 0 59.26 0/1
chr1 19950062 rs1737428 T C . PASS 0.7050000 0.2032000 0.1419000 0.2346000 0.2853000 0.3456000 36.73 69.95 83 1000.00 1.20 53.01 0 53.01 0/1
chr1 19972586 rs11810271 A G . PASS 0.8593000 0.2594000 0.1617000 0.2495000 0.2740000 0.3990000 36.4 70.0 44 658.49 7.27 45.45 0 45.45 0/1
chr1 19981451 rs3828101 A G . PASS 0.6172000 0.4741000 0.1677000 0.5070000 0.3517000 0.4329000 37.0 70.0 66 1000.00 6.06 50.00 0 50.00 0/1
chr1 19981791 rs2294630 A G . PASS 0.6997000 0.4827000 0.1677000 0.5080000 0.3507000 0.4559000 36.54 70.0 40 921.15 8.08 65.00 0 65.00 0/1
chr1 19983863 rs35989027,rs3833542 T TGG . PASS 0.6543000 0.6023000 0.3929000 0.6769000 0.6472000 0.5976000 37.0 70.0 13 193.21 30.77 30.77 0 53.85 0/1
chr1 20020992 . CAC CGT . PASS . . . . . . 36.44 70.0 140 1000.00 0.42 29.29 0 30.71 0/1
chr1 20097822 rs11551819 G A . PASS 0.1089000 0.0648000 0.0010000 0.1382000 0.1135000 0.0879000 36.47 70.0 91 1000.00 0.00 100.00 0 100.00 1/1
chr1 20097941 rs10917536 G T . PASS 0.3918000 0.3833000 0.4315000 0.3698000 0.3139000 0.3790000 36.52 70.0 151 1000.00 0.00 100.00 0 100.00 1/1
chr1 20098066 rs41310424 A G . PASS 0.1089000 0.0648000 0.0010000 0.1382000 0.1135000 0.0879000 37.0 70.0 18 716.39 0.00 100.00 0 100.00 1/1
chr1 20098079 rs41312010 C A . PASS 0.1089000 0.0634000 0.0010000 0.1382000 0.1135000 0.0877000 37.0 70.0 12 461.62 0.00 100.00 0 100.00 1/1
chr1 20140973 rs35541730 G T . PASS 0.0015000 0.0245000 0.0020000 0.0318000 0.0634000 0.0230000 36.8 69.66 116 1000.00 0.09 50.86 0 50.86 0/1
chr1 20141283 rs1541184 C T . PASS 0.1346000 0.2680000 0.1776000 0.0497000 0.1708000 0.1518000 36.09 70.0 95 1000.00 0.04 55.79 0 55.79 0/1
chr1 20141528 rs1541185 C T . PASS 0.2511000 0.3761000 0.3323000 0.2416000 0.2802000 0.2885000 36.14 69.64 108 1000.00 3.31 51.85 0 51.85 0/1
chr1 20216860 rs10799593 G A . PASS 0.6241000 0.5375000 0.2331000 0.4970000 0.3487000 0.4541000 36.25 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 20221013 rs372964689 TCTAAGTCAG T . PASS 0.0620000 0.1873000 0.0685000 0.1233000 0.0706000 0.0946000 37.0 70.0 29 362.89 9.20 41.38 0 41.38 0/1
chr1 20221029 rs199563201 G GA . PASS 0.0620000 0.1873000 0.0685000 0.1233000 0.0706000 0.0946000 37.0 70.0 29 365.90 16.09 41.38 0 41.38 0/1
chr1 20224152 rs61769077 G A . PASS 0.0681000 0.0360000 0.0000000 0.0557000 0.0521000 0.0443000 35.86 70.0 51 667.18 4.48 41.18 0 41.18 0/1
chr1 20305065 rs10732279 C T . PASS 0.7950000 0.7954000 0.9425000 0.7714000 0.8681000 0.8343000 36.57 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 20348296 rs35342858 C CTT . PASS 0.5431000 0.6110000 0.5605000 0.6829000 0.5941000 0.5940000 37.0 70.0 16 112.64 20.00 31.25 0 31.25 0/1
chr1 20442054 rs584367 T C . PASS 0.9660000 0.6974000 0.7569000 0.5934000 0.7485000 0.7694000 35.8 70.0 59 1000.00 5.08 50.85 0 50.85 0/1
chr1 20466830 rs12065685 T C . PASS 0.1755000 0.1499000 0.0734000 0.1163000 0.1687000 0.1382000 35.91 70.0 11 411.98 0.00 100.00 0 100.00 1/1
chr1 20470148 rs6657574 C T . PASS 0.0681000 0.1023000 0.0198000 0.1531000 0.0787000 0.0823000 36.52 70.0 73 780.05 13.81 34.25 0 34.25 0/1
chr1 20490518 rs6426616 T C . PASS 0.7466000 0.4942000 0.7272000 0.5835000 0.6697000 0.6599000 36.76 70.0 95 1000.00 4.84 52.63 0 52.63 0/1
chr1 20501442 rs10916718 T C . PASS 0.3986000 0.3588000 0.5486000 0.3996000 0.2863000 0.4016000 35.15 69.23 53 819.24 8.75 47.17 0 49.06 0/1
chr1 20501670 rs41264517 G A . PASS 0.0008000 0.0187000 0.0000000 0.0229000 0.0051000 0.0083866 35.0 70.0 32 348.44 12.50 37.50 0 37.50 0/1
chr1 20503710 rs10753483 G A . PASS 0.4100000 0.5980000 0.6845000 0.5835000 0.7607000 0.5946000 37.0 70.0 12 349.11 6.67 83.33 0 83.33 0/1
chr1 20637043 rs12726937 C T . PASS 0.1135000 0.3069000 0.3740000 0.2207000 0.2536000 0.2416000 35.96 70.0 49 756.74 1.24 46.94 0 46.94 0/1
chr1 20637374 rs10916761 T C . PASS 0.9349000 0.6873000 0.9325000 0.6451000 0.6380000 0.7839000 37.0 70.0 16 420.61 12.50 75.00 0 75.00 0/1
chr1 20649814 rs4655194 T C . PASS 0.6324000 0.5519000 0.9087000 0.4324000 0.4836000 0.6076000 37.0 70.0 25 393.53 14.00 48.00 0 48.00 0/1
chr1 20656824 rs2072752 A G . PASS 0.0113000 0.1859000 0.3601000 0.1670000 0.2311000 0.1799000 36.79 70.0 109 1000.00 2.02 53.21 0 53.21 0/1
chr1 20657352 rs2072753 T C . PASS 0.6210000 0.5562000 0.9097000 0.4314000 0.4826000 0.6050000 36.68 70.0 76 1000.00 0.21 48.68 0 48.68 0/1
chr1 20662938 rs10916769 A G . PASS 0.1641000 0.2046000 0.3601000 0.1720000 0.2321000 0.2240000 37.0 70.0 83 1000.00 0.12 46.99 0 46.99 0/1
chr1 20671961 rs11582960 G A . PASS 0.2443000 0.3458000 0.3532000 0.3181000 0.2781000 0.3017000 35.0 70.0 33 584.04 6.06 54.55 0 54.55 0/1
chr1 20672101 rs4655200 C T . PASS 0.2443000 0.3458000 0.3532000 0.3171000 0.2761000 0.3011000 36.5 70.0 38 843.64 1.32 63.16 0 63.16 0/1
chr1 20680718 rs2072751 G A . PASS 0.2080000 0.1801000 0.2887000 0.2237000 0.2382000 0.2294000 37.0 69.35 81 1000.00 6.93 38.27 0 38.27 0/1
chr1 20680760 rs230180 A G . PASS 0.5681000 0.5490000 0.9087000 0.4284000 0.4755000 0.5879000 35.5 68.75 39 494.46 0.32 41.03 0 41.03 0/1
chr1 20827216 rs595980 C T . PASS 0.0272000 0.1023000 0.0010000 0.1988000 0.0501000 0.0713000 36.11 70.0 71 857.61 6.16 38.03 0 38.03 0/1
chr1 20853195 rs476622 C A . PASS 0.0666000 0.1052000 0.0010000 0.2008000 0.0501000 0.0825000 37.0 70.0 14 88.32 28.57 28.57 0 28.57 0/1
chr1 20940258 rs488991 T A . PASS 0.9085000 0.9942000 1.0000000 0.9990000 1.0000000 0.9748000 37.0 68.75 16 628.69 0.00 100.00 0 100.00 1/1
chr1 20945064 rs72650823 G A . PASS 0.0000000 0.0014000 0.0000000 0.0010000 0.0000000 0.0003994 36.71 70.0 97 1000.00 5.94 43.30 0 43.30 0/1
chr1 20960230 rs45530340 C T . PASS 0.0530000 0.1571000 0.1270000 0.1938000 0.1452000 0.1286000 36.54 69.81 105 1000.00 0.00 100.00 0 100.00 1/1
chr1 20964328 rs2298298 A G . PASS 0.7405000 0.8026000 0.8165000 0.8976000 0.8732000 0.8219000 35.05 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 20971911 rs56125389 G C . PASS 0.0061000 0.1412000 0.1260000 0.1829000 0.1483000 0.1122000 37.0 70.0 11 419.85 0.00 100.00 0 100.00 1/1
chr1 20971980 . C CAAAA . PASS . . . . . . 37.0 70.0 19 645.26 13.53 36.84 0 94.74 0/1
chr1 20971980 rs67160805,rs55946432 C CAAA . PASS . . . . . . 36.67 70.0 19 645.26 15.04 36.84 0 94.74 0/1
chr1 20972048 rs3131713 G A . PASS 0.7352000 0.8026000 0.8145000 0.8956000 0.8783000 0.8207000 36.08 70.0 78 1000.00 0.00 100.00 0 100.00 1/1
chr1 20977221 rs686658 A T . PASS 0.7844000 0.8112000 0.8165000 0.8917000 0.8783000 0.8345000 36.48 70.0 23 909.07 0.00 100.00 0 100.00 1/1
chr1 20978832 rs6893 T C . PASS 0.7421000 0.8040000 0.8274000 0.8936000 0.8783000 0.8249000 36.71 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 20979307 rs11428148 G GT . PASS 0.4781000 0.6095000 0.4206000 0.6054000 0.4356000 0.5020000 36.41 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 20987873 rs537816 G C . PASS 0.9017000 0.9942000 1.0000000 0.9990000 1.0000000 0.9730000 37.0 70.0 68 1000.00 0.00 100.00 0 100.00 1/1
chr1 20991273 rs56070322 G A . PASS 0.0522000 0.1556000 0.1270000 0.1879000 0.1411000 0.1262000 35.6 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 20992819 rs631357 G C . PASS 0.7572000 0.7464000 0.5536000 0.8241000 0.6360000 0.7045000 36.76 70.0 100 1000.00 0.00 100.00 0 100.00 1/1
chr1 20992933 rs573268 G C . PASS 0.9017000 0.9942000 1.0000000 0.9990000 1.0000000 0.9730000 36.4 69.0 20 783.76 0.00 100.00 0 100.00 1/1
chr1 20996486 rs67188527 GA G . PASS 0.3759000 0.6499000 0.5942000 0.5706000 0.5072000 0.5226000 32.62 70.0 30 997.39 3.91 96.67 0 96.67 1/1
chr1 20996555 rs1125090 T C . PASS 0.7179000 0.9553000 0.7946000 0.9920000 0.8783000 0.8526000 35.8 70.0 20 775.90 0.00 100.00 0 100.00 1/1
chr1 20996557 rs1125089 C T . PASS 0.7179000 0.9553000 0.7946000 0.9920000 0.8783000 0.8526000 36.4 70.0 20 787.91 0.00 100.00 0 100.00 1/1
chr1 21012563 rs72650870 C T . PASS 0.0136000 0.0159000 0.1032000 0.0169000 0.0123000 0.0323000 36.04 69.6 87 1000.00 5.15 57.47 0 57.47 0/1
chr1 21016838 . T G . PASS . . . . . . 35.91 70.0 39 293.47 117.95 28.21 0 28.21 0/1
chr1 21024901 rs522496 C T . PASS 0.4455000 0.7190000 0.6498000 0.6869000 0.5675000 0.5968000 37.0 70.0 64 484.99 26.29 26.56 0 26.56 0/1
chr1 21044219 rs601392 A C . PASS 0.9887000 0.8040000 0.9940000 0.8390000 0.9407000 0.9247000 36.45 70.0 43 740.89 6.55 51.16 0 51.16 0/1
chr1 21050958 rs592060 C T . PASS 0.9849000 0.7622000 0.9802000 0.7714000 0.8282000 0.8796000 36.62 70.0 135 1000.00 0.58 47.41 0 47.41 0/1
chr1 21091861 rs1985278 G T . PASS 0.2179000 0.3876000 0.1091000 0.3638000 0.2873000 0.2624000 36.38 69.49 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 21167404 rs2230573 A G . PASS 0.7769000 0.9755000 1.0000000 1.0000000 1.0000000 0.9377000 36.51 70.0 97 1000.00 0.00 100.00 0 100.00 1/1
chr1 21175855 rs7525082 C A . PASS 0.7753000 0.9755000 1.0000000 1.0000000 1.0000000 0.9373000 37.0 69.0 20 795.78 0.00 100.00 0 100.00 1/1
chr1 21179969 rs7542882 G A . PASS 0.7753000 0.9755000 1.0000000 1.0000000 1.0000000 0.9373000 35.8 70.0 10 370.22 0.00 100.00 0 100.00 1/1
chr1 21180181 rs2305463 C T . PASS 0.3714000 0.5677000 0.8313000 0.5477000 0.6074000 0.5727000 37.0 70.0 24 967.01 0.00 100.00 0 100.00 1/1
chr1 21188703 rs10916885 A T . PASS 0.3714000 0.5677000 0.8313000 0.5477000 0.6227000 0.5757000 37.0 70.0 55 1000.00 0.00 100.00 0 100.00 1/1
chr1 21194510 rs2167811 A G . PASS 0.5431000 0.6455000 0.9563000 0.6183000 0.7423000 0.6945000 36.57 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 21194583 . C CTTTTTTT . PASS . . . . . . 35.67 70.0 51 1000.00 0.98 23.53 0 100.00 0/1
chr1 21194583 . C CTTTTTTTT . PASS . . . . . . 36.23 70.0 51 1000.00 29.02 29.41 0 100.00 0/1
chr1 21671943 rs2072654 T G . PASS 0.8109000 0.4928000 0.4167000 0.5616000 0.6759000 0.6110000 35.5 70.0 50 779.34 17.00 48.00 0 48.00 0/1
chr1 21672185 rs7540855 A T . PASS 0.6876000 0.4164000 0.4167000 0.4563000 0.5879000 0.5296000 36.82 70.0 121 1000.00 15.36 53.72 0 53.72 0/1
chr1 21737954 rs4061698 T C . PASS 0.0076000 0.1095000 0.0804000 0.0726000 0.1677000 0.0807000 36.29 69.76 36 557.26 10.78 47.22 0 47.22 0/1
chr1 21738020 rs2316499 A G . PASS 0.5613000 0.7118000 0.7619000 0.7893000 0.5204000 0.6603000 37.0 68.71 58 1000.00 3.94 60.34 0 60.34 0/1
chr1 21739651 rs72657187 A G . PASS 0.0000000 0.0000000 0.0000000 0.0040000 0.0010000 0.0009984 37.0 69.8 11 143.27 7.27 45.45 0 45.45 0/1
chr1 21750970 rs149361209 T A . PASS . . . . . . 37.0 46.11 12 303.20 0.00 75.00 0 75.00 0/1
chr1 21751068 rs71512975 C G . PASS 0.6014000 0.9424000 0.9911000 0.9940000 0.9775000 0.8794000 37.0 45.91 23 921.09 0.00 100.00 0 100.00 1/1
chr1 21751116 rs200628132 G C . PASS . . . . . . 37.0 48.3 37 269.71 2.70 27.03 0 27.03 0/1
chr1 21751142 rs150916531 A G . PASS . . . . . . 36.61 49.26 41 1000.00 4.09 75.61 0 75.61 0/1
chr1 21751214 rs72476501 G A . PASS . . . . . . 35.2 53.15 37 655.54 1.08 54.05 0 54.05 0/1
chr1 21754981 rs148590544 C G . PASS 0.0250000 0.1066000 0.0724000 0.0726000 0.1677000 0.0833000 36.5 62.29 46 815.40 15.22 52.17 0 52.17 0/1
chr1 21754996 rs12024079 C T . PASS 0.5416000 0.9597000 1.0000000 0.9980000 1.0000000 0.8730000 36.03 60.38 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 21755013 rs201191572 C T . PASS 0.0250000 0.1066000 0.0724000 0.0726000 0.1677000 0.0833000 37.0 62.23 30 420.25 27.18 43.33 0 43.33 0/1
chr1 21755055 rs12024104 C A . PASS 0.3737000 0.7896000 0.8373000 0.8529000 0.6922000 0.6831000 36.37 52.05 19 741.99 0.00 100.00 0 100.00 1/1
chr1 21755135 rs41302024 T G . PASS 0.2042000 0.5346000 0.7560000 0.5328000 0.4540000 0.4758000 35.5 61.0 21 544.48 0.60 76.19 0 76.19 0/1
chr1 21755188 rs41306571 C G . PASS 0.0023000 0.0159000 0.0000000 0.0199000 0.0041000 0.0075879 37.0 61.08 40 929.01 19.23 65.00 0 65.00 0/1
chr1 21755345 rs41302023 T C . PASS 0.0681000 0.1772000 0.0823000 0.2217000 0.1973000 0.1422000 36.6 68.79 159 1000.00 7.08 57.23 0 57.23 0/1
chr1 21755347 rs41310392 C T . PASS 0.2050000 0.5360000 0.7560000 0.5318000 0.4540000 0.4760000 36.29 68.46 160 1000.00 8.46 42.50 0 42.50 0/1
chr1 21755453 rs3856177 G A . PASS . . . . . . 36.61 64.45 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 21755539 rs3855556 C A . PASS 0.3896000 0.7896000 0.8383000 0.8559000 0.6912000 0.6879000 33.4 65.5 18 290.88 26.67 55.56 0 55.56 0/1
chr1 21755756 rs56343055 G C . PASS 0.3903000 0.7896000 0.8393000 0.8559000 0.6922000 0.6885000 36.54 67.42 79 1000.00 0.00 100.00 0 100.00 1/1
chr1 21755867 rs7522332 A G . PASS 0.3903000 0.7896000 0.8393000 0.8559000 0.6922000 0.6885000 36.45 62.86 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 21755906 rs3738922 G A . PASS 0.3903000 0.7896000 0.8393000 0.8559000 0.6922000 0.6885000 37.0 62.09 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 21756008 rs3894725 G T . PASS 0.3903000 0.7896000 0.8403000 0.8559000 0.6922000 0.6887000 36.39 68.36 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 21756069 rs7532750 G A . PASS 0.3903000 0.7896000 0.8403000 0.8559000 0.6922000 0.6887000 35.76 68.41 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 21761072 rs118111934 T C . PASS 0.0076000 0.0893000 0.0794000 0.0239000 0.0798000 0.0507000 36.0 70.0 30 366.46 0.00 40.00 0 40.00 0/1
chr1 21761864 rs72657197 C T . PASS 0.0015000 0.0893000 0.0794000 0.0239000 0.0798000 0.0491000 37.0 69.75 34 700.60 10.00 58.82 0 58.82 0/1
chr1 21763132 rs10916990 T A . PASS 0.4546000 0.5865000 0.5843000 0.5517000 0.4959000 0.5266000 37.0 70.0 13 216.64 4.40 53.85 0 53.85 0/1
chr1 21786176 rs4654749 A G . PASS 0.9297000 0.9971000 1.0000000 1.0000000 1.0000000 0.9810000 37.0 69.81 16 632.84 0.00 100.00 0 100.00 1/1
chr1 21795388 rs1827293 A G . PASS 0.1445000 0.4755000 0.5804000 0.5417000 0.4826000 0.4239000 37.0 70.0 40 431.93 9.29 35.00 0 35.00 0/1
chr1 21795432 rs35175190 G GA . PASS 0.2950000 0.2839000 0.2321000 0.1909000 0.4121000 0.2827000 35.91 70.0 31 670.02 3.23 64.52 0 64.52 0/1
chr1 21797996 rs2004380 G A . PASS 0.1437000 0.4755000 0.5804000 0.5427000 0.4826000 0.4239000 37.0 70.0 14 92.47 57.14 28.57 0 28.57 0/1
chr1 21799489 rs1971327 T C . PASS 0.5371000 0.7925000 0.8125000 0.7724000 0.9182000 0.7496000 36.29 70.0 17 662.60 0.00 100.00 0 100.00 1/1
chr1 21799823 rs1971328 A G . PASS 0.4380000 0.7594000 0.8125000 0.7336000 0.8947000 0.7065000 37.0 69.8 10 382.23 0.00 100.00 0 100.00 1/1
chr1 21799924 rs80145424 G A . PASS 0.0076000 0.0893000 0.0813000 0.0249000 0.0798000 0.0513000 35.91 69.82 44 730.02 4.55 50.00 0 50.00 0/1
chr1 21801346 rs7531217 G A . PASS 0.5371000 0.7925000 0.8125000 0.7724000 0.9182000 0.7496000 36.44 69.61 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 21804815 rs7535654 T G . PASS 0.7965000 0.9726000 1.0000000 0.9980000 1.0000000 0.9421000 36.61 69.97 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 21805978 rs4654948 G A . PASS 0.5363000 0.7925000 0.8125000 0.7714000 0.9182000 0.7492000 36.31 69.96 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 21809850 rs199951062 T C . PASS 0.0166000 0.1023000 0.0804000 0.0288000 0.0838000 0.0569000 37.0 59.38 17 459.37 1.81 76.47 0 76.47 0/1
chr1 21809876 rs151217608 C G . PASS . . . . . . 37.0 60.57 17 204.60 25.21 41.18 0 41.18 0/1
chr1 21887290 rs1767430 C A . PASS 0.2428000 0.2666000 0.1359000 0.4235000 0.2485000 0.2620000 35.8 70.0 20 308.87 0.00 50.00 0 50.00 0/1
chr1 21889635 rs1780316 T C . PASS 0.8495000 0.9539000 0.9821000 0.9374000 0.9581000 0.9295000 36.57 69.76 83 1000.00 0.00 100.00 0 100.00 1/1
chr1 21890464 rs1767428 A G . PASS 0.9508000 0.9957000 1.0000000 1.0000000 1.0000000 0.9864000 36.52 70.0 25 996.76 0.00 100.00 0 100.00 1/1
chr1 21896767 rs1256328 C T . PASS 0.0900000 0.1210000 0.1845000 0.1809000 0.2127000 0.1556000 37.0 70.0 31 667.86 6.11 61.29 0 61.29 0/1
chr1 21902436 rs61778393 G T . PASS 0.0030000 0.0072000 0.0000000 0.0358000 0.0051000 0.0099840 36.5 70.0 62 767.24 11.02 38.71 0 38.71 0/1
chr1 21904131 rs34605986 T C . PASS 0.0287000 0.0576000 0.0030000 0.1103000 0.1718000 0.0719000 36.78 69.63 109 1000.00 2.72 49.54 0 49.54 0/1
chr1 21904206 rs1697405 C T . PASS 0.2405000 0.3833000 0.3135000 0.3738000 0.4192000 0.3367000 36.43 70.0 37 721.33 5.92 56.76 0 56.76 0/1
chr1 21904267 rs1697406 A G . PASS 0.8555000 0.9078000 0.8006000 0.8638000 0.9315000 0.8682000 35.91 70.0 11 411.98 0.00 100.00 0 100.00 1/1
chr1 21925108 rs2794278 T C . PASS 0.9312000 0.9366000 0.9812000 0.8907000 0.9274000 0.9331000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 21928344 rs2275366 C G . PASS 0.1445000 0.5605000 0.5853000 0.3509000 0.4254000 0.3872000 36.65 70.0 64 1000.00 1.65 53.12 0 53.12 0/1
chr1 21929260 rs829368 A G . PASS 0.9244000 0.9438000 0.9802000 0.8917000 0.9274000 0.9323000 36.71 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 21932530 rs1767443 C A . PASS 0.7337000 0.8487000 0.9484000 0.7455000 0.7393000 0.7963000 36.61 70.0 56 1000.00 10.94 55.36 0 55.36 0/1
chr1 21934667 rs829371 G A . PASS 0.4675000 0.3401000 0.4355000 0.5020000 0.4581000 0.4485000 36.35 69.64 119 1000.00 13.26 46.22 0 46.22 0/1
chr1 21934693 rs72660316 T C . PASS 0.0900000 0.0836000 0.0327000 0.1441000 0.1881000 0.1076000 36.25 70.0 156 1000.00 3.91 51.28 0 51.28 0/1
chr1 21935433 rs861212 G T . PASS 0.2209000 0.5101000 0.6518000 0.4533000 0.5297000 0.4547000 37.0 70.0 87 1000.00 0.46 57.47 0 57.47 0/1
chr1 21935467 rs12130950 G A . PASS 0.1142000 0.0836000 0.0347000 0.1412000 0.1881000 0.1138000 37.0 70.0 58 878.98 10.88 44.83 0 44.83 0/1
chr1 21938375 rs2275364 T G . PASS 0.3343000 0.2478000 0.1310000 0.3579000 0.2311000 0.2660000 35.91 70.0 40 737.91 14.09 55.00 0 55.00 0/1
chr1 21939741 rs1256282 G C . PASS 0.4085000 0.6484000 0.5357000 0.4264000 0.4601000 0.4810000 37.0 70.0 19 323.90 6.32 52.63 0 52.63 0/1
chr1 21940555 rs2275363 C T . PASS 0.3646000 0.2781000 0.4196000 0.4443000 0.4325000 0.3930000 36.61 69.68 114 1000.00 6.11 54.39 0 54.39 0/1
chr1 21943820 rs2275360 G A . PASS 0.1884000 0.5072000 0.5298000 0.2495000 0.2526000 0.3261000 36.33 70.0 106 1000.00 9.36 50.94 0 50.94 0/1
chr1 21944352 rs748488 A G . PASS 0.2572000 0.1960000 0.1052000 0.2893000 0.2055000 0.2145000 37.0 70.0 37 900.42 0.86 67.57 0 67.57 0/1
chr1 21945530 rs77539762 C T . PASS 0.1452000 0.0303000 0.0000000 0.0378000 0.0194000 0.0539000 37.0 70.0 106 1000.00 9.91 45.28 0 45.28 0/1
chr1 21946415 rs1681255 G A . PASS 0.5885000 0.8646000 0.9802000 0.8012000 0.8896000 0.8071000 37.0 70.0 17 250.52 35.29 47.06 0 47.06 0/1
chr1 21996848 rs829398 A G . PASS 0.4962000 0.4914000 0.4494000 0.5944000 0.6564000 0.5371000 36.71 70.0 76 1000.00 7.32 53.95 0 53.95 0/1
chr1 22013771 rs10493008 G A . PASS 0.3374000 0.6657000 0.6359000 0.4115000 0.4427000 0.4784000 35.84 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 22030121 rs55633304 A G . PASS 0.0590000 0.0591000 0.0069000 0.1282000 0.0542000 0.0615000 35.8 70.0 58 1000.00 3.60 79.31 0 94.83 0/1
chr1 22030122 . A G . PASS . . . . . . 37.0 70.0 59 165.89 26.37 15.25 0 15.25 0/1
chr1 22050649 rs2275668 C A . PASS 0.5968000 0.8213000 0.6587000 0.7455000 0.6881000 0.6881000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 22063149 rs10753517 G A . PASS 0.3873000 0.7421000 0.6567000 0.6252000 0.6309000 0.5861000 36.48 70.0 23 913.22 0.00 100.00 0 100.00 1/1
chr1 22082923 rs10458384 G A . PASS 0.5779000 0.8141000 0.6657000 0.7147000 0.6646000 0.6727000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 22109370 rs10917042 G A . PASS 0.0280000 0.5274000 0.5893000 0.2197000 0.1973000 0.2817000 36.44 70.0 108 1000.00 0.00 100.00 0 100.00 1/1
chr1 22141206 rs10917051 A C . PASS 0.4697000 0.7695000 0.6319000 0.6988000 0.5869000 0.6128000 36.25 69.58 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 22168968 rs66533518 G A . PASS 0.2231000 0.3184000 0.1915000 0.1779000 0.1616000 0.2089000 35.2 70.0 20 763.89 0.00 100.00 0 100.00 1/1
chr1 22169134 rs72662421 G A . PASS 0.0038000 0.1844000 0.0020000 0.1153000 0.0593000 0.0617000 35.8 70.0 20 775.90 0.00 100.00 0 100.00 1/1
chr1 22175031 rs6426726 G T . PASS 0.2405000 0.3300000 0.1915000 0.1958000 0.1636000 0.2191000 35.15 70.0 26 998.35 0.00 100.00 0 100.00 1/1
chr1 22186234 rs10917056 A G . PASS 0.7716000 0.9798000 0.9712000 0.9940000 0.9969000 0.9293000 36.68 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 22191454 rs897471 G A . PASS 0.5893000 0.7810000 0.8889000 0.7256000 0.5276000 0.6915000 36.47 69.85 135 1000.00 0.00 100.00 0 100.00 1/1
chr1 22199081 rs2501266 A T . PASS 0.9266000 0.9942000 1.0000000 1.0000000 1.0000000 0.9798000 36.67 70.0 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 22199821 rs2454290 G A . PASS 0.4198000 0.8674000 0.9722000 0.8618000 0.7280000 0.7420000 36.22 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 22200835 rs2445135 C G . PASS 0.9206000 0.9942000 1.0000000 1.0000000 1.0000000 0.9782000 37.0 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 22201331 rs2290494 C T . PASS 0.1452000 0.4164000 0.5972000 0.2107000 0.2127000 0.3001000 36.2 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 22202109 rs2501265 C T . PASS 0.7935000 0.9784000 1.0000000 1.0000000 0.9990000 0.9423000 36.67 69.44 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 22204630 rs7513608 G A . PASS 0.1664000 0.4135000 0.6052000 0.2107000 0.2270000 0.3097000 35.93 69.56 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 22205408 rs2454294 T C . PASS 0.9039000 0.9928000 1.0000000 1.0000000 1.0000000 0.9736000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 22205466 rs2454293 T C . PASS 0.8525000 0.9899000 1.0000000 1.0000000 0.9990000 0.9595000 36.59 70.0 117 1000.00 0.00 100.00 0 100.00 1/1
chr1 22206649 rs989994 T C . PASS 0.7466000 0.9784000 1.0000000 1.0000000 0.9990000 0.9299000 36.76 70.0 102 1000.00 0.00 100.00 0 100.00 1/1
chr1 22206942 rs1874793 G A . PASS 0.7466000 0.9784000 1.0000000 1.0000000 0.9990000 0.9299000 36.89 70.0 113 1000.00 0.00 100.00 0 100.00 1/1
chr1 22207235 rs1874792 T C . PASS 0.9039000 0.9928000 1.0000000 1.0000000 1.0000000 0.9736000 36.76 70.0 152 1000.00 0.00 100.00 0 100.00 1/1
chr1 22207804 rs60267433,rs139046040 ACCCAGGGTGGCAG A . PASS 0.8533000 0.9899000 1.0000000 1.0000000 0.9990000 0.9597000 35.63 69.76 83 1000.00 0.00 100.00 0 100.00 1/1
chr1 22208030 rs921847 C T . PASS 0.7632000 0.9769000 1.0000000 0.9891000 0.9683000 0.9259000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 22211217 rs2290493 G A . PASS 0.1672000 0.4135000 0.6062000 0.2097000 0.2311000 0.3107000 36.74 70.0 94 1000.00 0.00 100.00 0 100.00 1/1
chr1 22211222 rs4654994 T C . PASS 0.8260000 0.9092000 0.9583000 0.9254000 0.8885000 0.8964000 37.0 70.0 99 1000.00 0.00 100.00 0 100.00 1/1
chr1 22214127 rs2229478 A G . PASS 0.7065000 0.5793000 0.6498000 0.3191000 0.3824000 0.5363000 37.0 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 22214645 rs3767140 C A . PASS 0.2867000 0.4251000 0.6062000 0.2117000 0.2198000 0.3421000 36.43 70.0 21 825.53 0.00 100.00 0 100.00 1/1
chr1 22217108 rs2501260 G A . PASS 0.8139000 0.9798000 1.0000000 1.0000000 1.0000000 0.9481000 36.73 69.78 90 1000.00 0.00 100.00 0 100.00 1/1
chr1 22263551 rs71514204 G A . PASS 0.0129000 0.3718000 0.3938000 0.2157000 0.2382000 0.2240000 36.37 70.0 19 746.14 0.00 100.00 0 100.00 1/1
chr1 22303702 rs4415533 C A . PASS 0.4115000 0.5288000 0.6101000 0.3181000 0.3589000 0.4387000 35.71 69.36 112 1000.00 0.00 100.00 0 100.00 1/1
chr1 22307252 rs12401939 G A . PASS 0.0121000 0.4092000 0.3810000 0.2068000 0.2096000 0.2191000 37.0 58.14 22 883.47 0.00 100.00 0 100.00 1/1
chr1 22307340 rs7528228 C T . PASS 0.7110000 0.9352000 0.7550000 0.9722000 0.9458000 0.8492000 36.51 56.78 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 22307358 rs7528300 C G . PASS 0.7042000 0.9366000 0.7540000 0.9722000 0.9468000 0.8476000 36.19 61.31 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 22307538 rs7528405 C T . PASS 0.8442000 0.9625000 0.7550000 0.9920000 0.9519000 0.8934000 36.41 70.0 82 1000.00 0.00 100.00 0 100.00 1/1
chr1 22307743 rs6689384 T C . PASS 0.7118000 0.9366000 0.7470000 0.9722000 0.9427000 0.8474000 35.91 69.36 11 411.98 0.00 100.00 0 100.00 1/1
chr1 22310139 rs10733031 T G . PASS . . . . . . 37.0 66.8 15 586.92 0.00 100.00 0 100.00 1/1
chr1 22310145 rs10733032 C T . PASS 0.7095000 0.9366000 0.7550000 0.9672000 0.9448000 0.8478000 37.0 64.06 18 716.39 0.00 100.00 0 100.00 1/1
chr1 22310262 rs10733033 G C . PASS 0.7958000 0.9539000 0.7550000 0.9920000 0.9519000 0.8794000 36.8 63.43 122 1000.00 0.00 100.00 0 100.00 1/1
chr1 22310411 rs28468423 A G . PASS 0.7057000 0.8689000 0.7520000 0.8748000 0.9131000 0.8121000 35.11 60.0 19 722.12 0.00 100.00 0 100.00 1/1
chr1 22310413 rs7549398 A G . PASS 0.5030000 0.8329000 0.7252000 0.8390000 0.9049000 0.7394000 36.37 60.0 19 746.14 0.00 100.00 0 100.00 1/1
chr1 22310662 rs6426735 G T . PASS 0.7095000 0.9251000 0.7540000 0.9423000 0.9417000 0.8405000 35.0 69.94 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 22310674 rs7538207 C T . PASS 0.7095000 0.9366000 0.7550000 0.9722000 0.9468000 0.8492000 36.26 69.95 65 1000.00 0.00 100.00 0 100.00 1/1
chr1 22310725 rs3820287 G C . PASS . . . . . . 36.11 69.72 121 1000.00 0.00 100.00 0 100.00 1/1
chr1 22310824 rs1803531 T C . PASS 0.8434000 0.9625000 0.7550000 0.9920000 0.9519000 0.8932000 36.79 66.1 168 1000.00 0.00 100.00 0 100.00 1/1
chr1 22310933 rs12130164 C G . PASS 0.6732000 0.9193000 0.7530000 0.9423000 0.9407000 0.8297000 36.54 58.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 22313161 rs1803530 T C . PASS 0.7920000 0.9496000 0.7629000 0.9920000 0.9591000 0.8808000 36.74 69.03 94 1000.00 0.00 100.00 0 100.00 1/1
chr1 22315662 rs12082371 C T . PASS 0.3434000 0.3256000 0.3304000 0.1869000 0.1953000 0.2780000 37.0 49.56 19 286.27 0.00 47.37 0 47.37 0/1
chr1 22315666 rs55665598 G A . PASS 0.0091000 0.2896000 0.3125000 0.1571000 0.1902000 0.1741000 35.91 50.82 22 348.78 9.09 50.00 0 50.00 0/1
chr1 22315710 rs12071902 G A . PASS . . . . . . 37.0 49.77 28 426.26 1.65 46.43 0 46.43 0/1
chr1 22315738 rs4655006 C T . PASS . . . . . . 37.0 52.42 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 22328279 rs12751986 C T . PASS 0.0212000 0.4107000 0.3978000 0.2107000 0.2270000 0.2292000 36.23 69.45 109 1000.00 0.00 100.00 0 100.00 1/1
chr1 22329407 rs12756442 G C . PASS 0.1936000 0.4611000 0.5109000 0.2406000 0.2883000 0.3225000 37.0 67.27 11 419.85 0.00 100.00 0 100.00 1/1
chr1 22329645 rs4543768 T C . PASS 0.7005000 0.5605000 0.6389000 0.3101000 0.3753000 0.5268000 37.0 62.71 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 22331875 rs77134266 G A . PASS . . . . . . 37.0 65.25 38 354.39 24.56 31.58 0 31.58 0/1
chr1 22332008 rs56968853 T C . PASS . . . . . . 35.65 62.92 263 1000.00 4.16 23.57 0 23.57 0/1
chr1 22334117 rs35519693 C G . PASS 0.1051000 0.4251000 0.4127000 0.2376000 0.2996000 0.2760000 37.0 59.28 92 1000.00 0.00 100.00 0 100.00 1/1
chr1 22334195 rs11585960 G A . PASS 0.2625000 0.1225000 0.0804000 0.0954000 0.1370000 0.1484000 37.0 44.0 12 56.72 0.00 25.00 0 25.00 0/1
chr1 22336120 rs4344303 T C . PASS 0.2398000 0.4078000 0.4008000 0.1879000 0.2178000 0.2808000 36.68 69.22 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 22336277 rs3820285 C G . PASS 0.9047000 0.9020000 0.7431000 0.9771000 0.9530000 0.8958000 36.48 69.95 142 1000.00 2.28 97.89 0 97.89 1/1
chr1 22336305 rs9187 C T . PASS 0.2315000 0.4107000 0.4018000 0.2207000 0.2219000 0.2865000 36.62 69.78 131 1000.00 3.46 96.95 0 96.95 1/1
chr1 22336308 rs12908 G A . PASS 0.2307000 0.4078000 0.3998000 0.2207000 0.2219000 0.2855000 36.52 69.77 131 1000.00 4.51 94.66 0 94.66 1/1
chr1 22447645 rs41420150 C CTG . PASS 0.7897000 0.8660000 0.9990000 0.7624000 0.8855000 0.8556000 36.04 70.0 55 818.65 2.91 45.45 0 45.45 0/1
chr1 22652501 rs10917214 A G . PASS 0.5053000 0.4078000 0.3611000 0.5328000 0.6115000 0.4890000 36.68 70.0 137 1000.00 2.78 54.01 0 54.01 0/1
chr1 22832743 rs209732 A T . PASS 0.9357000 0.7997000 0.8929000 0.6272000 0.6943000 0.7991000 37.0 70.0 39 806.71 2.90 58.97 0 58.97 0/1
chr1 22835677 rs209729 A G . PASS 0.9395000 0.8429000 0.8929000 0.7167000 0.6861000 0.8225000 36.33 70.0 69 1000.00 18.36 52.17 0 52.17 0/1
chr1 22837944 rs2073168 T C . PASS 0.1710000 0.2291000 0.4692000 0.3996000 0.4172000 0.3331000 37.0 70.0 14 217.78 14.29 50.00 0 50.00 0/1
chr1 22846709 rs209720 G A . PASS 1.0000000 0.9971000 1.0000000 0.9940000 1.0000000 0.9984000 36.53 70.0 129 1000.00 0.00 100.00 0 100.00 1/1
chr1 22849003 rs998978 A C . PASS 0.1225000 0.2219000 0.4692000 0.3926000 0.4182000 0.3181000 37.0 70.0 35 609.90 14.60 51.43 0 51.43 0/1
chr1 22852715 rs881646 G C . PASS 0.1225000 0.2205000 0.4692000 0.3936000 0.4182000 0.3181000 36.08 69.23 67 823.73 7.46 38.81 0 38.81 0/1
chr1 22912865 rs537426 A G . PASS 0.6944000 0.3790000 0.2708000 0.3678000 0.5501000 0.4716000 36.4 70.0 20 787.91 0.00 100.00 0 100.00 1/1
chr1 22913153 rs638058 T C . PASS 0.7284000 0.3818000 0.2937000 0.3658000 0.5501000 0.4852000 36.54 70.0 105 1000.00 0.00 100.00 0 100.00 1/1
chr1 22915753 rs606002 T C . PASS 0.7126000 0.3761000 0.2907000 0.3777000 0.5491000 0.4818000 36.46 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 22915967 rs11584845 C G . PASS 0.0053000 0.0375000 0.0000000 0.0875000 0.0378000 0.0315000 37.0 70.0 11 419.85 0.00 100.00 0 100.00 1/1
chr1 22920094 rs56157621 C G . PASS 0.0098000 0.0216000 0.0179000 0.0408000 0.0542000 0.0280000 36.59 70.0 117 1000.00 0.00 100.00 0 100.00 1/1
chr1 22922560 rs209691 G A . PASS 0.8011000 0.5331000 0.2887000 0.4264000 0.6084000 0.5479000 36.5 70.0 24 954.99 0.00 100.00 0 100.00 1/1
chr1 22923732 rs68055833 CCCAGGCCCAGG C . PASS 0.0000000 0.0216000 0.0000000 0.0408000 0.0429000 0.0195690 34.79 70.0 14 508.72 0.00 100.00 0 100.00 1/1
chr1 22923785 rs11582356 G A . PASS 0.0076000 0.0216000 0.0000000 0.0408000 0.0429000 0.0216000 35.15 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 22924124 rs61767315 G A . PASS 0.0000000 0.0216000 0.0000000 0.0408000 0.0429000 0.0195690 36.62 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 22924364 rs72651347 G A . PASS 0.0159000 0.0202000 0.0179000 0.0388000 0.0440000 0.0270000 36.47 70.0 91 1000.00 0.00 100.00 0 100.00 1/1
chr1 22924418 rs12030727 T C . PASS 0.2776000 0.1628000 0.1200000 0.1600000 0.2628000 0.2035000 37.0 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 22925292 rs664340 C G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 37.0 70.0 24 962.86 0.00 100.00 0 100.00 1/1
chr1 22925613 rs663002 C A . PASS 0.3154000 0.2608000 0.2153000 0.2416000 0.2423000 0.2586000 36.82 70.0 65 1000.00 0.00 100.00 0 100.00 1/1
chr1 22927241 rs72651352 G A . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 69.68 133 1000.00 1.00 47.37 0 47.37 0/1
chr1 22927314 rs209702 A G . PASS 0.7625000 0.5331000 0.3552000 0.4264000 0.5092000 0.5317000 36.51 69.59 98 1000.00 0.00 100.00 0 100.00 1/1
chr1 22927326 rs209701 T G . PASS 0.7383000 0.4914000 0.2708000 0.3469000 0.3937000 0.4641000 36.75 70.0 97 1000.00 0.00 100.00 0 100.00 1/1
chr1 22928265 rs209700 A G . PASS 0.9675000 0.6268000 0.3631000 0.4314000 0.6401000 0.6270000 36.0 70.0 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 22970828 rs666656 G T . PASS 0.9614000 0.5375000 0.6806000 0.4672000 0.6002000 0.6763000 35.74 67.89 19 729.98 0.00 100.00 0 100.00 1/1
chr1 22974297 rs9434 C A . PASS 0.8896000 0.4957000 0.6220000 0.3827000 0.4202000 0.5877000 36.71 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 22985839 rs140338008 AGATG A . PASS . . . . . . 37.0 70.0 11 259.02 4.04 81.82 0 81.82 0/1
chr1 22987958 rs10580 A G . PASS 0.9985000 0.9870000 1.0000000 0.9751000 0.9928000 0.9914000 34.6 70.0 10 358.20 0.00 100.00 0 100.00 1/1
chr1 22989166 rs292011 T C . PASS 0.6884000 0.5519000 0.4514000 0.4235000 0.4417000 0.5204000 36.57 70.0 141 1000.00 0.00 100.00 0 100.00 1/1
chr1 23208925 rs2229872 G A . PASS 0.1989000 0.1585000 0.4901000 0.0755000 0.1339000 0.2145000 36.33 69.44 74 1000.00 9.01 48.65 0 48.65 0/1
chr1 23219493 rs309472 T C . PASS 0.9992000 0.9957000 1.0000000 0.9950000 1.0000000 0.9982000 36.26 70.0 113 1000.00 0.00 100.00 0 100.00 1/1
chr1 23223116 rs309466 C T . PASS 0.3275000 0.5043000 0.2520000 0.4970000 0.3988000 0.3848000 37.0 70.0 11 143.27 0.00 45.45 0 45.45 0/1
chr1 23236826 rs309497 C T . PASS 0.7905000 0.5346000 0.2659000 0.5030000 0.3875000 0.5130000 37.0 70.0 36 736.35 0.00 58.33 0 58.33 0/1
chr1 23281917 rs72655581 G T . PASS 0.0000000 0.0014000 0.0010000 0.0020000 0.0010000 0.0009984 36.25 70.0 58 1000.00 6.90 55.17 0 55.17 0/1
chr1 23289568 rs10799777 T C . PASS 0.1967000 0.4308000 0.5188000 0.6740000 0.4499000 0.4393000 37.0 70.0 43 673.51 12.33 46.51 0 46.51 0/1
chr1 23310485 rs6426779 T C . PASS 0.3086000 0.3746000 0.5516000 0.4920000 0.3190000 0.4056000 36.14 70.0 72 896.36 3.97 38.89 0 38.89 0/1
chr1 23342193 rs10917344 C G . PASS 0.2995000 0.3746000 0.5516000 0.4911000 0.3231000 0.4038000 35.91 70.0 23 341.62 25.30 47.83 0 47.83 0/1
chr1 23342362 rs681648 A G . PASS 0.8079000 0.6210000 0.8204000 0.8241000 0.5348000 0.7344000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 23380198 rs579785 A G . PASS 0.8487000 0.6254000 0.8056000 0.8270000 0.5665000 0.7496000 36.71 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 23385826 rs79588010 CTT C . PASS 0.2890000 0.2233000 0.2540000 0.3340000 0.2423000 0.2728000 37.0 70.0 12 303.94 0.00 91.67 0 91.67 0/1
chr1 23399932 rs967605 C T . PASS 0.8177000 0.6210000 0.8056000 0.8270000 0.5613000 0.7398000 36.65 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 23418153 rs10799790 C T . PASS 0.8404000 0.6225000 0.8065000 0.8270000 0.5613000 0.7462000 36.1 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 23419261 rs477717 G A . PASS 0.6430000 0.5937000 0.8065000 0.8280000 0.5624000 0.6905000 36.64 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 23419374 rs3765407 G T . PASS 0.5923000 0.5922000 0.8065000 0.8280000 0.5624000 0.6769000 36.22 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 23419383 rs477830 C T . PASS 0.6422000 0.5937000 0.8065000 0.8280000 0.5624000 0.6903000 36.25 70.0 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 23419855 rs1983965 T C . PASS 0.8434000 0.6225000 0.8065000 0.8280000 0.5624000 0.7474000 36.47 70.0 68 1000.00 0.00 100.00 0 100.00 1/1
chr1 23710805 rs605468 A G . PASS 0.7587000 0.9308000 0.9077000 0.9145000 0.7996000 0.8518000 37.0 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 23713952 rs676363 T G . PASS 0.7602000 0.9294000 0.9077000 0.9145000 0.7996000 0.8520000 36.05 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 23720260 rs2486078 T G . PASS 0.9705000 0.8429000 0.8571000 0.9195000 0.8528000 0.8968000 35.56 69.2 25 968.59 0.00 100.00 0 100.00 1/1
chr1 23735241 rs1198423 G T . PASS 0.7579000 0.8674000 0.8829000 0.8767000 0.8620000 0.8425000 36.31 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 23758134 rs1198434 A G . PASS 0.8381000 0.8818000 0.8810000 0.8907000 0.8773000 0.8710000 36.25 70.0 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 23768196 rs72661458 G A . PASS 0.0000000 0.0014000 0.0000000 0.0060000 0.0000000 0.0013978 36.59 70.0 105 1000.00 3.49 56.19 0 56.19 0/1
chr1 23768790 rs72661462 G T . PASS 0.0023000 0.0058000 0.0000000 0.0258000 0.0010000 0.0067891 37.0 70.0 30 624.95 8.89 60.00 0 60.00 0/1
chr1 23782297 rs61778880 C T . PASS 0.0197000 0.0865000 0.0863000 0.1451000 0.0879000 0.0809000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 23885498 rs11574 T C . PASS 0.9894000 0.7392000 0.9692000 0.7575000 0.9192000 0.8904000 36.66 70.0 105 1000.00 0.00 100.00 0 100.00 1/1
chr1 23885599 rs2067053 T C . PASS 0.6566000 0.3473000 0.3403000 0.3370000 0.5429000 0.4637000 36.53 70.0 103 1000.00 0.00 100.00 0 100.00 1/1
chr1 24018277 rs10917413 C G . PASS 0.9213000 0.9957000 0.9960000 0.9990000 0.9959000 0.9768000 37.0 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 24077451 rs2235541 C T . PASS 0.0038000 0.1095000 0.0883000 0.0905000 0.1462000 0.0807000 35.76 70.0 61 959.23 2.49 47.54 0 47.54 0/1
chr1 24083649 rs2076346 T C . PASS 0.0885000 0.2133000 0.5169000 0.2575000 0.4315000 0.2929000 36.66 69.43 66 1000.00 12.99 53.03 0 53.03 0/1
chr1 24106510 rs3831910 A AT . PASS . . . . . . 36.43 70.0 20 772.32 0.00 100.00 0 100.00 1/1
chr1 24119627 rs2232982 C T . PASS 0.0008000 0.0072000 0.0000000 0.0288000 0.0112000 0.0091853 36.16 70.0 94 1000.00 7.77 45.74 0 45.74 0/1
chr1 24122986 rs760941 C T . PASS . . . . . . 35.91 70.0 33 1000.00 5.87 96.97 0 100.00 1/1
chr1 24134721 rs719400 T C . PASS 0.9728000 0.8876000 0.7817000 0.9254000 0.8415000 0.8874000 36.24 69.79 95 1000.00 0.00 100.00 0 100.00 1/1
chr1 24143932 rs2076344 A G . PASS 0.9728000 0.8876000 0.7817000 0.9264000 0.8425000 0.8878000 36.66 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 24200969 rs2229584 T C . PASS 0.7943000 0.6383000 0.5020000 0.5875000 0.6973000 0.6534000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 24200983 rs2229583 C T . PASS 0.8230000 0.6398000 0.5020000 0.5885000 0.6973000 0.6613000 36.33 70.0 18 704.37 0.00 100.00 0 100.00 1/1
chr1 24201094 rs2229581 G C . PASS 0.7943000 0.6383000 0.5020000 0.5875000 0.6973000 0.6534000 37.0 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 24201109 rs2229580 C T . PASS 0.7943000 0.6383000 0.5020000 0.5875000 0.6973000 0.6534000 36.64 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 24201262 rs2502993 A G . PASS 0.7943000 0.6383000 0.5020000 0.5875000 0.6973000 0.6534000 36.62 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 24201357 rs4649124 A G . PASS 0.7943000 0.6383000 0.5020000 0.5875000 0.6973000 0.6534000 36.59 70.0 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 24201448 rs3003336 C T . PASS 0.7943000 0.6383000 0.5020000 0.5875000 0.6973000 0.6534000 36.31 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 24201643 rs2501431 G A . PASS 0.7943000 0.6383000 0.5020000 0.5875000 0.6973000 0.6534000 36.3 70.0 69 1000.00 0.00 100.00 0 100.00 1/1
chr1 24201918 rs35761398 GTT GCC . PASS . . . . . . 36.46 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 24228108 rs4649133 G A . PASS 0.9334000 0.9928000 1.0000000 0.9990000 1.0000000 0.9812000 37.0 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 24228132 rs4649134 G A . PASS 0.9342000 0.9928000 1.0000000 0.9990000 1.0000000 0.9814000 36.25 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 24228206 rs4649135 A G . PASS 0.9440000 0.9942000 1.0000000 0.9990000 1.0000000 0.9842000 36.04 70.0 25 984.75 0.00 100.00 0 100.00 1/1
chr1 24228359 rs4649136 A G . PASS 0.9425000 0.9942000 1.0000000 0.9990000 1.0000000 0.9838000 36.38 68.87 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 24228408 rs4648921 C T . PASS 0.9440000 0.9942000 1.0000000 0.9990000 1.0000000 0.9842000 37.0 69.22 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 24228419 rs4648922 T C . PASS 0.9440000 0.9942000 1.0000000 0.9990000 1.0000000 0.9842000 37.0 68.74 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 24228443 rs4648923 G A . PASS 0.9440000 0.9942000 1.0000000 0.9990000 1.0000000 0.9842000 37.0 69.54 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 24228594 rs6669546 C G . PASS 0.9334000 0.9942000 1.0000000 0.9990000 1.0000000 0.9814000 36.08 70.0 13 491.37 0.00 100.00 0 100.00 1/1
chr1 24228762 rs6662481 G C . PASS 0.9334000 0.9942000 1.0000000 0.9990000 1.0000000 0.9814000 37.0 69.69 13 503.38 0.00 100.00 0 100.00 1/1
chr1 24228863 rs6662584 G A . PASS 0.9334000 0.9942000 1.0000000 0.9990000 1.0000000 0.9814000 35.67 69.78 18 692.36 0.00 100.00 0 100.00 1/1
chr1 24229032 rs6672272 C A . PASS 0.9349000 0.9942000 1.0000000 0.9990000 1.0000000 0.9818000 36.2 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 24229106 rs6677264 A G . PASS 0.9334000 0.9942000 1.0000000 0.9990000 1.0000000 0.9814000 36.75 70.0 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 24229276 rs6680554 T C . PASS 0.6573000 0.9582000 1.0000000 0.9940000 1.0000000 0.9026000 37.0 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 24275433 rs147135061 A G . PASS . . . . . . 37.0 69.44 16 632.84 0.00 100.00 0 100.00 1/1
chr1 24288476 rs72540327 T C . PASS 0.5764000 0.5821000 0.4315000 0.4254000 0.6391000 0.5300000 36.61 68.91 93 1000.00 0.00 100.00 0 100.00 1/1
chr1 24288529 rs142213874 TAAAC T . PASS 0.6536000 0.9135000 0.8641000 0.9175000 0.8947000 0.8321000 36.32 69.03 71 1000.00 0.00 100.00 0 100.00 1/1
chr1 24294249 rs146630384 C T . PASS 0.9463000 0.9885000 1.0000000 0.9980000 1.0000000 0.9838000 36.61 70.0 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 24334924 rs140608278 T C . PASS . . . . . . 36.08 69.92 13 495.52 0.00 100.00 0 100.00 1/1
chr1 24383819 rs7540491 T C . PASS 0.5303000 0.5663000 0.9514000 0.7276000 0.6984000 0.6925000 35.5 70.0 29 202.39 3.45 27.59 0 27.59 0/1
chr1 24387822 rs7553075 T A . PASS 0.5424000 0.1700000 0.4058000 0.2286000 0.4673000 0.3856000 36.08 70.0 23 425.15 7.36 56.52 0 56.52 0/1
chr1 24388371 rs4649168 T C . PASS 0.9334000 0.9366000 0.9940000 0.9443000 0.9315000 0.9479000 36.38 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 24388417 rs11811060 A G . PASS 0.2027000 0.1282000 0.4058000 0.2038000 0.3865000 0.2694000 36.31 70.0 84 1000.00 5.71 41.67 0 41.67 0/1
chr1 24388679 rs3795303 T C . PASS 0.4561000 0.1455000 0.3899000 0.2038000 0.3906000 0.3363000 37.0 70.0 15 423.63 3.33 80.00 0 80.00 0/1
chr1 24389510 . AA A . PASS . . . . . . 37.0 70.0 10 53.18 0.00 30.00 0 30.00 0/1
chr1 24392600 rs6682222 G A . PASS 0.4841000 0.1599000 0.1964000 0.1421000 0.3149000 0.2796000 37.0 70.0 11 226.82 20.78 63.64 0 63.64 0/1
chr1 24393563 rs16829071 C T . PASS 0.4871000 0.1599000 0.1964000 0.1421000 0.3149000 0.2804000 37.0 70.0 67 1000.00 8.58 71.64 0 71.64 0/1
chr1 24394424 rs7542151 G A . PASS 0.4818000 0.1599000 0.1964000 0.1421000 0.3149000 0.2790000 37.0 70.0 43 506.43 2.33 37.21 0 37.21 0/1
chr1 24394673 rs12125641 C T . PASS 0.2700000 0.1470000 0.1964000 0.1402000 0.3139000 0.2206000 33.73 70.0 26 285.97 15.38 38.46 0 42.31 0/1
chr1 24394811 rs12145360 A G . PASS 0.2262000 0.1427000 0.1964000 0.1372000 0.2536000 0.1961000 36.66 70.0 54 1000.00 0.53 64.81 0 64.81 0/1
chr1 24400584 rs6660949 G C . PASS 0.9349000 0.9813000 0.9921000 0.9980000 0.9438000 0.9673000 36.16 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 24400633 rs10903083 C G . PASS 0.9349000 0.9813000 0.9921000 0.9980000 0.9438000 0.9673000 36.6 70.0 89 1000.00 0.00 100.00 0 100.00 1/1
chr1 24409165 rs4320728 C T . PASS 0.1929000 0.1398000 0.1925000 0.1332000 0.2495000 0.1845000 37.0 70.0 93 1000.00 10.75 38.71 0 38.71 0/1
chr1 24416059 rs4393101 T C . PASS 0.9289000 0.9841000 1.0000000 0.9990000 1.0000000 0.9788000 36.57 70.0 84 1000.00 0.00 100.00 0 100.00 1/1
chr1 24416133 rs4276859 C T . PASS 0.1876000 0.1254000 0.1845000 0.1143000 0.2403000 0.1739000 36.57 70.0 50 974.59 4.57 56.00 0 56.00 0/1
chr1 24416628 rs72648548 T C . PASS 0.0038000 0.1110000 0.0377000 0.0646000 0.1656000 0.0693000 34.33 67.78 17 268.28 3.92 52.94 0 52.94 0/1
chr1 24434595 rs11249170 T C . PASS 0.7784000 0.5778000 0.6984000 0.6153000 0.7832000 0.7027000 37.0 70.0 23 925.24 0.00 100.00 0 100.00 1/1
chr1 24447943 rs34967816 G A . PASS 0.2186000 0.0620000 0.0030000 0.0974000 0.1575000 0.1172000 37.0 70.0 115 1000.00 2.43 43.48 0 43.48 0/1
chr1 24448371 rs4442319 T C . PASS 0.7216000 0.7392000 0.7421000 0.6491000 0.8139000 0.7316000 35.8 70.0 10 370.22 0.00 100.00 0 100.00 1/1
chr1 24449684 rs12070496 C G . PASS 0.1929000 0.0346000 0.0188000 0.0308000 0.0348000 0.0725000 37.0 70.0 12 177.88 0.00 50.00 0 50.00 0/1
chr1 24454688 rs16829204 C T . PASS 0.2390000 0.1513000 0.0020000 0.1680000 0.1759000 0.1526000 37.0 70.0 96 1000.00 1.19 58.33 0 58.33 0/1
chr1 24460797 rs17852649 T G . PASS 0.6989000 0.4625000 0.2956000 0.6123000 0.4734000 0.5236000 37.0 70.0 91 1000.00 0.00 100.00 0 100.00 1/1
chr1 24463563 rs4486393 C T . PASS 0.3003000 0.1585000 0.0040000 0.2157000 0.2188000 0.1881000 36.5 70.0 54 795.47 17.59 44.44 0 44.44 0/1
chr1 24463854 rs41268137 C T . PASS 0.1770000 0.1023000 0.0010000 0.1382000 0.1104000 0.1104000 36.08 70.0 29 411.25 7.96 44.83 0 44.83 0/1
chr1 24484108 rs72648587 G A . PASS 0.0613000 0.0418000 0.0020000 0.0805000 0.0368000 0.0457000 37.0 70.0 74 1000.00 7.97 52.70 0 52.70 0/1
chr1 24484441 rs946671 A G . PASS 0.9894000 0.9986000 1.0000000 0.9950000 1.0000000 0.9960000 37.0 68.82 17 674.61 0.00 100.00 0 100.00 1/1
chr1 24485518 rs10751769 T C . PASS 0.9894000 0.9986000 1.0000000 0.9950000 0.9990000 0.9958000 36.78 69.63 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 24485941 rs4649195 T C . PASS 0.4546000 0.6427000 0.5069000 0.7157000 0.7086000 0.5933000 37.0 70.0 54 1000.00 6.75 62.96 0 62.96 0/1
chr1 24495839 rs72648600 T C . PASS 0.0628000 0.0072000 0.0248000 0.0179000 0.0020000 0.0266000 36.59 70.0 56 998.30 8.25 51.79 0 51.79 0/1
chr1 24496085 rs34654982 G A . PASS 0.2890000 0.0432000 0.0327000 0.0417000 0.0971000 0.1162000 36.48 70.0 111 1000.00 7.91 41.44 0 41.44 0/1
chr1 24513608 rs12094257 C T . PASS 0.2103000 0.2349000 0.0060000 0.4533000 0.3129000 0.2414000 36.14 70.0 35 434.95 11.43 40.00 0 40.00 0/1
chr1 24513768 rs4090311 G A . PASS 0.9402000 0.8559000 0.6379000 0.8539000 0.8793000 0.8385000 35.96 69.13 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 24635170 rs6671571 A G . PASS 0.5847000 0.6499000 0.5615000 0.5328000 0.5297000 0.5679000 36.51 70.0 98 1000.00 0.00 100.00 0 100.00 1/1
chr1 24657860 rs2486669 A G . PASS 0.3434000 0.1455000 0.1925000 0.1610000 0.1452000 0.2103000 37.0 70.0 18 331.05 26.67 55.56 0 55.56 0/1
chr1 24658063 rs2486668 C G . PASS 0.2277000 0.1311000 0.1944000 0.1640000 0.1442000 0.1785000 37.0 70.0 79 1000.00 2.30 54.43 0 54.43 0/1
chr1 24662903 rs12062028 G C . PASS 0.2224000 0.0807000 0.0000000 0.0915000 0.0297000 0.0940000 37.0 70.0 27 466.89 12.70 51.85 0 51.85 0/1
chr1 24668667 rs11576645 C G . PASS 0.0772000 0.1527000 0.1230000 0.2068000 0.2556000 0.1577000 37.0 69.57 93 1000.00 0.92 50.54 0 50.54 0/1
chr1 24668842 rs4648974 T C . PASS 0.0946000 0.3588000 0.4593000 0.2972000 0.2485000 0.2754000 37.0 70.0 24 104.14 5.00 20.83 0 20.83 0/1
chr1 24671464 . ACCCTCCACACCTGTGCC A . PASS . . . . . . 37.0 70.0 48 1000.00 0.00 75.00 0 75.00 0/1
chr1 24680915 rs12030057 C T . PASS 0.0703000 0.3818000 0.4127000 0.2982000 0.2843000 0.2700000 36.23 70.0 134 1000.00 3.23 46.27 0 46.27 0/1
chr1 24690764 rs545809 T A . PASS 0.2247000 0.2305000 0.4127000 0.2734000 0.3569000 0.2989000 35.57 70.0 83 1000.00 1.09 50.60 0 50.60 0/1
chr1 24706329 rs41307808 C A . PASS 0.1619000 0.0432000 0.0000000 0.0517000 0.1125000 0.0811000 37.0 70.0 81 1000.00 9.88 44.44 0 44.44 0/1
chr1 24768616 rs72652567 G A . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 36.5 70.0 89 1000.00 10.11 53.93 0 53.93 0/1
chr1 24927561 rs4553122 T C . PASS 0.5113000 0.5245000 0.5863000 0.5586000 0.5838000 0.5519000 36.68 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 24927625 rs4378146 C A . PASS 0.2209000 0.1441000 0.1696000 0.2416000 0.1718000 0.1945000 37.0 70.0 11 419.85 0.00 100.00 0 100.00 1/1
chr1 24932942 rs9661044 T C . PASS 0.5454000 0.5288000 0.5863000 0.5636000 0.5859000 0.5629000 36.59 69.83 117 1000.00 0.00 100.00 0 100.00 1/1
chr1 24989762 rs4649011 G T . PASS 0.9970000 0.9827000 1.0000000 0.9742000 0.9939000 0.9904000 37.0 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 25140825 rs3890756 A G . PASS 0.3843000 0.2723000 0.4841000 0.2982000 0.4560000 0.3856000 37.0 70.0 16 128.22 0.00 31.25 0 31.25 0/1
chr1 25153692 rs4649022 G A . PASS 0.9145000 0.9885000 1.0000000 0.9990000 1.0000000 0.9756000 35.91 70.0 11 411.98 0.00 100.00 0 100.00 1/1
chr1 25256444 rs71514255 G A . PASS 0.1747000 0.5476000 0.5585000 0.5746000 0.6074000 0.4685000 34.6 68.0 10 358.20 0.00 100.00 0 100.00 1/1
chr1 25508271 rs6600268 C T . PASS 0.4637000 0.6484000 0.4315000 0.6173000 0.3998000 0.5012000 35.36 70.0 22 847.43 0.00 100.00 0 100.00 1/1
chr1 25554719 rs35324907 G A . PASS 0.0008000 0.0476000 0.0000000 0.0258000 0.0082000 0.0135780 37.0 70.0 37 649.80 19.06 51.35 0 51.35 0/1
chr1 25611035 rs2301153 G C . PASS 0.1543000 0.6700000 0.8036000 0.7644000 0.8885000 0.6224000 37.0 68.83 90 1000.00 0.00 100.00 0 100.00 1/1
chr1 25617399 rs28521909 T C . PASS 0.6339000 0.8444000 0.9871000 0.7485000 0.8834000 0.8059000 35.8 68.8 10 370.22 0.00 100.00 0 100.00 1/1
chr1 25617406 rs28562109 G A . PASS 0.6271000 0.8401000 0.9831000 0.7455000 0.8824000 0.8019000 37.0 68.8 10 382.23 0.00 100.00 0 100.00 1/1
chr1 25634143 rs2427766 T C . PASS 0.0030000 0.0490000 0.2619000 0.1491000 0.2321000 0.1356000 37.0 65.9 10 382.23 0.00 100.00 0 100.00 1/1
chr1 25678238 rs3093616 T A . PASS 0.7632000 0.9726000 1.0000000 0.9960000 0.9990000 0.9327000 36.67 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 25684019 . A AGTGTGTGT . PASS . . . . . . 36.0 70.0 10 128.69 40.00 20.00 0 50.00 0/1
chr1 25717139 rs636889 C T . PASS 0.5991000 0.4784000 0.2361000 0.5527000 0.3139000 0.4443000 36.72 67.21 69 1000.00 7.35 62.32 0 62.32 0/1
chr1 25747399 rs2072931 G T . PASS 0.1846000 0.4193000 0.2262000 0.5408000 0.3200000 0.3235000 34.0 53.5 12 82.33 0.00 33.33 0 33.33 0/1
chr1 25780889 rs141203814 A ATG . PASS . . . . . . 36.14 70.0 50 647.60 1.71 42.00 0 42.00 0/1
chr1 25780893 rs61775167 A G . PASS 0.1838000 0.5115000 0.7728000 0.4533000 0.6779000 0.4984000 37.0 70.0 46 876.35 3.30 54.35 0 56.52 0/1
chr1 25785451 rs35530120 A G . PASS 0.1800000 0.5115000 0.7728000 0.4523000 0.6779000 0.4972000 37.0 70.0 19 369.82 8.61 57.89 0 57.89 0/1
chr1 25893241 rs35137241 ATG ACA . PASS . . . . . . 35.5 70.0 12 424.00 0.00 100.00 0 100.00 1/1
chr1 25993449 rs11290438 AG A . PASS . . . . . . 36.77 70.0 107 1000.00 0.00 100.00 0 100.00 1/1
chr1 26085048 rs11321223 AG A . PASS 0.9660000 0.8890000 0.9901000 0.8161000 0.8630000 0.9099000 35.0 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 26098107 rs2072747 G A . PASS 0.3759000 0.5735000 0.7440000 0.6571000 0.7096000 0.5990000 36.54 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 26098333 rs807264 G A . PASS 0.8707000 0.8818000 0.9901000 0.8181000 0.8661000 0.8848000 36.05 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 26107321 rs807274 A C . PASS 0.9660000 0.8862000 0.9901000 0.8121000 0.8630000 0.9087000 37.0 70.0 11 419.85 0.00 100.00 0 100.00 1/1
chr1 26107688 rs807273 C A . PASS 0.8321000 0.8689000 0.9901000 0.8091000 0.8640000 0.8706000 36.35 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 26109237 rs12567324 A G . PASS 0.5151000 0.5865000 0.7302000 0.6412000 0.7198000 0.6336000 36.08 69.62 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 26109307 rs2072746 G C . PASS 0.5151000 0.5865000 0.7312000 0.6412000 0.7198000 0.6338000 34.6 70.0 10 354.06 0.00 100.00 0 100.00 1/1
chr1 26110065 rs3820514 A G . PASS 0.3306000 0.5648000 0.7312000 0.6431000 0.7219000 0.5829000 35.0 70.0 12 441.74 0.00 100.00 0 100.00 1/1
chr1 26110143 rs3767877 G A . PASS 0.5477000 0.5865000 0.7272000 0.6431000 0.7209000 0.6422000 35.64 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 26127425 rs6659086 G A . PASS 0.7927000 0.7233000 0.6448000 0.5258000 0.7403000 0.6895000 35.91 70.0 11 411.98 0.00 100.00 0 100.00 1/1
chr1 26131654 rs7349185 G A . PASS 0.7451000 0.8919000 0.9395000 0.7803000 0.8998000 0.8419000 36.72 70.0 129 1000.00 0.00 100.00 0 100.00 1/1
chr1 26138136 rs760598 C A . PASS 0.4054000 0.8343000 0.9683000 0.7664000 0.8988000 0.7470000 36.36 70.0 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 26138262 rs760597 T C . PASS 0.5575000 0.8516000 0.9683000 0.7753000 0.9018000 0.7919000 36.47 70.0 90 1000.00 0.00 100.00 0 100.00 1/1
chr1 26138451 rs11247744 A G . PASS 0.5575000 0.8516000 0.9683000 0.7753000 0.9018000 0.7919000 36.48 70.0 23 913.22 0.00 100.00 0 100.00 1/1
chr1 26139055 . A AACACAC . PASS . . . . . . 36.2 70.0 12 264.74 21.43 58.33 0 75.00 0/1
chr1 26139137 rs10902685 C T . PASS 0.2126000 0.8285000 0.9683000 0.7753000 0.9018000 0.6977000 35.24 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 26139392 rs3738451 A G . PASS 0.5711000 0.8501000 0.9683000 0.7753000 0.9018000 0.7953000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 26140573 rs2294228 C A . PASS 0.2118000 0.8285000 0.9683000 0.7753000 0.9018000 0.6975000 35.8 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 26152758 rs6598924 A G . PASS 0.8033000 0.8761000 0.9782000 0.7763000 0.9008000 0.8622000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 26349109 rs78022960 C CT . PASS 0.0779000 0.1066000 0.0605000 0.2008000 0.0654000 0.1006000 35.4 70.0 20 410.74 6.92 65.00 0 65.00 0/1
chr1 26357667 rs11247848 G A . PASS 0.1513000 0.1484000 0.1845000 0.1859000 0.0736000 0.1494000 36.09 70.0 116 1000.00 1.14 45.69 0 45.69 0/1
chr1 26357855 rs2802321 A G . PASS 0.9032000 0.9942000 1.0000000 0.9990000 0.9990000 0.9732000 37.0 68.82 17 674.61 0.00 100.00 0 100.00 1/1
chr1 26369297 rs2997451 T C . PASS 0.8071000 0.9323000 0.9345000 0.8936000 0.8313000 0.8722000 37.0 70.0 12 223.80 4.76 58.33 0 58.33 0/1
chr1 26371788 rs3121763 G A . PASS 0.6014000 0.8948000 0.9345000 0.8907000 0.8303000 0.8119000 37.0 70.0 10 104.51 20.00 40.00 0 40.00 0/1
chr1 26384013 rs12059101 A G . PASS 0.1248000 0.1052000 0.0556000 0.2157000 0.0787000 0.1174000 37.0 70.0 35 781.13 3.90 62.86 0 62.86 0/1
chr1 26385003 rs2275950 T C . PASS 0.2670000 0.1239000 0.1706000 0.2187000 0.0838000 0.1823000 36.14 70.0 56 944.52 0.00 50.00 0 50.00 0/1
chr1 26385150 rs2275949 G C . PASS 0.1747000 0.1138000 0.1706000 0.2187000 0.0849000 0.1567000 35.29 70.0 15 198.62 5.71 46.67 0 46.67 0/1
chr1 26487940 rs3748856 A G . PASS 0.0401000 0.2305000 0.2718000 0.3250000 0.1288000 0.1877000 37.0 70.0 56 1000.00 5.36 57.14 0 57.14 0/1
chr1 26488019 rs3748857 G A . PASS 0.0076000 0.3890000 0.5794000 0.1133000 0.4448000 0.2821000 36.11 70.0 62 884.69 2.75 43.55 0 43.55 0/1
chr1 26494886 rs3762459 C G . PASS 0.4841000 0.5346000 0.6468000 0.3121000 0.5266000 0.4976000 36.31 70.0 176 1000.00 2.27 59.09 0 59.09 0/1
chr1 26496455 rs2232648 C T . PASS 0.0401000 0.2147000 0.2659000 0.3191000 0.1258000 0.1825000 36.59 70.0 62 980.24 2.11 46.77 0 46.77 0/1
chr1 26496651 rs7087 T C . PASS 0.6301000 0.5504000 0.6429000 0.2992000 0.5256000 0.5347000 36.08 70.0 105 1000.00 6.96 49.52 0 49.52 0/1
chr1 26496870 rs2232654 A G . PASS 0.3480000 0.5259000 0.6429000 0.3161000 0.5286000 0.4609000 37.0 70.0 22 402.56 7.58 54.55 0 54.55 0/1
chr1 26497340 rs8768 A C . PASS 0.7549000 0.8559000 0.9712000 0.7684000 0.8865000 0.8409000 35.91 70.0 11 407.83 0.00 100.00 0 100.00 1/1
chr1 26504196 rs2783707 C G . PASS 0.6309000 0.5504000 0.6419000 0.3002000 0.5276000 0.5353000 37.0 70.0 18 410.44 22.22 66.67 0 66.67 0/1
chr1 26508293 rs3819033 G A . PASS 0.0053000 0.4063000 0.5933000 0.1004000 0.4540000 0.2859000 37.0 70.0 27 220.43 13.89 29.63 0 29.63 0/1
chr1 26508480 rs2275945 T C . PASS 0.1573000 0.4193000 0.6329000 0.1014000 0.4560000 0.3365000 36.25 70.0 32 527.53 6.25 50.00 0 50.00 0/1
chr1 26511700 rs2783680 A G . PASS 0.4713000 0.7767000 0.9702000 0.5964000 0.8384000 0.7109000 36.36 70.0 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 26515529 rs11278474,rs59607766,rs141225811,rs72500733 ACCAGACT A . PASS 0.8094000 0.9798000 1.0000000 0.9990000 1.0000000 0.9467000 35.94 70.0 17 605.27 0.00 100.00 0 100.00 1/1
chr1 26524706 rs9970046 A G . PASS 0.8154000 0.6628000 0.4216000 0.9006000 0.5102000 0.6725000 37.0 70.0 57 965.53 12.41 49.12 0 49.12 0/1
chr1 26527783 rs6703730 G A . PASS 0.0287000 0.2118000 0.2123000 0.3310000 0.1186000 0.1693000 37.0 70.0 25 685.92 6.74 76.00 0 76.00 0/1
chr1 26529121 rs6691747 G C . PASS 0.3396000 0.5216000 0.4008000 0.6093000 0.3865000 0.4405000 36.14 70.0 22 469.94 6.49 63.64 0 63.64 0/1
chr1 26545946 rs6697521 A C . PASS 0.8805000 0.6916000 0.4573000 0.9264000 0.6063000 0.7248000 36.29 69.47 73 1000.00 10.80 46.58 0 46.58 0/1
chr1 26582091 rs3795686 G A . PASS 0.0575000 0.2363000 0.2599000 0.3022000 0.1299000 0.1863000 35.29 70.0 70 878.38 2.86 40.00 0 40.00 0/1
chr1 26597435 rs4659419 G A . PASS 0.8812000 0.6960000 0.4583000 0.9304000 0.6053000 0.7264000 37.0 70.0 26 432.29 7.69 50.00 0 50.00 0/1
chr1 26597673 rs11247894 G A . PASS 0.6165000 0.5245000 0.4077000 0.6004000 0.4499000 0.5260000 36.05 70.0 75 1000.00 4.14 50.67 0 50.67 0/1
chr1 26601385 rs3795685 G A . PASS 0.3374000 0.4049000 0.3095000 0.6322000 0.2853000 0.3902000 37.0 70.0 12 98.49 16.67 33.33 0 33.33 0/1
chr1 26601570 rs11577318 A G . PASS 0.2027000 0.1124000 0.0228000 0.2068000 0.1074000 0.1362000 36.38 70.0 70 1000.00 4.84 55.71 0 55.71 0/1
chr1 26607123 rs12759434 C T . PASS 0.3525000 0.4020000 0.3085000 0.6282000 0.2853000 0.3928000 35.29 70.0 11 214.80 0.00 63.64 0 63.64 0/1
chr1 26608649 rs12750420 G A . PASS 0.0605000 0.2334000 0.2609000 0.3032000 0.1299000 0.1871000 37.0 70.0 23 148.93 0.00 26.09 0 26.09 0/1
chr1 26608782 rs34209692 C T . PASS 0.0582000 0.2349000 0.2599000 0.3022000 0.1299000 0.1863000 34.33 70.0 131 1000.00 5.60 34.35 0 34.35 0/1
chr1 26608814 rs6672357 A G . PASS 0.8865000 0.7219000 0.5169000 0.9324000 0.6380000 0.7500000 36.14 70.0 167 1000.00 9.14 25.75 0 33.53 0/1
chr1 26608819 rs66614970 AGGGACTGGGGCCGGGACCGGGACC A . PASS . . . . . . 34.41 69.9 207 1000.00 0.00 100.00 0 100.00 1/1
chr1 26608852 rs61775089 G A . PASS . . . . . . 35.78 70.0 203 1000.00 41.86 23.15 0 29.06 0/1
chr1 26609259 rs7522905 C T . PASS 0.3245000 0.3948000 0.3095000 0.6282000 0.2853000 0.3846000 36.68 69.47 167 1000.00 3.69 45.51 0 45.51 0/1
chr1 26609307 rs6598952 G T . PASS 0.8812000 0.6945000 0.4583000 0.9304000 0.6053000 0.7262000 36.74 69.57 124 1000.00 1.82 37.90 0 37.90 0/1
chr1 26610891 rs4332350 A C . PASS 0.8828000 0.6945000 0.4603000 0.9304000 0.6053000 0.7270000 36.75 69.79 170 1000.00 4.07 56.47 0 56.47 0/1
chr1 26612042 rs11247898 A G . PASS 0.8820000 0.6945000 0.4583000 0.9304000 0.5869000 0.7228000 36.45 70.0 84 1000.00 3.03 52.38 0 52.38 0/1
chr1 26620846 rs3832184 C CA . PASS 0.8752000 0.6902000 0.4583000 0.9264000 0.5859000 0.7194000 36.8 70.0 113 1000.00 5.70 47.79 0 47.79 0/1
chr1 26627478 rs2276712 T C . PASS 0.5885000 0.5735000 0.4385000 0.7356000 0.4939000 0.5673000 37.0 70.0 76 1000.00 10.23 47.37 0 47.37 0/1
chr1 26646726 rs1071849 A G . PASS 0.6301000 0.5807000 0.4415000 0.7356000 0.4980000 0.5807000 36.79 69.66 140 1000.00 3.45 41.43 0 41.43 0/1
chr1 26646730 rs17645 A G . PASS 0.6301000 0.5807000 0.4415000 0.7356000 0.4980000 0.5807000 36.58 69.65 137 1000.00 4.53 41.61 0 41.61 0/1
chr1 26648328 rs12568163 G A . PASS 0.1180000 0.3069000 0.5367000 0.0736000 0.4100000 0.2766000 37.0 70.0 11 143.27 0.00 45.45 0 45.45 0/1
chr1 26648551 rs11247913 G C . PASS 0.5537000 0.5749000 0.4405000 0.7346000 0.5000000 0.5597000 36.33 70.0 39 585.85 0.85 46.15 0 46.15 0/1
chr1 26662774 rs7517559 C T . PASS 0.8200000 0.6354000 0.4464000 0.8330000 0.5603000 0.6711000 36.2 70.0 71 1000.00 0.81 63.38 0 63.38 0/1
chr1 26662904 rs72649360 C T . PASS 0.1331000 0.2507000 0.2639000 0.3022000 0.1360000 0.2103000 37.0 70.0 62 1000.00 0.40 51.61 0 51.61 0/1
chr1 26664219 rs4072445 T C . PASS 0.1377000 0.2493000 0.2659000 0.2972000 0.1452000 0.2125000 36.47 70.0 61 1000.00 2.19 73.77 0 73.77 0/1
chr1 26670401 rs41285435 G A . PASS 0.0000000 0.0072000 0.0000000 0.0169000 0.0072000 0.0057907 37.0 70.0 82 1000.00 2.66 54.88 0 54.88 0/1
chr1 26670444 rs36024412 G T . PASS 0.1150000 0.2478000 0.2669000 0.2962000 0.1462000 0.2065000 37.0 70.0 116 1000.00 1.57 37.93 0 37.93 0/1
chr1 26670609 rs34370465 C T . PASS 0.1142000 0.2478000 0.2659000 0.2913000 0.1452000 0.2049000 37.0 70.0 36 569.27 0.33 47.22 0 47.22 0/1
chr1 26670650 rs199784730 T TTCC . PASS 0.0000000 0.0072000 0.0010000 0.0139000 0.0010000 0.0041933 35.93 69.33 58 1000.00 3.45 50.00 0 51.72 0/1
chr1 26671522 . GAA GGG . PASS . . . . . . 37.0 68.2 107 102.30 17.20 9.35 0 13.08 0/1
chr1 26671526 . T C . PASS . . . . . . 36.08 68.54 99 84.29 14.95 10.10 0 13.13 0/1
chr1 26671533 rs11580306 T G . PASS 0.1604000 0.1023000 0.0357000 0.2674000 0.0706000 0.1312000 36.33 67.94 107 264.93 17.20 14.02 0 16.82 0/1
chr1 26671556 rs12119322 G A . PASS . . . . . . 34.78 67.81 129 530.76 16.47 18.60 0 20.93 0/1
chr1 26671575 rs11579834 A G . PASS 0.5961000 0.4712000 0.3274000 0.7227000 0.3691000 0.5058000 37.0 67.81 161 1000.00 3.58 26.71 0 26.71 0/1
chr1 26671578 rs11579835 A G . PASS 0.6006000 0.4712000 0.3214000 0.7207000 0.3671000 0.5050000 36.72 67.81 168 1000.00 0.28 25.60 0 25.60 0/1
chr1 26671625 . A G . PASS . . . . . . 36.05 66.89 269 709.16 7.92 14.13 0 14.13 0/1
chr1 26671658 rs111981367 G A . PASS . . . . . . 35.88 66.91 283 863.85 4.09 15.19 0 15.19 0/1
chr1 26671690 rs112674559 A G . PASS . . . . . . 36.71 68.78 241 942.78 1.40 17.01 0 17.01 0/1
chr1 26671719 rs201245727 C T . PASS . . . . . . 35.96 67.22 187 341.38 3.95 12.30 0 12.30 0/1
chr1 26689659 rs11247932 G A . PASS 0.0893000 0.4193000 0.2778000 0.3410000 0.2454000 0.2540000 35.91 70.0 23 345.76 2.37 47.83 0 47.83 0/1
chr1 26691174 rs11247933 C A . PASS 0.1233000 0.4193000 0.2778000 0.3410000 0.2474000 0.2634000 36.68 69.73 153 1000.00 3.27 48.37 0 48.37 0/1
chr1 26694245 rs10794531 T C . PASS 0.5862000 0.3228000 0.6230000 0.2863000 0.5665000 0.4930000 36.23 70.0 80 997.60 0.08 38.75 0 38.75 0/1
chr1 26694260 rs10794532 T C . PASS 0.2428000 0.2536000 0.5794000 0.1879000 0.4663000 0.3446000 36.62 70.0 80 1000.00 10.00 40.00 0 40.00 0/1
chr1 26745360 rs11389104 C CA . PASS 0.6067000 0.6254000 0.4038000 0.5944000 0.5808000 0.5609000 36.76 70.0 95 1000.00 3.27 47.37 0 47.37 0/1
chr1 26752992 rs4659441 T C . PASS 0.8495000 0.8718000 0.8631000 0.7843000 0.8548000 0.8433000 36.68 69.53 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 26786627 rs3816539 G A . PASS 0.4811000 0.3069000 0.7093000 0.2346000 0.4908000 0.4553000 36.69 70.0 79 1000.00 1.17 49.37 0 49.37 0/1
chr1 26801229 rs72651510 C A . PASS 0.0227000 0.1268000 0.0099000 0.2654000 0.0358000 0.0859000 37.0 70.0 17 455.23 10.86 76.47 0 76.47 0/1
chr1 26846195 rs4970514 C T . PASS 0.4826000 0.3487000 0.7123000 0.2356000 0.4908000 0.4623000 37.0 70.0 43 631.74 6.36 44.19 0 44.19 0/1
chr1 26856462 rs11800553 T G . PASS 0.9259000 0.9179000 0.9583000 0.9553000 0.9233000 0.9367000 36.61 70.0 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 26869610 rs921893 G A . PASS 0.7231000 0.6340000 0.7887000 0.7505000 0.7004000 0.7250000 36.68 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 26879792 rs4970489 T C . PASS 0.7269000 0.6326000 0.7847000 0.7416000 0.6984000 0.7228000 37.0 68.46 13 507.53 0.00 100.00 0 100.00 1/1
chr1 26879920 rs4970490 T C . PASS 0.9675000 0.9986000 1.0000000 1.0000000 1.0000000 0.9912000 36.62 70.0 95 1000.00 0.00 100.00 0 100.00 1/1
chr1 26881565 rs67600391 AG A . PASS 0.1815000 0.1888000 0.0030000 0.3032000 0.0470000 0.1448000 34.33 70.0 12 424.17 0.00 100.00 0 100.00 1/1
chr1 26900735 rs282179 C G . PASS 0.7557000 0.6974000 0.8492000 0.7783000 0.8323000 0.7859000 36.3 69.71 69 1000.00 0.00 100.00 0 100.00 1/1
chr1 27022833 . T G . PASS . . . . . . 34.0 70.0 12 82.34 133.33 33.33 0 33.33 0/1
chr1 27022837 . A G . PASS . . . . . . 34.6 70.0 18 71.43 144.44 22.22 0 27.78 0/1
chr1 27210721 rs3170660 T C . PASS 0.9781000 0.8256000 0.9970000 0.6292000 0.8885000 0.8732000 36.51 69.8 98 1000.00 0.00 100.00 0 100.00 1/1
chr1 27278521 rs3010110 G A . PASS 0.0144000 0.1210000 0.0288000 0.2604000 0.2505000 0.1276000 37.0 70.0 50 568.91 2.22 36.00 0 36.00 0/1
chr1 27278553 rs3010109 G A . PASS 0.0068000 0.0850000 0.0288000 0.1730000 0.2035000 0.0938000 36.62 70.0 71 1000.00 0.18 45.07 0 45.07 0/1
chr1 27289431 rs71582824 C CCACA . PASS . . . . . . 37.0 70.0 12 195.21 14.29 58.33 0 58.33 0/1
chr1 27320356 rs6689941 T C . PASS 0.9334000 0.9971000 1.0000000 1.0000000 1.0000000 0.9820000 36.54 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 27339103 rs4970471 G T . PASS 0.0416000 0.3833000 0.7232000 0.1700000 0.4714000 0.3359000 35.77 70.0 78 1000.00 7.69 50.00 0 50.00 0/1
chr1 27426796 rs4266911 T C . PASS 0.9939000 0.9784000 1.0000000 0.9632000 0.9969000 0.9874000 37.0 70.0 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 27427041 rs4418629 T C . PASS 1.0000000 0.9798000 1.0000000 0.9632000 0.9969000 0.9892000 36.55 70.0 134 1000.00 0.00 100.00 0 100.00 1/1
chr1 27428321 rs6598870 T C . PASS 0.3374000 0.1960000 0.1151000 0.3479000 0.3476000 0.2772000 34.88 70.0 32 545.28 6.62 53.12 0 53.12 0/1
chr1 27435976 rs3738689 C G . PASS 0.1974000 0.1758000 0.1141000 0.3469000 0.3456000 0.2366000 37.0 70.0 39 723.17 16.85 53.85 0 53.85 0/1
chr1 27480757 rs34306208 A G . PASS 0.2534000 0.1902000 0.1161000 0.3320000 0.3405000 0.2498000 36.79 70.0 115 1000.00 0.82 49.57 0 49.57 0/1
chr1 27503450 rs34300658 T TC . PASS 0.4970000 0.2190000 0.1270000 0.3161000 0.3395000 0.3169000 37.0 69.89 20 267.68 3.33 45.00 0 45.00 0/1
chr1 27503662 rs12119525 T A . PASS 0.3207000 0.1960000 0.1151000 0.3141000 0.3344000 0.2634000 37.0 70.0 17 246.37 20.59 47.06 0 47.06 0/1
chr1 27533906 rs71582851 AGATGAT A . PASS 0.2897000 0.2406000 0.1458000 0.3698000 0.3303000 0.2780000 34.22 69.67 26 227.61 24.79 34.62 1 38.46 0/1
chr1 27533908 . AT A . PASS . . . . . . 34.5 69.7 25 275.41 12.00 40.00 1 40.00 0/1
chr1 27609980 rs6670124 T G . PASS 0.9221000 0.9885000 1.0000000 1.0000000 1.0000000 0.9778000 36.6 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 27676125 rs12122380 C T . PASS 0.0000000 0.0000000 0.0000000 0.0020000 0.0020000 0.0007987 35.91 70.0 30 772.16 0.00 73.33 0 73.33 0/1
chr1 27677233 rs41291094 A G . PASS 0.0000000 0.0000000 0.0000000 0.0020000 0.0020000 0.0007987 37.0 70.0 33 703.61 5.15 60.61 0 60.61 0/1
chr1 27679692 rs11247639 A G . PASS 0.3419000 0.4294000 0.2530000 0.6829000 0.7362000 0.4816000 35.5 70.0 20 229.48 25.00 40.00 0 40.00 0/1
chr1 27679797 rs3813795 A G . PASS 0.3495000 0.4294000 0.2500000 0.6819000 0.7331000 0.4822000 36.79 69.64 125 1000.00 7.57 44.80 0 44.80 0/1
chr1 27680292 rs8533 A G . PASS 0.6891000 0.4813000 0.2431000 0.7247000 0.5286000 0.5463000 36.77 70.0 113 1000.00 1.80 46.02 0 46.02 0/1
chr1 27682440 rs36035221 T TG . PASS 0.7073000 0.2911000 0.1032000 0.3658000 0.1779000 0.3560000 35.5 70.0 20 213.89 15.00 40.00 0 40.00 0/1
chr1 27682481 rs12569127 G A . PASS 0.2050000 0.2089000 0.1022000 0.2952000 0.1401000 0.1903000 36.25 70.0 44 491.41 1.14 36.36 0 36.36 0/1
chr1 27686063 rs7521552 G C . PASS 0.9660000 0.9870000 1.0000000 0.9970000 0.9969000 0.9880000 36.5 70.0 24 950.84 0.00 100.00 0 100.00 1/1
chr1 27687466 rs35659744 G T . PASS 0.0182000 0.1571000 0.0823000 0.2684000 0.1278000 0.1220000 36.62 70.0 71 1000.00 0.18 45.07 0 45.07 0/1
chr1 27690297 rs4075731 G T . PASS 0.7307000 0.2824000 0.0992000 0.3410000 0.1738000 0.3544000 37.0 70.0 28 380.35 30.95 42.86 0 42.86 0/1
chr1 27690359 rs4307592 T C . PASS 0.3124000 0.2248000 0.0992000 0.2913000 0.1411000 0.2196000 35.98 70.0 99 1000.00 0.90 47.47 0 47.47 0/1
chr1 27690644 rs12727507 A G . PASS 0.7307000 0.2824000 0.1012000 0.3410000 0.1738000 0.3548000 36.74 70.0 77 1000.00 6.96 61.04 0 61.04 0/1
chr1 27696011 rs10218730 C T . PASS 0.9750000 0.9928000 1.0000000 1.0000000 1.0000000 0.9924000 37.0 70.0 16 632.84 0.00 100.00 0 100.00 1/1
chr1 27709138 rs79961070 A G . PASS 0.0008000 0.0043000 0.0000000 0.0159000 0.0051000 0.0049920 36.43 70.0 81 1000.00 7.41 51.85 0 51.85 0/1
chr1 27875824 rs4908364 C T . PASS 1.0000000 1.0000000 1.0000000 0.9911000 0.9990000 0.9980000 36.27 70.0 98 1000.00 0.00 100.00 0 100.00 1/1
chr1 27876482 rs2076457 C A . PASS 0.9818000 0.7406000 0.8204000 0.6193000 0.7249000 0.7929000 36.23 70.0 69 1000.00 11.78 44.93 0 44.93 0/1
chr1 27878527 . T G . PASS . . . . . . 31.0 70.0 49 173.56 159.18 20.41 0 20.41 0/1
chr1 27995077 rs56015130 G T . PASS 0.3722000 0.9150000 0.7401000 0.9751000 0.8937000 0.7444000 36.29 70.0 17 658.45 0.00 100.00 0 100.00 1/1
chr1 28086955 rs10902671 C A . PASS 0.9977000 0.9669000 1.0000000 0.9314000 0.9836000 0.9778000 36.4 70.0 20 783.76 0.00 100.00 0 100.00 1/1
chr1 28157446 rs41284290 T G . PASS 0.0038000 0.1297000 0.0020000 0.0676000 0.0409000 0.0409000 36.43 69.52 70 1000.00 2.86 60.00 0 60.00 0/1
chr1 28209305 rs3766398 A G . PASS 0.1445000 0.5086000 0.5099000 0.6322000 0.6871000 0.4724000 36.87 70.0 96 1000.00 0.18 97.92 0 97.92 1/1
chr1 28209362 rs3766399 T C . PASS 0.1566000 0.5086000 0.5040000 0.6322000 0.6871000 0.4744000 36.44 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 28209366 rs3766400 A G . PASS 0.0711000 0.5029000 0.5010000 0.6322000 0.6871000 0.4505000 36.59 70.0 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 28261593 rs3737809 T C . PASS 0.2980000 0.3588000 0.1726000 0.4414000 0.5511000 0.3594000 35.8 70.0 10 370.22 0.00 100.00 0 100.00 1/1
chr1 28261600 rs3737808 A C . PASS 0.0166000 0.3026000 0.1419000 0.3708000 0.4223000 0.2318000 35.8 70.0 10 366.07 0.00 100.00 0 100.00 1/1
chr1 28261658 rs3831926 T TG . PASS 0.3215000 0.3674000 0.1746000 0.4453000 0.5511000 0.3680000 37.0 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 28282819 rs4908381 T C . PASS 0.7784000 0.9669000 1.0000000 0.9781000 1.0000000 0.9325000 35.86 70.0 21 817.67 0.00 100.00 0 100.00 1/1
chr1 28290231 rs4373781 C G . PASS 0.7262000 0.9035000 0.7252000 0.9503000 0.8896000 0.8275000 36.66 69.71 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 28292739 rs4243820 G A . PASS 0.3570000 0.6354000 0.5149000 0.6272000 0.6217000 0.5333000 36.38 69.67 117 1000.00 0.00 100.00 0 100.00 1/1
chr1 28293712 rs6673064 G A . PASS 0.0144000 0.0101000 0.0000000 0.0060000 0.0010000 0.0065895 36.38 69.44 73 1000.00 0.21 53.42 0 53.42 0/1
chr1 28304785 rs72656546 T C . PASS 0.0802000 0.0072000 0.0000000 0.0099000 0.0020000 0.0246000 37.0 70.0 14 217.78 0.00 50.00 0 50.00 0/1
chr1 28319867 rs12140716 C A . PASS 0.0250000 0.0029000 0.0000000 0.0060000 0.0010000 0.0083866 37.0 70.0 53 597.49 20.06 35.85 0 35.85 0/1
chr1 28369213 rs111559121 TA T . PASS 0.0620000 0.0058000 0.0000000 0.0099000 0.0020000 0.0195690 36.33 70.0 18 273.72 0.00 50.00 0 50.00 0/1
chr1 28374815 rs7541031 C T . PASS 0.1233000 0.2032000 0.2579000 0.2495000 0.2290000 0.2075000 37.0 70.0 25 393.54 4.67 48.00 0 48.00 0/1
chr1 28422847 rs2989472 C T . PASS 0.7912000 0.5807000 0.8611000 0.6093000 0.6759000 0.7171000 36.59 68.85 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 28555426 rs567086 G A . PASS 0.6717000 0.2882000 0.0992000 0.3628000 0.2219000 0.3534000 36.68 70.0 71 1000.00 6.93 52.11 0 52.11 0/1
chr1 28562676 rs12154 A G . PASS 0.6619000 0.2478000 0.0992000 0.2893000 0.2209000 0.3303000 37.0 70.0 83 1000.00 5.27 51.81 0 51.81 0/1
chr1 28564252 rs8559 A G . PASS 0.7421000 0.2925000 0.0992000 0.3688000 0.2219000 0.3738000 37.0 70.0 16 169.99 8.33 37.50 0 37.50 0/1
chr1 28564279 rs9508 A G . PASS 0.6596000 0.2478000 0.0992000 0.2932000 0.2209000 0.3305000 37.0 70.0 26 515.83 4.62 57.69 0 57.69 0/1
chr1 28598110 rs67068635 C G . PASS 0.0446000 0.0029000 0.0000000 0.0050000 0.0051000 0.0141770 37.0 70.0 26 302.82 10.77 38.46 0 38.46 0/1
chr1 28733993 rs12091029 G T . PASS 0.6437000 0.3112000 0.0704000 0.3489000 0.1677000 0.3301000 37.0 70.0 57 877.84 3.10 45.61 0 45.61 0/1
chr1 28800380 rs61785974 C A . PASS 0.3048000 0.2666000 0.0704000 0.3111000 0.1585000 0.2250000 36.22 69.57 87 1000.00 0.90 52.87 0 52.87 0/1
chr1 28817597 rs10915235 A G . PASS 0.6422000 0.3112000 0.0704000 0.3489000 0.1667000 0.3295000 36.54 70.0 51 888.04 20.66 50.98 0 50.98 0/1
chr1 28853376 rs3765641 T C . PASS 0.2602000 0.2464000 0.0724000 0.3062000 0.1585000 0.2099000 37.0 70.0 12 265.57 16.67 66.67 0 66.67 0/1
chr1 28861636 rs2066726 G A . PASS 0.3101000 0.2478000 0.0724000 0.3072000 0.1605000 0.2238000 37.0 70.0 81 1000.00 3.70 41.98 0 41.98 0/1
chr1 29016717 . T G . PASS . . . . . . 36.5 66.67 28 264.08 3.17 32.14 0 42.86 0/1
chr1 29063559 rs6697540 A C . PASS 0.8623000 0.9856000 1.0000000 0.9980000 1.0000000 0.9613000 36.66 70.0 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 29064941 rs72663860 A T . PASS 0.0000000 0.0000000 0.0000000 0.0060000 0.0072000 0.0025959 37.0 67.14 18 201.60 23.81 38.89 0 38.89 0/1
chr1 29138975 rs1042114 G T . PASS 0.9796000 0.9193000 1.0000000 0.8678000 0.9366000 0.9445000 36.41 69.51 71 1000.00 5.91 57.75 0 57.75 0/1
chr1 29189597 rs2234918 C T . PASS 0.3056000 0.7032000 0.7540000 0.5726000 0.6984000 0.5813000 36.33 70.0 56 538.83 14.68 32.14 0 32.14 0/1
chr1 29345009 rs5773229 C CTT . PASS 0.9879000 0.9380000 0.9256000 0.8459000 0.9254000 0.9277000 36.74 70.0 24 951.42 0.00 100.00 0 100.00 1/1
chr1 29345027 rs2985334 T G . PASS 0.8752000 0.8415000 0.9256000 0.7286000 0.8773000 0.8516000 35.0 70.0 12 437.59 0.00 100.00 0 100.00 1/1
chr1 29385486 rs2153165 G C . PASS 0.6437000 0.3401000 0.4921000 0.2097000 0.3180000 0.4203000 37.0 70.0 22 314.87 12.73 45.45 0 45.45 0/1
chr1 29391396 rs12070152 A G . PASS 0.6437000 0.3401000 0.4921000 0.2087000 0.3180000 0.4201000 35.5 70.0 13 250.55 3.85 61.54 0 61.54 0/1
chr1 29439016 rs4654390 T A . PASS 0.1286000 0.4957000 0.4325000 0.5159000 0.5593000 0.4026000 37.0 70.0 33 323.52 36.36 33.33 0 33.33 0/1
chr1 29445514 rs553253 C A . PASS 0.3737000 0.6138000 0.4980000 0.6829000 0.6524000 0.5485000 36.11 70.0 111 1000.00 0.50 48.65 0 48.65 0/1
chr1 29475341 rs2230678 C T . PASS 0.5598000 0.5447000 0.1528000 0.7694000 0.4427000 0.4950000 36.0 70.0 96 1000.00 0.00 50.00 0 50.00 0/1
chr1 29475394 rs2230677 C G . PASS 0.5598000 0.5447000 0.1528000 0.7694000 0.4438000 0.4952000 36.05 70.0 74 1000.00 5.41 50.00 0 51.35 0/1
chr1 29475648 rs2230679 T G . PASS 0.7231000 0.7450000 0.5635000 0.8817000 0.6943000 0.7202000 36.47 70.0 83 1000.00 2.30 54.22 0 54.22 0/1
chr1 29486011 rs72649257 C T . PASS 0.0008000 0.0014000 0.0000000 0.0139000 0.0041000 0.0039936 37.0 70.0 34 408.21 3.17 38.24 0 38.24 0/1
chr1 29529699 rs1062924 T C . PASS 0.8238000 0.7493000 0.5615000 0.8807000 0.6943000 0.7468000 36.86 70.0 167 1000.00 6.46 50.30 0 50.30 0/1
chr1 29542435 rs2640469 C G . PASS 0.8820000 0.9380000 0.8254000 0.9861000 0.8333000 0.8898000 37.0 68.67 15 586.92 0.00 100.00 0 100.00 1/1
chr1 29542637 rs1128400 A G . PASS 0.7231000 0.7334000 0.5625000 0.8797000 0.6943000 0.7181000 36.76 70.0 70 1000.00 9.14 71.43 0 71.43 0/1
chr1 29547495 rs72649272 C T . PASS 0.0008000 0.0130000 0.0000000 0.0199000 0.0072000 0.0073882 37.0 70.0 46 998.64 7.45 60.87 0 60.87 0/1
chr1 29557224 rs2640466 C T . PASS 0.6853000 0.7161000 0.5625000 0.8579000 0.6902000 0.7005000 36.23 70.0 60 1000.00 3.23 51.67 0 51.67 0/1
chr1 29563059 rs75011501 C T . PASS 0.0439000 0.3228000 0.0744000 0.4533000 0.3108000 0.2230000 35.0 70.0 13 167.01 12.82 46.15 0 46.15 0/1
chr1 29616318 rs2076620 C A . PASS 0.0719000 0.1902000 0.1627000 0.1809000 0.1411000 0.1420000 37.0 70.0 45 872.19 5.33 55.56 0 55.56 0/1
chr1 29631236 rs3831903 C CTA . PASS 0.6626000 0.5821000 0.8313000 0.4175000 0.6554000 0.6348000 35.0 70.0 19 268.43 5.26 52.63 0 52.63 0/1
chr1 30028329 rs72652657 G C . PASS 0.0083000 0.1225000 0.0060000 0.1809000 0.0665000 0.0697000 37.0 70.0 21 401.41 7.14 57.14 0 57.14 0/1
chr1 30028399 rs113711260 AC A . PASS 0.3911000 0.4669000 0.4960000 0.5577000 0.5235000 0.4820000 36.27 70.0 44 1000.00 0.00 100.00 1 100.00 1/1
chr1 30028399 . ACT AA . PASS . . . . . . . . 43 1000.00 0.00 100.00 1 100.00 1/1
chr1 30028401 rs115192958 T A . PASS 0.3911000 0.4669000 0.4960000 0.5577000 0.5235000 0.4820000 36.72 70.0 43 1000.00 0.00 100.00 1 100.00 1/1
chr1 30028437 rs67913534 C T . PASS 0.3888000 0.4683000 0.4970000 0.5567000 0.5235000 0.4816000 35.84 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 30284090 rs12030673 G A . PASS 0.3238000 0.5605000 0.6756000 0.5557000 0.4673000 0.5020000 36.04 69.6 100 1000.00 0.00 100.00 0 100.00 1/1
chr1 30557665 rs267654 T C . PASS 0.6256000 0.3401000 0.3770000 0.4185000 0.5378000 0.4772000 37.0 70.0 89 1000.00 0.51 39.33 0 39.33 0/1
chr1 30988426 . GCAG G . PASS . . . . . . 35.5 70.0 10 88.95 10.00 40.00 0 40.00 0/1
chr1 30988530 rs379605 G T . PASS 0.6407000 0.4121000 0.4762000 0.4155000 0.3241000 0.4688000 36.4 70.0 73 567.06 4.11 27.40 0 27.40 0/1
chr1 31186387 rs1746059 C T . PASS 0.4629000 0.2363000 0.3353000 0.1034000 0.0992000 0.2626000 35.91 70.0 50 1000.00 1.09 66.00 0 66.00 0/1
chr1 31188901 rs20566 A G . PASS 0.8411000 0.6787000 0.6052000 0.4682000 0.3701000 0.6042000 36.79 70.0 114 1000.00 10.53 50.00 0 50.00 0/1
chr1 31196255 rs45601237 G A . PASS 0.0333000 0.2032000 0.1726000 0.3350000 0.4223000 0.2214000 36.08 70.0 50 879.04 0.31 52.00 0 52.00 0/1
chr1 31210656 rs56296001 G A . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 70.0 13 220.79 46.15 53.85 0 53.85 0/1
chr1 31215364 rs1050663 T C . PASS 0.6188000 0.6873000 0.6716000 0.5258000 0.5389000 0.6046000 36.62 70.0 74 1000.00 3.72 43.24 0 43.24 0/1
chr1 31347399 rs4949184 C T . PASS 0.3782000 0.1628000 0.0665000 0.1799000 0.3200000 0.2344000 36.82 70.0 165 1000.00 4.94 41.21 0 41.21 0/1
chr1 31349647 rs2491132 C T . PASS 0.0091000 0.1009000 0.0347000 0.2107000 0.0542000 0.0763000 35.96 70.0 74 681.49 9.17 31.08 0 31.08 0/1
chr1 31351513 rs1891419 G A . PASS 0.0295000 0.2795000 0.1111000 0.3042000 0.2454000 0.1779000 37.0 70.0 91 1000.00 0.73 42.86 0 42.86 0/1
chr1 31409726 rs56387244 CCT C . PASS 0.0378000 0.3141000 0.0040000 0.2873000 0.2188000 0.1548000 35.38 67.5 29 194.84 0.86 27.59 0 27.59 0/1
chr1 31413972 rs3795433 T C . PASS 0.0023000 0.1268000 0.2688000 0.0785000 0.1779000 0.1228000 36.11 70.0 68 866.63 9.48 39.71 0 39.71 0/1
chr1 31415038 rs34524909,rs72358411 TTATATATATATATATA T . PASS . . . . . . 35.75 70.0 20 366.66 0.00 100.00 0 100.00 1/1
chr1 31415056 . A T . PASS . . . . . . 35.5 70.0 10 255.44 5.00 80.00 0 80.00 0/1
chr1 31418119 rs12142833 C T . PASS 0.1770000 0.3300000 0.0040000 0.2873000 0.2209000 0.1941000 35.5 70.0 18 235.50 22.22 44.44 0 44.44 0/1
chr1 31426815 rs2275741 A G . PASS 0.2859000 0.4726000 0.3462000 0.3767000 0.3640000 0.3574000 36.59 70.0 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 31478638 rs72062557,rs57530886,rs10580059,rs36217882,rs144492568,rs10580178 AAGAGAG A . PASS . . . . . . 34.54 70.0 70 1000.00 2.39 95.71 0 100.00 1/1
chr1 31501755 rs4949331 T C . PASS 0.2579000 0.3386000 0.0288000 0.2942000 0.2229000 0.2234000 37.0 70.0 37 733.34 15.44 56.76 0 56.76 0/1
chr1 31709214 rs10798836 C T . PASS 0.4962000 0.5245000 0.3462000 0.6223000 0.3292000 0.4627000 37.0 70.0 48 533.14 5.15 35.42 0 35.42 0/1
chr1 31712314 rs12025507 C T . PASS 0.0719000 0.3242000 0.4474000 0.2117000 0.4049000 0.2756000 36.31 70.0 61 1000.00 3.65 57.38 0 57.38 0/1
chr1 31734353 rs41303429 C T . PASS 0.0000000 0.0130000 0.0000000 0.0229000 0.0082000 0.0079872 36.25 69.38 67 1000.00 7.46 47.76 0 47.76 0/1
chr1 31740668 rs3753374 C T . PASS 0.0552000 0.4726000 0.1756000 0.6193000 0.3221000 0.3027000 35.0 70.0 24 372.52 8.33 50.00 0 50.00 0/1
chr1 31740706 rs3753373 A G . PASS 0.0696000 0.3242000 0.4454000 0.2107000 0.4080000 0.2750000 37.0 70.0 36 360.42 11.11 33.33 0 33.33 0/1
chr1 31744168 rs3737755 G A . PASS 0.0560000 0.4726000 0.1766000 0.6193000 0.3221000 0.3031000 37.0 70.0 15 173.00 26.67 40.00 0 40.00 0/1
chr1 31764693 rs12135540 G A . PASS 0.0560000 0.4726000 0.1756000 0.6193000 0.3221000 0.3029000 36.4 70.0 28 706.65 7.14 71.43 0 71.43 0/1
chr1 31764713 rs71028753,rs142762586 C CAAG . PASS 0.4433000 0.5144000 0.3462000 0.6223000 0.3282000 0.4471000 36.69 70.0 41 853.53 3.75 63.41 0 63.41 0/1
chr1 31764930 rs10733007 T C . PASS 0.9236000 0.9957000 1.0000000 1.0000000 1.0000000 0.9792000 37.0 70.0 15 591.07 0.00 100.00 0 100.00 1/1
chr1 31840426 rs2271072 C G . PASS 0.4433000 0.5058000 0.1825000 0.6123000 0.3231000 0.4099000 37.0 70.0 25 431.14 1.85 52.00 0 52.00 0/1
chr1 31882582 rs4012494,rs6143179 G GGCCTCA . PASS 0.5280000 0.5216000 0.7996000 0.4404000 0.6779000 0.5935000 37.0 70.0 13 163.43 28.21 46.15 0 46.15 0/1
chr1 31883295 rs6701521 T C . PASS 0.5295000 0.5202000 0.7996000 0.4384000 0.6789000 0.5935000 36.08 70.0 82 1000.00 10.13 47.56 0 47.56 0/1
chr1 31886163 rs12042883 C T . PASS 0.0840000 0.3429000 0.4008000 0.2634000 0.4172000 0.2847000 36.11 70.0 52 914.79 7.83 51.92 0 51.92 0/1
chr1 31886833 rs10914377 T C . PASS 0.5310000 0.5144000 0.7996000 0.4374000 0.6779000 0.5927000 35.56 70.0 49 828.28 1.63 51.02 0 51.02 0/1
chr1 31896608 rs78029434 C T . PASS 0.0000000 0.0086000 0.0020000 0.0338000 0.0348000 0.0151760 36.13 70.0 189 1000.00 7.64 51.32 0 51.32 0/1
chr1 31897493 rs1320585 A G . PASS 0.6740000 0.9697000 1.0000000 0.9970000 1.0000000 0.9091000 36.83 69.72 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 31898132 rs4949400 T C . PASS 0.1452000 0.4481000 0.1994000 0.5596000 0.3252000 0.3165000 37.0 70.0 53 768.72 13.45 43.40 0 43.40 0/1
chr1 31898162 rs4949401 C T . PASS 0.1452000 0.4496000 0.1994000 0.5596000 0.3252000 0.3167000 36.08 70.0 83 1000.00 2.29 46.99 0 46.99 0/1
chr1 31898234 rs4949402 T C . PASS 0.1452000 0.4496000 0.3591000 0.5596000 0.3313000 0.3500000 36.5 70.0 116 1000.00 14.94 41.38 0 41.38 0/1
chr1 31898279 rs4949403 A C . PASS 0.1452000 0.4496000 0.1994000 0.5596000 0.3252000 0.3167000 36.17 70.0 83 900.91 27.42 34.94 0 34.94 0/1
chr1 31899684 rs10454445 A T . PASS 0.6861000 0.9712000 1.0000000 0.9970000 1.0000000 0.9125000 37.0 69.81 103 1000.00 0.00 100.00 0 100.00 1/1
chr1 31899704 rs10454446 C T . PASS 0.3192000 0.8847000 0.8353000 0.8807000 0.9581000 0.7390000 37.0 70.0 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 31902418 rs10047085 A G . PASS 0.4675000 0.4337000 0.4058000 0.3767000 0.4591000 0.4305000 36.77 70.0 100 1000.00 3.25 53.00 0 53.00 0/1
chr1 31905889 rs3050461,rs5773362 A ACAG . PASS 0.7617000 0.7363000 0.6300000 0.8598000 0.6984000 0.7390000 36.69 69.87 167 1000.00 0.15 94.61 0 95.21 1/1
chr1 31906882 rs11587589 A G . PASS 0.8918000 0.9150000 0.7331000 0.9751000 0.7464000 0.8514000 36.45 70.0 22 871.45 0.00 100.00 0 100.00 1/1
chr1 31907102 rs7417775 A G . PASS 0.3555000 0.8487000 0.5734000 0.9662000 0.6892000 0.6556000 36.71 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 31976727 rs10158294 A G . PASS 0.5908000 0.3948000 0.4891000 0.5219000 0.3967000 0.4914000 36.61 70.0 161 1000.00 2.36 38.51 0 38.51 0/1
chr1 32084904 rs1056526 C T . PASS 0.0794000 0.4654000 0.2371000 0.5636000 0.5450000 0.3528000 36.43 70.0 106 1000.00 0.00 100.00 0 100.00 1/1
chr1 32092525 rs2271933 A G . PASS 0.2753000 0.5086000 0.2440000 0.6332000 0.6155000 0.4397000 36.63 69.8 98 1000.00 0.00 100.00 0 100.00 1/1
chr1 32096265 rs1061770 A G . PASS 0.0794000 0.4741000 0.2480000 0.5676000 0.5440000 0.3568000 36.79 69.82 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 32118160 rs1061392 C A . PASS 0.3457000 0.5202000 0.2460000 0.6252000 0.6074000 0.4571000 36.08 70.0 13 449.60 12.82 92.31 0 100.00 1/1
chr1 32119347 rs67961612 AACAC A . PASS 0.2912000 0.4885000 0.2183000 0.5666000 0.5409000 0.4079000 35.63 70.0 19 680.79 0.00 100.00 0 100.00 1/1
chr1 32119431 rs3817398 T C . PASS 0.2837000 0.4899000 0.2173000 0.5656000 0.5368000 0.4050000 36.43 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 32131163 rs1356803 C G . PASS 0.0741000 0.4640000 0.2262000 0.5577000 0.5429000 0.3474000 36.7 70.0 80 1000.00 0.00 100.00 0 100.00 1/1
chr1 32134491 rs2271929 C G . PASS . . . . . . 35.91 70.0 11 407.83 0.00 100.00 0 100.00 1/1
chr1 32136168 rs2292990 G C . PASS 0.2247000 0.6210000 0.5962000 0.6282000 0.6166000 0.4437000 36.62 70.0 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 32140733 rs2292993 C T . PASS 0.2005000 0.6052000 0.2480000 0.5845000 0.5992000 0.4211000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 32146425 rs11590964 C T . PASS 0.4743000 0.6297000 0.2262000 0.5895000 0.6002000 0.4936000 35.6 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 32146764 rs2297684 C T . PASS 0.4902000 0.6499000 0.2302000 0.6163000 0.6063000 0.5080000 37.0 70.0 15 591.07 0.00 100.00 0 100.00 1/1
chr1 32148571 rs10737358 A G . PASS 0.9985000 0.9986000 1.0000000 1.0000000 1.0000000 0.9994000 36.06 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 32155284 rs2297682 T C . PASS 0.7761000 0.3473000 0.2302000 0.5686000 0.3323000 0.4784000 37.0 70.0 19 369.81 5.74 57.89 0 57.89 0/1
chr1 32155911 rs6425780 G T . PASS 0.6929000 0.3357000 0.1508000 0.5646000 0.3241000 0.4365000 35.67 70.0 61 871.54 2.06 44.26 0 44.26 0/1
chr1 32155929 rs2297681 G A . PASS 0.3313000 0.2680000 0.1984000 0.4791000 0.2229000 0.3043000 36.62 70.0 67 1000.00 7.74 47.76 0 47.76 0/1
chr1 32156722 rs10914467 G A . PASS 0.2587000 0.2824000 0.1240000 0.5328000 0.2638000 0.2909000 37.0 70.0 64 986.23 9.16 45.31 0 45.31 0/1
chr1 32156869 rs10798884 A T . PASS 0.9977000 0.9986000 1.0000000 1.0000000 1.0000000 0.9992000 36.19 70.0 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 32156940 rs2297680 C A . PASS 0.0825000 0.3545000 0.1488000 0.1083000 0.3967000 0.2001000 37.0 70.0 24 225.30 25.00 33.33 0 33.33 0/1
chr1 32157009 rs2297679 G T . PASS 0.1097000 0.3588000 0.1528000 0.1083000 0.4070000 0.2107000 35.91 70.0 57 1000.00 4.78 57.89 0 57.89 0/1
chr1 32157531 rs2297676 T C . PASS 0.3003000 0.2896000 0.1240000 0.5348000 0.2669000 0.3039000 37.0 70.0 37 858.65 11.04 64.86 0 64.86 0/1
chr1 32158304 rs2297675 A G . PASS 0.1165000 0.3602000 0.1548000 0.1123000 0.4029000 0.2131000 36.37 70.0 61 1000.00 1.64 62.30 0 62.30 0/1
chr1 32158374 rs3818788 T C . PASS 0.7663000 0.6816000 0.3581000 0.6491000 0.6718000 0.6304000 36.7 70.0 80 1000.00 0.00 100.00 0 100.00 1/1
chr1 32160918 rs6656079 A G . PASS 0.8139000 0.6686000 0.3611000 0.6521000 0.3906000 0.5875000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 32161675 . A C . PASS . . . . . . 35.29 70.0 45 108.32 160.00 15.56 0 15.56 0/1
chr1 32163950 rs2297674 G C . PASS 0.6097000 0.6383000 0.3056000 0.6541000 0.5982000 0.5591000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 32164206 rs2228550 T G . PASS 0.8200000 0.6599000 0.3472000 0.6541000 0.5971000 0.6258000 36.65 70.0 104 1000.00 0.00 100.00 0 100.00 1/1
chr1 32165495 rs2228552 G T . PASS 0.2610000 0.4553000 0.2708000 0.6481000 0.5665000 0.4273000 36.38 70.0 78 1000.00 0.00 100.00 0 100.00 1/1
chr1 32193572 rs55637976 G A . PASS 0.0000000 0.0000000 0.0000000 0.0020000 0.0000000 0.0003994 36.59 70.0 99 1000.00 2.12 59.60 0 59.60 0/1
chr1 32193647 rs1127100 T C . PASS 0.8321000 0.5159000 0.3492000 0.6531000 0.5706000 0.6040000 36.25 70.0 160 1000.00 0.00 100.00 0 100.00 1/1
chr1 32196647 rs909001 C G . PASS 0.7579000 0.2594000 0.2331000 0.1590000 0.3609000 0.3854000 36.43 70.0 59 650.96 13.24 35.59 0 35.59 0/1
chr1 32203163 rs2271931 C G . PASS 0.0333000 0.1700000 0.1141000 0.1123000 0.3098000 0.1384000 36.5 70.0 42 827.44 0.00 57.14 0 57.14 0/1
chr1 32203218 rs2271932 C A . PASS 0.0204000 0.1542000 0.0794000 0.0716000 0.0798000 0.0727000 36.52 70.0 91 1000.00 2.07 54.95 0 54.95 0/1
chr1 32207581 rs2297600 T G . PASS 0.7542000 0.2651000 0.2341000 0.1630000 0.3456000 0.3832000 36.84 70.0 171 1000.00 1.23 45.03 0 45.03 0/1
chr1 32221913 rs4949223 G A . PASS 0.0333000 0.1715000 0.1121000 0.1133000 0.2996000 0.1364000 35.8 70.0 100 1000.00 6.00 50.00 0 50.00 0/1
chr1 32258805 . AA A . PASS . . . . . . 34.83 70.0 23 126.36 37.68 26.09 1 26.09 0/1
chr1 32258805 . AAG A . PASS . . . . . . 34.83 70.0 29 123.35 57.47 20.69 1 20.69 0/1
chr1 32266026 rs552124 A G . PASS 0.8321000 0.7406000 0.5585000 0.7316000 0.7924000 0.7364000 36.52 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 32280610 rs6664445 T C . PASS 0.6399000 0.6671000 0.7212000 0.6730000 0.7464000 0.6875000 37.0 70.0 74 1000.00 9.75 44.59 0 44.59 0/1
chr1 32314400 rs1536131 A G . PASS 0.7171000 0.3963000 0.6429000 0.5905000 0.7157000 0.6320000 34.91 70.0 69 1000.00 5.80 66.67 0 66.67 0/1
chr1 32502430 rs3738002 T A . PASS 0.0779000 0.2104000 0.2371000 0.0567000 0.3016000 0.1677000 37.0 70.0 22 314.86 14.55 45.45 0 45.45 0/1
chr1 32541440 . G GGT . PASS . . . . . . 34.92 70.0 39 851.55 6.36 64.10 0 66.67 0/1
chr1 32542507 rs4317856 C A . PASS 0.0537000 0.1988000 0.2341000 0.0567000 0.2832000 0.1556000 37.0 70.0 25 264.06 10.67 36.00 0 36.00 0/1
chr1 32557486 rs744455 A G . PASS 0.2927000 0.2320000 0.2351000 0.0596000 0.2812000 0.2236000 35.96 70.0 46 765.77 17.39 50.00 0 50.00 0/1
chr1 32623108 rs41311207 A G . PASS 0.0779000 0.2104000 0.2321000 0.0567000 0.2853000 0.1635000 34.23 70.0 36 366.16 4.70 36.11 0 36.11 0/1
chr1 32625250 rs41308244 G C . PASS 0.0378000 0.2089000 0.2321000 0.0567000 0.2853000 0.1528000 37.0 70.0 17 204.60 5.04 41.18 0 41.18 0/1
chr1 32646186 rs2273164 C G . PASS 0.2307000 0.2305000 0.2312000 0.0567000 0.2853000 0.2065000 37.0 70.0 15 335.93 0.00 66.67 0 66.67 0/1
chr1 32658062 rs79952364 G GGT . PASS 0.9569000 0.7925000 0.9216000 0.6024000 0.8170000 0.8285000 36.68 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 32658447 rs16834916 G A . PASS 0.2307000 0.2305000 0.2312000 0.0567000 0.2853000 0.2065000 35.67 70.0 16 283.29 9.72 56.25 0 56.25 0/1
chr1 32671030 rs2295116 C T . PASS 0.1324000 0.2104000 0.2302000 0.0567000 0.2843000 0.1773000 37.0 70.0 14 301.32 12.70 64.29 0 64.29 0/1
chr1 32671065 rs2295117 A C . PASS 0.2451000 0.2320000 0.2302000 0.0567000 0.2843000 0.2101000 37.0 70.0 12 219.65 26.19 58.33 0 58.33 0/1
chr1 32672783 . CGA CCT . PASS . . . . . . 36.0 70.0 26 374.36 15.38 46.15 0 46.15 0/1
chr1 32672908 rs3903683 T G . PASS 0.3056000 0.2378000 0.2302000 0.0567000 0.2873000 0.2274000 36.76 69.61 92 1000.00 3.28 55.43 0 55.43 0/1
chr1 32678506 rs58238092 C T . PASS 0.3056000 0.2378000 0.2302000 0.0567000 0.2873000 0.2274000 35.0 70.0 13 167.01 12.82 46.15 0 46.15 0/1
chr1 32680551 rs72666785 C T . PASS 0.0000000 0.0000000 0.0000000 0.0050000 0.0000000 0.0009984 37.0 70.0 56 1000.00 6.93 58.93 0 58.93 0/1
chr1 32680606 rs72666786 T C . PASS 0.0000000 0.0014000 0.0000000 0.0099000 0.0010000 0.0023962 37.0 70.0 17 125.21 28.24 29.41 0 29.41 0/1
chr1 32682384 rs479014 G A . PASS 0.0938000 0.0058000 0.0000000 0.0089000 0.0082000 0.0290000 37.0 70.0 26 557.60 1.92 61.54 0 61.54 0/1
chr1 32682962 rs41311189 C A . PASS 0.1331000 0.2089000 0.2302000 0.0567000 0.2873000 0.1779000 37.0 70.0 67 1000.00 6.74 46.27 0 46.27 0/1
chr1 32687777 rs17523023 A G . PASS 0.2360000 0.2305000 0.2302000 0.0567000 0.2873000 0.2081000 37.0 70.0 25 477.07 7.43 56.00 0 56.00 0/1
chr1 32694819 rs72666792 A G . PASS 0.1059000 0.2118000 0.2302000 0.0567000 0.2873000 0.1711000 35.94 70.0 63 1000.00 4.76 53.97 0 53.97 0/1
chr1 32696628 rs72666795 A C . PASS 0.2436000 0.2349000 0.2302000 0.0567000 0.2873000 0.2107000 36.43 70.0 43 699.12 11.96 48.84 0 48.84 0/1
chr1 32713199 rs2291063 A G . PASS 0.1263000 0.2176000 0.2550000 0.0328000 0.2393000 0.1681000 36.48 69.13 59 738.66 0.74 38.98 0 38.98 0/1
chr1 33060834 rs11327743 AT A . PASS 0.1967000 0.0591000 0.1071000 0.1064000 0.0532000 0.1134000 35.36 70.0 45 705.45 10.71 48.89 0 48.89 0/1
chr1 33065947 rs704886 G C . PASS 1.0000000 1.0000000 1.0000000 0.9990000 1.0000000 0.9998000 36.58 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 33117071 rs583114 T G . PASS 0.8767000 0.9841000 1.0000000 1.0000000 1.0000000 0.9653000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 33133968 rs2762904 T C . PASS 0.8873000 0.9841000 1.0000000 1.0000000 0.9990000 0.9679000 36.29 69.6 68 1000.00 0.00 100.00 0 100.00 1/1
chr1 33134774 rs359955 A C . PASS 0.1914000 0.6383000 0.7679000 0.7515000 0.7669000 0.5942000 36.29 70.0 34 559.14 23.53 50.00 0 50.00 0/1
chr1 33134989 rs359956 A G . PASS 0.4902000 0.7435000 0.8690000 0.9632000 0.9223000 0.7810000 37.0 70.0 20 799.93 0.00 100.00 0 100.00 1/1
chr1 33138516 rs607202 A C . PASS 0.8873000 0.9841000 1.0000000 1.0000000 1.0000000 0.9681000 36.52 70.0 25 992.61 0.00 100.00 0 100.00 1/1
chr1 33160878 rs360042 C T . PASS 0.7829000 0.7738000 0.8681000 0.9652000 0.9223000 0.8626000 36.42 70.0 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 33161212 rs360041 T C . PASS 0.7829000 0.7738000 0.8681000 0.9652000 0.9223000 0.8626000 37.0 70.0 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 33199367 rs699006 C G . PASS 0.4652000 0.6700000 0.5248000 0.5696000 0.5532000 0.5437000 36.1 69.5 112 1000.00 8.21 35.71 0 35.71 0/1
chr1 33233323 rs360523 A G . PASS 0.9402000 0.9885000 1.0000000 1.0000000 1.0000000 0.9826000 36.7 69.5 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 33235626 rs3737995 G A . PASS 0.0333000 0.4380000 0.4484000 0.3648000 0.3834000 0.3079000 37.0 70.0 70 1000.00 0.00 57.14 0 57.14 0/1
chr1 33235651 rs12730560 A G . PASS 0.2738000 0.2291000 0.0020000 0.1342000 0.0757000 0.1462000 37.0 70.0 62 908.71 7.89 43.55 0 43.55 0/1
chr1 33237885 . A C . PASS . . . . . . 32.2 70.0 71 304.19 146.48 21.13 0 21.13 0/1
chr1 33237889 . G C . PASS . . . . . . 34.0 70.0 72 522.02 141.67 27.78 0 27.78 0/1
chr1 33245802 rs699005 C G . PASS 0.0998000 0.1787000 0.0010000 0.1074000 0.0746000 0.0875000 36.74 70.0 83 1000.00 4.56 55.42 0 55.42 0/1
chr1 33256884 rs1765223 C A . PASS 0.3041000 0.3242000 0.2272000 0.3191000 0.2873000 0.2911000 37.0 70.0 23 228.32 4.35 34.78 0 34.78 0/1
chr1 33276424 rs4951787 G A . PASS 0.9425000 0.9942000 1.0000000 1.0000000 1.0000000 0.9840000 36.23 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 33282775 rs72654020 C A . PASS 0.0938000 0.1772000 0.0010000 0.1074000 0.0746000 0.0857000 35.82 70.0 93 1000.00 2.66 54.84 0 54.84 0/1
chr1 33293748 rs10753266 T C . PASS 0.9425000 0.9942000 1.0000000 1.0000000 1.0000000 0.9840000 37.0 70.0 20 799.93 0.00 100.00 0 100.00 1/1
chr1 33318634 rs785274 G A . PASS 0.9425000 0.9942000 1.0000000 1.0000000 1.0000000 0.9840000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 33330432 rs1284368 A G . PASS 0.9425000 0.9942000 1.0000000 1.0000000 1.0000000 0.9840000 36.5 70.0 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 33360343 rs1053522 G A . PASS 0.0303000 0.1499000 0.0000000 0.0547000 0.0583000 0.0511000 37.0 70.0 16 128.22 25.00 31.25 0 31.25 0/1
chr1 33366704 rs114172030 T A . PASS 0.0295000 0.1499000 0.0000000 0.0547000 0.0573000 0.0507000 34.0 70.0 13 79.32 0.00 30.77 0 30.77 0/1
chr1 33402515 rs35462688 C T . PASS 0.0121000 0.1571000 0.0000000 0.0765000 0.0736000 0.0547000 36.67 70.0 83 1000.00 6.76 43.37 0 43.37 0/1
chr1 33402542 rs35756506 G C . PASS 0.0151000 0.1585000 0.0000000 0.0765000 0.0736000 0.0557000 37.0 70.0 65 853.76 0.00 40.00 0 40.00 0/1
chr1 33408138 rs1149128 T G . PASS 0.2890000 0.1859000 0.0000000 0.0805000 0.0736000 0.1326000 37.0 70.0 10 58.59 26.67 30.00 0 30.00 0/1
chr1 33409551 rs194644 C T . PASS 0.4304000 0.4524000 0.3284000 0.3449000 0.2986000 0.3700000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 33409693 rs194645 G A . PASS 0.0265000 0.2378000 0.2748000 0.2505000 0.2198000 0.1885000 36.64 70.0 66 1000.00 6.06 50.00 0 50.00 0/1
chr1 33415409 rs11408991 G GT . PASS 0.3638000 0.2032000 0.0000000 0.0924000 0.0746000 0.1573000 35.8 70.0 20 297.44 10.00 50.00 0 50.00 0/1
chr1 33415466 rs7545739 T C . PASS 0.3638000 0.2032000 0.0000000 0.0924000 0.0746000 0.1573000 37.0 70.0 11 226.81 7.79 63.64 0 63.64 0/1
chr1 33416907 rs194647 G A . PASS 0.0265000 0.2378000 0.2738000 0.2515000 0.2188000 0.1883000 36.01 69.86 281 1000.00 0.28 51.60 0 51.60 0/1
chr1 33445837 rs16835229 C T . PASS 0.2897000 0.1916000 0.0020000 0.1044000 0.0726000 0.1386000 37.0 70.0 12 140.26 3.33 41.67 0 41.67 0/1
chr1 33476292 rs74066439 A G . PASS . . . . . . 32.2 69.8 27 71.09 34.07 18.52 0 18.52 0/1
chr1 33476353 rs66599471 C T . PASS . . . . . . 35.5 69.75 71 75.98 26.41 11.27 0 11.27 0/1
chr1 33547768 rs1871322 T C . PASS 0.3449000 0.3444000 0.2768000 0.3042000 0.3057000 0.3153000 35.29 70.0 11 214.80 18.18 63.64 0 63.64 0/1
chr1 33560338 rs804428 A G . PASS 0.9977000 0.9827000 1.0000000 0.9602000 0.9980000 0.9886000 37.0 70.0 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 33642152 rs643402 C T . PASS 0.7080000 0.7939000 0.7956000 0.7545000 0.7198000 0.7492000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 33646950 rs622407 A G . PASS 0.7095000 0.7954000 0.7946000 0.7545000 0.7198000 0.7496000 36.87 70.0 92 1000.00 0.00 100.00 0 100.00 1/1
chr1 33741587 rs6692274 C T . PASS 0.1104000 0.0115000 0.0030000 0.0408000 0.0174000 0.0429000 37.0 70.0 12 56.72 66.67 25.00 0 25.00 0/1
chr1 33742228 rs4475712 T C . PASS 0.9713000 0.9986000 1.0000000 1.0000000 1.0000000 0.9922000 36.24 69.75 79 1000.00 0.00 100.00 0 100.00 1/1
chr1 33751103 rs7526544 T A . PASS 0.5764000 0.3357000 0.3204000 0.4205000 0.5573000 0.4565000 37.0 68.67 37 478.56 1.44 40.54 0 40.54 0/1
chr1 33760743 rs4641276 T C . PASS 0.9713000 0.8357000 0.7589000 0.7584000 0.7168000 0.8173000 36.55 70.0 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 33778063 rs60103055 G A . PASS 0.1316000 0.0144000 0.1567000 0.0467000 0.0307000 0.0837000 35.29 67.14 26 169.65 6.59 26.92 0 26.92 0/1
chr1 33778226 rs12563102 G A . PASS 0.7057000 0.2205000 0.2530000 0.2803000 0.3497000 0.3924000 37.0 70.0 25 518.83 8.00 60.00 0 60.00 0/1
chr1 33778591 rs6664593 T C . PASS 0.8858000 0.4914000 0.7510000 0.6412000 0.7168000 0.7218000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 33794416 rs72658237 T C . PASS 0.0076000 0.0720000 0.2708000 0.1153000 0.1084000 0.1108000 37.0 70.0 21 322.03 5.71 47.62 0 47.62 0/1
chr1 33794853 rs7551448 A G . PASS 0.9932000 0.9986000 1.0000000 1.0000000 1.0000000 0.9980000 36.17 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 33796891 rs41265891 C A . PASS 0.0076000 0.0720000 0.2708000 0.1153000 0.1084000 0.1108000 37.0 70.0 14 88.33 21.43 28.57 0 28.57 0/1
chr1 33798126 rs72658242 T G . PASS 0.0030000 0.0389000 0.0000000 0.0606000 0.0051000 0.0193690 37.0 70.0 12 177.88 33.33 50.00 0 50.00 0/1
chr1 33820033 rs16835408 C T . PASS 0.0083000 0.0720000 0.2927000 0.1183000 0.1145000 0.1172000 36.25 70.0 136 1000.00 1.47 58.82 0 58.82 0/1
chr1 33832865 rs6425816 A G . PASS 0.8843000 0.4856000 0.7708000 0.6322000 0.7444000 0.7282000 36.76 70.0 98 1000.00 0.00 100.00 0 100.00 1/1
chr1 33834014 rs72658266 G T . PASS 0.0068000 0.0735000 0.2927000 0.1173000 0.1145000 0.1168000 35.0 70.0 10 171.90 0.00 60.00 0 60.00 0/1
chr1 33954352 rs3795418 A G . PASS 0.8540000 0.6254000 0.7381000 0.7366000 0.7434000 0.7538000 35.86 70.0 21 817.67 0.00 100.00 0 100.00 1/1
chr1 33957152 rs4403594 T G . PASS 1.0000000 1.0000000 1.0000000 0.9960000 1.0000000 0.9992000 36.09 70.0 79 1000.00 0.00 100.00 0 100.00 1/1
chr1 33960062 rs9943259 A G . PASS 0.8495000 0.6239000 0.7381000 0.7376000 0.7434000 0.7526000 36.86 70.0 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 33979880 rs11333218 CT C . PASS 0.4713000 0.3415000 0.5179000 0.4503000 0.4642000 0.4571000 33.89 69.29 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 33985353 rs2641959 C G . PASS 0.7103000 0.5231000 0.7341000 0.5666000 0.6247000 0.6436000 36.4 69.75 80 1000.00 0.00 100.00 0 100.00 1/1
chr1 34023217 . G GACACAC . PASS . . . . . . 35.86 70.0 19 421.77 12.87 47.37 0 68.42 0/1
chr1 34024928 rs16835591 T C . PASS 0.0091000 0.0893000 0.2192000 0.1670000 0.1564000 0.1230000 36.9 69.83 120 1000.00 0.00 100.00 0 100.00 1/1
chr1 34025030 rs16835593 A G . PASS 0.0091000 0.0893000 0.2192000 0.1531000 0.1554000 0.1200000 36.75 70.0 97 1000.00 0.00 100.00 0 100.00 1/1
chr1 34042810 rs1389560 A G . PASS 0.4168000 0.2320000 0.2649000 0.3439000 0.4325000 0.3490000 37.0 70.0 18 716.39 0.00 100.00 0 100.00 1/1
chr1 34042834 rs16835628 C A . PASS 0.0083000 0.0937000 0.2222000 0.1620000 0.1319000 0.1182000 36.48 70.0 23 909.07 0.00 100.00 0 100.00 1/1
chr1 34043169 rs11291100 TC T . PASS 1.0000000 1.0000000 0.9990000 1.0000000 1.0000000 0.9998000 36.32 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 34052305 rs12727575 C T . PASS 0.1150000 0.1700000 0.2054000 0.3310000 0.1933000 0.1995000 37.0 70.0 19 369.82 12.44 57.89 0 57.89 0/1
chr1 34052605 rs7526990 A G . PASS 0.7239000 0.6556000 0.7589000 0.6302000 0.6963000 0.6973000 37.0 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 34076550 rs6672528 T C . PASS 0.0575000 0.0548000 0.1359000 0.1342000 0.1135000 0.0992000 37.0 70.0 19 202.74 25.56 36.84 0 36.84 0/1
chr1 34189917 rs519370 C T . PASS 0.7602000 0.8156000 0.9940000 0.6372000 0.7577000 0.7897000 37.0 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 34189957 rs11346874 AG A . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 34.92 70.0 12 431.18 0.00 100.00 0 100.00 1/1
chr1 34285342 rs17342512 G A . PASS 0.5840000 0.6441000 0.6627000 0.5278000 0.6084000 0.6016000 36.53 70.0 77 1000.00 0.00 100.00 0 100.00 1/1
chr1 34285381 rs11578857 C T . PASS 0.5840000 0.6455000 0.6627000 0.5278000 0.6063000 0.6014000 34.95 70.0 82 1000.00 0.00 100.00 0 100.00 1/1
chr1 34285995 rs3795414 G A . PASS 0.2005000 0.6081000 0.6161000 0.5219000 0.5971000 0.4826000 35.62 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 34286166 rs5773432 CA C . PASS . . . . . . 33.26 69.47 41 1000.00 5.39 92.68 0 92.68 0/1
chr1 34286189 rs3843294 A C . PASS . . . . . . 34.39 70.0 30 947.23 13.33 90.00 0 93.33 1/1
chr1 34314519 rs16835990 C T . PASS 0.0340000 0.1873000 0.3155000 0.1183000 0.3323000 0.1871000 37.0 68.82 27 596.36 4.79 62.96 0 62.96 0/1
chr1 34329897 rs911218 T C . PASS 0.9985000 0.9870000 1.0000000 0.9553000 0.9969000 0.9882000 36.43 70.0 85 1000.00 1.12 98.82 0 98.82 1/1
chr1 34330067 rs10379 A C . PASS 0.9917000 0.9063000 0.9008000 0.7475000 0.9335000 0.9012000 36.6 70.0 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 34624938 rs116365434 C G . PASS 0.0946000 0.1499000 0.0923000 0.0865000 0.0593000 0.0933000 36.25 70.0 78 1000.00 13.62 41.03 0 41.03 0/1
chr1 34624939 rs57364092 CA C . PASS 0.6581000 0.4611000 0.3958000 0.6501000 0.5429000 0.5539000 35.66 70.0 79 1000.00 1.23 98.73 1 100.00 1/1
chr1 34624939 . CAC CG . PASS . . . . . . . . 77 1000.00 4.33 54.55 1 100.00 0/1
chr1 34624941 rs58241527 C G . PASS 0.1936000 0.2478000 0.2153000 0.4115000 0.3088000 0.2718000 35.24 70.0 75 1000.00 4.23 54.67 1 54.67 0/1
chr1 34684463 rs705207 G A . PASS 0.7481000 0.7896000 0.7917000 0.7525000 0.7894000 0.7716000 37.0 70.0 16 632.84 0.00 100.00 0 100.00 1/1
chr1 35251219 rs41266429 C A . PASS 0.0711000 0.1787000 0.0347000 0.1412000 0.0491000 0.0885000 36.33 70.0 30 612.94 8.89 60.00 0 60.00 0/1
chr1 35251229 rs476220 G A . PASS 0.6551000 0.3890000 0.1716000 0.4761000 0.2403000 0.4040000 36.25 70.0 27 542.58 8.33 59.26 0 59.26 0/1
chr1 35259961 rs1764390 A G . PASS 0.8533000 0.5130000 0.4841000 0.6481000 0.4990000 0.6214000 37.0 70.0 79 1000.00 0.00 100.00 0 100.00 1/1
chr1 35260202 rs41266431 G A . PASS 0.0091000 0.1110000 0.0000000 0.1421000 0.0399000 0.0541000 37.0 70.0 61 1000.00 8.94 54.10 0 54.10 0/1
chr1 35269895 rs512161 A G . PASS 0.6278000 0.3631000 0.4752000 0.4404000 0.3599000 0.4704000 37.0 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 35332926 rs1001616 G C . PASS 0.0590000 0.4654000 0.8006000 0.3161000 0.5010000 0.4026000 37.0 70.0 15 294.16 26.67 60.00 0 60.00 0/1
chr1 35350573 rs34565935 CT C . PASS 0.0212000 0.0591000 0.0060000 0.1233000 0.1564000 0.0703000 35.75 70.0 41 644.96 12.44 48.78 0 48.78 0/1
chr1 35351052 rs141871603 C A . PASS 0.0000000 0.0029000 0.0000000 0.0129000 0.0041000 0.0037939 36.33 70.0 45 567.79 15.56 40.00 0 40.00 0/1
chr1 35561510 rs2101973 G A . PASS 0.2496000 0.6254000 0.3522000 0.8936000 0.7914000 0.5575000 36.17 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 35562965 rs2971408 G A . PASS 0.8018000 0.7392000 0.7411000 0.9215000 0.9254000 0.8291000 36.53 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 35563206 rs6658571 C G . PASS 0.3623000 0.6441000 0.3522000 0.8946000 0.7914000 0.5901000 37.0 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 35576145 rs2935955 C T . PASS 0.8533000 0.7493000 0.7391000 0.9215000 0.9254000 0.8436000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 35835937 . C A . PASS . . . . . . 27.0 70.0 30 63.67 146.67 20.00 0 20.00 0/1
chr1 35925861 rs2819002 C A . PASS 0.9977000 0.9755000 1.0000000 0.9573000 0.9959000 0.9866000 35.91 70.0 22 855.29 0.00 100.00 0 100.00 1/1
chr1 36203715 rs67465242 AT A . PASS . . . . . . 35.91 70.0 11 360.68 12.73 90.91 1 100.00 1/1
chr1 36203715 . ATAT A . PASS . . . . . . 35.5 70.0 11 247.01 22.73 72.73 1 100.00 0/1
chr1 36203715 . ATAT AAA . PASS . . . . . . . . 11 247.01 27.27 18.18 1 100.00 0/1
chr1 36203716 . TA T . PASS . . . . . . 35.5 70.0 11 247.01 22.73 72.73 1 72.73 0/1
chr1 36203717 rs376763747 AT A . PASS . . . . . . 34.82 70.0 11 323.69 22.73 72.73 1 100.00 0/1
chr1 36203718 rs2336141 T A . PASS . . . . . . 34.82 70.0 11 323.69 60.61 27.27 1 100.00 0/1
chr1 36203719 rs3838997 AT A . PASS . . . . . . 36.45 70.0 11 342.80 72.73 18.18 0 100.00 0/1
chr1 36203720 rs201555109 T A . PASS . . . . . . 36.45 70.0 11 342.80 16.16 81.82 0 100.00 0/1
chr1 36213712 rs516992 G T . PASS 0.9115000 0.9928000 1.0000000 1.0000000 1.0000000 0.9756000 37.0 70.0 20 795.78 0.00 100.00 0 100.00 1/1
chr1 36216835 rs535638 C T . PASS 0.2322000 0.5605000 0.2599000 0.8638000 0.7965000 0.5204000 37.0 70.0 21 841.70 0.00 100.00 0 100.00 1/1
chr1 36307412 rs5773512,rs10615800 CAT C . PASS 0.5537000 0.7334000 0.7589000 0.6789000 0.7004000 0.6737000 36.68 70.0 21 604.87 8.02 90.48 0 90.48 0/1
chr1 36316571 rs4652895 A C . PASS 0.1407000 0.5375000 0.2530000 0.8539000 0.8037000 0.4910000 36.03 69.68 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 36367581 rs72661614 C T . PASS 0.0000000 0.0000000 0.0000000 0.0040000 0.0000000 0.0007987 37.0 70.0 49 780.76 5.86 46.94 0 46.94 0/1
chr1 36397122 . C T . PASS . . . . . . 37.0 70.0 26 98.12 29.23 19.23 0 19.23 0/1
chr1 36553673 rs399393 A G . PASS 0.9123000 0.9395000 0.9990000 0.9115000 0.9397000 0.9387000 36.77 69.81 106 1000.00 0.00 100.00 0 100.00 1/1
chr1 36554442 rs11263852 G C . PASS 0.4788000 0.6225000 0.5198000 0.9006000 0.8793000 0.6699000 37.0 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 36563158 rs3738360 C A . PASS 0.4365000 0.6110000 0.5218000 0.8976000 0.8763000 0.6564000 36.14 69.52 44 1000.00 0.22 95.45 0 95.45 1/1
chr1 36565584 rs274753 C G . PASS 0.9100000 0.9222000 0.9990000 0.8658000 0.9151000 0.9217000 36.2 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 36565617 rs274754 G A . PASS 0.3268000 0.5202000 0.2609000 0.7753000 0.5941000 0.4826000 36.8 70.0 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 36602943 rs2231318 C T . PASS 0.8533000 0.8098000 0.7063000 0.7406000 0.6247000 0.7504000 36.38 70.0 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 36616336 . GTG GCA . PASS . . . . . . 36.77 69.69 131 1000.00 1.64 41.22 0 100.00 0/1
chr1 36616336 . GTG GCG . PASS . . . . . . 36.77 69.69 131 1000.00 1.15 58.78 0 100.00 0/1
chr1 36641729 rs2296263 C T . PASS 0.3238000 0.4467000 0.5020000 0.5567000 0.4438000 0.4469000 36.1 70.0 174 1000.00 0.00 100.00 0 100.00 1/1
chr1 36642420 rs475591 T C . PASS 0.8896000 0.7810000 0.9137000 0.5755000 0.5521000 0.7504000 36.59 70.0 118 1000.00 0.00 100.00 0 100.00 1/1
chr1 36643700 rs141305015,rs3045695 GAGA G . PASS 0.0030000 0.0836000 0.1964000 0.0497000 0.0133000 0.0645000 35.54 69.43 59 1000.00 0.29 59.32 0 59.32 0/1
chr1 36644649 rs201674321 T C . PASS 0.0000000 0.0000000 0.0000000 0.0050000 0.0041000 0.0017971 35.91 70.0 28 330.71 20.78 39.29 0 39.29 0/1
chr1 36752433 rs6425977 C T . PASS 0.5197000 0.8602000 0.9484000 0.8837000 0.8742000 0.7955000 36.67 69.92 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 36762396 rs1566589 C T . PASS 0.7617000 0.9741000 0.9702000 1.0000000 0.9928000 0.9261000 36.35 69.46 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 36773405 rs35343437 T G . PASS 0.1241000 0.5620000 0.7192000 0.4443000 0.3916000 0.4211000 36.66 70.0 106 1000.00 0.00 100.00 0 100.00 1/1
chr1 36773819 rs11263871 C G . PASS 0.7617000 0.9741000 0.9742000 1.0000000 0.9939000 0.9271000 36.14 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 36785270 rs2282431 C T . PASS 0.3253000 0.4654000 0.6637000 0.2406000 0.2219000 0.3756000 37.0 70.0 29 339.71 5.64 37.93 0 37.93 0/1
chr1 36788356 rs7536394 A G . PASS 0.9372000 0.9856000 0.9712000 1.0000000 0.9928000 0.9742000 37.0 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 36807481 rs3795498 C T . PASS 0.1672000 0.1369000 0.1429000 0.2336000 0.2065000 0.1791000 36.7 70.0 84 1000.00 7.86 47.62 0 47.62 0/1
chr1 36810011 rs4653181 G A . PASS 0.0250000 0.3761000 0.3194000 0.2435000 0.2198000 0.2149000 37.0 70.0 10 104.51 0.00 40.00 0 40.00 0/1
chr1 36884527 . C CA . PASS . . . . . . 37.0 70.0 12 249.98 7.14 58.33 0 66.67 0/1
chr1 36884530 rs72663495 G A . PASS . . . . . . 37.0 70.0 12 265.57 0.00 66.67 0 66.67 0/1
chr1 36886117 rs2275477 C T . PASS 0.3200000 0.1542000 0.2599000 0.2068000 0.2730000 0.2530000 36.68 70.0 68 1000.00 2.32 55.88 0 55.88 0/1
chr1 36887702 rs2236565 C T . PASS 0.8351000 0.5288000 0.6845000 0.6282000 0.7628000 0.7067000 36.37 70.0 39 631.77 3.51 48.72 0 48.72 0/1
chr1 36898067 rs34409118 T C . PASS 0.1604000 0.1369000 0.2599000 0.2048000 0.2730000 0.2081000 36.43 70.0 57 661.14 14.04 36.84 0 36.84 0/1
chr1 37335458 rs577094 A G . PASS 0.8207000 0.9438000 0.9871000 0.9254000 0.9499000 0.9175000 36.08 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 37335485 rs509284 A G . PASS 0.8207000 0.9438000 0.9871000 0.9254000 0.9499000 0.9175000 36.54 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 37335494 rs577813 G T . PASS 0.8207000 0.9438000 0.9871000 0.9254000 0.9499000 0.9175000 35.8 70.0 20 771.75 0.00 100.00 0 100.00 1/1
chr1 37513503 rs592520 G C . PASS 0.6604000 0.3862000 0.5734000 0.4861000 0.5706000 0.5523000 36.17 69.31 92 873.79 19.42 31.52 0 31.52 0/1
chr1 37948212 rs215205 C G . PASS 0.5159000 0.1988000 0.0585000 0.3002000 0.5031000 0.3341000 37.0 70.0 34 487.60 3.92 44.12 0 44.12 0/1
chr1 37959450 rs215210 T C . PASS 0.4864000 0.8357000 0.9038000 0.8350000 0.6994000 0.7304000 37.0 70.0 21 841.70 0.00 100.00 0 100.00 1/1
chr1 37959470 rs215211 C G . PASS 0.5492000 0.8415000 0.9038000 0.8370000 0.6994000 0.7482000 37.0 69.93 15 586.92 0.00 100.00 0 100.00 1/1
chr1 37967649 rs41306601 C T . PASS 0.0045000 0.0677000 0.0000000 0.0865000 0.0184000 0.0315000 37.0 70.0 35 822.90 4.22 65.71 0 65.71 0/1
chr1 37967707 rs145062262,rs57320145 ATTGACAGAGAAGATACATG A . PASS 0.3525000 0.4741000 0.4980000 0.4771000 0.4305000 0.4389000 34.31 70.0 83 1000.00 0.00 100.00 0 100.00 1/1
chr1 37967774 rs215864 C A . PASS 0.5257000 0.8429000 0.9018000 0.8370000 0.6513000 0.7324000 37.0 70.0 68 1000.00 0.00 100.00 0 100.00 1/1
chr1 38006359 rs2174769 A G . PASS 0.4183000 0.8386000 0.9702000 0.8340000 0.6789000 0.7220000 36.53 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 38019747 rs2273013 C T . PASS 0.0643000 0.2896000 0.3938000 0.2177000 0.2515000 0.2292000 37.0 70.0 87 1000.00 9.26 42.53 0 42.53 0/1
chr1 38022452 rs2273014 C A . PASS 0.1952000 0.5562000 0.5675000 0.4682000 0.3262000 0.4006000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 38023316 rs11749 C T . PASS 0.0681000 0.2046000 0.3502000 0.2535000 0.1871000 0.2043000 36.6 70.0 91 1000.00 5.57 65.93 0 65.93 0/1
chr1 38030696 rs6619 T C . PASS 0.2247000 0.5620000 0.5694000 0.4692000 0.3323000 0.4109000 36.57 70.0 53 965.56 4.45 52.83 0 52.83 0/1
chr1 38046920 rs2360010 G T . PASS 0.4448000 0.8415000 0.9712000 0.8380000 0.6738000 0.7294000 36.0 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 38049373 rs3753372 C T . PASS 0.2254000 0.5634000 0.5694000 0.4692000 0.3313000 0.4111000 33.4 70.0 24 276.97 18.33 41.67 0 41.67 0/1
chr1 38049552 rs6426024 C G . PASS 0.4523000 0.8444000 0.9712000 0.8340000 0.6728000 0.7308000 36.54 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 38078300 rs4652964 A G . PASS 0.2148000 0.5937000 0.6766000 0.5308000 0.4448000 0.4687000 37.0 70.0 10 229.82 0.00 70.00 0 70.00 0/1
chr1 38078630 rs55852308 A T . PASS 0.0666000 0.2118000 0.2808000 0.2545000 0.1973000 0.1931000 35.8 70.0 57 1000.00 5.96 52.63 0 52.63 0/1
chr1 38082121 . TGC TAT . PASS . . . . . . 35.62 70.0 69 872.38 1.45 37.68 0 37.68 0/1
chr1 38148765 rs684260 A G . PASS 0.8343000 0.7954000 0.9514000 0.7654000 0.7822000 0.8285000 35.82 69.67 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 38149193 rs686083 C T . PASS 0.3911000 0.1614000 0.0288000 0.2694000 0.1483000 0.2145000 35.5 70.0 17 238.51 20.59 47.06 0 47.06 0/1
chr1 38155265 rs586252 G C . PASS 0.3911000 0.1614000 0.0288000 0.2694000 0.1483000 0.2145000 36.25 70.0 32 523.38 0.00 50.00 0 50.00 0/1
chr1 38156190 rs679742 C G . PASS 0.2148000 0.1383000 0.0288000 0.2684000 0.1421000 0.1633000 37.0 70.0 15 210.62 1.90 46.67 0 46.67 0/1
chr1 38161694 rs615530 A G . PASS 0.6891000 0.5245000 0.7034000 0.4414000 0.5000000 0.5825000 35.63 70.0 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 38164724 rs557290 C G . PASS 0.5325000 0.5058000 0.7034000 0.4404000 0.5000000 0.5383000 36.56 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 38166022 rs513826 T C . PASS 0.5325000 0.5058000 0.7034000 0.4404000 0.5000000 0.5383000 34.82 68.18 11 399.97 0.00 100.00 0 100.00 1/1
chr1 38167361 rs34342214 A C . PASS . . . . . . 34.0 70.0 13 79.33 3.85 30.77 0 30.77 0/1
chr1 38173983 rs368589115,rs145033890 TTTC T . PASS 0.2799000 0.3660000 0.6746000 0.1750000 0.3517000 0.3642000 37.0 70.0 70 958.61 4.76 42.86 0 44.29 0/1
chr1 38184316 rs609437 T C . PASS 0.2352000 0.1369000 0.0288000 0.2644000 0.1493000 0.1691000 36.71 69.52 101 1000.00 3.02 41.58 0 41.58 0/1
chr1 38185409 rs900677 C G . PASS 0.1770000 0.0620000 0.0278000 0.1093000 0.0399000 0.0907000 37.0 70.0 17 246.37 8.82 47.06 0 47.06 0/1
chr1 38185647 rs2170809 G A . PASS 0.0567000 0.0476000 0.0278000 0.1083000 0.0337000 0.0555000 36.67 70.0 78 1000.00 3.42 46.15 0 46.15 0/1
chr1 38185723 rs6670599 C T . PASS 0.0174000 0.0447000 0.0278000 0.1083000 0.0337000 0.0447000 36.45 70.0 88 1000.00 2.27 50.00 0 50.00 0/1
chr1 38186206 rs12726343 C G . PASS 0.0174000 0.0447000 0.0278000 0.1083000 0.0337000 0.0447000 36.56 70.0 49 931.68 1.36 55.10 0 55.10 0/1
chr1 38187173 rs17511088 G A . PASS 0.0174000 0.0447000 0.0278000 0.1083000 0.0337000 0.0447000 34.6 70.0 10 134.27 0.00 50.00 0 50.00 0/1
chr1 38187447 rs579908 A G . PASS 0.3048000 0.1556000 0.0288000 0.2634000 0.1431000 0.1887000 36.25 70.0 62 1000.00 0.20 51.61 0 51.61 0/1
chr1 38187453 rs33970734 G A . PASS 0.0174000 0.0447000 0.0278000 0.1083000 0.0337000 0.0447000 36.25 70.0 60 1000.00 3.75 53.33 0 53.33 0/1
chr1 38188697 rs16824420 T C . PASS 0.0598000 0.0490000 0.0278000 0.1083000 0.0337000 0.0565000 37.0 70.0 30 462.02 20.95 46.67 0 46.67 0/1
chr1 38188740 rs12405650 C T . PASS 0.0174000 0.0476000 0.0278000 0.1083000 0.0337000 0.0451000 36.6 70.0 59 1000.00 8.47 50.85 0 50.85 0/1
chr1 38188768 rs17464871 C T . PASS 0.0174000 0.0447000 0.0278000 0.1083000 0.0337000 0.0447000 35.91 70.0 62 1000.00 9.48 53.23 0 53.23 0/1
chr1 38188787 rs17511304 A G . PASS 0.0174000 0.0447000 0.0278000 0.1083000 0.0337000 0.0447000 36.67 70.0 62 1000.00 5.56 58.06 0 58.06 0/1
chr1 38188880 rs11582856 C T . PASS 0.0174000 0.0447000 0.0278000 0.1083000 0.0337000 0.0447000 36.08 70.0 27 417.27 2.28 48.15 0 48.15 0/1
chr1 38188934 rs11577529 T C . PASS 0.0174000 0.0447000 0.0278000 0.1083000 0.0337000 0.0447000 37.0 70.0 42 634.75 0.50 45.24 0 45.24 0/1
chr1 38219761 rs681890 C T . PASS 0.3298000 0.4006000 0.4206000 0.3380000 0.4131000 0.3758000 37.0 70.0 12 182.03 0.00 50.00 0 50.00 0/1
chr1 38220109 rs11584465 G T . PASS 0.0106000 0.2507000 0.1746000 0.2584000 0.1830000 0.1603000 37.0 67.78 18 285.13 11.11 50.00 0 50.00 0/1
chr1 38226964 rs55695553 C T . PASS 0.1157000 0.2493000 0.2212000 0.1183000 0.2648000 0.1851000 36.48 68.26 41 792.85 0.85 56.10 0 56.10 0/1
chr1 38227086 rs4653328 A T . PASS 0.4402000 0.3012000 0.4831000 0.2833000 0.2106000 0.3532000 36.35 70.0 105 1000.00 7.46 35.24 0 35.24 0/1
chr1 38228216 rs605359 A G . PASS 0.8903000 0.8963000 0.9960000 0.8161000 0.8599000 0.8916000 35.76 70.0 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 38301220 rs28378413 G A . PASS 0.0076000 0.2752000 0.2063000 0.2753000 0.1881000 0.1737000 37.0 70.0 11 226.81 0.00 63.64 0 63.64 0/1
chr1 38301250 rs3912368 A G . PASS 0.2950000 0.6023000 0.4792000 0.7266000 0.6155000 0.5240000 37.0 70.0 23 441.32 17.39 56.52 0 56.52 0/1
chr1 38301476 rs3762359 G A . PASS 0.2950000 0.5980000 0.4802000 0.7247000 0.6155000 0.5232000 37.0 70.0 44 795.81 11.46 52.27 0 52.27 0/1
chr1 38327935 rs140670679 CAG C . PASS 0.0076000 0.2752000 0.2054000 0.2753000 0.1861000 0.1731000 36.7 70.0 39 640.26 6.92 51.28 0 51.28 0/1
chr1 38327982 rs3843 G T . PASS 0.3011000 0.6009000 0.4802000 0.7266000 0.6155000 0.5256000 35.91 70.0 73 1000.00 6.56 45.21 0 45.21 0/1
chr1 38332057 . TTC T . PASS . . . . . . 35.23 70.0 47 1000.00 8.95 82.98 0 82.98 0/1
chr1 38332078 rs4653333 T A . PASS . . . . . . 35.94 70.0 48 1000.00 18.41 64.58 0 70.83 0/1
chr1 38334316 . TTC TAA . PASS . . . . . . 36.18 69.09 51 660.05 0.53 43.14 0 43.14 0/1
chr1 38338795 rs11488569 A G . PASS 0.2980000 0.5994000 0.4752000 0.7266000 0.6155000 0.5236000 37.0 70.0 34 533.52 5.15 47.06 0 47.06 0/1
chr1 38345896 rs2306427 A C . PASS 0.2995000 0.5951000 0.4752000 0.7247000 0.6155000 0.5230000 37.0 70.0 47 532.01 33.79 36.17 0 36.17 0/1
chr1 38397341 rs34655914 G A . PASS 0.0840000 0.4366000 0.3185000 0.5825000 0.4673000 0.3550000 35.8 70.0 60 1000.00 3.33 50.00 0 50.00 0/1
chr1 38397369 rs35267671 C T . PASS 0.0840000 0.4366000 0.3185000 0.5835000 0.4673000 0.3552000 37.0 70.0 75 1000.00 17.42 42.67 0 42.67 0/1
chr1 38411350 rs11485595 C T . PASS 0.0726000 0.3530000 0.3155000 0.4254000 0.3252000 0.2806000 37.0 70.0 13 95.48 30.77 30.77 0 30.77 0/1
chr1 38411445 rs871524 G A . PASS 0.0431000 0.2262000 0.2401000 0.3181000 0.2403000 0.2019000 36.71 70.0 78 1000.00 7.57 52.56 0 52.56 0/1
chr1 38423853 rs9293 G C . PASS 0.9766000 0.9121000 1.0000000 0.8479000 0.8517000 0.9221000 36.5 69.81 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 38425724 rs17531342 T C . PASS 0.9766000 0.9121000 1.0000000 0.8469000 0.8569000 0.9229000 36.11 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 38425895 rs28675056 T C . PASS 0.9766000 0.9121000 1.0000000 0.8469000 0.8569000 0.9229000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 38442547 rs10890216 G A . PASS 0.9735000 0.9121000 1.0000000 0.8489000 0.8517000 0.9215000 36.38 70.0 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 38444333 rs6660034 A G . PASS 0.9735000 0.9121000 1.0000000 0.8489000 0.8517000 0.9215000 36.13 70.0 55 1000.00 0.00 100.00 0 100.00 1/1
chr1 38444749 rs7555461 T C . PASS 0.3964000 0.5072000 0.6825000 0.4215000 0.5245000 0.4994000 37.0 70.0 83 1000.00 5.74 50.60 0 50.60 0/1
chr1 38449910 rs11210870 T C . PASS 0.2511000 0.3703000 0.2421000 0.2753000 0.3650000 0.2929000 37.0 70.0 66 1000.00 3.03 51.52 0 51.52 0/1
chr1 38450367 rs6680796 A G . PASS 0.9766000 0.9107000 1.0000000 0.8489000 0.8579000 0.9233000 35.93 69.7 67 1000.00 1.45 98.51 0 100.00 1/1
chr1 38455389 rs3935867 C T . PASS 0.9191000 0.8977000 0.9980000 0.8479000 0.8507000 0.9044000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 38463504 rs7366048 C T . PASS 0.6861000 0.5202000 0.6756000 0.4205000 0.5225000 0.5757000 37.0 70.0 77 1000.00 9.93 44.16 0 44.16 0/1
chr1 38464639 rs4570384 C G . PASS 0.9924000 1.0000000 1.0000000 1.0000000 1.0000000 0.9980000 37.0 70.0 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 38719784 rs12119990 C T . PASS 0.4206000 0.4049000 0.5883000 0.3827000 0.3569000 0.4321000 36.0 70.0 12 453.75 0.00 100.00 0 100.00 1/1
chr1 38719919 rs928158 A G . PASS 0.4198000 0.4049000 0.5883000 0.3827000 0.3507000 0.4307000 36.59 70.0 148 1000.00 0.00 100.00 0 100.00 1/1
chr1 38961037 rs2992443 C T . PASS 0.3661000 0.6859000 0.6409000 0.6690000 0.6472000 0.5815000 36.31 70.0 82 1000.00 2.02 42.68 0 42.68 0/1
chr1 39174617 rs115579091 G A . PASS 0.0015000 0.0101000 0.0000000 0.0278000 0.0317000 0.0135780 36.14 69.93 60 932.48 8.57 46.67 0 46.67 0/1
chr1 39175496 rs72656176 C T . PASS 0.0469000 0.0043000 0.0238000 0.0089000 0.0164000 0.0228000 36.25 68.5 36 515.49 26.39 44.44 0 44.44 0/1
chr1 39176229 rs56330436 G A . PASS 0.0469000 0.0043000 0.0238000 0.0089000 0.0164000 0.0228000 37.0 69.27 24 354.77 7.58 45.83 0 45.83 0/1
chr1 39280759 rs112189577,rs377380360,rs66878151 AAGAG A . PASS 0.3623000 0.3458000 0.5536000 0.4284000 0.4540000 0.4297000 34.33 70.0 95 782.25 3.51 31.58 0 31.58 0/1
chr1 39305403 rs17499125 C T . PASS 0.0061000 0.1066000 0.1329000 0.2137000 0.0818000 0.1020000 35.71 70.0 49 953.60 13.27 57.14 0 57.14 0/1
chr1 39325063 rs1925678 T C . PASS 0.1528000 0.5922000 0.4048000 0.6660000 0.4121000 0.4181000 36.62 69.68 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 39330399 rs3828041 G A . PASS 0.0061000 0.1066000 0.1329000 0.2127000 0.0818000 0.1018000 35.67 70.0 35 590.03 13.97 51.43 0 51.43 0/1
chr1 39340282 rs880303 C T . PASS 0.1452000 0.4813000 0.2718000 0.4523000 0.3088000 0.3109000 36.2 70.0 84 1000.00 0.48 53.57 0 53.57 0/1
chr1 39340862 rs874243 A G . PASS 0.0061000 0.1167000 0.1319000 0.2177000 0.0798000 0.1036000 37.0 69.29 62 950.49 5.76 45.16 0 45.16 0/1
chr1 39352271 rs2147914 G T . PASS 0.1452000 0.4798000 0.2718000 0.4513000 0.3088000 0.3105000 36.14 70.0 65 913.28 7.69 43.08 0 43.08 0/1
chr1 39361569 rs12085567 G A . PASS 0.0893000 0.1210000 0.1300000 0.2177000 0.0798000 0.1258000 37.0 70.0 12 182.03 0.00 50.00 0 50.00 0/1
chr1 39361615 rs9438984 G A . PASS 0.1452000 0.4798000 0.2728000 0.4513000 0.3078000 0.3105000 36.29 70.0 25 590.37 9.41 68.00 0 68.00 0/1
chr1 39385086 rs7522863 A C . PASS 0.8018000 0.9035000 0.7331000 0.9513000 0.8640000 0.8442000 37.0 70.0 12 461.62 0.00 100.00 0 100.00 1/1
chr1 39457006 rs12043492 C T . PASS 0.6248000 0.5865000 0.7589000 0.4414000 0.7045000 0.6252000 37.0 70.0 14 134.24 31.43 35.71 0 35.71 0/1
chr1 39457332 . T G . PASS . . . . . . 32.2 70.0 18 94.04 111.11 27.78 0 27.78 0/1
chr1 39457335 . T G . PASS . . . . . . 37.0 70.0 14 88.33 128.57 28.57 0 28.57 0/1
chr1 39550204 rs72660075 C G . PASS 0.0159000 0.0101000 0.0000000 0.0089000 0.0000000 0.0073882 37.0 70.0 14 171.86 23.81 42.86 0 42.86 0/1
chr1 39550210 rs260972 C T . PASS 0.4062000 0.9323000 1.0000000 0.9980000 1.0000000 0.8335000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 39748921 rs2275188 G A . PASS 0.2685000 0.6657000 0.6498000 0.7167000 0.7996000 0.5940000 36.39 70.0 98 1000.00 0.00 100.00 0 100.00 1/1
chr1 39763242 rs2275187 G A . PASS 0.2700000 0.6671000 0.5982000 0.7197000 0.7945000 0.5839000 36.14 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 39766055 rs2275186 C T . PASS 0.2693000 0.6671000 0.6696000 0.7187000 0.7996000 0.5988000 36.79 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 39852990 rs72661966 T C . PASS 0.0076000 0.0043000 0.0000000 0.0030000 0.0000000 0.0031949 36.76 70.0 87 1000.00 3.45 57.47 0 57.47 0/1
chr1 39929240 rs7554206 T C . PASS 0.5151000 0.6916000 0.6944000 0.7187000 0.8006000 0.6723000 36.04 70.0 25 984.75 0.00 100.00 0 100.00 1/1
chr1 39957913 rs4660269 A G . PASS 0.2897000 0.8069000 0.6825000 0.8887000 0.8609000 0.6723000 36.82 68.62 68 1000.00 0.00 100.00 0 100.00 1/1
chr1 39958080 rs10888798 C G . PASS 0.2769000 0.5893000 0.5556000 0.6551000 0.7883000 0.5521000 37.0 69.0 18 712.24 0.00 100.00 0 100.00 1/1
chr1 39976930 rs201515760 C T . PASS 0.4523000 0.1340000 0.3135000 0.0338000 0.0757000 0.2226000 37.0 56.29 38 437.93 25.56 36.84 0 36.84 0/1
chr1 39976974 rs202230393 C T . PASS 0.4297000 0.0461000 0.0000000 0.0070000 0.0358000 0.1282000 36.25 51.69 48 479.37 8.33 33.33 0 33.33 0/1
chr1 39977364 . C T . PASS . . . . . . 35.91 52.82 78 588.92 5.86 26.92 0 28.21 0/1
chr1 39977575 rs200415763 C T . PASS . . . . . . 37.0 48.43 33 452.98 9.52 42.42 0 42.42 0/1
chr1 39988084 rs6525 G A . PASS . . . . . . 37.0 59.18 108 561.40 25.42 20.37 0 20.37 0/1
chr1 39988318 rs139401553 T TTTG . PASS 0.2549000 0.5259000 0.5198000 0.4940000 0.7249000 0.4856000 36.43 66.29 12 240.98 0.00 66.67 0 66.67 0/1
chr1 39988799 rs41270825 G A . PASS 0.0023000 0.0303000 0.0000000 0.0497000 0.0552000 0.0256000 37.0 68.48 86 1000.00 2.55 48.84 0 48.84 0/1
chr1 39989186 rs710911 T C . PASS 0.8835000 0.9827000 1.0000000 0.9960000 1.0000000 0.9661000 36.29 69.12 17 662.60 0.00 100.00 0 100.00 1/1
chr1 39989197 rs710912 C T . PASS 0.1929000 0.0202000 0.0000000 0.0070000 0.0348000 0.0619000 37.0 69.12 21 238.48 22.62 38.10 0 38.10 0/1
chr1 39989327 rs1727098 C T . PASS 0.2685000 0.5490000 0.5526000 0.5328000 0.7771000 0.5170000 36.33 69.67 29 620.10 4.60 62.07 0 62.07 0/1
chr1 39991473 rs35048605 CAG CCA . PASS . . . . . . 36.84 68.3 168 1000.00 3.20 45.24 0 45.24 0/1
chr1 39991588 rs3738676 G T . PASS 0.3601000 0.3617000 0.4405000 0.3678000 0.1585000 0.3387000 36.0 70.0 22 386.40 7.58 54.55 0 54.55 0/1
chr1 40030048 rs72663531 T G . PASS 0.0000000 0.0072000 0.0000000 0.0070000 0.0041000 0.0031949 35.86 70.0 35 711.19 5.71 60.00 0 60.00 0/1
chr1 40035182 rs9438926 A G . PASS 0.2436000 0.0317000 0.0000000 0.0070000 0.0358000 0.0771000 37.0 70.0 22 277.25 14.14 40.91 0 40.91 0/1
chr1 40092089 rs2695320 T C . PASS 0.8888000 0.9712000 0.9990000 0.9791000 0.9571000 0.9539000 37.0 70.0 15 591.07 0.00 100.00 0 100.00 1/1
chr1 40098328 rs784625 T C . PASS 1.0000000 0.9942000 0.9990000 0.9891000 0.9611000 0.9892000 37.0 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 40131089 rs734497 G T . PASS 0.0053000 0.0793000 0.0079000 0.1690000 0.2239000 0.0917000 35.0 70.0 11 168.89 0.00 54.55 0 54.55 0/1
chr1 40149515 rs784633 A G . PASS 0.9191000 0.8256000 0.8165000 0.8250000 0.8661000 0.8562000 37.0 68.89 18 716.39 0.00 100.00 0 100.00 1/1
chr1 40149642 rs784634 G T . PASS 0.9191000 0.8256000 0.8165000 0.8250000 0.8661000 0.8562000 36.84 69.73 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 40149870 rs113763288 C G . PASS 0.9191000 0.8256000 0.8175000 0.8250000 0.8661000 0.8564000 35.15 70.0 14 402.52 9.52 85.71 0 92.86 0/1
chr1 40149875 rs113459798 C T . PASS 0.4826000 0.2406000 0.2698000 0.3519000 0.3599000 0.3560000 34.23 70.0 14 400.87 7.14 85.71 0 92.86 1/1
chr1 40150156 rs9662128 G A . PASS 0.4811000 0.2406000 0.2698000 0.3519000 0.3609000 0.3558000 36.68 70.0 112 1000.00 0.00 100.00 0 100.00 1/1
chr1 40150370 rs2746058 C T . PASS 0.9191000 0.8256000 0.8165000 0.8241000 0.8661000 0.8560000 35.5 70.0 16 608.82 0.00 100.00 0 100.00 1/1
chr1 40183922 rs481423 C T . PASS 0.3729000 0.2219000 0.5079000 0.1948000 0.2689000 0.3231000 36.25 70.0 31 530.54 9.68 51.61 0 51.61 0/1
chr1 40207169 rs497333 T G . PASS 0.5446000 0.5375000 0.4633000 0.6809000 0.6401000 0.5733000 37.0 70.0 46 743.87 10.67 47.83 0 47.83 0/1
chr1 40214525 rs7520588 T A . PASS 0.1936000 0.2824000 0.2470000 0.3569000 0.4141000 0.2925000 37.0 68.95 33 657.69 22.01 57.58 0 57.58 0/1
chr1 40218695 rs72665281 G A . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 36.31 69.62 121 1000.00 4.13 42.98 0 42.98 0/1
chr1 40219065 rs1046988 C T . PASS 0.1679000 0.2810000 0.2312000 0.3559000 0.4110000 0.2815000 37.0 70.0 60 1000.00 3.33 50.00 0 50.00 0/1
chr1 40226046 rs12094291 G A . PASS 0.1800000 0.2781000 0.2470000 0.3569000 0.4121000 0.2879000 36.54 70.0 113 1000.00 4.12 46.02 0 46.02 0/1
chr1 40229297 rs71060328 A AC . PASS 0.3306000 0.3818000 0.3204000 0.4443000 0.4233000 0.3766000 37.0 50.25 22 136.34 36.36 27.27 0 27.27 0/1
chr1 40229319 rs493473 G A . PASS . . . . . . 37.0 53.54 38 396.17 32.39 34.21 0 34.21 0/1
chr1 40229368 rs2463260 A G . PASS 0.2625000 0.3559000 0.3075000 0.4473000 0.4888000 0.3658000 36.4 55.95 92 1000.00 2.17 43.48 0 43.48 0/1
chr1 40235331 rs144237350 C T . PASS . . . . . . 37.0 45.33 50 192.97 49.78 18.00 0 18.00 0/1
chr1 40235448 rs150795467 C T . PASS . . . . . . 37.0 56.07 111 259.98 21.62 13.51 0 13.51 0/1
chr1 40235489 rs77857664 T C . PASS . . . . . . 37.0 49.63 73 541.45 16.73 26.03 0 26.03 0/1
chr1 40236973 rs147759616 T A . PASS . . . . . . 35.74 58.11 62 546.38 11.88 30.65 0 30.65 0/1
chr1 40237069 rs369113959 T C . PASS 0.4531000 0.2882000 0.3403000 0.3101000 0.2372000 0.3367000 37.0 44.0 10 62.74 0.00 30.00 0 30.00 0/1
chr1 40240582 rs200876716 G A . PASS . . . . . . 35.0 51.33 35 100.80 20.00 17.14 0 17.14 0/1
chr1 40240626 rs201381914 G A . PASS . . . . . . 37.0 52.67 38 103.78 31.58 15.79 0 15.79 0/1
chr1 40240843 rs34047126 C T . PASS 0.0673000 0.1023000 0.0317000 0.1759000 0.2270000 0.1180000 37.0 65.5 18 247.51 0.00 44.44 0 44.44 0/1
chr1 40308397 rs3768310 G A . PASS 0.6150000 0.4107000 0.5933000 0.3946000 0.4632000 0.5084000 35.74 70.0 19 734.13 0.00 100.00 0 100.00 1/1
chr1 40313849 rs1333742 T C . PASS 0.0098000 0.1124000 0.0069000 0.1928000 0.2127000 0.0998000 37.0 70.0 11 143.27 3.64 45.45 0 45.45 0/1
chr1 40319587 rs2294814 A C . PASS 0.9039000 0.4654000 0.5933000 0.4423000 0.4826000 0.6056000 35.96 70.0 23 897.06 0.00 100.00 0 100.00 1/1
chr1 40349131 rs3845570 G A . PASS 0.6157000 0.4107000 0.5933000 0.3946000 0.4632000 0.5086000 36.33 70.0 107 1000.00 0.00 100.00 0 100.00 1/1
chr1 40363054 rs3134614 G C . PASS 0.9962000 0.9035000 1.0000000 0.8917000 0.8558000 0.9357000 36.69 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 40367592 rs804719 A G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.14 70.0 14 537.29 0.00 100.00 0 100.00 1/1
chr1 40428325 rs55730353 G A . PASS 0.0053000 0.0014000 0.0000000 0.0030000 0.0000000 0.0021965 37.0 65.0 17 83.44 8.82 23.53 0 23.53 0/1
chr1 40428328 rs3131700 G T . PASS 0.3185000 0.6297000 0.9583000 0.5268000 0.7812000 0.6226000 37.0 70.0 17 455.22 2.71 76.47 0 76.47 0/1
chr1 40428587 rs3131699 G T . PASS 0.1120000 0.3963000 0.5317000 0.2863000 0.4826000 0.3433000 36.4 68.1 63 1000.00 1.59 63.49 0 63.49 0/1
chr1 40533266 rs11207440 T G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.02 69.56 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 40533287 rs6665926 T G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 35.21 69.4 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 40533315 rs6665933 T G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.49 68.11 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 40533320 rs6665936 T G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 35.82 67.84 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 40533326 rs6665937 T G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.55 67.92 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 40533347 rs6665944 T G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 35.71 67.71 65 1000.00 0.93 96.92 0 100.00 1/1
chr1 40536074 rs58190778 C CT . PASS 0.7179000 0.7522000 0.7411000 0.7684000 0.7137000 0.7366000 37.0 70.0 25 993.19 0.00 100.00 0 100.00 1/1
chr1 40556922 rs3122439 T C . PASS 0.9796000 0.9971000 1.0000000 1.0000000 1.0000000 0.9942000 35.67 70.0 18 692.36 0.00 100.00 0 100.00 1/1
chr1 40705427 rs34141181 C G . PASS 0.0144000 0.0375000 0.0298000 0.0646000 0.1687000 0.0609000 35.43 69.13 45 752.63 19.52 51.11 0 51.11 0/1
chr1 40705726 rs10889205 A T . PASS 0.2542000 0.1671000 0.0625000 0.1819000 0.0460000 0.1484000 36.43 70.0 45 693.10 16.51 46.67 0 46.67 0/1
chr1 40733658 rs7516571 A G . PASS 0.2708000 0.1859000 0.2212000 0.2296000 0.1779000 0.2226000 37.0 70.0 17 125.21 0.00 29.41 0 29.41 0/1
chr1 40737516 rs6677717 T G . PASS 1.0000000 0.9971000 1.0000000 0.9801000 0.9877000 0.9932000 37.0 70.0 25 1000.00 0.00 100.00 0 100.00 1/1
chr1 40773123 rs2228567 G C . PASS 0.0514000 0.0836000 0.1052000 0.0974000 0.0961000 0.0847000 36.67 70.0 70 1000.00 2.70 51.43 0 51.43 0/1
chr1 40830626 rs3013460 A G . PASS 0.7678000 0.5605000 0.5923000 0.4602000 0.5204000 0.5936000 37.0 69.94 16 632.84 0.00 100.00 0 100.00 1/1
chr1 40840249 rs200385638 T TTGCG . PASS 0.5129000 0.3977000 0.4593000 0.3658000 0.3865000 0.4319000 35.88 70.0 94 810.33 9.17 30.85 0 30.85 0/1
chr1 40840268 rs72258841 CGT C . PASS . . . . . . 35.68 70.0 111 75.07 4.41 54.05 0 63.06 0/1
chr1 40840274 . T C . PASS 0.1626000 0.0663000 0.2143000 0.0905000 0.1493000 0.1426000 35.69 70.0 107 1000.00 11.84 42.06 0 51.40 0/1
chr1 40840296 rs4561032 T A . PASS 0.4629000 0.3761000 0.4772000 0.4573000 0.4601000 0.4521000 36.09 70.0 125 1000.00 1.67 87.20 0 89.60 0/1
chr1 40840353 rs1003710 A G . PASS 0.7118000 0.5576000 0.5843000 0.4583000 0.5194000 0.5763000 36.08 70.0 137 1000.00 3.65 56.93 0 56.93 0/1
chr1 40859213 rs377617377,rs60488304 CT C . PASS . . . . . . 30.68 70.0 20 586.81 5.26 95.00 0 95.00 1/1
chr1 40872623 rs2982510 C T . PASS 0.5303000 0.2003000 0.2857000 0.2396000 0.2239000 0.3171000 37.0 70.0 11 226.81 0.00 63.64 0 63.64 0/1
chr1 40879808 rs209605 G T . PASS 0.9735000 0.8199000 0.7708000 0.8638000 0.8292000 0.8612000 36.17 70.0 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 40879952 rs2294752 T G . PASS 0.5378000 0.2003000 0.2867000 0.2396000 0.2239000 0.3193000 36.27 70.0 73 1000.00 5.56 45.21 0 45.21 0/1
chr1 40880804 rs2294755 C T . PASS 0.0189000 0.2262000 0.1835000 0.3887000 0.2740000 0.2049000 37.0 70.0 13 179.02 17.95 46.15 0 46.15 0/1
chr1 40881041 rs209606 C G . PASS 0.9924000 0.9222000 0.9772000 0.8847000 0.9417000 0.9481000 36.58 70.0 85 1000.00 0.00 100.00 0 100.00 1/1
chr1 40881840 rs1007263 G A . PASS 0.0401000 0.0490000 0.1766000 0.0895000 0.1227000 0.0948000 37.0 70.0 27 345.75 8.75 40.74 0 40.74 0/1
chr1 40928067 rs2036196 A T . PASS 0.0552000 0.0548000 0.0327000 0.1421000 0.0695000 0.0709000 37.0 70.0 32 535.38 18.75 50.00 0 50.00 0/1
chr1 40955156 rs10789144 A T . PASS 0.0378000 0.2695000 0.2748000 0.5119000 0.3047000 0.2650000 37.0 70.0 14 545.15 0.00 100.00 0 100.00 1/1
chr1 41101572 rs2253835 A G . PASS 0.9259000 0.6801000 0.5357000 0.7922000 0.5297000 0.7091000 36.42 69.86 144 1000.00 0.00 100.00 0 100.00 1/1
chr1 41107360 rs491619 T C . PASS 0.9266000 0.6700000 0.5089000 0.7833000 0.5153000 0.6979000 36.58 70.0 86 1000.00 0.00 100.00 0 100.00 1/1
chr1 41107612 rs2076332 C G . PASS 0.2292000 0.2723000 0.0903000 0.2734000 0.2260000 0.2155000 37.0 70.0 44 624.58 4.07 43.18 0 43.18 0/1
chr1 41107699 rs1534955 C G . PASS 0.2950000 0.2983000 0.1776000 0.3111000 0.2352000 0.2634000 37.0 70.0 10 100.36 40.00 40.00 0 40.00 0/1
chr1 41204569 rs1057925 C T . PASS 0.4244000 0.5115000 0.4692000 0.5895000 0.4417000 0.4820000 36.64 69.94 53 1000.00 4.12 62.26 0 62.26 0/1
chr1 41228443 rs3767954 C G . PASS 0.8623000 0.9280000 0.9901000 0.8946000 0.9294000 0.9167000 37.0 70.0 11 97.35 36.36 36.36 0 36.36 0/1
chr1 41235177 rs10889608 G C . PASS 0.3775000 0.3069000 0.4484000 0.4493000 0.2812000 0.3776000 35.91 70.0 18 356.67 6.06 61.11 0 61.11 0/1
chr1 41284366 rs2361660 G C . PASS 0.5484000 0.5548000 0.4841000 0.6978000 0.5542000 0.5675000 36.31 69.71 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 41284406 rs2361659 A G . PASS 0.5454000 0.5548000 0.4841000 0.6978000 0.5552000 0.5669000 35.75 69.58 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 41285087 rs4660468 T C . PASS 0.5348000 0.5620000 0.4683000 0.6978000 0.5624000 0.5633000 36.03 70.0 111 1000.00 0.00 100.00 0 100.00 1/1
chr1 41288098 . T G . PASS . . . . . . 37.0 70.0 30 165.48 133.33 23.33 0 23.33 0/1
chr1 41288102 rs376712113 T G . PASS 0.0030000 0.0101000 0.0010000 0.0080000 0.0000000 0.0039936 35.0 70.0 26 123.74 138.46 23.08 0 23.08 0/1
chr1 41288105 rs148218398 G C . PASS 0.0038000 0.0403000 0.0000000 0.0835000 0.0583000 0.0347000 37.0 70.0 25 556.46 43.50 64.00 0 64.00 0/1
chr1 41289205 rs1571258 G C . PASS 0.8449000 0.9769000 0.9990000 0.9672000 0.9591000 0.9411000 36.8 70.0 118 1000.00 0.00 100.00 0 100.00 1/1
chr1 41289385 rs3767938 C T . PASS 0.0582000 0.0836000 0.2421000 0.1074000 0.2331000 0.1428000 37.0 70.0 16 169.99 20.83 37.50 0 37.50 0/1
chr1 41289993 rs3767940 T C . PASS 0.1157000 0.2349000 0.4603000 0.3449000 0.4315000 0.3093000 36.33 70.0 46 568.93 0.48 39.13 0 39.13 0/1
chr1 41296828 rs34287852 T G . PASS 0.0061000 0.1124000 0.0516000 0.2167000 0.1176000 0.0940000 36.52 70.0 116 1000.00 4.62 43.10 0 43.10 0/1
chr1 41298652 rs913378 T C . PASS 0.6815000 0.7738000 0.8403000 0.6541000 0.7730000 0.7386000 35.71 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 41453453 rs4453027 G T . PASS 0.3101000 0.3386000 0.4464000 0.4523000 0.5286000 0.4127000 36.03 70.0 87 1000.00 0.00 100.00 0 100.00 1/1
chr1 41475085 rs12144160 A G . PASS 0.2141000 0.6095000 0.5675000 0.5507000 0.5225000 0.4679000 36.43 70.0 45 697.26 10.79 46.67 0 46.67 0/1
chr1 41494005 . A G . PASS . . . . . . 33.0 70.0 59 103.10 149.15 13.56 0 15.25 0/1
chr1 41540853 rs2011981 A T . PASS 0.9871000 0.8631000 0.9504000 0.7992000 0.9070000 0.9091000 36.48 69.57 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 41540861 rs2011982 T C . PASS 0.9924000 0.8631000 0.9524000 0.7992000 0.9070000 0.9109000 36.31 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 41949595 rs2759256 G A . PASS 0.9826000 0.9986000 1.0000000 1.0000000 1.0000000 0.9952000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 41949628 rs2759257 A C . PASS 0.7534000 0.8948000 0.9077000 0.8748000 0.7270000 0.8233000 36.17 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 41949972 rs11210278 C T . PASS 0.0151000 0.0922000 0.3472000 0.2008000 0.1452000 0.1554000 37.0 68.0 12 349.11 10.00 83.33 0 83.33 0/1
chr1 41950312 rs2984691 T C . PASS 0.8578000 0.9481000 0.9494000 0.9493000 0.8057000 0.8970000 37.0 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 41976017 rs678110 C T . PASS 0.3336000 0.6398000 0.9960000 0.5358000 0.7301000 0.6274000 35.91 70.0 11 411.98 0.00 100.00 0 100.00 1/1
chr1 41976217 rs72669005 G A . PASS 0.2277000 0.0648000 0.0040000 0.0288000 0.1196000 0.0990000 36.65 70.0 74 1000.00 7.15 45.95 0 45.95 0/1
chr1 41976328 rs9439043 T C . PASS 0.8669000 0.9899000 1.0000000 0.9980000 1.0000000 0.9631000 36.14 70.0 112 1000.00 0.00 100.00 0 100.00 1/1
chr1 41976345 rs140839222 T C . PASS 0.0174000 0.0476000 0.0040000 0.0249000 0.1166000 0.0397000 36.05 70.0 102 1000.00 11.04 37.25 0 37.25 0/1
chr1 41976529 rs11809423 C T . PASS 0.2352000 0.0360000 0.0149000 0.0249000 0.1288000 0.1002000 36.27 70.0 60 1000.00 5.76 55.00 0 55.00 0/1
chr1 41978566 rs2991344 T G . PASS . . . . . . 36.49 69.79 95 1000.00 0.00 100.00 0 100.00 1/1
chr1 41978825 rs2483689 C G . PASS 0.9781000 1.0000000 1.0000000 1.0000000 1.0000000 0.9942000 36.74 70.0 137 1000.00 0.00 100.00 0 100.00 1/1
chr1 41979156 rs615177 A G . PASS 0.6604000 0.7190000 0.9931000 0.5835000 0.7342000 0.7344000 36.47 69.78 91 1000.00 0.00 100.00 0 100.00 1/1
chr1 41990461 rs35122733 G A . PASS 0.0144000 0.1124000 0.0040000 0.0417000 0.1033000 0.0487000 36.16 69.65 122 1000.00 5.49 46.72 0 46.72 0/1
chr1 42045302 rs2810564 G A . PASS 0.9561000 0.9957000 1.0000000 1.0000000 1.0000000 0.9878000 35.8 70.0 10 370.22 0.00 100.00 0 100.00 1/1
chr1 42045747 rs35730380 T C . PASS 0.0083000 0.1124000 0.0030000 0.0398000 0.0992000 0.0457000 36.72 70.0 81 1000.00 0.52 53.09 0 53.09 0/1
chr1 42046812 rs2810565 C T . PASS 0.9175000 0.9942000 1.0000000 0.9990000 1.0000000 0.9772000 34.37 70.0 82 1000.00 0.00 100.00 0 100.00 1/1
chr1 42047208 rs17363472 C G . PASS 0.0038000 0.1153000 0.0020000 0.0427000 0.1176000 0.0489000 36.31 70.0 63 1000.00 0.63 55.56 0 55.56 0/1
chr1 42048745 rs2810566 T C . PASS 0.9569000 0.9957000 1.0000000 1.0000000 1.0000000 0.9880000 36.71 69.05 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 42049032 rs2984694 G A . PASS 0.8139000 0.9899000 1.0000000 0.9990000 1.0000000 0.9493000 36.84 70.0 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 42049140 rs2475842 C G . PASS 0.8139000 0.9899000 1.0000000 0.9990000 1.0000000 0.9493000 36.26 69.85 130 1000.00 0.00 100.00 0 100.00 1/1
chr1 42050366 rs2146315 C T . PASS 0.3215000 0.1945000 0.4345000 0.2326000 0.3241000 0.3093000 37.0 70.0 88 1000.00 14.44 38.64 0 38.64 0/1
chr1 42331179 rs6678302 A G . PASS 0.5809000 0.4697000 0.5615000 0.5398000 0.6575000 0.5683000 36.54 70.0 111 1000.00 10.88 46.85 0 46.85 0/1
chr1 42331353 rs11210535 G A . PASS 0.6036000 0.4697000 0.5615000 0.5398000 0.6585000 0.5745000 35.0 70.0 11 173.04 15.15 54.55 0 54.55 0/1
chr1 42414629 rs113801417 T C . PASS . . . . . . 37.0 64.4 28 92.11 55.71 17.86 0 17.86 0/1
chr1 42619139 rs1047047 A G . PASS 0.4614000 0.2896000 0.4038000 0.1650000 0.2004000 0.3155000 36.57 70.0 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 42629040 rs2232224 A G . PASS 0.6952000 0.9813000 1.0000000 1.0000000 1.0000000 0.9169000 35.91 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 42647536 . T TCACACA . PASS . . . . . . 36.71 70.0 52 582.06 46.15 25.00 0 36.54 0/1
chr1 42693597 rs343376 A G . PASS 0.7632000 0.8862000 0.8482000 0.7913000 0.7239000 0.7953000 36.27 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 42938744 . TT T . PASS . . . . . . 37.0 70.0 11 50.18 6.06 27.27 0 27.27 0/1
chr1 42966037 rs2992346 T C . PASS 0.9735000 0.9986000 1.0000000 0.9990000 0.9980000 0.9922000 36.2 69.93 15 579.06 0.00 100.00 0 100.00 1/1
chr1 43212431 rs4660662 A G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 37.0 70.0 108 1000.00 0.00 100.00 0 100.00 1/1
chr1 43213499 rs3738499 C T . PASS 0.3200000 0.5980000 0.6677000 0.6004000 0.6748000 0.5541000 37.0 70.0 23 441.31 7.36 56.52 0 56.52 0/1
chr1 43228189 rs2816593 T A . PASS 0.9985000 0.9928000 1.0000000 0.9791000 0.9959000 0.9936000 33.31 70.0 13 455.33 0.00 100.00 0 100.00 1/1
chr1 43232877 rs3738505 A T . PASS 0.2088000 0.1873000 0.4415000 0.2266000 0.3609000 0.2859000 34.6 66.0 12 124.10 6.67 41.67 0 41.67 0/1
chr1 43239395 rs2760075 G A . PASS 0.7209000 0.6499000 0.7073000 0.6243000 0.8405000 0.7123000 35.5 70.0 35 506.49 1.43 45.71 0 45.71 0/1
chr1 43296195 rs33953680 C T . PASS 0.0234000 0.2723000 0.0099000 0.2952000 0.1902000 0.1424000 36.27 70.0 88 1000.00 9.85 37.50 0 37.50 0/1
chr1 43296354 rs12727498 G T . PASS . . . . . . 35.0 70.0 11 168.88 3.03 54.55 0 54.55 0/1
chr1 43300663 rs4660672 T C . PASS 0.5575000 0.6729000 0.3601000 0.7296000 0.6299000 0.5825000 36.13 69.64 55 1000.00 0.00 100.00 0 100.00 1/1
chr1 43300921 rs4660673 C G . PASS 0.7943000 0.8573000 0.5843000 0.8370000 0.6830000 0.7476000 35.8 70.0 10 366.07 0.00 100.00 0 100.00 1/1
chr1 43309383 rs3214967 G GT . PASS 0.5772000 0.4366000 0.5774000 0.6859000 0.6636000 0.5964000 35.2 70.0 97 1000.00 0.00 100.00 0 100.00 1/1
chr1 43309548 rs1484324 G A . PASS 0.9486000 0.9582000 0.7976000 0.9980000 0.9990000 0.9393000 35.15 70.0 13 483.51 0.00 100.00 0 100.00 1/1
chr1 43352685 rs6678503 A G . PASS 0.8699000 0.7262000 0.7808000 0.8757000 0.8476000 0.8289000 36.52 70.0 25 996.76 0.00 100.00 0 100.00 1/1
chr1 43353134 rs6674019 G T . PASS 0.4349000 0.2911000 0.1925000 0.4612000 0.3282000 0.3506000 36.2 70.0 20 517.73 6.67 75.00 0 75.00 0/1
chr1 43356765 rs10789430 T C . PASS 0.9856000 0.9986000 1.0000000 1.0000000 1.0000000 0.9960000 36.5 69.75 24 954.99 0.00 100.00 0 100.00 1/1
chr1 43357600 rs1681855 T C . PASS 0.6846000 0.7867000 0.6448000 0.7376000 0.6176000 0.6883000 36.6 69.23 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 43357803 rs2792600 G T . PASS 0.3298000 0.2795000 0.1895000 0.4543000 0.3425000 0.3221000 36.43 70.0 21 825.53 0.00 100.00 0 100.00 1/1
chr1 43357810 rs35697737 GAC G . PASS 0.3298000 0.2795000 0.1895000 0.4543000 0.3425000 0.3221000 36.05 70.0 20 646.03 0.00 100.00 0 100.00 1/1
chr1 43393245 rs11282849,rs3831326 G GGGTGAGAAAT . PASS 0.8283000 0.6585000 0.4752000 0.4602000 0.6115000 0.6174000 36.59 70.0 35 753.53 4.94 62.86 0 62.86 0/1
chr1 43611230 rs641350 G T . PASS 0.5575000 0.4251000 0.3204000 0.3688000 0.3037000 0.4040000 36.68 70.0 82 1000.00 8.86 46.34 0 46.34 0/1
chr1 43613786 rs519666 G T . PASS 0.1619000 0.2017000 0.0010000 0.3211000 0.1534000 0.1653000 34.91 69.13 48 731.61 13.77 47.92 0 47.92 0/1
chr1 43618596 rs12074551 G A . PASS 0.0575000 0.1455000 0.0000000 0.2833000 0.1411000 0.1198000 36.37 70.0 64 1000.00 2.14 59.38 0 59.38 0/1
chr1 43632536 rs7163 C T . PASS 0.1301000 0.1513000 0.0000000 0.2883000 0.1442000 0.1414000 35.91 70.0 47 721.00 7.54 46.81 0 46.81 0/1
chr1 43632814 . ATT AGC . PASS . . . . . . 35.7 70.0 46 768.76 4.35 50.00 0 50.00 0/1
chr1 43632997 rs1691302 A G . PASS 0.1278000 0.1513000 0.0000000 0.2883000 0.1442000 0.1408000 37.0 70.0 11 185.05 27.27 54.55 0 54.55 0/1
chr1 43634766 rs55684025 A G . PASS 0.0015000 0.0029000 0.0000000 0.0129000 0.0000000 0.0033946 37.0 70.0 16 253.54 12.50 50.00 0 50.00 0/1
chr1 43636484 rs1049276 C G . PASS 0.1278000 0.1513000 0.0000000 0.2883000 0.1442000 0.1408000 37.0 70.0 65 1000.00 19.86 50.77 0 50.77 0/1
chr1 43637549 rs1691289 A G . PASS 0.1316000 0.1513000 0.0248000 0.2893000 0.1483000 0.1478000 37.0 70.0 101 1000.00 0.41 38.61 0 38.61 0/1
chr1 43637932 rs9519 T C . PASS 0.1316000 0.1513000 0.0248000 0.2903000 0.1462000 0.1476000 37.0 70.0 67 1000.00 6.42 59.70 0 59.70 0/1
chr1 43638410 rs1782386 G C . PASS 0.1309000 0.1513000 0.0000000 0.2903000 0.1462000 0.1424000 37.0 70.0 42 630.60 1.50 45.24 0 45.24 0/1
chr1 43638457 rs1782387 T A . PASS 0.1309000 0.1513000 0.0000000 0.2903000 0.1462000 0.1424000 36.66 70.0 73 1000.00 1.49 47.95 0 47.95 0/1
chr1 43649508 rs663824 A G . PASS 0.8434000 0.5101000 0.3194000 0.4135000 0.4070000 0.5202000 36.66 69.43 52 1000.00 0.99 67.31 0 67.31 0/1
chr1 43652369 rs6413971 T C . PASS 0.9879000 1.0000000 1.0000000 1.0000000 1.0000000 0.9968000 36.33 70.0 18 704.37 0.00 100.00 0 100.00 1/1
chr1 43663376 rs513009 A G . PASS 0.5454000 0.7378000 0.6806000 0.9324000 0.7597000 0.7189000 36.77 70.0 105 1000.00 0.00 100.00 0 100.00 1/1
chr1 43664119 rs603560 A G . PASS 0.2829000 0.2089000 0.0020000 0.3181000 0.1687000 0.2009000 37.0 70.0 10 146.29 20.00 50.00 0 50.00 0/1
chr1 43664218 rs603123 C T . PASS 0.2829000 0.2089000 0.0020000 0.3181000 0.1748000 0.2021000 36.11 70.0 61 887.70 0.49 44.26 0 44.26 0/1
chr1 43672636 rs11210812 T G . PASS 0.1611000 0.4841000 0.6835000 0.5656000 0.5808000 0.4742000 36.57 70.0 65 925.29 7.69 43.08 0 43.08 0/1
chr1 43675467 rs2453412 G A . PASS 0.5408000 0.6772000 0.6786000 0.8877000 0.7342000 0.6949000 36.09 70.0 132 1000.00 0.00 100.00 0 100.00 1/1
chr1 43680839 rs34721748 T TG . PASS . . . . . . 37.0 70.0 11 127.68 3.64 45.45 0 45.45 0/1
chr1 43680855 rs4233492 G A . PASS 0.9713000 0.9986000 1.0000000 1.0000000 1.0000000 0.9922000 37.0 70.0 15 591.07 0.00 100.00 0 100.00 1/1
chr1 43688743 rs11585059 G A . PASS 0.1672000 0.1427000 0.0010000 0.2793000 0.1329000 0.1462000 37.0 70.0 26 599.36 14.48 65.38 0 65.38 0/1
chr1 43699935 rs2477561 C T . PASS 0.9796000 1.0000000 1.0000000 1.0000000 1.0000000 0.9946000 35.62 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 43700140 rs2483688 A G . PASS 0.6906000 0.7046000 0.9177000 0.8062000 0.8691000 0.7963000 36.74 70.0 94 1000.00 0.00 100.00 0 100.00 1/1
chr1 43738340 rs10890247 A C . PASS 0.8139000 0.6182000 0.4415000 0.5586000 0.5041000 0.6000000 36.74 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 43771016 rs3831248 TA T . PASS 0.7496000 0.6441000 0.8631000 0.6292000 0.8957000 0.7622000 37.0 70.0 36 559.70 16.99 47.22 0 47.22 0/1
chr1 43773033 rs2275180 A G . PASS 0.8986000 0.6542000 0.8700000 0.6382000 0.8978000 0.8065000 36.48 70.0 38 801.86 27.00 60.53 0 60.53 0/1
chr1 43774878 rs2282226 C T . PASS 0.0666000 0.3401000 0.1310000 0.3688000 0.1022000 0.1851000 36.76 70.0 99 1000.00 3.26 49.49 0 49.49 0/1
chr1 43777852 rs1999595 C T . PASS 0.6936000 0.8487000 0.8373000 0.8628000 0.8599000 0.8105000 37.0 70.0 25 560.60 6.50 64.00 0 64.00 0/1
chr1 43779564 rs3120276 T C . PASS 0.8911000 0.6427000 0.8790000 0.6272000 0.9008000 0.8031000 36.64 70.0 176 1000.00 4.92 37.50 0 37.50 0/1
chr1 43782846 rs1198982 G A . PASS 0.8933000 0.6412000 0.8720000 0.6233000 0.8947000 0.8001000 37.0 70.0 27 303.96 3.70 37.04 0 37.04 0/1
chr1 43784956 rs1199039 A G . PASS 0.1815000 0.3631000 0.1478000 0.3777000 0.1125000 0.2258000 36.59 69.31 123 1000.00 3.03 47.15 0 47.15 0/1
chr1 43812075 rs1760670 G A . PASS 0.1944000 0.3646000 0.0843000 0.3708000 0.0838000 0.2097000 36.2 70.0 23 512.85 7.54 65.22 0 65.22 0/1
chr1 43814864 rs839995 T C . PASS 0.1498000 0.3617000 0.1071000 0.3708000 0.0920000 0.2037000 37.0 70.0 14 217.78 14.29 50.00 0 50.00 0/1
chr1 43825644 rs839763 T C . PASS 0.2436000 0.3674000 0.1071000 0.3708000 0.0910000 0.2290000 37.0 69.96 76 866.58 3.22 35.53 0 35.53 0/1
chr1 43826312 rs710251 C A . PASS 0.6906000 0.6427000 0.5208000 0.6372000 0.4703000 0.5960000 36.2 70.0 35 472.58 3.81 42.86 0 42.86 0/1
chr1 43855546 rs839752 A G . PASS 0.2360000 0.3746000 0.1062000 0.3708000 0.0920000 0.2280000 37.0 70.0 65 1000.00 1.43 63.08 0 63.08 0/1
chr1 43855578 rs839753 G C . PASS 0.6974000 0.6484000 0.5089000 0.6382000 0.4714000 0.5966000 36.45 70.0 68 1000.00 0.00 64.71 0 64.71 0/1
chr1 43869235 rs710249 G C . PASS 0.2345000 0.3934000 0.1062000 0.4215000 0.1012000 0.2422000 37.0 70.0 31 538.39 10.89 51.61 0 51.61 0/1
chr1 43886494 rs2782643 C T . PASS 0.0998000 0.3790000 0.0823000 0.4205000 0.0930000 0.1981000 36.71 70.0 89 1000.00 2.80 46.07 0 46.07 0/1
chr1 43888348 rs77379551 C G . PASS 0.0038000 0.0159000 0.0000000 0.0338000 0.0072000 0.0113820 37.0 70.0 20 446.19 14.62 65.00 0 65.00 0/1
chr1 43888602 rs2782645 G A . PASS 0.2345000 0.3905000 0.1062000 0.4205000 0.1002000 0.2414000 36.08 70.0 35 393.18 8.35 37.14 0 37.14 0/1
chr1 43895568 rs41307830 G A . PASS 0.0015000 0.0014000 0.0000000 0.0089000 0.0031000 0.0029952 36.54 70.0 60 860.95 13.08 43.33 0 43.33 0/1
chr1 43901011 rs2039531 A C . PASS 0.1006000 0.3790000 0.0823000 0.4225000 0.0941000 0.1989000 36.68 70.0 73 1000.00 9.26 50.68 0 50.68 0/1
chr1 43903589 rs2782648 G T . PASS 0.1460000 0.3862000 0.0823000 0.4215000 0.0951000 0.2119000 36.6 69.33 57 1000.00 2.46 52.63 0 52.63 0/1
chr1 43904316 rs2842184 A G . PASS 0.2375000 0.3905000 0.1062000 0.4215000 0.1022000 0.2428000 36.29 68.82 32 569.30 1.10 53.12 0 53.12 0/1
chr1 43906896 rs2027130 A G . PASS 0.0885000 0.3847000 0.0823000 0.4205000 0.0951000 0.1963000 36.69 70.0 82 1000.00 0.88 47.56 0 47.56 0/1
chr1 43909265 rs2255632 T C . PASS 0.1233000 0.3948000 0.1329000 0.4254000 0.1104000 0.2210000 36.71 70.0 94 1000.00 4.57 43.62 0 43.62 0/1
chr1 43912590 rs2782650 A G . PASS 0.1460000 0.3847000 0.0813000 0.4215000 0.0971000 0.2119000 36.08 70.0 18 444.35 25.64 72.22 0 72.22 0/1
chr1 43917409 rs2251804 T C . PASS 0.1460000 0.3501000 0.0754000 0.4254000 0.1043000 0.2081000 37.0 70.0 79 1000.00 6.36 49.37 0 49.37 0/1
chr1 43917637 rs2251802 G A . PASS 0.1884000 0.3890000 0.0784000 0.4215000 0.0971000 0.2230000 36.74 69.57 93 1000.00 5.49 50.54 0 50.54 0/1
chr1 43919039 . T G . PASS . . . . . . 33.0 70.0 55 137.76 163.64 16.36 0 16.36 0/1
chr1 43919413 rs6692611 A G . PASS 0.6967000 0.6470000 0.5089000 0.6362000 0.4714000 0.5958000 36.4 70.0 117 1000.00 11.20 51.28 0 51.28 0/1
chr1 44035472 rs943513 G A . PASS 0.2927000 0.2464000 0.2143000 0.3579000 0.1176000 0.2494000 36.31 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 44041744 rs45605334 C T . PASS 0.0287000 0.0591000 0.2083000 0.0726000 0.0562000 0.0833000 34.0 70.0 36 479.46 22.22 44.44 0 44.44 0/1
chr1 44070691 rs17371903 A G . PASS 0.0560000 0.2392000 0.2173000 0.3519000 0.1268000 0.1871000 36.81 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 44071221 rs631248 G A . PASS 0.4297000 0.5418000 0.7579000 0.7376000 0.5798000 0.6024000 36.24 69.49 79 1000.00 0.00 100.00 0 100.00 1/1
chr1 44071853 rs512579 T C . PASS 0.9614000 0.6167000 0.7341000 0.7972000 0.5992000 0.7642000 37.0 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 44072420 rs539096 A G . PASS 0.8555000 0.5807000 0.7718000 0.7425000 0.5746000 0.7230000 36.55 70.0 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 44075227 rs517622 T C . PASS 0.9939000 0.9654000 1.0000000 0.9583000 1.0000000 0.9852000 36.04 70.0 25 984.75 0.00 100.00 0 100.00 1/1
chr1 44078384 rs499257 T C . PASS 0.1687000 0.4784000 0.6885000 0.6372000 0.4499000 0.4653000 34.91 70.0 23 877.19 0.00 100.00 0 100.00 1/1
chr1 44078602 rs3791151 C A . PASS 0.0628000 0.2248000 0.2133000 0.3260000 0.1084000 0.1773000 36.33 70.0 18 700.22 0.00 100.00 0 100.00 1/1
chr1 44079411 rs603542 T C . PASS 0.1884000 0.4784000 0.6875000 0.6382000 0.4499000 0.4704000 36.69 70.0 77 1000.00 0.00 100.00 0 100.00 1/1
chr1 44083015 rs653953 G A . PASS 0.6437000 0.5086000 0.6855000 0.6441000 0.4499000 0.5956000 35.91 70.0 33 1000.00 3.98 96.97 0 100.00 1/1
chr1 44083110 rs571862 C T . PASS 0.9455000 0.5764000 0.7649000 0.7167000 0.5634000 0.7374000 36.56 70.0 136 1000.00 0.65 99.26 0 99.26 1/1
chr1 44083507 rs641365 T C . PASS 0.9455000 0.5764000 0.7649000 0.7157000 0.5634000 0.7372000 36.75 70.0 95 1000.00 0.00 100.00 0 100.00 1/1
chr1 44083519 rs641351 G A . PASS 0.9455000 0.5764000 0.7649000 0.7157000 0.5634000 0.7372000 36.33 70.0 89 1000.00 0.00 100.00 0 100.00 1/1
chr1 44084739 rs1143701 C T . PASS 0.9455000 0.5764000 0.7649000 0.7167000 0.5634000 0.7374000 36.64 70.0 99 1000.00 0.00 100.00 0 100.00 1/1
chr1 44086831 rs1143702 C T . PASS 0.5507000 0.5014000 0.6855000 0.6441000 0.4519000 0.5705000 36.28 70.0 117 1000.00 0.00 100.00 0 100.00 1/1
chr1 44137257 rs586339 C A . PASS 0.9478000 0.5591000 0.7946000 0.7028000 0.5706000 0.7402000 36.35 70.0 93 1000.00 0.00 100.00 0 100.00 1/1
chr1 44253015 rs3828139 C T . PASS 0.4697000 0.5043000 0.3750000 0.4881000 0.3415000 0.4341000 36.71 69.51 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 44290530 rs37458 A G . PASS 0.3139000 0.2378000 0.1429000 0.3459000 0.1145000 0.2364000 36.2 70.0 56 1000.00 10.24 53.57 0 53.57 0/1
chr1 44324060 rs3011226 G A . PASS 0.9766000 0.8271000 0.9077000 0.8917000 0.7730000 0.8852000 37.0 70.0 20 799.93 0.00 100.00 0 100.00 1/1
chr1 44386615 rs3120803 A G . PASS 0.6407000 0.8602000 0.8363000 0.9115000 0.8671000 0.8091000 36.73 69.1 89 1000.00 0.00 100.00 0 100.00 1/1
chr1 44387228 rs1636876 T G . PASS 0.4690000 0.8516000 0.8304000 0.9115000 0.8671000 0.7614000 36.76 69.59 98 1000.00 0.00 100.00 0 100.00 1/1
chr1 44395786 rs2108202 C T . PASS 0.1430000 0.6311000 0.6071000 0.7594000 0.6084000 0.5188000 36.6 69.78 91 1000.00 0.00 100.00 0 100.00 1/1
chr1 44401384 rs2242637 A G . PASS 0.7368000 0.8732000 0.8254000 0.9115000 0.8814000 0.8369000 36.58 70.0 86 1000.00 0.00 100.00 0 100.00 1/1
chr1 44402565 rs12127737 G A . PASS 0.1021000 0.6239000 0.6012000 0.7416000 0.6022000 0.5010000 35.0 70.0 12 441.74 0.00 100.00 0 100.00 1/1
chr1 44415415 rs2240447 C T . PASS 0.0877000 0.6167000 0.6161000 0.7634000 0.6104000 0.5052000 36.69 70.0 117 1000.00 0.00 100.00 0 100.00 1/1
chr1 44426025 rs2301993 G A . PASS 0.2269000 0.6282000 0.6151000 0.7634000 0.5982000 0.5409000 37.0 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 44426948 rs2906596 G A . PASS 0.6589000 0.8646000 0.8284000 0.9155000 0.9080000 0.8217000 36.67 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 44432500 rs4660759 C G . PASS 0.2390000 0.6297000 0.6161000 0.7634000 0.6002000 0.5449000 36.52 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 44442521 rs12410334 A C . PASS 0.0946000 0.6513000 0.7361000 0.7992000 0.6933000 0.5593000 37.0 70.0 100 1000.00 0.00 100.00 0 100.00 1/1
chr1 44451112 rs200144349 GGGA G . PASS . . . . . . 36.33 70.0 15 246.99 0.00 60.00 1 100.00 0/1
chr1 44451113 . GG G . PASS . . . . . . 37.0 70.0 14 333.53 0.00 71.43 1 71.43 0/1
chr1 44451114 rs371619921 GA G . PASS 0.6747000 0.7896000 0.8313000 0.8549000 0.8742000 0.7973000 36.57 70.0 14 533.74 0.00 100.00 1 100.00 1/1
chr1 44451124 rs75761202 G T . PASS 0.2080000 0.4683000 0.4226000 0.5437000 0.5020000 0.4121000 33.4 70.0 10 342.04 0.00 100.00 0 100.00 1/1
chr1 44457739 rs11376967,rs72513267 T TC . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 37.0 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 44474336 rs72683980 A G . PASS 0.0008000 0.1182000 0.0040000 0.0080000 0.0010000 0.0191690 37.0 70.0 11 268.58 4.55 72.73 0 72.73 0/1
chr1 44569162 rs1291053 A G . PASS 0.4327000 0.4841000 0.2252000 0.5139000 0.4182000 0.4115000 35.5 70.0 25 214.44 5.00 32.00 0 32.00 0/1
chr1 44587895 rs2485646 C T . PASS 0.0772000 0.4092000 0.1716000 0.3390000 0.3313000 0.2444000 36.37 69.87 65 1000.00 6.40 58.46 0 58.46 0/1
chr1 44595113 rs2429051 G C . PASS 0.2231000 0.5159000 0.6280000 0.6928000 0.5143000 0.4964000 36.45 70.0 140 1000.00 4.29 46.43 0 46.43 0/1
chr1 44595410 rs2485652 A G . PASS 0.0915000 0.2594000 0.4236000 0.3966000 0.2587000 0.2756000 36.23 70.0 67 1000.00 12.23 46.27 0 46.27 0/1
chr1 44595426 rs2429050 G A . PASS 0.0915000 0.2579000 0.4236000 0.3966000 0.2577000 0.2752000 36.17 70.0 62 968.24 15.46 46.77 0 46.77 0/1
chr1 44596379 rs34057178,rs200059598 CCAA C . PASS 0.0719000 0.2723000 0.2887000 0.1750000 0.4110000 0.2302000 35.98 69.95 96 1000.00 0.42 62.50 0 62.50 0/1
chr1 44603506 rs2429060 C T . PASS 0.7148000 0.3818000 0.3016000 0.3002000 0.4693000 0.4543000 36.16 69.53 89 1000.00 8.26 48.31 0 48.31 0/1
chr1 44603745 rs2485651 T G . PASS 0.9077000 0.7450000 0.5794000 0.6034000 0.7434000 0.7258000 35.0 70.0 11 168.88 15.15 54.55 0 54.55 0/1
chr1 44604281 rs113756460,rs61473384 G GGGGCTTTGTAAA . PASS 0.8949000 0.7435000 0.5794000 0.6034000 0.7393000 0.7214000 37.0 70.0 12 117.67 16.67 41.67 0 41.67 0/1
chr1 44604718 . GTT GGC . PASS . . . . . . 36.42 65.87 170 764.34 10.82 18.24 0 19.41 0/1
chr1 44604743 rs144185657 A ATAT . PASS 0.4266000 0.3573000 0.4236000 0.3062000 0.3834000 0.3838000 36.07 69.82 197 1000.00 0.46 55.84 0 56.35 0/1
chr1 44604754 rs55977121 A G . PASS . . . . . . 36.37 69.79 200 1000.00 4.47 47.50 0 47.50 0/1
chr1 44604782 rs57702115 G A . PASS . . . . . . 36.77 69.67 220 1000.00 17.62 23.64 0 23.64 0/1
chr1 44604786 . C T . PASS . . . . . . 36.49 69.4 213 1000.00 13.98 22.07 0 22.07 0/1
chr1 44604791 rs55751755 T C . PASS . . . . . . 37.0 69.62 218 982.20 9.50 18.35 0 18.35 0/1
chr1 44604797 rs58786892 C T . PASS . . . . . . 36.61 69.65 220 588.23 5.95 14.09 0 14.09 0/1
chr1 44604804 rs57391455 T C . PASS . . . . . . 36.37 69.53 223 77.97 3.02 8.52 0 8.52 0/1
chr1 44605006 rs2485649 G A . PASS 0.3079000 0.3530000 0.2996000 0.2863000 0.4714000 0.3401000 35.17 65.35 214 1000.00 6.52 49.07 0 49.07 0/1
chr1 44606000 rs375887615 G A . PASS 0.6513000 0.5231000 0.3730000 0.4145000 0.4806000 0.4966000 36.43 67.24 207 209.69 6.35 10.14 0 10.14 0/1
chr1 44606021 . GCT GTC . PASS . . . . . . 37.0 64.54 172 508.81 12.61 15.12 0 15.12 0/1
chr1 44606031 rs2995020 C T . PASS . . . . . . 35.8 65.2 178 243.21 11.01 11.24 0 11.24 0/1
chr1 44606254 rs2429057 C T . PASS 0.8691000 0.7435000 0.5774000 0.6004000 0.7382000 0.7135000 35.74 62.72 265 1000.00 0.40 35.85 0 35.85 0/1
chr1 44606565 rs2022028 A G . PASS 0.8986000 0.7450000 0.5784000 0.6024000 0.7444000 0.7232000 36.87 69.94 168 1000.00 3.80 55.36 0 55.36 0/1
chr1 44679556 rs803369 A G . PASS 0.9153000 0.7450000 0.5139000 0.6024000 0.7454000 0.7149000 37.0 69.33 49 1000.00 4.22 61.22 0 61.22 0/1
chr1 44685664 rs41270415 C T . PASS 0.0038000 0.0490000 0.0000000 0.0885000 0.0757000 0.0403000 36.75 70.0 102 1000.00 2.45 47.06 0 47.06 0/1
chr1 44686322 rs12419 T C . PASS 0.1876000 0.3357000 0.2371000 0.2584000 0.4018000 0.2742000 36.56 70.0 50 932.82 3.70 54.00 0 54.00 0/1
chr1 45005996 rs272570 G A . PASS 0.0227000 0.3718000 0.4583000 0.1829000 0.3436000 0.2536000 36.13 70.0 69 1000.00 0.00 100.00 0 100.00 1/1
chr1 45205598 rs3820586 T C . PASS 0.4818000 0.2781000 0.2847000 0.1392000 0.1810000 0.2863000 37.0 70.0 51 607.66 0.62 37.25 0 37.25 0/1
chr1 45216038 rs12566610 C G . PASS 0.4818000 0.2781000 0.2847000 0.1392000 0.1810000 0.2863000 35.5 70.0 29 520.40 6.03 55.17 0 55.17 0/1
chr1 45218895 rs3795713 A T . PASS 0.4818000 0.2781000 0.2857000 0.1392000 0.1810000 0.2865000 36.43 70.0 117 1000.00 18.56 53.85 0 53.85 0/1
chr1 45224757 rs16832228 G A . PASS 0.5968000 0.4625000 0.4891000 0.3618000 0.3579000 0.4627000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 45224998 rs4342887 A C . PASS 0.1808000 0.2507000 0.2857000 0.1382000 0.1810000 0.2031000 36.65 70.0 67 1000.00 1.23 50.75 0 50.75 0/1
chr1 45226084 rs1140279 G A . PASS 0.1362000 0.2464000 0.2857000 0.1382000 0.1810000 0.1907000 36.29 70.0 119 1000.00 3.36 42.86 0 42.86 0/1
chr1 45241285 rs12120833 C G . PASS 0.0280000 0.0562000 0.0000000 0.0954000 0.0767000 0.0493000 36.25 70.0 34 517.36 13.97 47.06 0 47.06 0/1
chr1 45241374 rs3806398 G A . PASS 0.0719000 0.1571000 0.1597000 0.2107000 0.1718000 0.1488000 35.91 70.0 17 363.82 3.21 64.71 0 64.71 0/1
chr1 45246242 rs6697153 T A . PASS 0.4667000 0.2752000 0.2857000 0.1392000 0.1759000 0.2812000 36.4 70.0 41 663.37 17.56 48.78 0 48.78 0/1
chr1 45246333 rs112502872 T C . PASS 0.0530000 0.1556000 0.1597000 0.2078000 0.1472000 0.1382000 37.0 69.92 54 891.03 4.27 48.15 0 48.15 0/1
chr1 45250007 rs59895800 C G . PASS 0.0726000 0.1542000 0.1597000 0.2078000 0.1472000 0.1432000 37.0 70.0 51 770.60 14.15 45.10 0 45.10 0/1
chr1 45252015 rs41269079 T A . PASS 0.0530000 0.1542000 0.1597000 0.2078000 0.1472000 0.1380000 35.5 70.0 14 243.39 21.43 57.14 0 57.14 0/1
chr1 45266832 rs17881698 A G . PASS 0.1445000 0.2450000 0.2857000 0.1402000 0.1748000 0.1919000 37.0 69.17 55 804.48 11.21 43.64 0 43.64 0/1
chr1 45269333 rs17886354 A G . PASS 0.0068000 0.0994000 0.0000000 0.1123000 0.0838000 0.0545000 36.73 70.0 87 1000.00 1.15 50.57 0 50.57 0/1
chr1 45270024 rs11211036 G C . PASS 0.1445000 0.2450000 0.2857000 0.1402000 0.1748000 0.1919000 36.56 69.63 94 1000.00 1.02 57.45 0 57.45 0/1
chr1 45271097 rs17883049 G A . PASS 0.1445000 0.2450000 0.2847000 0.1402000 0.1748000 0.1917000 36.33 70.0 66 1000.00 0.51 54.55 0 54.55 0/1
chr1 45271828 rs17885815 T C . PASS 0.0764000 0.1427000 0.1647000 0.1759000 0.1421000 0.1362000 37.0 70.0 110 1000.00 0.73 45.45 0 45.45 0/1
chr1 45271912 rs17886118 G A . PASS 0.0855000 0.2421000 0.2847000 0.1412000 0.1759000 0.1761000 36.33 70.0 52 550.87 21.37 34.62 0 34.62 0/1
chr1 45291908 rs11211040 G A . PASS 0.1558000 0.2450000 0.2887000 0.1412000 0.1748000 0.1957000 35.76 70.0 75 917.10 11.68 38.67 0 38.67 0/1
chr1 45292866 rs2295996 G A . PASS 0.0847000 0.1671000 0.1964000 0.1710000 0.1452000 0.1478000 36.46 70.0 190 1000.00 3.65 46.84 0 46.84 0/1
chr1 45293518 rs7525308 A G . PASS 0.6021000 0.4409000 0.4911000 0.3191000 0.3200000 0.4455000 36.64 70.0 167 1000.00 0.00 100.00 0 100.00 1/1
chr1 45293752 rs2295997 T C . PASS 0.2156000 0.2522000 0.2897000 0.1412000 0.1748000 0.2127000 36.68 70.0 88 1000.00 7.42 43.18 0 43.18 0/1
chr1 45294156 rs2273940 T C . PASS 0.5930000 0.4409000 0.4921000 0.3191000 0.3200000 0.4433000 36.5 69.79 96 1000.00 0.00 100.00 0 100.00 1/1
chr1 45296752 rs2295998 C T . PASS 0.1853000 0.2493000 0.2887000 0.1431000 0.1748000 0.2045000 34.6 70.0 23 291.99 13.04 43.48 0 43.48 0/1
chr1 45297753 rs2295999 A G . PASS 0.4652000 0.2695000 0.2887000 0.1421000 0.1759000 0.2812000 37.0 70.0 32 497.76 14.58 46.88 0 46.88 0/1
chr1 45307506 rs3795720 G A . PASS 0.3306000 0.5086000 0.4454000 0.3151000 0.3139000 0.3720000 36.26 69.69 65 1000.00 0.00 100.00 0 100.00 1/1
chr1 45308409 rs6696675 G A . PASS 0.6104000 0.5303000 0.4524000 0.3201000 0.3139000 0.4513000 36.38 70.0 156 1000.00 0.00 100.00 0 100.00 1/1
chr1 45309541 rs71040512 C CTT . PASS 0.1490000 0.3530000 0.2867000 0.1431000 0.1789000 0.2097000 35.0 70.0 12 189.20 0.00 50.00 0 58.33 0/1
chr1 45340282 rs9988451 C T . PASS 0.6097000 0.5360000 0.4514000 0.3211000 0.3129000 0.4517000 36.33 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 45341186 rs72674089 C T . PASS 0.0000000 0.0000000 0.0000000 0.0030000 0.0000000 0.0005990 37.0 70.0 14 176.01 14.29 42.86 0 42.86 0/1
chr1 45345446 rs3738248 T A . PASS 0.1120000 0.1527000 0.1577000 0.1720000 0.1421000 0.1448000 37.0 68.0 27 299.82 16.30 37.04 0 37.04 0/1
chr1 45362992 rs263978 T C . PASS 0.9705000 0.7565000 0.9742000 0.5239000 0.6595000 0.7911000 36.72 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 45424381 rs471564 A G . PASS 0.2292000 0.1585000 0.1647000 0.1759000 0.1544000 0.1811000 36.0 67.75 22 390.54 22.73 54.55 0 54.55 0/1
chr1 45424509 rs637224 G C . PASS 0.4773000 0.1787000 0.1647000 0.1769000 0.1544000 0.2496000 37.0 70.0 15 294.17 8.89 60.00 0 60.00 0/1
chr1 45444038 rs11556200 G A . PASS 0.4032000 0.4265000 0.2758000 0.1998000 0.1810000 0.2965000 36.65 70.0 63 1000.00 10.64 53.97 0 53.97 0/1
chr1 45457681 rs12126314 G A . PASS 0.5015000 0.4323000 0.2748000 0.1988000 0.1810000 0.3229000 36.4 69.7 39 673.54 7.18 51.28 0 51.28 0/1
chr1 45457708 rs12126318 G A . PASS 0.5045000 0.4323000 0.2748000 0.1988000 0.1810000 0.3237000 35.91 69.68 45 727.01 2.22 48.89 0 48.89 0/1
chr1 45457873 rs401665 G A . PASS 0.6452000 0.5793000 0.4395000 0.3728000 0.3354000 0.4794000 36.37 70.0 19 746.14 0.00 100.00 0 100.00 1/1
chr1 45469155 rs11548990 C T . PASS 0.1044000 0.0692000 0.1171000 0.0676000 0.0450000 0.0831000 36.54 70.0 71 827.84 6.28 36.62 0 36.62 0/1
chr1 45469176 rs12749251 A T . PASS 0.0272000 0.0591000 0.0010000 0.1123000 0.0685000 0.0515000 36.0 70.0 80 1000.00 4.17 60.00 0 60.00 0/1
chr1 45469586 rs41312020 G A . PASS 0.1067000 0.0692000 0.1171000 0.0676000 0.0450000 0.0837000 34.18 70.0 65 1000.00 4.62 52.31 0 52.31 0/1
chr1 45470130 rs7528534 T C . PASS 0.8290000 0.9280000 0.8740000 0.9274000 0.9560000 0.8964000 36.57 70.0 46 986.63 7.45 60.87 0 60.87 0/1
chr1 45472798 . TT T . PASS . . . . . . 35.69 70.0 29 1000.00 0.00 100.00 1 100.00 1/1
chr1 45472798 rs147908761,rs67456297,rs10545690 TTGTGTGTG T . PASS 0.9660000 0.9986000 1.0000000 0.9990000 1.0000000 0.9906000 35.42 70.0 29 346.89 14.37 41.38 1 100.00 0/1
chr1 45472798 . TTGTGTGTG TTGTG . PASS . . . . . . . . 29 346.89 10.14 58.62 1 100.00 0/1
chr1 45472799 . TG T . PASS . . . . . . 35.69 70.0 29 1000.00 0.00 100.00 1 100.00 1/1
chr1 45472800 . GT G . PASS . . . . . . 35.69 70.0 29 1000.00 0.00 100.00 1 100.00 1/1
chr1 45472801 . TG T . PASS . . . . . . 35.69 70.0 29 1000.00 0.00 100.00 1 100.00 1/1
chr1 45474008 rs7541207 T C . PASS 0.1558000 0.4092000 0.2897000 0.2127000 0.2444000 0.2466000 36.71 70.0 54 1000.00 6.32 75.93 0 75.93 0/1
chr1 45474750 rs2275599 A T . PASS 0.4304000 0.4294000 0.2897000 0.2137000 0.2444000 0.3221000 37.0 70.0 33 615.92 9.09 54.55 0 54.55 0/1
chr1 45474755 rs2275598 C G . PASS 0.4304000 0.4294000 0.2897000 0.2137000 0.2444000 0.3221000 37.0 70.0 33 615.92 9.09 54.55 0 54.55 0/1
chr1 45475566 rs6429552 A G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.31 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 45476069 rs7533668 C A . PASS 0.9728000 0.9986000 0.9921000 0.9950000 1.0000000 0.9900000 37.0 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 45476489 rs3806405 A G . PASS 0.4304000 0.4294000 0.2897000 0.2137000 0.2444000 0.3221000 37.0 70.0 17 250.52 32.35 47.06 0 47.06 0/1
chr1 45476663 rs2298005 G A . PASS 0.1732000 0.4107000 0.2897000 0.2127000 0.2434000 0.2512000 35.91 70.0 45 727.02 6.67 48.89 0 48.89 0/1
chr1 45479499 rs2234480 G C . PASS 0.1528000 0.0706000 0.1171000 0.0646000 0.0450000 0.0954000 36.27 70.0 73 1000.00 6.56 45.21 0 45.21 0/1
chr1 45479709 rs2228084 A G . PASS 0.1528000 0.0706000 0.1171000 0.0646000 0.0450000 0.0954000 36.72 70.0 80 1000.00 3.43 53.75 0 53.75 0/1
chr1 45479772 rs11211066 G T . PASS 0.1551000 0.4107000 0.2887000 0.2087000 0.2444000 0.2456000 35.67 70.0 44 922.72 10.61 61.36 0 61.36 0/1
chr1 45480733 rs6429553 C T . PASS 0.9728000 0.9986000 1.0000000 1.0000000 1.0000000 0.9926000 35.65 70.0 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 45485710 rs3831961 TG T . PASS 0.0552000 0.0648000 0.1171000 0.0646000 0.0450000 0.0689000 37.0 70.0 34 315.11 3.21 32.35 0 32.35 0/1
chr1 45486272 rs998418 T C . PASS 0.4766000 0.5620000 0.7024000 0.7813000 0.7495000 0.6484000 37.0 68.75 43 506.43 8.43 37.21 0 37.21 0/1
chr1 45504806 rs72684426 C T . PASS 0.0129000 0.0591000 0.1181000 0.0646000 0.0348000 0.0551000 37.0 69.62 113 1000.00 2.91 46.90 0 46.90 0/1
chr1 45524213 rs3738246 C T . PASS 0.8956000 0.8588000 0.8690000 0.8350000 0.9356000 0.8808000 37.0 70.0 21 363.80 12.12 52.38 0 52.38 0/1
chr1 45536004 rs346702 A G . PASS 0.7239000 0.8429000 0.8661000 0.8300000 0.9356000 0.8317000 36.43 69.05 53 673.17 1.08 39.62 0 39.62 0/1
chr1 45671966 rs4454584 A G . PASS 0.5620000 0.2147000 0.1369000 0.2634000 0.1278000 0.2835000 36.71 70.0 83 1000.00 0.00 100.00 0 100.00 1/1
chr1 45796269 rs3219493 G C . PASS 0.9705000 0.9352000 0.9137000 0.9205000 0.9254000 0.9353000 36.14 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 45797505 rs3219489 C G . PASS 0.2579000 0.4841000 0.3909000 0.2445000 0.2587000 0.3135000 37.0 70.0 51 854.13 1.57 49.02 0 49.02 0/1
chr1 45798555 rs3219487 T C . PASS 0.9766000 0.9366000 0.9137000 0.9205000 0.9254000 0.9371000 36.81 70.0 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 45813441 rs2298018 T C . PASS 0.6467000 0.5072000 0.3859000 0.2455000 0.2607000 0.4189000 37.0 70.0 18 289.28 11.11 50.00 0 50.00 0/1
chr1 45880751 rs781230 C T . PASS 0.4100000 0.6412000 0.6200000 0.7604000 0.7239000 0.6160000 34.82 69.82 16 354.83 17.05 68.75 0 68.75 0/1
chr1 45887288 rs3790582 T C . PASS 0.2632000 0.3429000 0.3492000 0.2366000 0.2720000 0.2879000 37.0 70.0 11 143.27 0.00 45.45 0 45.45 0/1
chr1 45965340 rs7546268 T C . PASS 0.8616000 0.8372000 0.9444000 0.6978000 0.7761000 0.8253000 37.0 70.0 18 716.39 0.00 100.00 0 100.00 1/1
chr1 45981258 rs7516006 A G . PASS 0.8616000 0.8372000 0.9444000 0.6978000 0.7761000 0.8253000 37.0 70.0 18 716.39 0.00 100.00 0 100.00 1/1
chr1 45981270 . C CAAAAAAAAAAAAA . PASS . . . . . . 36.19 70.0 18 677.79 0.00 88.89 0 100.00 1/1
chr1 45981295 . G A . PASS . . . . . . 37.0 70.0 11 59.74 109.09 27.27 0 27.27 0/1
chr1 45981512 rs2356559 T C . PASS 0.8563000 0.8372000 0.9216000 0.6958000 0.7740000 0.8185000 37.0 69.13 23 925.24 0.00 100.00 0 100.00 1/1
chr1 46081940 rs2356581 T A . PASS 0.9985000 0.9899000 0.9931000 0.9682000 0.9714000 0.9848000 37.0 70.0 11 419.85 0.00 100.00 0 100.00 1/1
chr1 46094027 rs1250 A G . PASS 0.2648000 0.3458000 0.3472000 0.2823000 0.3998000 0.3225000 36.36 70.0 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 46095272 rs1135812 T C . PASS 0.2670000 0.3473000 0.3165000 0.2833000 0.4090000 0.3191000 36.62 68.75 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 46117161 rs4607935 C T . PASS 0.2670000 0.3473000 0.3155000 0.2833000 0.4131000 0.3197000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 46117185 rs4609469 C T . PASS 0.2670000 0.3473000 0.3413000 0.2863000 0.4151000 0.3259000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 46124663 rs6671802 A G . PASS 0.5779000 0.4942000 0.3532000 0.5288000 0.5378000 0.5034000 36.56 70.0 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 46195211 rs372814348,rs139068713 TAAC T . PASS 0.2504000 0.3473000 0.3046000 0.2833000 0.4121000 0.3129000 36.67 70.0 18 659.05 0.00 100.00 0 100.00 1/1
chr1 46195375 rs28375469 T C . PASS 0.2504000 0.3473000 0.3135000 0.2833000 0.4131000 0.3149000 36.25 70.0 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 46206540 rs28507722 A G . PASS 0.2504000 0.3473000 0.3135000 0.2833000 0.4131000 0.3149000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 46290311 rs10561161,rs34699982 GTA G . PASS 0.4713000 0.3790000 0.2976000 0.2694000 0.4376000 0.3764000 36.76 70.0 25 909.67 0.00 100.00 0 100.00 1/1
chr1 46472153 rs6429592 G A . PASS 0.9221000 0.8674000 0.9841000 0.7177000 0.8630000 0.8744000 35.5 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 46473902 rs3922886 A T . PASS 0.4402000 0.3833000 0.2917000 0.2694000 0.4335000 0.3668000 35.74 70.0 19 729.98 0.00 100.00 0 100.00 1/1
chr1 46476587 rs11211247 T G . PASS 0.9221000 0.8674000 0.9841000 0.7177000 0.8630000 0.8744000 36.76 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 46629653 rs6671303 A C . PASS 0.5968000 0.5533000 0.4306000 0.5924000 0.6943000 0.5755000 36.76 70.0 100 1000.00 0.00 100.00 0 100.00 1/1
chr1 46629690 rs12029134 A C . PASS 0.4501000 0.3084000 0.3810000 0.1362000 0.4673000 0.3568000 36.87 70.0 95 1000.00 0.00 100.00 0 100.00 1/1
chr1 46629713 rs1891337 G A . PASS 0.8071000 0.9856000 1.0000000 0.9990000 1.0000000 0.9469000 36.32 70.0 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 46641424 rs68179532 G A . PASS 0.1959000 0.2219000 0.1260000 0.0746000 0.1820000 0.1583000 34.6 70.0 10 358.20 0.00 100.00 0 100.00 1/1
chr1 46641827 rs12030928 A G . PASS 0.2103000 0.3184000 0.3998000 0.1909000 0.5112000 0.3183000 36.35 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 46650191 rs35321971 C CG . PASS 0.0696000 0.2550000 0.1736000 0.1014000 0.1380000 0.1360000 36.54 70.0 23 909.65 0.00 100.00 0 100.00 1/1
chr1 46655158 rs6659553 T C . PASS 0.7890000 0.9870000 1.0000000 1.0000000 1.0000000 0.9425000 36.78 70.0 165 1000.00 0.00 100.00 0 100.00 1/1
chr1 46657651 rs7521880 T C . PASS 0.3343000 0.3963000 0.1726000 0.3549000 0.4325000 0.3337000 35.8 70.0 10 370.22 0.00 100.00 0 100.00 1/1
chr1 46658328 rs2292484 A G . PASS 0.3343000 0.3963000 0.1726000 0.3549000 0.4315000 0.3335000 35.94 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 46658343 rs2292485 G A . PASS 0.3343000 0.3963000 0.1726000 0.3549000 0.4315000 0.3335000 37.0 70.0 19 758.16 0.00 100.00 0 100.00 1/1
chr1 46659104 rs7527668 T C . PASS 0.4584000 0.4020000 0.1726000 0.3549000 0.4315000 0.3670000 37.0 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 46659363 rs7527935 T C . PASS 0.3343000 0.3963000 0.1726000 0.3549000 0.4315000 0.3335000 37.0 70.0 18 716.39 0.00 100.00 0 100.00 1/1
chr1 46660295 rs2292487 T C . PASS 0.3343000 0.3963000 0.1726000 0.3549000 0.4315000 0.3335000 36.57 69.88 166 1000.00 0.00 100.00 0 100.00 1/1
chr1 46827214 rs324414 A C . PASS 1.0000000 1.0000000 1.0000000 0.9891000 0.9939000 0.9966000 36.52 70.0 25 992.61 0.00 100.00 0 100.00 1/1
chr1 46870761 rs324420 C A . PASS 0.3676000 0.3516000 0.1756000 0.2107000 0.1953000 0.2616000 36.52 69.8 100 1000.00 0.00 100.00 0 100.00 1/1
chr1 46871197 . C G . PASS . . . . . . 31.0 70.0 33 78.65 139.39 18.18 0 18.18 0/1
chr1 46871202 . C G . PASS . . . . . . 34.6 70.0 29 72.94 151.72 17.24 0 17.24 0/1
chr1 46871986 rs324419 T C . PASS 0.8585000 0.9265000 0.9950000 0.8519000 0.8088000 0.8844000 36.88 70.0 102 1000.00 0.00 100.00 0 100.00 1/1
chr1 46874279 rs45497198 G A . PASS 0.0008000 0.0173000 0.0000000 0.0229000 0.0123000 0.0095847 36.73 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 46944805 rs4660939 C T . PASS 0.4894000 0.4409000 0.5089000 0.5954000 0.5337000 0.5166000 36.46 70.0 133 1000.00 0.00 100.00 0 100.00 1/1
chr1 46972605 rs12127101 T A . PASS 0.3744000 0.1801000 0.2460000 0.1829000 0.2873000 0.2662000 35.91 70.0 11 407.83 0.00 100.00 0 100.00 1/1
chr1 46972958 rs35270239 A G . PASS 0.3744000 0.1801000 0.2460000 0.1829000 0.2873000 0.2662000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 46976530 rs12045200 C G . PASS 0.4924000 0.1916000 0.2718000 0.1759000 0.2863000 0.3025000 37.0 70.0 22 879.32 0.00 100.00 0 100.00 1/1
chr1 46976717 rs12045245 C T . PASS 0.4924000 0.1916000 0.2718000 0.1750000 0.2883000 0.3027000 37.0 69.73 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 47013364 rs1258041 T C . PASS 0.9871000 0.9957000 0.6905000 0.9911000 0.8845000 0.9093000 36.6 70.0 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 47014821 . A AAAAAG . PASS 0.6475000 0.7493000 0.3204000 0.6670000 0.4387000 0.5589000 36.03 70.0 50 1000.00 3.00 80.00 0 98.00 0/1
chr1 47059934 rs1258021 T C . PASS 0.9902000 0.9986000 1.0000000 0.9980000 0.9990000 0.9966000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 47075932 rs3818323 C T . PASS 0.3684000 0.3386000 0.2371000 0.2684000 0.2178000 0.2883000 37.0 68.46 13 507.53 0.00 100.00 0 100.00 1/1
chr1 47078637 rs4660947 T C . PASS 0.5779000 0.5677000 0.9583000 0.5000000 0.7607000 0.6731000 36.22 70.0 110 1000.00 0.00 98.18 0 98.18 1/1
chr1 47080665 rs11211328 C T . PASS 0.2413000 0.3271000 0.2460000 0.2654000 0.2188000 0.2546000 36.29 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 47080679 rs6671527 G A . PASS 0.5643000 0.5202000 0.9256000 0.4751000 0.7137000 0.6422000 37.0 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 47080741 rs12029680 C T . PASS 0.5272000 0.3516000 0.2460000 0.2684000 0.2198000 0.3343000 36.64 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 47108828 rs736188 T C . PASS 0.5393000 0.9323000 0.5754000 0.9841000 0.8528000 0.7516000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 47110712 rs1258053 C T . PASS 0.3533000 0.5346000 0.2004000 0.6849000 0.5920000 0.4609000 35.8 70.0 10 370.22 0.00 100.00 0 100.00 1/1
chr1 47110766 rs3215990 G GC . PASS 0.5363000 0.9323000 0.5754000 0.9841000 0.8528000 0.7508000 36.59 70.0 25 981.17 0.00 100.00 0 100.00 1/1
chr1 47123898 rs3214697,rs67089539 T TA . PASS . . . . . . 35.15 70.0 29 1000.00 1.86 89.66 0 96.55 1/1
chr1 47208815 rs138404421 TG T . PASS 0.0098000 0.0965000 0.0565000 0.1928000 0.2791000 0.1206000 35.8 70.0 10 360.66 0.00 100.00 0 100.00 1/1
chr1 47264724 rs2297813 G T . PASS 0.0348000 0.1470000 0.1696000 0.0835000 0.0521000 0.0907000 36.55 69.62 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 47276728 rs2297812 G C . PASS 0.6959000 0.3862000 0.5556000 0.3370000 0.4059000 0.4960000 36.69 70.0 156 1000.00 0.00 100.00 0 100.00 1/1
chr1 47279789 rs2297811 C T . PASS 0.0204000 0.1945000 0.2510000 0.1471000 0.1636000 0.1444000 36.75 70.0 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 47280746 rs3215983 GAT G . PASS 0.0386000 0.1816000 0.2550000 0.1302000 0.1155000 0.1354000 35.83 70.0 80 1000.00 0.00 100.00 0 100.00 1/1
chr1 47280859 rs2297810 G A . PASS 0.4614000 0.2334000 0.2808000 0.1312000 0.1728000 0.2708000 36.73 70.0 89 1000.00 0.00 100.00 0 100.00 1/1
chr1 47280884 rs4646491 C T . PASS 0.0386000 0.1816000 0.2550000 0.1302000 0.1135000 0.1350000 36.15 70.0 85 1000.00 0.00 100.00 0 100.00 1/1
chr1 47282772 rs2297809 C T . PASS 0.1256000 0.1859000 0.2540000 0.1302000 0.1135000 0.1583000 36.74 70.0 92 1000.00 0.00 100.00 0 100.00 1/1
chr1 47282888 rs35333582 C T . PASS 0.0416000 0.1744000 0.2073000 0.1282000 0.1166000 0.1254000 37.0 70.0 19 758.16 0.00 100.00 0 100.00 1/1
chr1 47308949 rs11211377 C A . PASS 0.0416000 0.1787000 0.2569000 0.1302000 0.1145000 0.1360000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 47333836 rs4660963 G C . PASS 0.9576000 0.5159000 0.8938000 0.4304000 0.7515000 0.7374000 36.2 69.67 15 574.91 0.00 100.00 0 100.00 1/1
chr1 47338888 rs3117715 C A . PASS 0.6430000 0.3098000 0.5020000 0.2227000 0.3374000 0.4243000 37.0 65.47 32 493.62 7.50 46.88 0 46.88 0/1
chr1 47366050 rs12032026 G T . PASS 0.0061000 0.1455000 0.1925000 0.0805000 0.0695000 0.0903000 37.0 68.68 64 815.00 4.38 39.06 0 39.06 0/1
chr1 47395973 rs1126743 G A . PASS 0.3449000 0.6830000 0.4950000 0.7773000 0.6656000 0.5715000 37.0 69.08 120 1000.00 5.69 42.50 0 42.50 0/1
chr1 47396115 rs9333033 A T . PASS 0.0862000 0.1527000 0.1925000 0.0795000 0.0685000 0.1120000 35.29 65.14 10 213.66 0.00 70.00 0 70.00 0/1
chr1 47398743 rs3890011 G C . PASS 0.3449000 0.6830000 0.4960000 0.7763000 0.6656000 0.5715000 37.0 69.54 65 1000.00 0.42 56.92 0 56.92 0/1
chr1 47399967 rs28451040 G A . PASS 0.5280000 0.3112000 0.5040000 0.2237000 0.3344000 0.3942000 36.17 59.24 68 950.18 9.43 42.65 0 42.65 0/1
chr1 47400059 rs71500102 A G . PASS 0.9213000 0.9957000 1.0000000 1.0000000 1.0000000 0.9786000 36.05 54.21 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 47402487 . TT T . PASS . . . . . . 36.73 70.0 46 732.46 5.53 47.83 1 47.83 0/1
chr1 47402487 rs72276548,rs67512144 TTGTG T . PASS . . . . . . 36.7 70.0 47 651.92 0.85 42.55 1 46.81 0/1
chr1 47402488 . TG T . PASS . . . . . . 36.73 70.0 45 735.46 7.27 48.89 1 48.89 0/1
chr1 47489786 rs2036462 T C . PASS 0.3880000 0.3660000 0.6915000 0.3032000 0.5409000 0.4589000 37.0 70.0 16 337.07 0.00 62.50 0 62.50 0/1
chr1 47495822 rs12141009 C T . PASS 0.1203000 0.3184000 0.6925000 0.2425000 0.5235000 0.3662000 35.96 70.0 50 753.73 6.26 46.00 0 46.00 0/1
chr1 47515596 rs1393659 A C . PASS 0.5182000 0.4582000 0.9722000 0.3221000 0.6288000 0.5835000 37.0 70.0 14 130.09 17.14 35.71 0 35.71 0/1
chr1 47540548 rs146654636 C T . PASS . . . . . . 36.56 61.15 64 890.68 4.05 42.19 0 42.19 0/1
chr1 47550246 rs201981953 G GA . PASS 0.4977000 0.4424000 0.9712000 0.3131000 0.6053000 0.5693000 37.0 47.25 35 222.53 35.56 25.71 0 25.71 0/1
chr1 47571902 rs4926802 C T . PASS 0.5121000 0.4683000 0.9563000 0.3400000 0.6595000 0.5897000 36.61 66.19 85 994.57 2.05 36.47 0 36.47 0/1
chr1 47571905 rs28463559 C T . PASS 0.4766000 0.4654000 0.9563000 0.3390000 0.6585000 0.5795000 36.2 66.07 77 964.87 7.97 38.96 0 38.96 0/1
chr1 47571996 rs4926804 T C . PASS 0.5182000 0.4712000 0.9643000 0.3410000 0.6687000 0.5952000 37.0 68.0 21 113.17 28.57 23.81 0 23.81 0/1
chr1 47582242 rs56709867,rs145561171 ATTTCGT A . PASS 0.2980000 0.3401000 0.6687000 0.2485000 0.5051000 0.4089000 34.82 69.0 22 549.78 19.25 77.27 0 77.27 0/1
chr1 47582292 rs10890465 T G . PASS 0.5076000 0.4683000 0.9722000 0.3400000 0.6687000 0.5935000 36.14 69.0 39 991.55 6.78 71.79 0 71.79 0/1
chr1 47583415 rs6664496 G T . PASS 0.5076000 0.4683000 0.9722000 0.3400000 0.6687000 0.5935000 35.91 70.0 24 338.60 20.45 45.83 0 45.83 0/1
chr1 47603033 rs34164833 GT G . PASS 0.5008000 0.4640000 0.9335000 0.3479000 0.6452000 0.5803000 31.8 70.0 10 110.70 0.00 50.00 0 50.00 0/1
chr1 47607851 rs2056899 A T . PASS 0.9440000 0.5072000 0.9802000 0.4036000 0.6810000 0.7308000 36.51 65.59 130 1000.00 3.25 56.15 0 56.15 0/1
chr1 47609091 rs146396590 G A . PASS 0.1725000 0.1671000 0.3194000 0.1402000 0.0971000 0.1801000 36.05 60.11 64 1000.00 5.10 59.38 0 59.38 0/1
chr1 47609489 rs10789501 T C . PASS 0.5015000 0.4640000 0.9335000 0.3489000 0.6452000 0.5807000 36.53 68.99 167 1000.00 5.10 46.11 0 46.11 0/1
chr1 47609668 rs911909 T C . PASS 0.4977000 0.4640000 0.9335000 0.3489000 0.6452000 0.5797000 37.0 69.7 35 697.59 7.14 57.14 0 57.14 0/1
chr1 47610293 rs968322 C T . PASS . . . . . . 36.02 59.0 142 1000.00 4.46 42.96 0 42.96 0/1
chr1 47614185 rs760440 G C . PASS 0.5000000 0.4640000 0.9315000 0.3519000 0.6575000 0.5829000 35.67 66.67 19 270.11 11.70 47.37 0 47.37 0/1
chr1 47614485 rs72684327 A G . PASS 0.2572000 0.1801000 0.3194000 0.1541000 0.1196000 0.2115000 37.0 68.33 89 1000.00 5.44 50.56 0 50.56 0/1
chr1 47645995 rs2245122 T C . PASS 0.6445000 0.5821000 0.6339000 0.5865000 0.5061000 0.5950000 36.68 70.0 74 1000.00 2.84 51.35 0 51.35 0/1
chr1 47685455 rs927462 T C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.69 70.0 119 1000.00 0.85 99.16 0 99.16 1/1
chr1 47689842 rs34087210 C G . PASS 0.2300000 0.4164000 0.0139000 0.6034000 0.4284000 0.3261000 33.57 70.0 21 168.54 19.05 33.33 0 33.33 0/1
chr1 47690992 rs2181222 C G . PASS 0.6710000 0.2723000 0.6984000 0.2873000 0.4632000 0.5036000 37.0 70.0 10 267.45 5.00 80.00 0 80.00 0/1
chr1 47691568 rs145295250 GCAGA G . PASS 0.1188000 0.3876000 0.0129000 0.5676000 0.3630000 0.2726000 35.14 67.73 124 1000.00 16.13 35.48 0 35.48 0/1
chr1 47717189 rs2758735 A G . PASS 0.1218000 0.4078000 0.4296000 0.5427000 0.5593000 0.3934000 35.0 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 47735280 rs2742104 T C . PASS 0.1218000 0.4092000 0.4325000 0.5437000 0.5593000 0.3944000 37.0 70.0 20 799.93 0.00 100.00 0 100.00 1/1
chr1 47841038 rs3214951 G GA . PASS 0.0272000 0.3977000 0.2183000 0.5408000 0.4489000 0.3025000 36.0 70.0 11 408.41 0.00 100.00 0 100.00 1/1
chr1 47842431 rs3125648 G A . PASS 0.8381000 0.9769000 1.0000000 0.9980000 1.0000000 0.9537000 36.02 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 47882497 rs34082359 C T . PASS 0.2315000 0.2378000 0.2123000 0.3569000 0.3589000 0.2786000 36.11 70.0 79 833.53 0.28 34.18 0 34.18 0/1
chr1 47883019 rs6666370 T C . PASS 0.6619000 0.7709000 0.7163000 0.9264000 0.9479000 0.7969000 37.0 70.0 25 1000.00 0.00 100.00 0 100.00 1/1
chr1 47883024 rs2820969 A G . PASS 0.9811000 1.0000000 1.0000000 0.9990000 1.0000000 0.9948000 36.45 70.0 22 829.68 0.00 95.45 0 100.00 1/1
chr1 47904000 rs78469326 G A . PASS 0.0696000 0.0562000 0.1796000 0.0755000 0.2382000 0.1240000 37.0 70.0 52 688.19 6.41 40.38 0 40.38 0/1
chr1 47904668 rs71053113,rs3046924 T TCCGCAC . PASS 0.9107000 0.9827000 0.9881000 0.9920000 0.9714000 0.9645000 36.48 70.0 109 1000.00 3.63 96.33 0 98.17 1/1
chr1 47904909 rs2405913 G C . PASS 0.9985000 1.0000000 1.0000000 1.0000000 1.0000000 0.9996000 35.93 69.64 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 47907662 rs1316443 A C . PASS 0.3434000 0.5274000 0.3988000 0.5636000 0.5859000 0.4716000 36.8 70.0 122 1000.00 1.92 48.36 0 48.36 0/1
chr1 48043137 rs71572665,rs10641811 C CGAT . PASS . . . . . . 37.0 70.0 10 252.00 0.00 80.00 0 80.00 0/1
chr1 48260547 rs55812379 G A . PASS 0.0023000 0.0216000 0.0000000 0.0497000 0.0051000 0.0145770 37.0 70.0 12 56.72 16.67 25.00 0 25.00 0/1
chr1 48459907 rs3814006 C T . PASS 0.0144000 0.2233000 0.2530000 0.2793000 0.1227000 0.1657000 36.71 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 48555251 rs545475 A T . PASS 0.4024000 0.4409000 0.3700000 0.3151000 0.5429000 0.4111000 36.66 69.89 82 1000.00 5.37 42.68 0 42.68 0/1
chr1 48555320 rs4926510 G A . PASS 0.5998000 0.7839000 0.9722000 0.7078000 0.7904000 0.7592000 36.29 70.0 32 569.30 14.71 53.12 0 53.12 0/1
chr1 48588004 rs214203 C T . PASS 0.6657000 0.6282000 0.5645000 0.4364000 0.4192000 0.5459000 36.47 70.0 75 1000.00 0.00 60.00 0 60.00 0/1
chr1 48697733 rs212991 T G . PASS 1.0000000 0.9986000 1.0000000 0.9980000 1.0000000 0.9994000 37.0 70.0 114 1000.00 0.00 100.00 0 100.00 1/1
chr1 48697751 rs61997212 C T . PASS 0.0174000 0.0879000 0.0000000 0.1700000 0.0767000 0.0659000 37.0 70.0 120 1000.00 1.03 43.33 0 43.33 0/1
chr1 48764419 rs1056042 C T . PASS 0.0250000 0.3329000 0.3492000 0.4254000 0.3354000 0.2740000 36.17 69.72 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 48902552 rs78784453 G A . PASS 0.0250000 0.3329000 0.3462000 0.4235000 0.3333000 0.2726000 35.84 68.94 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 48902977 rs2261674 G C . PASS 0.9274000 0.9942000 1.0000000 1.0000000 1.0000000 0.9800000 35.91 68.64 11 407.83 0.00 100.00 0 100.00 1/1
chr1 48917316 rs200183446 A T . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 70.0 11 264.43 27.27 72.73 0 72.73 0/1
chr1 48937691 rs2275309 A T . PASS 0.0250000 0.3386000 0.3452000 0.4284000 0.3292000 0.2734000 36.69 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 48996880 . TC T . PASS . . . . . . 36.27 70.0 57 853.43 12.96 45.61 0 45.61 0/1
chr1 49052933 rs2803277 T C . PASS 0.4342000 0.3170000 0.0516000 0.3559000 0.5286000 0.3437000 36.14 70.0 14 537.29 0.00 100.00 0 100.00 1/1
chr1 49056695 rs7543402 T C . PASS 0.4349000 0.3141000 0.0506000 0.3489000 0.5276000 0.3417000 37.0 69.23 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 49100332 rs319983 C T . PASS 0.1755000 0.4914000 0.2857000 0.6004000 0.5297000 0.3960000 37.0 70.0 27 429.27 19.94 48.15 0 48.15 0/1
chr1 49224584 rs1128934 G T . PASS 0.6082000 0.7795000 0.5327000 0.8847000 0.6984000 0.6899000 36.7 70.0 98 1000.00 6.12 40.82 0 40.82 0/1
chr1 49242211 rs12073598 C T . PASS 0.1505000 0.1527000 0.1597000 0.0557000 0.0757000 0.1190000 36.08 70.0 33 399.21 19.58 39.39 0 39.39 0/1
chr1 49511424 rs3934240 A G . PASS 0.0401000 0.2608000 0.4246000 0.1889000 0.2812000 0.2250000 36.65 70.0 71 1000.00 2.40 47.89 0 47.89 0/1
chr1 50311454 rs4926833 G A . PASS 0.7973000 0.6167000 0.2460000 0.6561000 0.4980000 0.5745000 37.0 70.0 15 381.85 10.91 73.33 0 73.33 0/1
chr1 50572096 rs12138061 C A . PASS 0.0416000 0.2666000 0.3482000 0.1869000 0.2904000 0.2123000 36.48 70.0 55 746.54 10.59 41.82 0 41.82 0/1
chr1 50592601 rs2494887 G C . PASS 0.3623000 0.5130000 0.5397000 0.4761000 0.5838000 0.4850000 36.25 70.0 37 508.33 16.89 43.24 0 43.24 0/1
chr1 50661411 rs2480683 C T . PASS 0.3729000 0.9366000 0.9990000 0.9712000 0.9836000 0.8165000 36.16 70.0 86 1000.00 0.00 100.00 0 100.00 1/1
chr1 50666515 rs2494876 C T . PASS 0.3442000 0.8804000 0.6528000 0.9006000 0.8804000 0.6971000 36.49 70.0 118 1000.00 0.00 100.00 0 100.00 1/1
chr1 50871536 rs2784159 T C . PASS 0.6899000 0.8646000 0.8423000 0.8300000 0.8548000 0.8051000 36.14 69.93 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 50871575 rs2653907 T C . PASS 0.6906000 0.8646000 0.8433000 0.8300000 0.8548000 0.8055000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 50884778 rs2746610 G A . PASS . . . . . . 36.63 70.0 138 1000.00 0.13 93.48 0 93.48 1/1
chr1 50956212 rs149582773 C CAAATACAGTGG . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.41 70.0 19 725.56 0.00 100.00 0 100.00 1/1
chr1 50957509 rs1149790 A T . PASS 0.9841000 0.9452000 1.0000000 0.9076000 0.8170000 0.9339000 36.11 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 51435946 rs41285700 C T . PASS 0.0000000 0.0086000 0.0000000 0.0288000 0.0164000 0.0101840 34.0 70.0 14 235.54 7.14 57.14 0 57.14 0/1
chr1 51753904 rs17392930 G A . PASS 0.0008000 0.0159000 0.0000000 0.0567000 0.0337000 0.0204000 36.76 69.6 92 1000.00 9.39 54.35 0 54.35 0/1
chr1 51826921 rs17567 T C . PASS 0.5673000 0.1643000 0.0119000 0.2038000 0.0900000 0.2334000 36.61 70.0 83 1000.00 18.11 37.35 0 37.35 0/1
chr1 51873951 rs1065754 G A . PASS 0.8941000 0.7622000 0.9921000 0.6223000 0.8006000 0.8227000 36.61 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 51905949 rs372668692,rs67312101,rs66883041 CTGTG C . PASS . . . . . . 34.32 70.0 27 580.54 1.56 70.37 0 70.37 0/1
chr1 51912788 . GA G . PASS . . . . . . 37.0 70.0 29 622.54 2.30 62.07 0 62.07 0/1
chr1 51929504 rs5774101 TA T . PASS 0.6172000 0.1643000 0.0119000 0.2038000 0.0879000 0.2462000 36.14 70.0 18 190.19 12.70 38.89 0 38.89 0/1
chr1 52266242 rs8375 G A . PASS 0.2224000 0.5937000 0.8234000 0.5298000 0.3885000 0.4890000 36.41 70.0 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 52279650 rs2982846 T G . PASS 0.9115000 0.8271000 0.9831000 0.6889000 0.7321000 0.8345000 35.91 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 52290984 rs11205896 T G . PASS 0.2496000 0.6009000 0.8313000 0.5239000 0.3926000 0.4984000 36.65 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 52293570 rs2077725 G A . PASS 0.4047000 0.7709000 0.9256000 0.6362000 0.4959000 0.6246000 37.0 70.0 20 799.93 0.00 100.00 0 100.00 1/1
chr1 52306063 rs35723519,rs60220085 ATCT A . PASS 0.3132000 0.6888000 0.9256000 0.5457000 0.4489000 0.5617000 35.45 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 52344414 rs736756 A C . PASS 0.2496000 0.6066000 0.8313000 0.5268000 0.3926000 0.4998000 37.0 70.0 19 754.01 0.00 100.00 0 100.00 1/1
chr1 52402956 rs10888742 G A . PASS 0.6831000 0.9539000 0.9970000 0.9503000 0.9090000 0.8816000 35.98 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 52535971 rs138950929 ATTGGTATAATAGTTCAT A . PASS 0.4849000 0.5922000 0.5565000 0.6193000 0.6074000 0.5651000 35.06 70.0 41 1000.00 0.74 80.49 0 80.49 0/1
chr1 52625895 rs597405 G A . PASS 0.9448000 0.9784000 1.0000000 0.9801000 0.9959000 0.9776000 37.0 69.32 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 52626181 rs573219 T C . PASS 0.9652000 0.9798000 1.0000000 0.9801000 0.9959000 0.9832000 37.0 69.81 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 52626183 rs573221 G A . PASS 0.9410000 0.9769000 0.9980000 0.9781000 0.9939000 0.9752000 35.56 69.8 25 972.74 0.00 100.00 0 100.00 1/1
chr1 52729432 rs3833531 C G . PASS 0.0159000 0.4669000 0.4851000 0.3598000 0.2628000 0.2901000 36.2 70.0 36 1000.00 31.11 83.33 0 83.33 0/1
chr1 52820226 rs2820334 G A . PASS 0.9811000 0.9986000 1.0000000 1.0000000 1.0000000 0.9948000 37.0 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 52943225 rs835033 C A . PASS 0.0310000 0.5202000 0.7173000 0.3837000 0.4039000 0.3806000 37.0 70.0 12 461.62 0.00 100.00 0 100.00 1/1
chr1 52991638 rs12123698 C T . PASS 0.0151000 0.5072000 0.4306000 0.3698000 0.2597000 0.2859000 36.85 69.75 80 1000.00 0.00 100.00 0 100.00 1/1
chr1 53072454 rs1970951 T C . PASS 0.9743000 0.8790000 0.7996000 0.8410000 0.8661000 0.8780000 36.84 70.0 77 1000.00 0.00 100.00 0 100.00 1/1
chr1 53072741 rs1970950 A G . PASS 0.9107000 0.8012000 0.7986000 0.7465000 0.8057000 0.8195000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 53099085 rs142476797 C T . PASS 0.0023000 0.0216000 0.0198000 0.0318000 0.0460000 0.0230000 36.33 70.0 33 608.06 4.04 54.55 0 54.55 0/1
chr1 53175099 rs12726160 A G . PASS 0.3502000 0.3213000 0.0179000 0.5070000 0.3845000 0.3175000 37.0 68.18 22 360.78 0.00 50.00 0 50.00 0/1
chr1 53237721 rs1412706 G A . PASS 0.9085000 0.6729000 0.9792000 0.4284000 0.5061000 0.7151000 34.6 70.0 13 125.24 24.62 38.46 0 38.46 0/1
chr1 53237763 rs960570 A G . PASS 0.0318000 0.4769000 0.3948000 0.3479000 0.3344000 0.2891000 37.0 70.0 19 286.27 12.87 47.37 0 47.37 0/1
chr1 53238324 rs12563825 G T . PASS 0.0893000 0.4856000 0.3938000 0.3479000 0.3333000 0.3051000 37.0 70.0 12 177.88 0.00 50.00 0 50.00 0/1
chr1 53245472 rs9661082 A T . PASS 0.9077000 0.6729000 0.9792000 0.4284000 0.5061000 0.7149000 35.29 70.0 18 189.58 26.98 38.89 0 38.89 0/1
chr1 53250650 rs6588443 G A . PASS 0.9077000 0.6729000 0.9792000 0.4284000 0.5061000 0.7149000 36.62 70.0 107 1000.00 0.47 58.88 0 58.88 0/1
chr1 53250915 rs7523761 T C . PASS 0.5968000 0.5922000 0.6052000 0.4175000 0.4325000 0.5298000 36.76 70.0 91 1000.00 6.51 54.95 0 54.95 0/1
chr1 53308665 rs532242 C G . PASS 0.0961000 0.3256000 0.0208000 0.5726000 0.4959000 0.2865000 37.0 70.0 77 1000.00 4.95 41.56 0 41.56 0/1
chr1 53320274 rs480299 G T . PASS 0.8979000 0.4424000 0.2292000 0.6461000 0.5890000 0.5893000 37.0 70.0 80 766.85 7.50 31.25 0 31.25 0/1
chr1 53333116 rs557847 A G . PASS 0.3880000 0.3372000 0.0198000 0.5885000 0.4949000 0.3680000 37.0 70.0 10 271.59 5.00 80.00 0 80.00 0/1
chr1 53370357 rs72670819 G T . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 35.33 70.0 105 1000.00 1.37 40.95 0 40.95 0/1
chr1 53387379 rs7552139 G C . PASS 0.3018000 0.3329000 0.0198000 0.5805000 0.4847000 0.3411000 37.0 70.0 22 189.56 15.58 31.82 0 31.82 0/1
chr1 53461467 rs72670834 G A . PASS 0.0015000 0.0130000 0.0000000 0.0229000 0.0174000 0.0101840 37.0 70.0 16 211.76 5.36 43.75 0 43.75 0/1
chr1 53503622 . TA T . PASS . . . . . . 34.4 70.0 10 123.71 20.00 50.00 0 50.00 0/1
chr1 53503624 . CA C . PASS . . . . . . 34.4 70.0 10 123.71 20.00 50.00 0 50.00 0/1
chr1 53535478 rs1288386 G A . PASS 0.1241000 0.3444000 0.5536000 0.4254000 0.4100000 0.3574000 36.45 70.0 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 53537266 rs1769316 G A . PASS 0.4977000 0.6499000 0.7371000 0.4652000 0.4755000 0.5561000 36.01 70.0 85 1000.00 0.00 100.00 0 100.00 1/1
chr1 53543112 rs946590 C G . PASS 0.7988000 0.7219000 0.7788000 0.9513000 0.8957000 0.8337000 36.79 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 53544439 rs1288388 G A . PASS 0.1528000 0.4813000 0.2937000 0.7326000 0.4980000 0.4105000 35.72 69.84 122 1000.00 0.00 100.00 0 100.00 1/1
chr1 53544597 rs1288389 T C . PASS 0.3979000 0.5793000 0.3304000 0.8986000 0.6585000 0.5609000 36.75 69.58 96 1000.00 0.00 100.00 0 100.00 1/1
chr1 53553702 rs1288400 A G . PASS 0.7867000 0.9942000 1.0000000 1.0000000 1.0000000 0.9429000 36.13 70.0 138 1000.00 0.00 100.00 0 100.00 1/1
chr1 53553754 rs1288401 T C . PASS 0.1498000 0.4798000 0.2966000 0.7336000 0.4969000 0.4101000 36.66 70.0 179 1000.00 0.00 100.00 0 100.00 1/1
chr1 53558270 rs1288406 A G . PASS 0.7383000 0.9207000 0.9544000 0.8350000 0.8384000 0.8460000 36.71 70.0 123 1000.00 0.00 100.00 0 100.00 1/1
chr1 53558583 rs34983198 C CTG . PASS 0.8495000 0.9986000 1.0000000 1.0000000 1.0000000 0.9601000 36.68 70.0 18 700.79 0.00 100.00 0 100.00 1/1
chr1 53559310 rs11206091 T C . PASS 0.6755000 0.9078000 0.9563000 0.8360000 0.8507000 0.8307000 34.82 70.0 11 399.97 0.00 100.00 0 100.00 1/1
chr1 53571288 rs1288422 C G . PASS 0.8661000 0.9986000 1.0000000 1.0000000 1.0000000 0.9645000 37.0 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 53592963 rs12097556 G A . PASS 0.4410000 0.2522000 0.2758000 0.2306000 0.1616000 0.2847000 36.18 70.0 61 1000.00 6.93 72.13 0 72.13 0/1
chr1 53593017 rs1679965 T A . PASS 0.3805000 0.6268000 0.6696000 0.5944000 0.6544000 0.5693000 36.72 70.0 102 1000.00 6.98 42.16 0 42.16 0/1
chr1 53593163 rs12240252 G A . PASS 0.1309000 0.1816000 0.2063000 0.2266000 0.1125000 0.1687000 35.67 70.0 19 274.27 1.17 47.37 0 47.37 0/1
chr1 53662823 rs72673121 C A . PASS 0.0136000 0.1441000 0.0496000 0.2068000 0.0706000 0.0889000 35.13 70.0 92 1000.00 4.78 48.91 0 48.91 0/1
chr1 53676448 rs1799821 G A . PASS 0.2564000 0.3818000 0.7242000 0.5179000 0.2188000 0.4131000 37.0 69.52 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 53679229 rs1799822 A G . PASS 0.0227000 0.1542000 0.0853000 0.2068000 0.0736000 0.1004000 37.0 70.0 57 1000.00 1.10 61.40 0 61.40 0/1
chr1 53681699 rs1134688 T G . PASS 0.0227000 0.1542000 0.0813000 0.2078000 0.0736000 0.0998000 37.0 70.0 66 1000.00 9.17 56.06 0 56.06 0/1
chr1 53683908 rs72673130 G C . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 70.0 35 944.06 6.59 74.29 0 74.29 0/1
chr1 53683921 rs12140585 C G . PASS 0.0575000 0.1772000 0.4990000 0.3111000 0.1391000 0.2298000 37.0 70.0 20 112.03 10.00 25.00 0 25.00 0/1
chr1 53684525 rs436887 C G . PASS . . . . . . 36.13 70.0 69 1000.00 0.00 100.00 0 100.00 1/1
chr1 53686383 rs1679913 C G . PASS 0.9818000 0.7839000 0.9325000 0.6789000 0.5409000 0.7975000 36.5 69.17 24 950.84 0.00 100.00 0 100.00 1/1
chr1 53712727 rs5174 C T . PASS 0.0166000 0.1772000 0.0327000 0.3956000 0.1503000 0.1444000 36.69 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 53716416 rs3737983 G A . PASS 0.2466000 0.2867000 0.6984000 0.4076000 0.2229000 0.3708000 35.5 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 53723190 rs869987 G T . PASS 0.2579000 0.2867000 0.7579000 0.4036000 0.2260000 0.3856000 37.0 70.0 25 1000.00 0.00 100.00 0 100.00 1/1
chr1 53732315 rs2297660 G T . PASS 0.2042000 0.2824000 0.6319000 0.3956000 0.1820000 0.3353000 36.77 70.0 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 53736613 rs7542607 A G . PASS 0.2042000 0.2824000 0.6319000 0.3956000 0.1820000 0.3353000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 53742506 rs56300220 A G . PASS 0.2837000 0.2709000 0.6974000 0.3708000 0.2188000 0.3700000 36.45 70.0 87 1000.00 0.00 100.00 0 100.00 1/1
chr1 53755151 rs12035577 T C . PASS 0.1800000 0.2939000 0.6032000 0.4175000 0.3047000 0.3530000 36.33 70.0 18 704.37 0.00 100.00 0 100.00 1/1
chr1 53792651 rs3820198 A C . PASS 0.9327000 0.2997000 0.4841000 0.3867000 0.4479000 0.5503000 36.54 70.0 63 847.78 1.10 41.27 0 41.27 0/1
chr1 53793511 rs4926972 T C . PASS 0.9327000 0.2997000 0.4841000 0.3867000 0.4479000 0.5503000 37.0 69.39 57 1000.00 0.91 54.39 0 57.89 0/1
chr1 53974987 rs10749691 G T . PASS 0.3222000 0.6744000 0.5248000 0.8101000 0.7526000 0.5939000 36.31 69.43 55 1000.00 3.64 63.64 0 63.64 0/1
chr1 54003748 rs12739933 G A . PASS 0.4236000 0.4294000 0.4048000 0.4135000 0.3354000 0.4014000 35.93 70.0 122 1000.00 6.12 54.92 0 54.92 0/1
chr1 54060016 rs35227000 G C . PASS 0.1104000 0.1643000 0.1885000 0.2962000 0.3292000 0.2137000 35.71 70.0 62 910.30 7.14 45.16 0 45.16 0/1
chr1 54060248 rs4307514 T C . PASS 0.1074000 0.1599000 0.1885000 0.2962000 0.3425000 0.2149000 36.21 68.69 114 1000.00 6.21 53.51 0 53.51 0/1
chr1 54196929 rs808860 C T . PASS 0.3570000 0.5605000 0.4315000 0.6710000 0.6646000 0.5234000 35.43 70.0 99 1000.00 10.32 46.46 0 46.46 0/1
chr1 54258880 rs2273139 C T . PASS 0.0598000 0.0778000 0.0972000 0.1441000 0.0603000 0.0869000 37.0 70.0 36 485.73 20.00 41.67 0 41.67 0/1
chr1 54259000 rs72662316 A G . PASS 0.0000000 0.0000000 0.0000000 0.0020000 0.0000000 0.0003994 34.82 70.0 15 357.84 1.21 73.33 0 73.33 0/1
chr1 54284551 rs72662323 T C . PASS 0.0598000 0.0778000 0.0972000 0.1441000 0.0603000 0.0869000 37.0 70.0 12 182.04 0.00 50.00 0 50.00 0/1
chr1 54298297 rs72662336 T C . PASS 0.0582000 0.0591000 0.0982000 0.1352000 0.0542000 0.0811000 37.0 70.0 19 244.50 2.63 42.11 0 42.11 0/1
chr1 54331763 rs1883453 A G . PASS 0.6884000 0.3199000 0.6766000 0.4155000 0.4397000 0.5315000 34.0 70.0 10 92.51 0.00 40.00 0 40.00 0/1
chr1 54344282 rs2272928 C A . PASS 0.7610000 0.5014000 0.8502000 0.5676000 0.7035000 0.6929000 36.31 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 54354658 rs2294508 T G . PASS 0.2769000 0.2363000 0.2738000 0.1938000 0.2771000 0.2540000 37.0 70.0 14 297.17 4.76 64.29 0 64.29 0/1
chr1 54370306 rs2294512 G A . PASS 0.5038000 0.2651000 0.6270000 0.2545000 0.3558000 0.4165000 37.0 70.0 34 658.84 8.98 55.88 0 55.88 0/1
chr1 54375570 rs2235544 C A . PASS 0.1626000 0.6412000 0.4613000 0.5249000 0.6667000 0.4603000 37.0 70.0 13 300.18 3.42 69.23 0 69.23 0/1
chr1 54375701 rs11206244 C T . PASS 0.1589000 0.5173000 0.1468000 0.3678000 0.4888000 0.3125000 36.29 70.0 47 1000.00 1.13 72.34 0 72.34 0/1
chr1 54477726 rs55766128 T G . PASS 0.7292000 0.5648000 0.5942000 0.4304000 0.3333000 0.5419000 37.0 70.0 13 258.42 0.00 61.54 0 61.54 0/1
chr1 54483694 rs34764952 C T . PASS 0.0900000 0.4942000 0.5565000 0.4105000 0.2955000 0.3444000 37.0 70.0 34 575.28 11.76 50.00 0 50.00 0/1
chr1 54513132 rs41296145 T C . PASS 0.0038000 0.0187000 0.0000000 0.0408000 0.0061000 0.0129790 37.0 70.0 13 95.48 15.38 30.77 0 30.77 0/1
chr1 54561916 rs7555099 C T . PASS 0.8971000 0.5692000 0.6002000 0.3956000 0.3272000 0.5799000 37.0 70.0 10 104.51 10.00 40.00 0 40.00 0/1
chr1 54602347 rs2183302 G A . PASS 0.6377000 0.8905000 0.9851000 0.8588000 0.9468000 0.8474000 36.06 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 54605318 rs3841798,rs76608277 T TGG . PASS . . . . . . 34.69 70.0 96 1000.00 52.50 31.25 0 36.46 0/1
chr1 54605319 rs36013100,rs66537746,rs79249469 G GC . PASS 0.3631000 0.6614000 0.3889000 0.6521000 0.4254000 0.4798000 36.19 70.0 95 1000.00 27.37 60.00 0 61.05 0/1
chr1 54606804 rs3766465 C T . PASS 0.7723000 0.7939000 0.8681000 0.8509000 0.8425000 0.8241000 36.62 70.0 127 1000.00 0.80 49.61 0 49.61 0/1
chr1 54607051 rs671103 A G . PASS 0.9871000 1.0000000 1.0000000 1.0000000 1.0000000 0.9966000 36.87 70.0 95 1000.00 0.00 100.00 0 100.00 1/1
chr1 54607157 rs671539 G A . PASS 0.8374000 0.8084000 0.9742000 0.8539000 0.8998000 0.8764000 37.0 70.0 19 286.28 8.19 47.37 0 47.37 0/1
chr1 54618435 rs7528345 A T . PASS 0.4561000 0.6542000 0.6935000 0.7485000 0.7434000 0.6462000 34.5 69.17 24 902.79 0.00 100.00 0 100.00 1/1
chr1 54670658 rs36006392,rs71579999 CCTT C . PASS 0.0151000 0.1571000 0.0000000 0.2555000 0.0450000 0.0859000 35.35 70.0 38 883.59 0.81 68.42 0 68.42 0/1
chr1 54681920 rs13571 G C . PASS 0.6135000 0.6398000 0.4028000 0.7922000 0.4734000 0.5833000 36.73 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 54690954 rs3088379 T C . PASS 0.5915000 0.3977000 0.3095000 0.4453000 0.5061000 0.4619000 36.71 70.0 79 1000.00 0.43 51.90 0 51.90 0/1
chr1 54692854 rs3058961 A AGG . PASS . . . . . . 34.27 68.09 33 419.39 22.22 27.27 0 42.42 0/1
chr1 54707070 rs72664198 G T . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 36.37 70.0 38 630.63 5.26 50.00 0 50.00 0/1
chr1 54871566 . AC A . PASS . . . . . . 35.0 70.0 12 160.46 16.67 50.00 1 50.00 0/1
chr1 54871566 . ACCGC A . PASS 0.2398000 0.6787000 0.4841000 0.5656000 0.5562000 0.4770000 35.0 70.0 14 154.45 19.05 42.86 1 42.86 0/1
chr1 54871567 . CC C . PASS . . . . . . 35.0 70.0 12 160.46 16.67 50.00 1 50.00 0/1
chr1 54871709 . T TCGCCGCCGCCGC . PASS . . . . . . 36.57 69.76 31 766.58 14.96 70.97 0 70.97 0/1
chr1 55002631 rs6588519 A G . PASS 0.0219000 0.2637000 0.3244000 0.3777000 0.4622000 0.2738000 35.91 68.77 73 642.73 13.20 30.14 0 30.14 0/1
chr1 55014099 rs299874 C T . PASS 0.5287000 0.8156000 0.9157000 0.7326000 0.8558000 0.7512000 36.33 68.89 35 602.04 12.38 51.43 0 51.43 0/1
chr1 55014102 rs12133271 T C . PASS 0.0371000 0.1772000 0.1002000 0.1034000 0.1534000 0.1052000 37.0 68.75 33 536.53 10.98 48.48 0 48.48 0/1
chr1 55014160 rs299872 C T . PASS 0.2163000 0.7983000 0.7560000 0.7256000 0.8364000 0.6290000 37.0 70.0 13 220.79 0.00 53.85 0 53.85 0/1
chr1 55035269 rs300279 T C . PASS 0.5514000 0.5504000 0.4911000 0.5815000 0.6094000 0.5565000 36.71 70.0 168 1000.00 0.00 100.00 0 100.00 1/1
chr1 55035348 rs300278 G T . PASS 0.1747000 0.3271000 0.2560000 0.5080000 0.3088000 0.3053000 35.88 70.0 96 1000.00 0.00 100.00 0 100.00 1/1
chr1 55035395 rs300277 A G . PASS 0.3177000 0.4280000 0.4355000 0.5507000 0.5777000 0.4543000 36.28 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 55069986 rs746503 T C . PASS 0.4917000 0.5562000 0.4315000 0.6402000 0.4530000 0.5108000 36.82 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 55072726 rs1616691 T C . PASS 0.5106000 0.4222000 0.2460000 0.6183000 0.4018000 0.4455000 36.73 69.56 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 55074840 rs1617287 T A . PASS 0.0946000 0.3530000 0.1825000 0.5477000 0.2873000 0.2768000 36.11 70.0 72 850.45 1.85 37.50 0 37.50 0/1
chr1 55075452 rs1368883 G A . PASS 0.1959000 0.3588000 0.1815000 0.5388000 0.2873000 0.3023000 36.0 70.0 95 1000.00 7.32 50.53 0 50.53 0/1
chr1 55078046 rs1655528 T C . PASS 0.5265000 0.7089000 0.6002000 0.9215000 0.6881000 0.6775000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 55080612 rs112970628,rs71045199 G GGTGTGT . PASS . . . . . . 35.57 70.0 11 244.99 3.03 54.55 0 72.73 0/1
chr1 55085499 rs11206396 T C . PASS 0.6952000 0.5317000 0.4931000 0.4960000 0.6687000 0.5867000 36.47 70.0 68 1000.00 0.00 100.00 0 100.00 1/1
chr1 55085703 rs11583256 G T . PASS 0.0076000 0.0202000 0.0476000 0.0378000 0.0613000 0.0339000 34.82 70.0 54 671.75 3.37 40.74 0 40.74 0/1
chr1 55118566 rs1655520 C G . PASS 0.8116000 0.9914000 1.0000000 0.9980000 1.0000000 0.9487000 36.72 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 55119515 rs1655519 T G . PASS 0.4251000 0.3833000 0.4157000 0.3280000 0.5665000 0.4255000 36.69 70.0 78 1000.00 0.00 100.00 0 100.00 1/1
chr1 55119546 rs1655518 A G . PASS 0.8283000 0.9914000 1.0000000 0.9980000 1.0000000 0.9531000 36.86 70.0 83 1000.00 0.00 100.00 0 100.00 1/1
chr1 55130972 rs471724 C T . PASS 0.8880000 0.8487000 0.9226000 0.7445000 0.9131000 0.8656000 37.0 69.66 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 55134487 rs478513 G A . PASS 0.3124000 0.4784000 0.3790000 0.2783000 0.5501000 0.3884000 36.72 69.07 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 55136529 rs480963 T C . PASS 0.2670000 0.4669000 0.3720000 0.2863000 0.5706000 0.3790000 36.13 69.57 138 1000.00 0.00 100.00 0 100.00 1/1
chr1 55138673 rs564400 C T . PASS 0.2564000 0.2795000 0.2946000 0.2366000 0.4652000 0.3041000 37.0 70.0 17 674.61 0.00 100.00 0 100.00 1/1
chr1 55139741 rs570218 A G . PASS 0.9259000 0.8559000 0.9980000 0.8032000 0.9448000 0.9097000 36.01 70.0 85 1000.00 0.00 100.00 0 100.00 1/1
chr1 55152223 rs17110938 C T . PASS 0.1490000 0.2608000 0.3075000 0.1551000 0.1830000 0.2043000 37.0 70.0 14 384.86 1.30 78.57 0 78.57 0/1
chr1 55165942 rs2304310 G A . PASS 0.1649000 0.1412000 0.0784000 0.2078000 0.2321000 0.1659000 37.0 70.0 22 444.32 4.90 59.09 0 59.09 0/1
chr1 55166842 rs1065173 C T . PASS 0.2640000 0.2248000 0.1141000 0.3191000 0.3180000 0.2500000 36.35 70.0 84 1000.00 2.70 44.05 0 44.05 0/1
chr1 55167064 rs11591196 C T . PASS 0.0008000 0.0014000 0.0000000 0.0030000 0.0000000 0.0009984 35.4 70.0 31 450.01 16.13 45.16 0 48.39 0/1
chr1 55167773 rs646356 T A . PASS 0.9871000 0.9251000 0.9365000 0.8320000 0.8885000 0.9179000 36.6 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 55168084 rs644955 C T . PASS 0.7073000 0.5403000 0.7560000 0.4920000 0.6483000 0.6392000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 55182300 rs1147990 T A . PASS 0.5038000 0.6081000 0.9683000 0.5477000 0.7485000 0.6683000 37.0 69.79 58 1000.00 20.69 50.00 0 50.00 0/1
chr1 55223388 . A T . PASS . . . . . . 29.0 70.0 35 60.62 165.71 17.14 0 17.14 0/1
chr1 55224131 rs2270004 T C . PASS 0.1596000 0.1398000 0.1756000 0.1471000 0.1687000 0.1593000 37.0 70.0 62 1000.00 5.93 59.68 0 59.68 0/1
chr1 55224751 rs11577368 C A . PASS 0.0552000 0.1297000 0.1756000 0.1471000 0.1677000 0.1302000 35.7 70.0 86 1000.00 15.08 43.02 0 43.02 0/1
chr1 55247518 rs3815225 C A . PASS 0.3623000 0.2017000 0.4762000 0.0964000 0.2249000 0.2827000 37.0 70.0 11 139.13 3.64 45.45 0 45.45 0/1
chr1 55251689 rs586462 T C . PASS 0.9970000 0.9986000 1.0000000 1.0000000 1.0000000 0.9990000 36.79 69.98 117 1000.00 0.00 100.00 0 100.00 1/1
chr1 55253346 rs2269999 G A . PASS 0.3351000 0.2450000 0.4702000 0.2346000 0.3344000 0.3295000 35.5 70.0 42 807.58 14.29 57.14 0 57.14 0/1
chr1 55253575 rs665118 T C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.71 69.52 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 55253594 rs2269998 G A . PASS 0.2542000 0.1960000 0.5149000 0.1014000 0.2229000 0.2618000 34.18 70.0 35 524.24 8.40 48.57 0 48.57 0/1
chr1 55266845 rs1147984 C T . PASS 0.4985000 0.4611000 0.2788000 0.5964000 0.6575000 0.4998000 36.59 70.0 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 55271774 rs757581 A G . PASS 0.5847000 0.4741000 0.3988000 0.5964000 0.6656000 0.5501000 36.43 70.0 212 1000.00 0.00 100.00 0 100.00 1/1
chr1 55273580 rs9782980 G T . PASS 0.5023000 0.4568000 0.2708000 0.5905000 0.6605000 0.4980000 36.11 70.0 94 1000.00 0.00 100.00 0 100.00 1/1
chr1 55277430 rs10788986 T A . PASS 0.4425000 0.4323000 0.2411000 0.6083000 0.6544000 0.4752000 37.0 70.0 12 461.62 0.00 100.00 0 100.00 1/1
chr1 55277599 rs600499 T C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 37.0 69.32 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 55319902 rs718265 A G . PASS 0.6256000 0.5850000 0.4167000 0.6809000 0.8231000 0.6276000 36.77 70.0 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 55330966 rs611057 T C . PASS 0.9592000 1.0000000 1.0000000 0.9970000 1.0000000 0.9886000 36.41 69.75 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 55384052 rs34608319 G GA . PASS 0.6740000 0.9510000 0.8274000 0.9324000 0.9816000 0.8552000 36.04 68.12 25 969.16 0.00 100.00 0 100.00 1/1
chr1 55446664 rs2253467 G C . PASS 0.4107000 0.7522000 0.4891000 0.7724000 0.7311000 0.6090000 36.69 69.74 77 1000.00 0.00 100.00 0 100.00 1/1
chr1 55446671 rs2253466 C T . PASS 0.4107000 0.7522000 0.4871000 0.7724000 0.7311000 0.6086000 36.59 69.77 87 1000.00 0.00 100.00 0 100.00 1/1
chr1 55446697 rs2253465 G A . PASS 0.4100000 0.7522000 0.4861000 0.7724000 0.7321000 0.6084000 36.65 69.62 104 1000.00 0.00 100.00 0 100.00 1/1
chr1 55457710 rs2500326 G A . PASS 0.8162000 0.8876000 0.6379000 0.8002000 0.8190000 0.7875000 37.0 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 55457815 rs2495513 C T . PASS 0.8162000 0.8890000 0.6379000 0.8002000 0.8180000 0.7875000 36.16 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 55464790 rs2500341 C G . PASS 0.5030000 0.7032000 0.3284000 0.7594000 0.7485000 0.5950000 35.59 70.0 17 646.44 0.00 100.00 0 100.00 1/1
chr1 55505732 rs2495482 A G . PASS 0.8101000 0.8818000 0.9444000 0.9493000 0.9816000 0.9085000 36.81 70.0 104 1000.00 1.43 59.62 0 59.62 0/1
chr1 55518316 rs2483205 C T . PASS 0.5053000 0.3242000 0.1964000 0.4503000 0.4397000 0.3942000 36.62 70.0 94 1000.00 0.00 100.00 0 100.00 1/1
chr1 55518467 rs2495477 A G . PASS 0.7526000 0.2983000 0.2272000 0.3996000 0.5133000 0.4663000 36.89 70.0 114 1000.00 0.00 100.00 0 100.00 1/1
chr1 55518528 rs494198 C A . PASS 0.4766000 0.7695000 0.8026000 0.6451000 0.5409000 0.6292000 36.31 70.0 60 1000.00 9.05 58.33 0 58.33 0/1
chr1 55521899 rs66634270,rs67995625,rs201349983 GGGGCGGA G . PASS 0.9735000 0.9986000 1.0000000 1.0000000 1.0000000 0.9928000 36.56 69.53 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 55521913 rs45573036 A G . PASS . . . . . . 37.0 70.0 33 661.84 21.69 57.58 0 57.58 0/1
chr1 55523033 rs509504 A G . PASS 0.9319000 0.9986000 1.0000000 1.0000000 1.0000000 0.9818000 36.74 70.0 93 1000.00 0.00 100.00 0 100.00 1/1
chr1 55523984 rs584626 C T . PASS 0.7504000 0.8963000 0.9881000 0.8211000 0.9059000 0.8630000 36.23 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 55524116 rs585131 C T . PASS 0.7746000 0.8948000 0.9881000 0.8211000 0.9059000 0.8692000 36.0 70.0 24 942.98 0.00 100.00 0 100.00 1/1
chr1 55524197 rs540796 A G . PASS 0.7746000 0.8948000 0.9881000 0.8211000 0.9059000 0.8692000 36.71 69.76 82 1000.00 0.00 100.00 0 100.00 1/1
chr1 55524237 rs562556 G A . PASS 0.7746000 0.8948000 0.9881000 0.8211000 0.9049000 0.8690000 35.81 69.8 101 1000.00 0.00 100.00 0 100.00 1/1
chr1 55524339 rs368103912,rs56215417 CGTGTGTGTGTGTGT C . PASS 0.8442000 0.9236000 0.9931000 0.8787000 0.9438000 0.9115000 34.71 70.0 131 1000.00 0.18 95.42 0 100.00 1/1
chr1 55524387 rs563641 T C . PASS 0.7746000 0.8948000 0.9861000 0.8201000 0.9059000 0.8686000 35.31 70.0 78 1000.00 1.90 98.72 0 100.00 1/1
chr1 55525400 rs483462 G A . PASS 0.3676000 0.7925000 0.8730000 0.7087000 0.7648000 0.6743000 36.84 70.0 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 55527323 rs630431 G A . PASS 0.3699000 0.7939000 0.8720000 0.7068000 0.7648000 0.6745000 36.71 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 55529187 rs505151 G A . PASS 0.7118000 0.9640000 0.9603000 0.9652000 0.9744000 0.8990000 36.11 69.87 149 1000.00 0.00 100.00 0 100.00 1/1
chr1 55538385 rs654674 T C . PASS 0.8767000 0.9150000 0.9970000 0.8390000 0.9284000 0.9087000 37.0 70.0 19 758.16 0.00 100.00 0 100.00 1/1
chr1 55538552 rs10493176 T G . PASS 0.0030000 0.0418000 0.0575000 0.1133000 0.1595000 0.0721000 36.2 70.0 21 514.72 13.33 71.43 0 71.43 0/1
chr1 55541174 rs487230 A G . PASS 0.2648000 0.8473000 0.9187000 0.7714000 0.8456000 0.6923000 36.4 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 55555285 rs548852 G A . PASS 0.2617000 0.8473000 0.9196000 0.7714000 0.8436000 0.6913000 36.71 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 55557859 rs34673217 A ATT . PASS 0.8767000 0.9150000 0.9970000 0.8390000 0.9284000 0.9087000 37.0 70.0 13 465.91 0.00 100.00 0 100.00 1/1
chr1 55557864 rs3736992 C T . PASS 0.2625000 0.8473000 0.9196000 0.7714000 0.8436000 0.6915000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 55562125 rs580485 G T . PASS 0.8767000 0.9150000 0.9970000 0.8390000 0.9284000 0.9087000 35.2 70.0 20 759.74 0.00 100.00 0 100.00 1/1
chr1 55566411 rs67540253,rs2307833 TTAGTC T . PASS 0.4622000 0.8732000 0.9593000 0.8091000 0.8722000 0.7690000 34.73 70.0 11 347.65 0.00 100.00 0 100.00 1/1
chr1 55567410 rs615652 A G . PASS 0.8570000 0.9150000 0.9970000 0.8419000 0.9294000 0.9044000 36.59 70.0 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 55571729 rs56298306 A G . PASS 0.0000000 0.0000000 0.0000000 0.0020000 0.0000000 0.0003994 37.0 70.0 13 179.02 12.82 46.15 0 46.15 0/1
chr1 55572867 rs594226 G A . PASS 0.2632000 0.8473000 0.9196000 0.7704000 0.8456000 0.6919000 36.29 70.0 17 662.60 0.00 100.00 0 100.00 1/1
chr1 55638075 rs1165222 G A . PASS 0.8729000 0.9164000 0.9950000 0.8370000 0.9284000 0.9071000 35.85 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 55643837 rs11350615 TA T . PASS 0.8570000 0.9135000 0.9970000 0.8410000 0.9294000 0.9040000 36.14 70.0 22 854.88 0.00 100.00 0 100.00 1/1
chr1 55672203 . AAGG A . PASS 0.0000000 0.0000000 0.0000000 0.0070000 0.0000000 0.0013978 37.0 70.0 10 178.49 0.00 60.00 0 60.00 0/1
chr1 55672330 . T TAA . PASS . . . . . . 36.45 70.0 52 1000.00 19.23 25.00 0 76.92 0/1
chr1 55672330 rs34127046 T TA . PASS 0.4660000 0.5159000 0.5198000 0.5368000 0.5010000 0.5048000 35.86 70.0 52 1000.00 3.85 50.00 0 76.92 0/1
chr1 55939707 rs10652554,rs10652555 A AT . PASS . . . . . . 36.11 70.0 30 1000.00 4.00 83.33 0 100.00 0/1
chr1 55939760 rs1499679 C T . PASS 0.0250000 0.4885000 0.4196000 0.5179000 0.3384000 0.3289000 37.0 70.0 22 110.17 25.45 22.73 0 22.73 0/1
chr1 56291878 rs4379710 G A . PASS 0.8737000 0.8919000 0.9921000 0.8191000 0.8834000 0.8910000 35.2 70.0 20 763.89 0.00 100.00 0 100.00 1/1
chr1 56291907 rs4333889 A G . PASS 0.8744000 0.8919000 0.9911000 0.8191000 0.8834000 0.8910000 36.23 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 56614762 rs1230004 C T . PASS 0.6331000 0.4294000 0.3204000 0.3807000 0.4172000 0.4491000 36.08 70.0 41 375.13 5.25 31.71 0 31.71 0/1
chr1 56614831 rs1230003 T G . PASS 0.4349000 0.4150000 0.3204000 0.3797000 0.4172000 0.3946000 37.0 70.0 24 350.61 9.09 45.83 0 45.83 0/1
chr1 57002613 rs11583161 G A . PASS 0.3374000 0.0403000 0.1766000 0.0239000 0.0491000 0.1446000 37.0 70.0 50 819.52 15.67 48.00 0 48.00 0/1
chr1 57002627 rs1136164 C T . PASS 0.2337000 0.0159000 0.1756000 0.0119000 0.0399000 0.1094000 37.0 70.0 57 965.53 8.52 49.12 0 49.12 0/1
chr1 57085030 . C CT . PASS . . . . . . 34.75 70.0 17 641.02 17.65 23.53 0 100.00 0/1
chr1 57085030 rs3991780 C CTT . PASS 0.1929000 0.2435000 0.2312000 0.4364000 0.2362000 0.2650000 34.5 70.0 17 641.02 5.43 76.47 0 100.00 0/1
chr1 57111169 rs61772962 C G . PASS 0.3918000 0.2882000 0.1558000 0.4652000 0.2035000 0.3079000 37.0 70.0 130 1000.00 3.81 48.46 0 48.46 0/1
chr1 57158051 rs17848595 G A . PASS 0.2231000 0.0677000 0.2252000 0.0437000 0.2628000 0.1737000 36.35 70.0 83 1000.00 10.49 44.58 0 44.58 0/1
chr1 57185818 rs857141 A G . PASS 0.9811000 0.7954000 0.8254000 0.6690000 0.8344000 0.8327000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 57209695 rs1156845 T C . PASS 0.0477000 0.2421000 0.2004000 0.1243000 0.1380000 0.1384000 37.0 70.0 37 357.41 25.23 32.43 0 32.43 0/1
chr1 57219539 rs72668350 C A . PASS 0.0008000 0.0043000 0.0000000 0.0209000 0.0000000 0.0049920 37.0 70.0 45 746.88 7.27 48.89 0 48.89 0/1
chr1 57219631 rs11404547 G GA . PASS 0.9826000 0.7608000 0.9425000 0.6620000 0.7802000 0.8399000 37.0 70.0 12 70.89 33.33 33.33 0 33.33 0/1
chr1 57221552 rs71497596 TGA TTG . PASS . . . . . . 36.73 70.0 61 708.89 11.48 36.07 0 37.70 0/1
chr1 57224460 rs857103 G C . PASS 0.9818000 0.7406000 0.9345000 0.6252000 0.7771000 0.8273000 37.0 67.14 15 210.62 7.62 46.67 0 46.67 0/1
chr1 57246559 rs1738403 G A . PASS 0.3797000 0.4928000 0.4365000 0.5298000 0.4049000 0.4419000 37.0 70.0 14 217.78 14.29 50.00 0 50.00 0/1
chr1 57246662 rs1774822 C T . PASS 0.3828000 0.4928000 0.4365000 0.5308000 0.4080000 0.4435000 37.0 70.0 82 1000.00 2.77 53.66 0 53.66 0/1
chr1 57257668 rs2298129 C A . PASS 0.0575000 0.0677000 0.0893000 0.1382000 0.0818000 0.0863000 37.0 70.0 21 150.79 28.57 28.57 0 28.57 0/1
chr1 57257817 rs2298130 T C . PASS 0.3601000 0.1599000 0.3542000 0.1431000 0.1748000 0.2514000 37.0 70.0 59 917.74 1.38 45.76 0 45.76 0/1
chr1 57340727 rs652785 C A . PASS 0.1755000 0.2507000 0.4960000 0.3439000 0.4796000 0.3437000 36.72 70.0 108 1000.00 7.02 39.81 0 39.81 0/1
chr1 57340860 rs2269118 G A . PASS 0.0847000 0.3184000 0.3452000 0.2018000 0.3354000 0.2420000 37.0 70.0 21 238.48 47.62 38.10 0 38.10 0/1
chr1 57349407 rs6694643 A T . PASS 0.1241000 0.3127000 0.3393000 0.1481000 0.1892000 0.2111000 37.0 70.0 17 455.22 7.24 76.47 0 76.47 0/1
chr1 57378413 rs623077 T C . PASS 0.9244000 0.9035000 0.9296000 0.8618000 0.9724000 0.9193000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 57395251 rs605648 T C . PASS 0.7837000 0.8905000 0.9306000 0.8608000 0.9724000 0.8804000 37.0 70.0 23 925.24 0.00 100.00 0 100.00 1/1
chr1 57409329 rs72670361 A G . PASS 0.0023000 0.0288000 0.0000000 0.0547000 0.0061000 0.0167730 36.5 70.0 32 861.69 0.00 75.00 0 75.00 0/1
chr1 57422484 rs1013579 C T . PASS 0.9992000 0.9683000 1.0000000 0.9652000 0.9898000 0.9864000 36.51 70.0 97 1000.00 1.03 98.97 0 100.00 1/1
chr1 57425888 rs139781264 AG A . PASS 0.0393000 0.0793000 0.1270000 0.1680000 0.0736000 0.0950000 34.82 70.0 28 546.76 18.07 60.71 0 60.71 0/1
chr1 58090551 rs4912271 T C . PASS 0.4470000 0.4553000 0.6845000 0.5726000 0.4305000 0.5180000 37.0 70.0 22 883.47 0.00 100.00 0 100.00 1/1
chr1 58294710 rs852778 C A . PASS 0.6846000 0.6974000 0.5754000 0.5358000 0.4601000 0.5907000 36.52 70.0 33 896.30 2.91 75.76 0 75.76 0/1
chr1 58294764 rs852779 A C . PASS 0.6846000 0.6974000 0.5754000 0.5358000 0.4601000 0.5907000 35.84 70.0 73 1000.00 16.70 42.47 0 42.47 0/1
chr1 58513951 rs35112903 C A . PASS 0.2784000 0.3343000 0.1796000 0.2435000 0.1789000 0.2398000 37.0 70.0 45 370.95 3.42 28.89 0 28.89 0/1
chr1 58514090 rs17131774 A G . PASS 0.3956000 0.3501000 0.1815000 0.2455000 0.2413000 0.2859000 36.23 69.81 73 1000.00 1.98 64.38 0 64.38 0/1
chr1 58540836 rs3121907 T C . PASS 0.4312000 0.6326000 0.5069000 0.5934000 0.4949000 0.5194000 36.25 70.0 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 58946861 rs12144759 T G . PASS 0.2307000 0.1110000 0.0486000 0.1819000 0.1472000 0.1514000 37.0 70.0 14 130.09 20.00 35.71 0 35.71 0/1
chr1 58971831 rs3087585 G A . PASS 0.4546000 0.2075000 0.0526000 0.2922000 0.1871000 0.2546000 36.78 70.0 110 1000.00 9.09 49.09 0 49.09 0/1
chr1 58971940 rs11207245 C A . PASS 0.4546000 0.2061000 0.0526000 0.2922000 0.1871000 0.2544000 36.33 70.0 24 631.00 2.78 75.00 0 75.00 0/1
chr1 58999712 rs34851388 G A . PASS 0.0000000 0.0043000 0.0000000 0.0080000 0.0000000 0.0021965 36.17 70.0 53 995.33 4.68 54.72 0 54.72 0/1
chr1 59004979 rs902925 C T . PASS 0.9115000 0.9928000 1.0000000 0.9990000 1.0000000 0.9754000 36.76 69.6 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 59042181 rs14008 G T . PASS 0.3449000 0.0533000 0.1379000 0.0497000 0.1074000 0.1571000 35.4 70.0 34 463.58 18.43 44.12 0 44.12 0/1
chr1 59042388 rs1062964 C G . PASS 0.0628000 0.0187000 0.0000000 0.0408000 0.0532000 0.0377000 35.86 70.0 44 684.10 19.70 47.73 0 47.73 0/1
chr1 59042882 rs232835 T G . PASS 0.3449000 0.0533000 0.1379000 0.0497000 0.1063000 0.1569000 36.65 70.0 67 1000.00 2.02 50.75 0 50.75 0/1
chr1 59096372 rs79758152 T C . PASS 0.3502000 0.3718000 0.3988000 0.3897000 0.3732000 0.3754000 37.0 69.5 10 188.05 13.33 60.00 0 60.00 0/1
chr1 59096494 rs72676738 T C . PASS . . . . . . 36.36 69.84 95 1000.00 7.37 58.95 0 58.95 0/1
chr1 59096544 rs72922139 A G . PASS . . . . . . 36.0 69.92 86 197.91 31.01 13.95 0 13.95 0/1
chr1 59096580 . TTG TCA . PASS . . . . . . 37.0 69.92 66 279.15 27.27 18.18 0 18.18 0/1
chr1 59096598 rs72676742 C T . PASS . . . . . . 37.0 69.92 64 276.14 17.71 18.75 0 18.75 0/1
chr1 59096610 rs76970103 T A . PASS . . . . . . 34.82 69.91 70 188.15 10.13 15.71 0 15.71 0/1
chr1 59096630 rs75507867 G A . PASS . . . . . . 37.0 69.88 80 60.90 12.50 10.00 0 10.00 0/1
chr1 59096641 rs74371537 G C . PASS . . . . . . 37.0 69.83 89 196.75 4.31 13.48 0 13.48 0/1
chr1 59096652 rs78363929 C A . PASS . . . . . . 36.08 69.92 97 202.45 3.65 13.40 0 13.40 0/1
chr1 59096656 rs111864749 A G . PASS . . . . . . 37.0 69.86 93 272.40 5.38 15.05 0 15.05 0/1
chr1 59096669 rs75913621 C G . PASS . . . . . . 37.0 69.92 103 697.62 12.97 24.27 0 24.27 0/1
chr1 59096689 rs74079626 A G . PASS . . . . . . 36.7 69.75 132 1000.00 4.47 60.61 0 60.61 0/1
chr1 59096693 rs74079627 G A . PASS . . . . . . 36.22 69.96 135 1000.00 5.09 34.07 0 34.07 0/1
chr1 59096779 rs78917602 G GA . PASS 0.4992000 0.5000000 0.5000000 0.5000000 0.5000000 0.4998000 36.76 69.88 192 1000.00 5.26 49.48 0 49.48 0/1
chr1 59096853 rs78779878 C T . PASS . . . . . . 35.89 68.8 133 1000.00 13.14 40.60 0 40.60 0/1
chr1 59096927 rs111566536 C A . PASS . . . . . . 37.0 66.56 77 107.55 80.52 11.69 0 11.69 0/1
chr1 59097157 . A AGCCCGGAT . PASS 0.1354000 0.0778000 0.0556000 0.0885000 0.0808000 0.0913000 36.78 67.67 47 623.87 6.60 42.55 0 42.55 0/1
chr1 59097168 rs112794797 C T . PASS 0.1460000 0.0793000 0.0556000 0.0905000 0.0828000 0.0950000 36.48 68.13 47 774.77 6.85 48.94 0 48.94 0/1
chr1 59127024 rs4912364 T G . PASS 0.2542000 0.4020000 0.4127000 0.3857000 0.2924000 0.3405000 36.35 70.0 58 1000.00 5.68 63.79 0 63.79 0/1
chr1 59131311 rs232790 G T . PASS 0.8495000 0.9092000 0.9365000 0.8718000 0.9284000 0.8952000 35.91 70.0 30 320.54 28.48 36.67 0 36.67 0/1
chr1 59134586 rs11207284 G C . PASS . . . . . . 37.0 68.0 36 272.73 12.22 27.78 0 27.78 0/1
chr1 59134607 rs57822474 C CAG . PASS 0.9955000 0.9813000 1.0000000 0.9612000 0.9928000 0.9870000 36.56 69.51 43 1000.00 2.99 97.67 0 100.00 1/1
chr1 59139223 rs2064370 C G . PASS 0.4841000 0.6383000 0.6280000 0.5865000 0.6227000 0.5821000 36.08 70.0 27 413.12 19.37 48.15 0 48.15 0/1
chr1 59142713 rs579110 T C . PASS 0.7133000 0.6686000 0.6290000 0.5875000 0.6237000 0.6474000 36.37 70.0 40 628.76 0.79 47.50 0 47.50 0/1
chr1 59147420 rs11207292 G A . PASS 0.4849000 0.6369000 0.6290000 0.5875000 0.6217000 0.5823000 37.0 70.0 22 193.71 2.60 31.82 0 31.82 0/1
chr1 59147926 rs12139511 T C . PASS 0.6589000 0.6643000 0.6290000 0.5875000 0.6217000 0.6320000 35.62 70.0 54 854.99 15.10 48.15 0 48.15 0/1
chr1 59150941 rs2206764 G A . PASS 0.6831000 0.7450000 0.7897000 0.7217000 0.7239000 0.7288000 35.4 70.0 28 485.79 2.38 53.57 0 53.57 0/1
chr1 59158632 rs12097333 T C . PASS 0.4849000 0.6369000 0.6280000 0.5865000 0.6217000 0.5819000 37.0 70.0 18 539.90 2.22 83.33 0 83.33 0/1
chr1 59160735 rs2473746 A G . PASS 0.2186000 0.3256000 0.3720000 0.4095000 0.3783000 0.3339000 37.0 70.0 15 298.31 35.56 60.00 0 60.00 0/1
chr1 59160742 rs2064373 A C . PASS 0.2216000 0.1153000 0.0645000 0.1531000 0.0736000 0.1326000 35.8 70.0 15 323.93 33.33 66.67 0 66.67 0/1
chr1 59160885 rs2064374 A G . PASS 0.3411000 0.3357000 0.3720000 0.4125000 0.3783000 0.3682000 37.0 70.0 20 283.26 31.11 45.00 0 45.00 0/1
chr1 59165838 rs11207297 T G . PASS 0.2557000 0.4438000 0.3938000 0.3897000 0.2444000 0.3343000 34.6 70.0 10 130.12 0.00 50.00 0 50.00 0/1
chr1 59347010 rs1998762 A G . PASS 0.1997000 0.2176000 0.0685000 0.1491000 0.1892000 0.1635000 37.0 70.0 28 509.80 2.38 53.57 0 53.57 0/1
chr1 59347152 rs1998761 C T . PASS 0.1150000 0.2147000 0.0665000 0.1471000 0.1748000 0.1372000 36.24 70.0 134 1000.00 0.47 47.01 0 47.01 0/1
chr1 59630873 rs11295616 CT C . PASS 0.4070000 0.6268000 0.6577000 0.5527000 0.5910000 0.5531000 36.28 70.0 18 693.81 0.00 100.00 0 100.00 1/1
chr1 59787350 rs835409 T G . PASS 0.5477000 0.4078000 0.4782000 0.3509000 0.5092000 0.4673000 36.58 69.76 85 1000.00 0.00 100.00 0 100.00 1/1
chr1 59792497 rs835373 A C . PASS 0.6120000 0.4135000 0.4663000 0.3569000 0.5102000 0.4840000 36.65 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 59844471 rs835435 G A . PASS 0.6785000 0.4078000 0.4266000 0.3996000 0.4683000 0.4932000 36.47 70.0 91 1000.00 0.00 100.00 0 100.00 1/1
chr1 59951705 rs1188236 T G . PASS 0.6672000 0.5360000 0.3700000 0.4841000 0.4438000 0.5088000 36.36 69.64 96 1000.00 5.95 58.33 0 58.33 0/1
chr1 60228310 rs10626387 T TTC . PASS 0.7300000 0.8934000 0.9970000 0.8310000 0.8763000 0.8552000 36.54 70.0 30 427.41 1.90 46.67 0 46.67 0/1
chr1 60232151 rs629957 T C . PASS 1.0000000 1.0000000 1.0000000 0.9960000 1.0000000 0.9992000 36.49 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 60280749 rs113730234 GT G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 37.0 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 60280962 rs41287714 A G . PASS 0.4887000 0.3170000 0.1627000 0.3469000 0.1769000 0.3099000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 60466911 rs34585993,rs67112814,rs71582610 ACAG A . PASS . . . . . . 34.62 70.0 21 740.31 0.00 100.00 0 100.00 1/1
chr1 60503762 rs17560663 T C . PASS 0.0113000 0.1282000 0.0218000 0.1859000 0.0930000 0.0807000 37.0 70.0 50 903.06 3.08 52.00 0 52.00 0/1
chr1 60505578 rs680390 A G . PASS 0.9198000 0.8012000 0.7004000 0.9006000 0.9029000 0.8520000 37.0 70.0 21 841.70 0.00 100.00 0 100.00 1/1
chr1 60646192 rs7535371 C A . PASS 0.6309000 0.6470000 0.5446000 0.6720000 0.4499000 0.5887000 37.0 70.0 32 159.45 8.04 21.88 0 21.88 0/1
chr1 60942449 rs34602975 C G . PASS 0.0151000 0.2032000 0.1776000 0.2197000 0.1759000 0.1464000 36.25 70.0 27 538.43 3.70 59.26 0 59.26 0/1
chr1 60942486 rs4244166 G A . PASS 0.9070000 0.9870000 1.0000000 0.9821000 0.9642000 0.9631000 36.0 70.0 12 453.75 0.00 100.00 0 100.00 1/1
chr1 61359395 rs10493299 G A . PASS 0.3593000 0.5937000 0.6845000 0.4334000 0.5204000 0.5036000 36.04 70.0 56 819.21 5.86 44.64 0 44.64 0/1
chr1 61680057 rs333149 T C . PASS 0.5635000 0.3026000 0.5208000 0.3201000 0.3027000 0.4189000 35.46 70.0 95 1000.00 8.74 41.05 0 41.05 0/1
chr1 61743337 rs11207719 G T . PASS 0.2617000 0.0893000 0.2044000 0.0746000 0.1125000 0.1595000 37.0 70.0 29 377.34 2.30 41.38 0 41.38 0/1
chr1 61892301 rs5774558 T TG . PASS 1.0000000 1.0000000 1.0000000 1.0000000 0.9990000 0.9998000 36.48 70.0 21 814.09 0.00 100.00 0 100.00 1/1
chr1 62119978 rs10789097 C G . PASS 0.7080000 0.8818000 0.9415000 0.8678000 0.9591000 0.8602000 37.0 70.0 56 1000.00 0.00 75.00 0 75.00 0/1
chr1 62149237 rs12134205 C G . PASS 0.0212000 0.1153000 0.0218000 0.2256000 0.1840000 0.1072000 35.5 70.0 20 225.33 15.00 40.00 0 40.00 0/1
chr1 62160525 rs149200386,rs10680868 T TTA . PASS . . . . . . 37.0 70.0 14 154.42 23.81 42.86 0 42.86 0/1
chr1 62160542 rs1151765 A G . PASS 0.9539000 0.9236000 0.8472000 0.9334000 0.9755000 0.9283000 37.0 70.0 12 140.26 10.00 41.67 0 41.67 0/1
chr1 62231924 rs141761262 T TTGA . PASS 0.5371000 0.6527000 0.8710000 0.6451000 0.7474000 0.6831000 36.75 70.0 16 608.25 0.00 100.00 0 100.00 1/1
chr1 62232031 rs1286835 C T . PASS 0.6989000 0.9654000 1.0000000 0.9791000 0.9928000 0.9101000 36.66 70.0 71 1000.00 0.00 100.00 0 100.00 1/1
chr1 62232130 rs11207827 T C . PASS 0.3094000 0.1744000 0.3690000 0.2346000 0.1493000 0.2564000 36.39 70.0 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 62261168 rs7516332 A G . PASS 0.1808000 0.5634000 0.4514000 0.4930000 0.6104000 0.4349000 36.61 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 62275898 rs61770137 T C . PASS 0.4909000 0.6138000 0.4762000 0.4950000 0.6268000 0.5323000 36.83 70.0 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 62329885 rs35853578 AT A . PASS 0.5242000 0.3213000 0.1726000 0.3738000 0.5266000 0.3956000 36.49 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 62330080 rs2799627 T G . PASS 0.9660000 0.9986000 1.0000000 1.0000000 1.0000000 0.9908000 36.8 69.34 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 62330374 rs17371993 A T . PASS 0.0560000 0.0821000 0.0685000 0.1402000 0.2812000 0.1230000 37.0 70.0 10 225.67 17.14 70.00 0 70.00 0/1
chr1 62365217 rs1412622 C T . PASS 0.4713000 0.6499000 0.4147000 0.6869000 0.6268000 0.5583000 35.86 70.0 21 817.67 0.00 100.00 0 100.00 1/1
chr1 62366878 rs2499002 T G . PASS 0.7012000 0.7277000 0.9990000 0.7555000 0.8507000 0.8049000 37.0 70.0 14 545.15 0.00 100.00 0 100.00 1/1
chr1 62380270 rs1134766 C T . PASS 0.8880000 0.8357000 0.7431000 0.7247000 0.6738000 0.7770000 37.0 70.0 47 1000.00 0.40 68.09 0 68.09 0/1
chr1 62380298 rs1056513 G A . PASS 0.0862000 0.5231000 0.5655000 0.6282000 0.5624000 0.4451000 36.71 70.0 66 1000.00 2.16 63.64 0 63.64 0/1
chr1 62393394 rs2251182 A G . PASS 0.8707000 0.9193000 0.8125000 0.8499000 0.7945000 0.8466000 36.43 70.0 55 667.16 7.97 38.18 0 38.18 0/1
chr1 62456014 rs1134767 G A . PASS 0.5530000 0.3199000 0.4683000 0.4066000 0.5562000 0.4748000 37.0 70.0 62 532.79 0.36 29.03 0 29.03 0/1
chr1 62456048 rs12730210 G A . PASS 0.3828000 0.2176000 0.4454000 0.2346000 0.4070000 0.3474000 37.0 70.0 55 428.54 6.06 27.27 0 27.27 0/1
chr1 62516683 rs2498982 G C . PASS 0.7670000 0.5591000 0.2778000 0.5467000 0.6411000 0.5709000 35.63 70.0 57 1000.00 0.20 61.40 0 61.40 0/1
chr1 62545085 rs17379217 C T . PASS 0.0734000 0.2277000 0.1200000 0.3926000 0.2219000 0.1973000 37.0 70.0 17 334.06 1.18 58.82 0 58.82 0/1
chr1 62579672 rs1475564 A C . PASS 0.8056000 0.7853000 0.8958000 0.6889000 0.8354000 0.8033000 36.54 70.0 49 889.91 2.51 53.06 0 53.06 0/1
chr1 62579823 rs1475563 G A . PASS 0.4206000 0.7161000 0.7540000 0.6600000 0.5859000 0.6090000 35.97 69.43 67 1000.00 6.31 52.24 0 52.24 0/1
chr1 62594593 rs2476194 C T . PASS 0.1362000 0.4741000 0.0754000 0.5358000 0.5450000 0.3309000 35.88 70.0 80 1000.00 1.25 40.00 0 40.00 0/1
chr1 62594677 rs2481665 T C . PASS 0.0772000 0.2363000 0.0169000 0.4284000 0.2249000 0.1865000 37.0 70.0 22 319.01 7.27 45.45 0 45.45 0/1
chr1 62634700 rs2989012 A C . PASS 0.2534000 0.2205000 0.1875000 0.3211000 0.2239000 0.2434000 37.0 70.0 36 648.66 3.22 52.78 0 52.78 0/1
chr1 62634797 rs927531 C G . PASS 0.5257000 0.4971000 0.3790000 0.4761000 0.5971000 0.4962000 36.64 70.0 134 1000.00 1.49 50.00 0 50.00 0/1
chr1 62672546 rs2457829 G A . PASS 0.9879000 0.9352000 0.8522000 0.8410000 0.7679000 0.8808000 36.6 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 62673037 rs7542665 T C . PASS 0.6747000 0.6470000 0.3234000 0.6750000 0.5521000 0.5763000 36.58 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 62673225 rs7533274 G A . PASS 0.5961000 0.6239000 0.3194000 0.6491000 0.5082000 0.5377000 36.44 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 62673287 rs2457828 A C . PASS 0.0567000 0.1297000 0.0010000 0.1700000 0.0419000 0.0755000 35.91 70.0 39 740.92 7.69 56.41 0 56.41 0/1
chr1 62673365 rs17379608 T C . PASS 0.0613000 0.1758000 0.0000000 0.0795000 0.0419000 0.0647000 37.0 70.0 22 277.25 19.19 40.91 0 40.91 0/1
chr1 62675619 rs4625314 C T . PASS 0.2769000 0.3473000 0.1091000 0.4920000 0.2894000 0.2985000 36.52 70.0 49 852.29 13.88 51.02 0 51.02 0/1
chr1 62675892 rs2481694 A G . PASS 0.5166000 0.6254000 0.2510000 0.6481000 0.5317000 0.5076000 36.62 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 62676612 rs66958136 A G . PASS 0.0825000 0.3199000 0.0704000 0.2922000 0.0982000 0.1581000 36.41 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 62677048 rs1056517 G T . PASS 0.2738000 0.4986000 0.1071000 0.5477000 0.2832000 0.3283000 36.48 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 62677050 rs12137401 C T . PASS 0.0794000 0.3040000 0.0694000 0.2515000 0.0798000 0.1432000 37.0 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 62677118 rs12130050 A G . PASS 0.0817000 0.3199000 0.0694000 0.2913000 0.0982000 0.1575000 37.0 70.0 15 591.07 0.00 100.00 0 100.00 1/1
chr1 62704134 rs41289438 A G . PASS 0.3343000 0.3228000 0.1429000 0.3748000 0.2362000 0.2831000 37.0 70.0 11 185.04 3.03 54.55 0 54.55 0/1
chr1 62713224 rs2941679 C G . PASS 0.9962000 0.9914000 1.0000000 0.9672000 0.9744000 0.9862000 36.52 70.0 101 1000.00 0.00 100.00 0 100.00 1/1
chr1 62713246 rs10889315 G A . PASS 0.3026000 0.3444000 0.1429000 0.4195000 0.4008000 0.3189000 36.09 70.0 129 1000.00 1.90 51.16 0 51.16 0/1
chr1 62713469 rs10789108 T C . PASS 0.4198000 0.3905000 0.1419000 0.4493000 0.4356000 0.3688000 37.0 70.0 19 202.73 31.58 36.84 0 36.84 0/1
chr1 62728784 rs2666472 A G . PASS 0.5484000 0.7882000 0.8433000 0.7396000 0.7352000 0.7159000 36.56 69.63 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 62728838 rs2258470 T C . PASS 0.5484000 0.7896000 0.8442000 0.7396000 0.7352000 0.7163000 36.65 69.71 68 1000.00 0.00 100.00 0 100.00 1/1
chr1 62728861 rs2260581 T C . PASS 0.5492000 0.7896000 0.8433000 0.7396000 0.7352000 0.7163000 37.0 69.66 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 62728918 rs2262110 G A . PASS 0.5484000 0.7896000 0.8433000 0.7396000 0.7352000 0.7161000 36.01 70.0 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 62729015 rs2262106 G A . PASS 0.5242000 0.7882000 0.8433000 0.7396000 0.7352000 0.7095000 35.67 70.0 18 692.36 0.00 100.00 0 100.00 1/1
chr1 62732421 rs11207949 T C . PASS 0.2095000 0.3977000 0.5873000 0.2654000 0.1207000 0.3055000 37.0 70.0 44 628.73 6.70 43.18 0 43.18 0/1
chr1 62733939 rs11207950 G A . PASS 0.5885000 0.3890000 0.2520000 0.4105000 0.6370000 0.4669000 37.0 70.0 41 512.45 4.57 39.02 0 39.02 0/1
chr1 62737372 rs4609464 A C . PASS 0.4168000 0.3458000 0.2510000 0.3847000 0.5562000 0.3944000 37.0 70.0 10 225.67 20.00 70.00 0 70.00 0/1
chr1 62738904 rs7516290 T C . PASS 0.8782000 0.7911000 0.8403000 0.7018000 0.7628000 0.8005000 36.62 70.0 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 62739198 rs17855078 G A . PASS 0.1641000 0.2291000 0.1121000 0.3410000 0.4325000 0.2506000 36.09 69.7 120 1000.00 1.97 55.00 0 55.00 0/1
chr1 62740065 rs12127930 A G . PASS 0.6437000 0.3948000 0.2480000 0.4394000 0.6115000 0.4822000 36.74 70.0 104 1000.00 4.46 45.19 0 45.19 0/1
chr1 62740446 rs2666506 T C . PASS 0.8812000 0.7911000 0.8522000 0.7038000 0.7648000 0.8045000 36.85 70.0 80 1000.00 0.00 100.00 0 100.00 1/1
chr1 62740449 rs2666507 T C . PASS 0.7980000 0.7795000 0.8522000 0.7038000 0.7648000 0.7810000 36.7 70.0 80 1000.00 0.00 100.00 0 100.00 1/1
chr1 62892228 rs584998 A G . PASS 0.5953000 0.5317000 0.4405000 0.5149000 0.6493000 0.5497000 36.52 70.0 25 996.76 0.00 100.00 0 100.00 1/1
chr1 62939634 rs1168007 C T . PASS 0.8669000 0.9870000 1.0000000 1.0000000 1.0000000 0.9631000 36.79 70.0 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 62943264 rs1168008 C T . PASS 0.9349000 0.9928000 0.9683000 1.0000000 1.0000000 0.9754000 36.4 69.0 20 787.91 0.00 100.00 0 100.00 1/1
chr1 62961928 rs1168038 T C . PASS 0.9289000 0.9942000 1.0000000 1.0000000 1.0000000 0.9804000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 63001120 rs1168018 A C . PASS 0.3487000 0.6124000 0.7679000 0.6958000 0.5317000 0.5751000 36.0 70.0 24 938.83 0.00 100.00 0 100.00 1/1
chr1 63027411 rs5774610 AG A . PASS 0.9009000 0.9899000 1.0000000 0.9990000 1.0000000 0.9722000 36.03 69.39 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 63052344 rs34963039,rs56200511 CTA C . PASS 0.0522000 0.2291000 0.1538000 0.2704000 0.2055000 0.1709000 36.77 70.0 26 951.44 0.00 100.00 0 100.00 1/1
chr1 63113511 rs746735 C A . PASS 0.3472000 0.6124000 0.7669000 0.6948000 0.5337000 0.5747000 37.0 70.0 14 545.15 0.00 100.00 0 100.00 1/1
chr1 63113689 rs1168088 T C . PASS 0.9380000 0.9942000 1.0000000 1.0000000 1.0000000 0.9828000 34.6 70.0 10 358.20 0.00 100.00 0 100.00 1/1
chr1 63113719 rs1168089 T C . PASS 0.3359000 0.6124000 0.7679000 0.6948000 0.5337000 0.5719000 35.67 70.0 18 692.36 0.00 100.00 0 100.00 1/1
chr1 63153866 rs183409343 C G . PASS 0.0061000 0.1124000 0.0050000 0.0934000 0.0419000 0.0451000 37.0 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 63306232 rs6695607 T G . PASS 0.4637000 0.4986000 0.6677000 0.4443000 0.3937000 0.4920000 37.0 70.0 36 648.66 15.79 52.78 0 52.78 0/1
chr1 63605601 rs11585289 T C . PASS 0.5469000 0.5231000 0.5516000 0.5298000 0.5358000 0.5389000 37.0 70.0 81 1000.00 6.28 56.79 0 56.79 0/1
chr1 63789088 rs202186939 C T . PASS . . . . . . 36.65 70.0 59 1000.00 1.69 57.63 0 57.63 0/1
chr1 63920515 rs17319708 C G . PASS 0.0061000 0.1859000 0.0268000 0.2266000 0.0460000 0.0873000 37.0 70.0 12 303.19 5.56 75.00 0 75.00 0/1
chr1 64020987 rs72679089 A T . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 36.08 70.0 18 440.21 3.42 72.22 0 72.22 0/1
chr1 64059461 . G T . PASS 0.0000000 0.0000000 0.0010000 0.0020000 0.0000000 0.0005990 35.59 70.0 33 550.13 7.84 51.52 0 51.52 0/1
chr1 64240240 rs606550 C T . PASS 0.6861000 0.1931000 0.1875000 0.2167000 0.3548000 0.3584000 33.57 70.0 24 432.04 5.95 58.33 0 58.33 0/1
chr1 64254526 rs632076 G A . PASS 0.5439000 0.1801000 0.1875000 0.2137000 0.3446000 0.3165000 37.0 70.0 15 173.00 6.67 40.00 0 40.00 0/1
chr1 64309265 rs602934 A C . PASS 0.8487000 0.3170000 0.1419000 0.3330000 0.4325000 0.4479000 37.0 70.0 11 139.12 29.09 45.45 0 45.45 0/1
chr1 64309302 rs583102 A C . PASS 0.8487000 0.3170000 0.1419000 0.3330000 0.4325000 0.4479000 37.0 70.0 12 177.89 33.33 50.00 0 50.00 0/1
chr1 64515379 rs1772626 C T . PASS 0.5545000 0.8602000 0.9415000 0.8310000 0.8027000 0.7788000 36.68 70.0 76 1000.00 0.00 100.00 0 100.00 1/1
chr1 64603231 rs3738151 G A . PASS 0.1089000 0.1254000 0.0427000 0.1710000 0.1155000 0.1116000 37.0 70.0 13 220.80 2.20 53.85 0 53.85 0/1
chr1 64608329 rs2762833 G T . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 64616391 rs2762834 G A . PASS 0.3699000 0.4467000 0.4812000 0.3847000 0.3640000 0.4048000 35.0 66.67 23 136.91 20.29 26.09 0 26.09 0/1
chr1 64616429 rs1324359 A G . PASS 0.1377000 0.4409000 0.5119000 0.4245000 0.3845000 0.3608000 37.0 70.0 16 253.53 12.50 50.00 0 50.00 0/1
chr1 64624612 rs4362024 G A . PASS 0.8533000 0.9957000 1.0000000 1.0000000 1.0000000 0.9607000 37.0 68.18 11 424.00 0.00 100.00 0 100.00 1/1
chr1 64624842 rs6668545 A G . PASS 0.2171000 0.3588000 0.4127000 0.3966000 0.3896000 0.3458000 37.0 70.0 59 1000.00 9.00 54.24 0 54.24 0/1
chr1 64643277 rs7527017 C T . PASS 0.0416000 0.2968000 0.3115000 0.3549000 0.2924000 0.2432000 36.45 70.0 45 739.02 2.42 48.89 0 48.89 0/1
chr1 65016349 rs2164571 A T . PASS 0.7814000 0.9409000 1.0000000 0.9324000 0.9755000 0.9157000 36.78 70.0 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 65068638 rs6665437 T C . PASS 0.9561000 0.9957000 1.0000000 1.0000000 1.0000000 0.9878000 36.5 70.0 24 954.99 0.00 100.00 0 100.00 1/1
chr1 65098309 rs61731122 G A . PASS 0.0008000 0.0072000 0.0000000 0.0368000 0.0020000 0.0089856 36.54 70.0 60 860.95 16.41 43.33 0 43.33 0/1
chr1 65099978 rs2118102 G A . PASS 0.7179000 0.9755000 1.0000000 0.9970000 1.0000000 0.9215000 35.8 70.0 20 775.90 0.00 100.00 0 100.00 1/1
chr1 65113568 rs6588100 T C . PASS 0.9917000 1.0000000 1.0000000 1.0000000 1.0000000 0.9978000 36.54 70.0 105 1000.00 0.00 100.00 0 100.00 1/1
chr1 65141557 rs72673386 G A . PASS 0.0008000 0.0014000 0.0000000 0.0020000 0.0000000 0.0007987 36.57 70.0 48 980.62 7.14 58.33 0 58.33 0/1
chr1 65141676 . TTAA T . PASS . . . . . . 36.12 70.0 51 1000.00 2.04 98.04 0 98.04 1/1
chr1 65157120 rs72673394 C G . PASS 0.0000000 0.0014000 0.0000000 0.0010000 0.0000000 0.0003994 36.61 70.0 57 1000.00 4.98 54.39 0 54.39 0/1
chr1 65255018 rs2500232 G A . PASS 0.8313000 0.4841000 0.5942000 0.3429000 0.3067000 0.5349000 37.0 70.0 14 134.24 5.71 35.71 0 35.71 0/1
chr1 65270549 rs12134044 A G . PASS 0.0348000 0.1902000 0.0069000 0.1441000 0.0634000 0.0783000 35.67 70.0 25 620.13 12.00 72.00 0 72.00 0/1
chr1 65280620 rs3790529 G A . PASS 0.1278000 0.1599000 0.2788000 0.1004000 0.1176000 0.1552000 37.0 70.0 17 292.29 7.84 52.94 0 52.94 0/1
chr1 65311214 rs3737139 G C . PASS 0.0015000 0.1311000 0.0069000 0.0408000 0.0542000 0.0387000 36.33 70.0 77 1000.00 7.22 46.75 0 46.75 0/1
chr1 65321250 rs2230586 G A . PASS 0.0015000 0.1311000 0.0069000 0.0408000 0.0542000 0.0387000 36.5 70.0 98 1000.00 0.00 48.98 0 48.98 0/1
chr1 65321388 rs310229 G A . PASS 0.6309000 0.4467000 0.3065000 0.2932000 0.2740000 0.4026000 36.29 70.0 56 497.06 4.41 30.36 0 30.36 0/1
chr1 65321419 rs11579283 G A . PASS 0.0015000 0.1311000 0.0069000 0.0408000 0.0542000 0.0387000 36.0 70.0 35 351.42 18.57 34.29 0 34.29 0/1
chr1 65325970 rs310224 C T . PASS 0.6369000 0.4452000 0.3065000 0.2932000 0.2751000 0.4042000 36.08 70.0 43 900.11 2.68 60.47 0 60.47 0/1
chr1 65335095 rs11585932 T C . PASS 0.0015000 0.1297000 0.0069000 0.0408000 0.0368000 0.0351000 36.14 70.0 64 920.44 2.68 43.75 0 43.75 0/1
chr1 65684548 rs199711184 G C . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 69.67 39 723.17 6.59 53.85 0 53.85 0/1
chr1 65886398 rs3790435 T C . PASS 0.4811000 0.4697000 0.8681000 0.4453000 0.5716000 0.5679000 36.75 70.0 97 1000.00 0.00 100.00 0 100.00 1/1
chr1 65886448 rs3790434 T C . PASS 0.3888000 0.4625000 0.8681000 0.4453000 0.5716000 0.5425000 36.74 70.0 93 1000.00 0.00 100.00 0 100.00 1/1
chr1 65887013 rs12145690 A C . PASS 0.3873000 0.4611000 0.8681000 0.4443000 0.5726000 0.5419000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 66036501 rs2186248 G T . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 35.4 70.0 15 562.90 0.00 100.00 0 100.00 1/1
chr1 66058513 rs1137101 A G . PASS 0.5923000 0.4366000 0.8690000 0.4692000 0.5031000 0.5843000 37.0 70.0 57 798.45 7.46 42.11 0 42.11 0/1
chr1 66067109 rs1805134 T C . PASS 0.3820000 0.1455000 0.0675000 0.2227000 0.3824000 0.2540000 34.88 70.0 38 527.22 2.17 44.74 0 44.74 0/1
chr1 66619578 rs2503166 G A . PASS 0.6929000 0.6787000 0.4206000 0.6849000 0.4990000 0.5966000 36.68 70.0 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 66731886 rs6588193 G C . PASS 0.1407000 0.2752000 0.1637000 0.5437000 0.2904000 0.2742000 37.0 70.0 10 100.36 0.00 40.00 0 40.00 0/1
chr1 66829262 rs783039 A G . PASS 0.9349000 0.7839000 0.9454000 0.7416000 0.8926000 0.8690000 36.45 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 66831370 rs783036 G A . PASS 0.7927000 0.4467000 0.1458000 0.4920000 0.5920000 0.5150000 36.79 69.64 103 1000.00 3.29 54.37 0 54.37 0/1
chr1 66945275 rs783436 C G . PASS 0.3608000 0.6110000 0.6687000 0.6382000 0.4939000 0.5391000 37.0 70.0 11 419.85 0.00 100.00 0 100.00 1/1
chr1 66945358 rs814146 C T . PASS 0.3608000 0.6110000 0.6687000 0.6382000 0.4939000 0.5391000 36.76 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 66945463 rs4655490 T G . PASS 0.2511000 0.3991000 0.2480000 0.5030000 0.3783000 0.3464000 37.0 70.0 10 183.90 13.33 60.00 0 60.00 0/1
chr1 67098664 rs7531750 G A . PASS 0.0772000 0.0865000 0.1250000 0.1501000 0.1483000 0.1166000 37.0 70.0 18 289.28 0.00 50.00 0 50.00 0/1
chr1 67101802 rs7546825 A G . PASS 0.8026000 0.5663000 0.5030000 0.4394000 0.4816000 0.5739000 36.14 70.0 14 537.29 0.00 100.00 0 100.00 1/1
chr1 67109410 rs145373755 T TTGTG . PASS 0.1490000 0.0937000 0.1250000 0.1491000 0.1411000 0.1350000 35.5 70.0 38 207.49 25.73 23.68 0 23.68 0/1
chr1 67126114 rs12094526 A G . PASS 0.5870000 0.6556000 0.8740000 0.4105000 0.7618000 0.6530000 37.0 70.0 23 357.78 3.16 47.83 0 47.83 0/1
chr1 67136610 rs7540244 G T . PASS 0.1059000 0.0850000 0.1260000 0.1461000 0.1462000 0.1230000 37.0 70.0 20 237.35 5.00 40.00 0 40.00 0/1
chr1 67142675 rs11208943 T C . PASS 0.0877000 0.1801000 0.0893000 0.1670000 0.1125000 0.1216000 36.0 70.0 42 819.58 4.76 57.14 0 57.14 0/1
chr1 67145322 rs10889644 C A . PASS 0.6831000 0.7435000 1.0000000 0.5606000 0.9059000 0.7742000 36.43 70.0 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 67147696 rs72669494 C T . PASS 0.0008000 0.0000000 0.0000000 0.0010000 0.0010000 0.0005990 36.65 70.0 70 1000.00 14.79 48.57 0 48.57 0/1
chr1 67155862 rs71660869,rs10608231 TCTC T . PASS 0.1778000 0.2550000 0.2202000 0.3181000 0.3303000 0.2550000 36.18 70.0 22 814.12 0.00 100.00 0 100.00 1/1
chr1 67160336 rs2146904 A G . PASS 0.6286000 0.7334000 0.9960000 0.5646000 0.8160000 0.7408000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 67194911 rs3078564 TTC T . PASS 0.2436000 0.2651000 0.2302000 0.3370000 0.3364000 0.2808000 35.96 70.0 77 1000.00 0.00 100.00 0 100.00 1/1
chr1 67236097 rs1060575 A T . PASS 0.0862000 0.1023000 0.1488000 0.1511000 0.1810000 0.1326000 37.0 70.0 43 878.21 1.67 58.14 0 58.14 0/1
chr1 67242087 rs3816989 G A . PASS 0.0794000 0.1009000 0.1488000 0.1511000 0.1810000 0.1306000 35.84 70.0 68 1000.00 2.09 45.59 0 45.59 0/1
chr1 67243024 rs2133173 C A . PASS 0.2050000 0.2219000 0.1012000 0.2932000 0.1718000 0.1977000 36.29 70.0 90 1000.00 3.66 56.67 0 56.67 0/1
chr1 67266756 rs549148 T A . PASS 0.7821000 0.8919000 0.9901000 0.8300000 0.8967000 0.8712000 36.8 70.0 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 67288045 rs482082 C T . PASS 0.5537000 0.5447000 0.6419000 0.4761000 0.3497000 0.5148000 36.29 70.0 67 1000.00 4.57 50.75 0 50.75 0/1
chr1 67292473 rs34718535 A AT . PASS 0.3752000 0.4524000 0.3700000 0.5229000 0.6524000 0.4687000 36.29 70.0 78 1000.00 4.62 57.69 0 57.69 0/1
chr1 67292478 rs36067642 T A . PASS 0.3752000 0.4524000 0.3700000 0.5239000 0.6534000 0.4690000 35.47 70.0 83 1000.00 5.33 56.63 0 56.63 0/1
chr1 67303303 rs6698076 A G . PASS 0.4834000 0.3818000 0.6587000 0.3270000 0.6145000 0.4988000 36.14 70.0 25 465.06 5.71 56.00 0 56.00 0/1
chr1 67306054 rs11208966 C A . PASS 0.2292000 0.2565000 0.5466000 0.1740000 0.3855000 0.3163000 37.0 70.0 17 371.69 0.00 64.71 0 64.71 0/1
chr1 67390416 rs3008858 G C . PASS 0.8449000 0.8343000 0.8829000 0.7326000 0.8926000 0.8379000 36.61 70.0 130 1000.00 0.00 47.69 0 47.69 0/1
chr1 67390468 rs1886686 C G . PASS 0.8608000 0.8372000 0.8829000 0.7336000 0.8926000 0.8427000 37.0 70.0 87 1000.00 4.21 54.02 0 54.02 0/1
chr1 67438535 rs12131222 A T . PASS 0.1573000 0.1643000 0.1171000 0.2634000 0.1063000 0.1615000 37.0 70.0 20 404.42 20.00 60.00 0 60.00 0/1
chr1 67442210 rs11208978 C T . PASS 0.0719000 0.1225000 0.1171000 0.2078000 0.1002000 0.1208000 37.0 70.0 11 101.50 18.18 36.36 0 36.36 0/1
chr1 67442275 rs11208979 C T . PASS 0.1573000 0.1643000 0.1171000 0.2634000 0.1074000 0.1617000 36.08 70.0 32 402.21 0.96 40.62 0 40.62 0/1
chr1 67447450 rs12039172 A G . PASS 0.1392000 0.1628000 0.1171000 0.2634000 0.1084000 0.1569000 37.0 70.0 21 154.95 0.00 28.57 0 28.57 0/1
chr1 67452322 rs17497828 G A . PASS 0.1203000 0.1628000 0.1171000 0.2594000 0.1053000 0.1506000 37.0 70.0 10 146.29 0.00 50.00 0 50.00 0/1
chr1 67512861 rs2273680 G T . PASS 0.0068000 0.0692000 0.2292000 0.0229000 0.0706000 0.0759000 37.0 70.0 17 246.37 11.76 47.06 0 47.06 0/1
chr1 67512903 rs1024229 G T . PASS 0.7746000 0.6873000 0.6389000 0.6412000 0.7802000 0.7095000 37.0 70.0 46 660.33 11.30 43.48 0 43.48 0/1
chr1 67512920 rs1024230 A C . PASS 0.7746000 0.6873000 0.6389000 0.6412000 0.7802000 0.7095000 36.57 70.0 56 952.38 10.71 50.00 0 50.00 0/1
chr1 67558739 rs6588237 C T . PASS 0.9228000 0.9107000 0.9722000 0.8141000 0.9816000 0.9207000 37.0 70.0 48 658.47 7.50 41.67 0 41.67 0/1
chr1 67560897 rs10889653 A G . PASS 0.9644000 0.9150000 0.9722000 0.8141000 0.9816000 0.9323000 37.0 70.0 21 154.95 23.81 28.57 0 28.57 0/1
chr1 67560956 rs11208997 C T . PASS 0.9879000 0.9150000 0.9722000 0.8141000 0.9816000 0.9385000 37.0 70.0 54 473.32 6.02 29.63 0 29.63 0/1
chr1 67577367 rs6588240 A T . PASS 0.6641000 0.8256000 0.9077000 0.7624000 0.9202000 0.8053000 35.8 70.0 14 326.93 2.86 71.43 0 71.43 0/1
chr1 67591347 rs6691094 A G . PASS 0.2859000 0.6614000 0.7907000 0.6412000 0.8027000 0.6118000 34.0 70.0 14 80.47 14.29 28.57 0 28.57 0/1
chr1 67633812 rs1884444 G T . PASS 0.4713000 0.3689000 0.6369000 0.5239000 0.6207000 0.5302000 36.46 70.0 89 1000.00 0.00 100.00 0 100.00 1/1
chr1 67633963 rs11465770 C T . PASS 0.0030000 0.0504000 0.0010000 0.0954000 0.0716000 0.0411000 36.14 70.0 23 471.08 11.80 60.87 0 60.87 0/1
chr1 67648460 rs6687620 T C . PASS 0.9955000 0.9280000 0.9960000 0.8489000 0.9714000 0.9521000 37.0 70.0 24 967.01 0.00 100.00 0 100.00 1/1
chr1 67685387 rs7530511 T C . PASS 0.7632000 0.8501000 0.9871000 0.8569000 0.9519000 0.8760000 35.95 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 67685443 rs7518660 G A . PASS 0.5061000 0.5476000 0.2530000 0.4563000 0.3027000 0.4111000 37.0 70.0 31 375.47 28.49 38.71 0 38.71 0/1
chr1 67706036 . C T . PASS . . . . . . 37.0 70.0 27 53.35 40.74 14.81 0 14.81 0/1
chr1 67795319 rs1495963 T C . PASS 0.7171000 0.9035000 0.8056000 0.9771000 0.9080000 0.8502000 35.5 70.0 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 68032115 rs10789238 G A . PASS 0.3570000 0.5058000 0.5347000 0.5487000 0.4571000 0.4714000 35.0 70.0 12 441.74 0.00 100.00 0 100.00 1/1
chr1 68151980 rs2759219 T G . PASS 0.6778000 0.8069000 0.6121000 0.8469000 0.8395000 0.7480000 37.0 70.0 16 628.69 0.00 100.00 0 100.00 1/1
chr1 68152363 rs3783468 G A . PASS 0.1483000 0.4971000 0.4425000 0.5288000 0.5992000 0.4203000 37.0 70.0 17 292.29 20.92 52.94 0 52.94 0/1
chr1 68173264 rs2295942 C T . PASS 0.1611000 0.4885000 0.4216000 0.5129000 0.5920000 0.4137000 37.0 70.0 35 572.29 2.69 48.57 0 48.57 0/1
chr1 68299291 rs11209163 T G . PASS 0.5189000 0.6628000 0.6190000 0.6352000 0.5624000 0.5909000 36.39 69.83 118 1000.00 0.00 100.00 0 100.00 1/1
chr1 68299331 rs12136827 C T . PASS 0.0961000 0.2968000 0.2242000 0.3201000 0.3630000 0.2468000 35.96 69.78 92 1000.00 0.00 100.00 0 100.00 1/1
chr1 68598726 rs60606556 A AGGCAGC . PASS 0.7005000 0.9323000 0.9187000 0.9304000 0.9335000 0.8682000 36.27 68.18 13 469.93 0.00 100.00 0 100.00 1/1
chr1 68603432 rs1430754 C T . PASS 0.0227000 0.1931000 0.0000000 0.1809000 0.1288000 0.0942000 36.2 70.0 25 506.83 16.00 60.00 0 60.00 0/1
chr1 68603586 rs983034 C T . PASS 0.1067000 0.3372000 0.1419000 0.3519000 0.3200000 0.2366000 37.0 70.0 63 780.39 7.14 38.10 0 38.10 0/1
chr1 68620762 rs3762371 G A . PASS 0.1717000 0.3660000 0.1567000 0.3817000 0.2986000 0.2626000 35.36 70.0 43 721.03 7.19 51.16 0 51.16 0/1
chr1 68624878 rs3748705 C T . PASS 0.2368000 0.4524000 0.4127000 0.3648000 0.3487000 0.3496000 35.59 69.41 69 1000.00 1.62 49.28 0 49.28 0/1
chr1 68627568 rs74081400 C A . PASS 0.2345000 0.4539000 0.3998000 0.3708000 0.3569000 0.3494000 37.0 69.31 87 1000.00 4.95 44.83 0 44.83 0/1
chr1 68627692 rs12029634 G T . PASS 0.3533000 0.8141000 0.5585000 0.7535000 0.6524000 0.5972000 36.55 68.89 106 1000.00 0.00 100.00 0 100.00 1/1
chr1 68627939 rs79835885 T C . PASS . . . . . . 37.0 61.11 76 114.71 26.61 11.84 0 11.84 0/1
chr1 68627964 rs76873961 G C . PASS . . . . . . 37.0 61.88 88 701.00 0.00 27.27 0 27.27 0/1
chr1 68628028 rs79146259 G C . PASS . . . . . . 36.64 63.45 113 989.68 18.56 29.20 0 29.20 0/1
chr1 68628032 rs79587317 T A . PASS . . . . . . 37.0 65.21 119 607.71 14.15 20.17 0 20.17 0/1
chr1 68628044 rs76648533 T C . PASS . . . . . . 37.0 63.28 128 918.92 17.19 25.00 0 25.00 0/1
chr1 68628060 rs79330178 C T . PASS . . . . . . 37.0 65.21 132 572.72 16.67 18.18 0 18.18 0/1
chr1 68628201 rs1808599 C T . PASS 0.4092000 0.8199000 0.5585000 0.7535000 0.6616000 0.6146000 36.71 70.0 84 1000.00 0.00 100.00 0 100.00 1/1
chr1 68634030 rs1367447 C T . PASS 0.1067000 0.1311000 0.2669000 0.2117000 0.2485000 0.1911000 37.0 70.0 38 855.64 3.95 63.16 0 63.16 0/1
chr1 68896644 rs932783 G A . PASS 0.6210000 0.4481000 0.7450000 0.3499000 0.5982000 0.5631000 35.67 70.0 16 283.29 9.72 56.25 0 56.25 0/1
chr1 68900857 rs11269074,rs71692096 GCTCTTGTTTCTTTTTCTGGCTT G . PASS 0.6354000 0.4971000 0.5972000 0.3350000 0.4796000 0.5178000 36.58 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 68905358 rs1925955 G C . PASS 0.8570000 0.6715000 0.8641000 0.3917000 0.6227000 0.6935000 36.04 69.2 25 980.60 0.00 100.00 0 100.00 1/1
chr1 68944792 rs3762282 C G . PASS 0.1460000 0.0447000 0.0714000 0.0517000 0.0399000 0.0773000 37.0 70.0 11 55.58 72.73 27.27 0 27.27 0/1
chr1 68947318 rs3833522 C CA . PASS 0.7761000 0.6009000 0.3115000 0.8181000 0.5450000 0.6216000 37.0 70.0 24 951.42 0.00 100.00 0 100.00 1/1
chr1 68948280 rs3790479 A C . PASS 0.1460000 0.0447000 0.0714000 0.0517000 0.0399000 0.0773000 36.6 69.27 64 1000.00 9.79 46.88 0 46.88 0/1
chr1 68952564 . AA A . PASS . . . . . . 35.37 70.0 48 1000.00 0.00 79.17 1 79.17 0/1
chr1 68952564 . AACACACAC A . PASS . . . . . . 34.73 70.0 47 244.94 43.33 23.40 1 78.72 0/1
chr1 68952564 . AACACACAC AAC . PASS . . . . . . . . 47 244.94 11.22 46.81 1 78.72 0/1
chr1 68952565 . AC A . PASS . . . . . . 35.37 70.0 49 1000.00 2.04 77.55 1 77.55 0/1
chr1 68960349 rs78030459 T C . PASS 0.1445000 0.0447000 0.0694000 0.0497000 0.0399000 0.0761000 37.0 69.28 38 1000.00 3.09 76.32 0 76.32 0/1
chr1 68960404 rs72674357 A T . PASS 0.0061000 0.0317000 0.0714000 0.0517000 0.0399000 0.0385000 36.33 70.0 21 640.03 1.59 85.71 0 85.71 0/1
chr1 68960411 rs72674358 T G . PASS 0.0061000 0.0317000 0.0714000 0.0517000 0.0399000 0.0385000 35.29 70.0 16 476.00 5.36 87.50 0 87.50 0/1
chr1 69614582 rs11209397 A G . PASS 0.3018000 0.6657000 0.4940000 0.5984000 0.5378000 0.4966000 36.53 69.61 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 70226125 rs12407496 T C . PASS 0.2141000 0.1888000 0.1419000 0.1680000 0.1452000 0.1733000 37.0 70.0 15 173.00 33.33 40.00 0 40.00 0/1
chr1 70297028 rs72675088 A G . PASS 0.0008000 0.0014000 0.0000000 0.0020000 0.0000000 0.0007987 36.2 70.0 27 500.81 5.93 55.56 0 55.56 0/1
chr1 70297051 rs12734666 A G . PASS 0.5182000 0.5317000 0.6835000 0.5775000 0.4816000 0.5581000 36.61 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 70385301 rs11802766 C T . PASS 0.1800000 0.0231000 0.0000000 0.0229000 0.0153000 0.0583000 37.0 70.0 30 420.24 18.97 43.33 0 43.33 0/1
chr1 70397087 rs7530457 T C . PASS 0.5522000 0.5216000 0.6776000 0.5626000 0.4918000 0.5635000 37.0 70.0 10 188.05 0.00 60.00 0 60.00 0/1
chr1 70460304 rs72676879 A G . PASS 0.0182000 0.0058000 0.0000000 0.0070000 0.0000000 0.0069888 34.18 70.0 46 491.13 7.16 36.96 0 36.96 0/1
chr1 70493773 rs72676881 A G . PASS 0.0000000 0.0014000 0.0000000 0.0020000 0.0000000 0.0005990 35.5 70.0 14 247.54 10.71 57.14 0 57.14 0/1
chr1 70587360 rs641909 C T . PASS 0.8366000 0.7277000 0.6280000 0.7137000 0.7362000 0.7352000 33.4 70.0 10 346.19 0.00 100.00 0 100.00 1/1
chr1 70596535 rs6424382 C T . PASS 0.5764000 0.6326000 0.5308000 0.6223000 0.5072000 0.5707000 36.81 70.0 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 70646748 rs72678609 T C . PASS 0.0000000 0.0072000 0.0000000 0.0189000 0.0092000 0.0065895 36.33 70.0 26 629.13 8.55 69.23 0 69.23 0/1
chr1 70728626 . T TAAAA . PASS . . . . . . 35.5 70.0 13 121.67 46.15 23.08 0 38.46 0/1
chr1 70883840 rs1145920 A G . PASS 0.7837000 0.8833000 0.8294000 0.7197000 0.8088000 0.7987000 36.14 70.0 14 537.29 0.00 100.00 0 100.00 1/1
chr1 70896165 rs17131305 G A . PASS 0.0696000 0.2032000 0.2976000 0.0765000 0.1902000 0.1589000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 70904523 rs112004441 T TTGTG . PASS 0.3177000 0.4467000 0.4097000 0.3509000 0.3763000 0.3722000 36.29 70.0 70 1000.00 1.43 80.00 0 97.14 0/1
chr1 70942350 rs12129044 A C . PASS 0.3343000 0.5893000 0.6409000 0.5686000 0.5460000 0.5198000 36.7 70.0 80 1000.00 0.00 100.00 0 100.00 1/1
chr1 70997152 rs505292 T C . PASS 0.8238000 0.7709000 0.9206000 0.9573000 0.9560000 0.8886000 36.4 69.9 20 787.91 0.00 100.00 0 100.00 1/1
chr1 71256507 rs2260497 G C . PASS 0.4418000 0.4669000 0.6141000 0.5139000 0.6145000 0.5282000 36.08 70.0 73 805.66 0.84 35.62 0 35.62 0/1
chr1 71419499 rs571705 C T . PASS 0.8101000 0.8977000 0.9544000 0.8569000 0.8466000 0.8678000 36.2 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 71477315 rs5680 A T . PASS 0.6006000 0.5692000 0.6736000 0.3857000 0.3436000 0.5176000 37.0 70.0 19 754.01 0.00 100.00 0 100.00 1/1
chr1 71537943 rs11209745 A G . PASS 0.1483000 0.4366000 0.7133000 0.2584000 0.3476000 0.3630000 35.5 70.0 29 524.55 3.45 55.17 0 55.17 0/1
chr1 71544079 rs10574763 CAAG C . PASS 0.0113000 0.2911000 0.2887000 0.1620000 0.2239000 0.1777000 36.5 70.0 16 324.52 4.17 75.00 0 75.00 0/1
chr1 72058405 rs1334005 T C . PASS 0.6634000 0.9280000 0.8482000 0.9960000 0.8978000 0.8498000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 72058552 rs1413368 G A . PASS 0.6634000 0.9280000 0.8472000 0.9960000 0.8978000 0.8496000 36.67 70.0 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 72242039 rs6424448 G A . PASS 0.4115000 0.8415000 0.8790000 0.8757000 0.8722000 0.7484000 35.5 70.0 16 241.52 0.00 50.00 0 50.00 0/1
chr1 72293633 rs495411 G A . PASS 0.5424000 0.3012000 0.6637000 0.3360000 0.4489000 0.4736000 37.0 70.0 23 107.16 15.65 21.74 0 21.74 0/1
chr1 72740634 rs7549792 G A . PASS 0.5371000 0.3775000 0.1369000 0.4821000 0.3998000 0.3966000 36.64 69.7 55 1000.00 2.42 60.00 0 60.00 0/1
chr1 72740734 rs9326098 C G . PASS 0.0287000 0.2594000 0.1230000 0.3012000 0.3446000 0.1961000 37.0 69.85 28 422.11 18.13 46.43 0 46.43 0/1
chr1 74575182 rs1340472 C T . PASS 0.5053000 0.8876000 0.9573000 0.9085000 0.8875000 0.8049000 36.27 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 74663814 rs1412825 C G . PASS 0.1528000 0.3890000 0.7391000 0.4652000 0.5521000 0.4443000 35.0 70.0 17 389.44 2.94 70.59 0 70.59 0/1
chr1 74665493 rs792310 G A . PASS 0.1619000 0.3890000 0.7391000 0.4642000 0.5532000 0.4467000 36.56 69.26 55 917.77 20.61 49.09 0 49.09 0/1
chr1 74670172 rs12046751 A G . PASS 0.1362000 0.4280000 0.1171000 0.4085000 0.1840000 0.2368000 36.29 70.0 53 506.10 19.53 32.08 0 32.08 0/1
chr1 74671074 rs55882158 C T . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0010000 0.0003994 36.74 70.0 87 1000.00 7.53 54.02 0 54.02 0/1
chr1 74671519 rs571848 A G . PASS 0.1528000 0.3890000 0.7391000 0.4652000 0.5532000 0.4445000 36.61 70.0 51 1000.00 4.93 60.78 0 60.78 0/1
chr1 74819077 rs6424586 T G . PASS 0.8661000 0.9380000 1.0000000 0.9483000 0.9663000 0.9391000 36.29 69.41 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 75006027 rs3895907 A G . PASS 0.1936000 0.3847000 0.1468000 0.5487000 0.4110000 0.3245000 37.0 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 75006076 rs3845348 G A . PASS 0.8737000 0.9597000 0.8938000 0.9642000 0.9172000 0.9163000 35.5 70.0 16 608.82 0.00 100.00 0 100.00 1/1
chr1 75036783 rs9326115 T C . PASS 0.9070000 0.9971000 1.0000000 1.0000000 1.0000000 0.9750000 36.4 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 75036812 rs9326116 C T . PASS 0.9070000 0.9957000 1.0000000 1.0000000 1.0000000 0.9748000 36.13 69.64 55 1000.00 0.00 100.00 0 100.00 1/1
chr1 75037845 rs12723334 A G . PASS 0.2466000 0.3314000 0.5843000 0.3549000 0.3855000 0.3752000 37.0 70.0 84 1000.00 2.38 42.86 0 42.86 0/1
chr1 75038228 rs11580409 A C . PASS 0.2466000 0.3300000 0.5794000 0.3579000 0.3916000 0.3758000 36.0 70.0 43 812.42 1.36 55.81 0 55.81 0/1
chr1 75072264 rs41289216 G T . PASS 0.2330000 0.4524000 0.1141000 0.5010000 0.3507000 0.3163000 36.25 70.0 30 529.40 22.50 53.33 0 53.33 0/1
chr1 75097426 rs11210490 G C . PASS 0.2284000 0.4741000 0.1141000 0.5268000 0.3384000 0.3209000 36.56 70.0 52 922.65 3.70 51.92 0 51.92 0/1
chr1 75108863 rs623171 A C . PASS 0.8843000 0.7061000 0.3919000 0.6839000 0.6503000 0.6745000 37.0 70.0 12 94.34 50.00 33.33 0 33.33 0/1
chr1 75172652 rs17552114 T C . PASS 0.0015000 0.0303000 0.0000000 0.0417000 0.0082000 0.0145770 36.39 70.0 95 1000.00 4.39 62.11 0 62.11 0/1
chr1 75190452 rs1051122 C T . PASS 0.8306000 0.7954000 0.7728000 0.7455000 0.7106000 0.7736000 36.4 70.0 58 616.36 4.14 34.48 0 34.48 0/1
chr1 75199152 rs277373 C T . PASS 0.9856000 0.9986000 1.0000000 1.0000000 1.0000000 0.9960000 36.23 68.71 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 75214390 rs749690 G C . PASS 0.0756000 0.4222000 0.0079000 0.5437000 0.1922000 0.2268000 37.0 70.0 28 422.11 6.59 46.43 0 46.43 0/1
chr1 75609049 rs12041465 A C . PASS 0.0968000 0.3343000 0.7956000 0.1710000 0.2873000 0.3225000 37.0 70.0 18 670.47 2.61 94.44 0 100.00 1/1
chr1 75672376 rs1948874 A G . PASS 0.1770000 0.4669000 0.8323000 0.3966000 0.4202000 0.4407000 37.0 70.0 64 1000.00 2.27 51.56 0 51.56 0/1
chr1 75680433 rs687715 G A . PASS 0.5068000 0.3012000 0.1548000 0.3728000 0.3865000 0.3570000 36.25 70.0 30 533.55 16.67 53.33 0 53.33 0/1
chr1 75681511 rs595009 T C . PASS 0.8767000 0.8862000 0.9960000 0.8300000 0.8967000 0.8966000 36.29 70.0 68 1000.00 0.00 100.00 0 100.00 1/1
chr1 75684102 rs72682021 T A . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 70.0 13 300.18 8.55 69.23 0 69.23 0/1
chr1 75685403 rs600734 T C . PASS 0.6551000 0.3098000 0.1548000 0.3757000 0.3947000 0.3996000 37.0 70.0 14 259.55 7.14 57.14 0 57.14 0/1
chr1 75716925 rs588098 C T . PASS 0.5424000 0.7637000 0.9494000 0.7316000 0.8067000 0.7446000 36.26 70.0 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 75766186 rs623850 G A . PASS 0.7171000 0.6671000 0.8363000 0.5865000 0.5399000 0.6733000 37.0 70.0 14 176.01 4.76 42.86 0 42.86 0/1
chr1 76047910 rs1831701 G A . PASS 0.2171000 0.3242000 0.8938000 0.3708000 0.4857000 0.4515000 37.0 66.62 29 423.25 4.24 44.83 0 44.83 0/1
chr1 76048072 rs1831702 A C . PASS 0.4274000 0.3386000 0.8938000 0.3718000 0.4867000 0.5094000 36.0 70.0 22 386.39 1.52 54.55 0 54.55 0/1
chr1 76107339 rs211716 A G . PASS 0.6309000 0.4870000 0.9504000 0.3797000 0.5869000 0.6162000 35.5 70.0 26 533.58 15.38 61.54 0 61.54 0/1
chr1 76107473 rs211715 C G . PASS 0.6309000 0.4870000 0.9504000 0.3797000 0.5869000 0.6162000 37.0 70.0 38 475.56 1.40 39.47 0 39.47 0/1
chr1 76190569 rs1251075 C G . PASS 0.5998000 0.3602000 0.0228000 0.3250000 0.2076000 0.3187000 37.0 70.0 56 1000.00 7.98 60.71 0 60.71 0/1
chr1 76194054 rs7524467 C G . PASS 0.1362000 0.2997000 0.0228000 0.3052000 0.2025000 0.1829000 36.14 70.0 28 451.88 7.14 50.00 0 50.00 0/1
chr1 76194229 rs11316888 GT G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 35.53 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 76198436 rs2275378 T C . PASS 0.2874000 0.3256000 0.0228000 0.3241000 0.2076000 0.2312000 35.67 70.0 67 857.64 6.63 40.30 0 40.30 0/1
chr1 76198785 rs3818855 G A . PASS 0.2874000 0.3256000 0.0228000 0.3231000 0.2076000 0.2310000 36.03 70.0 72 1000.00 7.96 51.39 0 51.39 0/1
chr1 76199345 rs2153126 C G . PASS 0.2874000 0.3256000 0.0228000 0.3231000 0.2076000 0.2310000 34.88 70.0 27 556.18 2.18 62.96 0 62.96 0/1
chr1 76205643 rs12127402 C A . PASS 0.1619000 0.3026000 0.0228000 0.3052000 0.2025000 0.1901000 37.0 70.0 25 431.15 3.08 52.00 0 52.00 0/1
chr1 76209754 rs12123977 G A . PASS 0.1362000 0.3026000 0.0228000 0.3052000 0.2025000 0.1833000 36.53 70.0 84 1000.00 13.17 60.71 0 60.71 0/1
chr1 76209792 rs1146579 T C . PASS 0.5953000 0.3617000 0.0228000 0.3241000 0.2076000 0.3175000 36.71 70.0 69 1000.00 18.84 60.87 0 60.87 0/1
chr1 76209935 rs1146580 T C . PASS 0.5991000 0.3617000 0.0228000 0.3241000 0.2076000 0.3185000 37.0 69.82 69 929.42 0.10 40.58 0 40.58 0/1
chr1 76210289 rs11161510 C T . PASS 0.1377000 0.2522000 0.0238000 0.3012000 0.1973000 0.1751000 37.0 70.0 58 753.67 6.30 39.66 0 39.66 0/1
chr1 76227022 rs1061337 A G . PASS 0.1362000 0.2522000 0.0228000 0.3002000 0.1973000 0.1743000 36.67 70.0 71 1000.00 9.78 50.70 0 50.70 0/1
chr1 76252011 rs1146634 G A . PASS 0.7920000 0.5303000 0.0397000 0.6113000 0.4080000 0.4930000 36.56 70.0 55 917.77 2.02 49.09 0 49.09 0/1
chr1 76257892 rs12703 A T . PASS 0.9939000 0.8055000 0.7371000 0.9374000 0.9550000 0.8972000 36.58 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 76259677 rs141490560,rs372421559 ACCTAAGAGTGAGACTTAACCCACTTTTAAATTGTTCT A . PASS 0.1604000 0.2781000 0.0169000 0.2843000 0.2076000 0.1819000 37.0 70.0 16 482.55 8.93 87.50 0 87.50 0/1
chr1 76269372 rs5745323 T C . PASS 0.4569000 0.4280000 0.0397000 0.5875000 0.3967000 0.3834000 35.91 70.0 14 372.85 11.69 78.57 0 78.57 0/1
chr1 76272837 rs3737574 A G . PASS 0.0265000 0.2248000 0.6895000 0.2714000 0.5061000 0.3303000 37.0 70.0 57 965.53 5.14 49.12 0 49.12 0/1
chr1 76276353 rs12122939 T C . PASS 0.1543000 0.2248000 0.0169000 0.2783000 0.2014000 0.1705000 35.5 70.0 19 232.50 7.89 42.11 0 42.11 0/1
chr1 76333163 rs5745433 T G . PASS 0.1536000 0.2161000 0.0169000 0.2604000 0.2014000 0.1655000 35.4 70.0 20 505.72 0.00 75.00 0 75.00 0/1
chr1 76333352 rs5745437 G A . PASS 0.0038000 0.0231000 0.0010000 0.0646000 0.0235000 0.0220000 36.25 70.0 24 551.61 4.17 66.67 0 66.67 0/1
chr1 76344011 rs1493367 C A . PASS 0.6846000 0.7781000 0.9851000 0.7515000 0.7935000 0.7927000 37.0 70.0 22 879.32 0.00 100.00 0 100.00 1/1
chr1 76344705 rs5745448 T C . PASS 0.0242000 0.2349000 0.6964000 0.3022000 0.5000000 0.3375000 36.61 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 76344711 rs5745449 A T . PASS 0.6846000 0.7781000 0.9851000 0.7515000 0.7935000 0.7927000 36.2 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 76345884 rs2307078 T A . PASS 0.0242000 0.2349000 0.6964000 0.3022000 0.5000000 0.3375000 35.96 70.0 23 897.06 0.00 100.00 0 100.00 1/1
chr1 76346920 rs5745466 C CAT . PASS 0.8411000 0.9914000 1.0000000 0.9990000 1.0000000 0.9567000 35.75 70.0 22 849.87 0.00 100.00 0 100.00 1/1
chr1 76378361 rs5020911 T A . PASS 0.1490000 0.3199000 0.6935000 0.3529000 0.5020000 0.3922000 34.67 70.0 18 577.01 8.89 83.33 0 100.00 0/1
chr1 76378363 rs28693610 T A . PASS 0.0401000 0.2262000 0.5724000 0.2972000 0.4581000 0.3063000 35.29 70.0 19 147.82 15.79 31.58 0 36.84 0/1
chr1 76387748 rs12567390 T A . PASS 0.0121000 0.2579000 0.7054000 0.3032000 0.4857000 0.3367000 36.23 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 76397972 rs3795251 C T . PASS 0.1884000 0.2983000 0.7073000 0.3221000 0.5041000 0.3966000 36.79 69.65 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 76745338 rs6675148 G A . PASS 0.6853000 0.6095000 0.3522000 0.6034000 0.4888000 0.5529000 35.25 70.0 114 1000.00 0.22 42.11 0 42.11 0/1
chr1 76779444 rs17626151 G A . PASS 0.0008000 0.0216000 0.0010000 0.0328000 0.0041000 0.0107830 37.0 70.0 14 176.01 4.76 42.86 0 42.86 0/1
chr1 76784636 rs2392030 T C . PASS 0.4440000 0.6542000 0.5903000 0.5189000 0.6759000 0.5629000 37.0 70.0 101 1000.00 0.39 40.59 0 40.59 0/1
chr1 76878156 rs17098942 C T . PASS 0.0658000 0.1499000 0.3988000 0.2346000 0.4427000 0.2520000 36.29 70.0 17 662.60 0.00 100.00 0 100.00 1/1
chr1 77093180 rs1184626 C A . PASS 0.6407000 0.5173000 0.2421000 0.3966000 0.3773000 0.4429000 37.0 69.38 67 1000.00 14.55 47.76 0 47.76 0/1
chr1 77165502 rs2764657 G T . PASS 0.9607000 0.9597000 0.8631000 0.9095000 0.7935000 0.8980000 35.0 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 77165835 rs2619599 G C . PASS 0.9607000 0.9582000 0.8661000 0.9076000 0.7935000 0.8980000 36.17 69.43 87 1000.00 0.00 100.00 0 100.00 1/1
chr1 77166140 rs61784815 A G . PASS 0.0038000 0.2608000 0.0159000 0.1322000 0.1115000 0.0887000 37.0 69.88 67 1000.00 7.51 49.25 0 49.25 0/1
chr1 77397287 rs3113983 T C . PASS 0.6611000 0.4625000 0.4306000 0.5905000 0.6196000 0.5649000 36.28 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 77627096 rs839825 G A . PASS 0.9584000 0.9971000 1.0000000 1.0000000 1.0000000 0.9886000 37.0 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 77627450 rs17099983 T C . PASS 0.0091000 0.0231000 0.1558000 0.0388000 0.2566000 0.0948000 35.29 70.0 14 205.77 0.00 50.00 0 50.00 0/1
chr1 77629444 rs2293253 T C . PASS 0.0091000 0.0231000 0.1558000 0.0388000 0.2566000 0.0948000 34.33 70.0 21 256.24 6.35 42.86 0 42.86 0/1
chr1 77632270 rs1721144 T C . PASS 0.9508000 0.9971000 1.0000000 1.0000000 1.0000000 0.9866000 37.0 68.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 77634948 rs1779199 G A . PASS 0.9508000 0.9971000 1.0000000 1.0000000 1.0000000 0.9866000 37.0 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 77759578 rs2815311 A G . PASS 0.0613000 0.1023000 0.1359000 0.2038000 0.0838000 0.1150000 36.67 70.0 91 1000.00 7.69 39.56 0 39.56 0/1
chr1 77763542 rs1167206 G A . PASS 0.9251000 0.9899000 1.0000000 1.0000000 1.0000000 0.9788000 35.6 70.0 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 78024284 rs6675743 T C . PASS 0.5401000 0.8357000 0.7411000 0.7614000 0.6391000 0.6853000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 78024345 rs79671213 C CTAT . PASS 0.3260000 0.8170000 0.7411000 0.7465000 0.6207000 0.6196000 36.53 70.0 42 1000.00 2.56 97.62 0 100.00 1/1
chr1 78033981 rs145860524 AAAATG A . PASS 0.2867000 0.7767000 0.5992000 0.7078000 0.4611000 0.5361000 36.18 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 78045369 rs1565852 G A . PASS 0.5008000 0.7983000 0.7381000 0.7247000 0.4928000 0.6332000 36.25 70.0 16 620.83 0.00 100.00 0 100.00 1/1
chr1 78269207 rs7525870 G A . PASS 0.1914000 0.1988000 0.4157000 0.2734000 0.0798000 0.2322000 35.8 68.0 10 370.22 0.00 100.00 0 100.00 1/1
chr1 78276977 rs4121165 G A . PASS 0.1770000 0.1585000 0.4167000 0.2177000 0.0593000 0.2079000 36.43 69.14 108 1000.00 4.76 38.89 0 38.89 0/1
chr1 78312788 rs7417104 A G . PASS 0.9501000 0.8055000 0.8998000 0.9026000 0.8609000 0.8930000 36.29 70.0 17 662.60 0.00 100.00 0 100.00 1/1
chr1 78313494 rs10873956 G A . PASS 0.8782000 0.7983000 0.8998000 0.9026000 0.8609000 0.8730000 36.35 69.05 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 78314080 rs6695986 A G . PASS 0.3601000 0.6844000 0.7540000 0.7942000 0.7076000 0.6394000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 78314263 rs7410814 G A . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 35.96 70.0 23 901.21 0.00 100.00 0 100.00 1/1
chr1 78383467 rs1749913 G A . PASS 0.7095000 0.7579000 0.7669000 0.8708000 0.7280000 0.7638000 36.68 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 78392446 rs1166698 G A . PASS 0.0106000 0.1167000 0.3800000 0.2107000 0.0665000 0.1508000 36.5 70.0 44 825.58 15.91 54.55 0 54.55 0/1
chr1 78399207 rs4483454 C G . PASS 0.4327000 0.6916000 0.7669000 0.8131000 0.7004000 0.6645000 36.25 70.0 16 616.68 0.00 100.00 0 100.00 1/1
chr1 78430094 . T TAA . PASS . . . . . . 34.0 70.0 10 88.92 60.00 20.00 0 40.00 0/1
chr1 78430689 rs11409017 A AG . PASS 0.9992000 1.0000000 1.0000000 1.0000000 1.0000000 0.9998000 35.83 69.51 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 78471060 rs11384806 T TC . PASS 0.8729000 0.8040000 0.9127000 0.9264000 0.8650000 0.8806000 37.0 70.0 10 298.32 0.00 90.00 0 90.00 0/1
chr1 78478675 rs3790586 G A . PASS 0.4312000 0.6931000 0.7708000 0.8181000 0.6994000 0.6659000 36.43 70.0 21 829.68 0.00 100.00 0 100.00 1/1
chr1 78512053 . C CCGCCGCGCCG . PASS . . . . . . 36.64 70.0 44 352.52 3.15 29.55 0 29.55 0/1
chr1 78533840 rs638668 T C . PASS 0.1634000 0.1585000 0.5069000 0.2624000 0.1053000 0.2404000 35.76 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 78557486 rs485005 A G . PASS 0.1604000 0.1585000 0.5050000 0.2594000 0.1043000 0.2384000 35.71 69.11 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 78557514 rs631045 G A . PASS 0.1604000 0.1585000 0.5040000 0.2594000 0.1053000 0.2384000 36.57 69.14 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 78557608 rs630640 A G . PASS 0.1604000 0.1585000 0.5040000 0.2594000 0.1043000 0.2382000 35.59 70.0 17 650.59 0.00 100.00 0 100.00 1/1
chr1 78557664 rs630245 A C . PASS 0.1604000 0.1585000 0.5040000 0.2594000 0.1043000 0.2382000 36.7 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 78585086 rs540742 T C . PASS 0.2186000 0.1758000 0.6637000 0.2266000 0.2352000 0.3071000 36.25 70.0 59 1000.00 6.89 54.24 0 54.24 0/1
chr1 78601465 rs3838409 C CT . PASS 0.2466000 0.2161000 0.7837000 0.2634000 0.2669000 0.3578000 35.8 70.0 37 610.19 0.32 45.95 0 51.35 0/1
chr1 78688183 rs658377 G A . PASS 0.6354000 0.4135000 0.6657000 0.3588000 0.3773000 0.5048000 36.73 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 78958491 rs35227129 C T . PASS 0.0076000 0.0476000 0.0010000 0.0944000 0.0184000 0.0313000 35.86 70.0 77 1000.00 6.49 54.55 0 54.55 0/1
chr1 78961585 rs1555541 T C . PASS 0.5968000 0.3934000 0.5982000 0.3479000 0.3712000 0.4748000 35.91 70.0 28 330.73 1.95 39.29 0 39.29 0/1
chr1 78961651 rs10489787 A T . PASS 0.2186000 0.1182000 0.0764000 0.2177000 0.1503000 0.1625000 37.0 66.0 12 136.11 20.00 41.67 0 41.67 0/1
chr1 79093818 rs273259 A G . PASS 0.3608000 0.3545000 0.7510000 0.3449000 0.4100000 0.4449000 35.59 70.0 40 533.21 9.41 42.50 0 42.50 0/1
chr1 79094081 rs1333973 T A . PASS 0.3011000 0.3516000 0.7510000 0.3439000 0.4100000 0.4285000 37.0 70.0 62 1000.00 4.59 53.23 0 53.23 0/1
chr1 79094593 rs273257 A G . PASS 0.9992000 0.9957000 1.0000000 0.9771000 0.9949000 0.9936000 36.2 70.0 15 579.06 0.00 100.00 0 100.00 1/1
chr1 79095581 rs987495 T C . PASS 0.1195000 0.2709000 0.2450000 0.2505000 0.2342000 0.2145000 36.39 69.66 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 79106899 rs273252 T C . PASS 0.4425000 0.3617000 0.7510000 0.3588000 0.4039000 0.4690000 37.0 70.0 19 758.16 0.00 100.00 0 100.00 1/1
chr1 79107140 rs35466823 G T . PASS 0.0008000 0.0014000 0.0000000 0.0139000 0.0000000 0.0031949 36.45 70.0 39 752.94 7.69 56.41 0 56.41 0/1
chr1 79128320 rs11577395 A G . PASS 0.5197000 0.3256000 0.4266000 0.4225000 0.4530000 0.4415000 37.0 70.0 12 56.72 16.67 25.00 0 25.00 0/1
chr1 79128570 . G GT . PASS 0.4781000 0.3228000 0.4266000 0.4225000 0.4479000 0.4291000 36.08 70.0 53 854.44 5.37 49.06 0 49.06 0/1
chr1 79215916 rs1780742 T G . PASS 0.8495000 0.9164000 0.9792000 0.8877000 0.9550000 0.9131000 37.0 70.0 11 419.85 0.00 100.00 0 100.00 1/1
chr1 79216267 rs1780743 G C . PASS 0.8480000 0.9006000 0.9792000 0.8559000 0.9080000 0.8950000 37.0 69.0 20 795.78 0.00 100.00 0 100.00 1/1
chr1 79357360 rs2275902 G C . PASS 0.2905000 0.2046000 0.2312000 0.3091000 0.2004000 0.2528000 36.33 70.0 40 582.84 5.00 45.00 0 45.00 0/1
chr1 79383300 rs5775467 CA C . PASS 0.2731000 0.5893000 0.3512000 0.5388000 0.5297000 0.4361000 36.57 70.0 29 449.46 4.93 48.28 0 48.28 0/1
chr1 79383458 rs12569007 A T . PASS 0.5431000 0.6974000 0.7044000 0.6213000 0.6636000 0.6362000 35.4 70.0 42 439.50 11.43 35.71 0 35.71 0/1
chr1 79383766 rs72675852 G T . PASS 0.0371000 0.0303000 0.0000000 0.0736000 0.0143000 0.0315000 36.25 70.0 47 478.23 22.07 34.04 0 34.04 0/1
chr1 79387242 rs3811440 C T . PASS 0.0658000 0.1945000 0.2312000 0.3171000 0.2035000 0.1943000 34.82 70.0 17 351.82 7.49 64.71 0 64.71 0/1
chr1 79392756 rs12754818 C A . PASS 0.4939000 0.6844000 0.7044000 0.6183000 0.6626000 0.6206000 37.0 70.0 48 779.62 5.07 47.92 0 47.92 0/1
chr1 79401927 rs61770681 A G . PASS 0.4939000 0.6844000 0.7044000 0.6193000 0.6626000 0.6208000 34.0 70.0 17 226.50 22.06 47.06 0 47.06 0/1
chr1 79403751 rs985277 T G . PASS 0.4622000 0.6585000 0.7034000 0.5835000 0.6155000 0.5923000 37.0 70.0 15 252.39 5.00 53.33 0 53.33 0/1
chr1 79411888 rs723898 T C . PASS 0.3533000 0.5865000 0.3552000 0.5368000 0.5266000 0.4567000 37.0 70.0 15 214.77 3.81 46.67 0 46.67 0/1
chr1 79520554 rs10874009 C T . PASS 0.8684000 0.9899000 1.0000000 0.9990000 1.0000000 0.9637000 36.37 69.26 19 746.14 0.00 100.00 0 100.00 1/1
chr1 79520923 rs17131734 T C . PASS 0.1369000 0.2522000 0.1548000 0.1740000 0.2883000 0.1935000 37.0 69.81 49 947.85 0.91 55.10 0 55.10 0/1
chr1 79520949 rs6424628 G A . PASS 0.0998000 0.2795000 0.3710000 0.3569000 0.3732000 0.2843000 36.52 69.88 58 825.21 8.55 43.10 0 43.10 0/1
chr1 79622435 rs10782682 T C . PASS 0.3714000 0.4914000 0.6101000 0.5209000 0.5337000 0.4978000 36.16 70.0 65 1000.00 2.29 66.15 0 66.15 0/1
chr1 79986910 rs17453405 C A . PASS 0.0711000 0.2622000 0.1845000 0.4493000 0.3108000 0.2432000 37.0 70.0 46 994.50 20.19 60.87 0 60.87 0/1
chr1 80286411 rs17425287 T C . PASS 0.3941000 0.6095000 0.3145000 0.5815000 0.5153000 0.4692000 35.91 70.0 55 1000.00 0.00 100.00 0 100.00 1/1
chr1 80629156 rs7544028 G C . PASS 0.5310000 0.3890000 0.4831000 0.4046000 0.6421000 0.4980000 36.2 70.0 80 1000.00 1.67 56.25 0 56.25 0/1
chr1 81267525 rs1538258 A T . PASS 0.4955000 0.5951000 0.6647000 0.4891000 0.5419000 0.5511000 36.45 70.0 65 1000.00 0.00 100.00 0 100.00 1/1
chr1 81608126 rs72709955 C T . PASS 0.0015000 0.0000000 0.0000000 0.0119000 0.0020000 0.0031949 37.0 70.0 15 340.08 26.67 66.67 0 66.67 0/1
chr1 81608182 rs1195688 T G . PASS 0.4750000 0.4899000 0.3046000 0.4970000 0.4867000 0.4495000 35.67 69.26 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 81674838 rs72711655 A C . PASS 0.2685000 0.0706000 0.0317000 0.0457000 0.0521000 0.1064000 37.0 70.0 38 266.70 20.00 26.32 0 26.32 0/1
chr1 81892826 rs12121921 C T . PASS 0.4622000 0.6254000 0.3502000 0.7266000 0.6053000 0.5433000 37.0 69.88 27 554.59 3.70 59.26 0 59.26 0/1
chr1 81892985 rs11163290 T C . PASS 0.6959000 0.8948000 0.9345000 0.8290000 0.8855000 0.8353000 36.08 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 81928412 rs13375219 A C . PASS 0.3411000 0.4986000 0.3085000 0.6223000 0.5419000 0.4521000 37.0 70.0 18 712.24 0.00 100.00 0 100.00 1/1
chr1 81967466 . T TCAGCAGCAG . PASS . . . . . . 36.92 69.81 50 1000.00 5.33 54.00 0 60.00 0/1
chr1 82187434 rs72715729 C T . PASS 0.0000000 0.0000000 0.0000000 0.0060000 0.0000000 0.0011981 35.8 70.0 20 313.03 10.00 50.00 0 50.00 0/1
chr1 82188202 rs72715731 C G . PASS 0.0053000 0.0375000 0.0010000 0.0258000 0.0532000 0.0224000 37.0 70.0 38 559.10 0.62 44.74 0 44.74 0/1
chr1 82188756 rs72715733 G A . PASS 0.0840000 0.0821000 0.0486000 0.1183000 0.1339000 0.0933000 37.0 70.0 14 301.32 1.59 64.29 0 64.29 0/1
chr1 82268100 rs12759035 C G . PASS 0.0212000 0.0504000 0.0317000 0.1024000 0.2198000 0.0825000 36.57 70.0 53 961.41 1.89 52.83 0 52.83 0/1
chr1 82268192 rs35363566 C G . PASS 0.0182000 0.0490000 0.0317000 0.1024000 0.2198000 0.0815000 36.22 70.0 96 1000.00 6.61 47.92 0 47.92 0/1
chr1 82268201 rs35594624 A G . PASS 0.0182000 0.0490000 0.0317000 0.1024000 0.2198000 0.0815000 36.47 70.0 95 1000.00 7.95 47.37 0 47.37 0/1
chr1 82302600 rs12064537 T C . PASS 0.3608000 0.2666000 0.0655000 0.4622000 0.4213000 0.3205000 37.0 70.0 22 235.47 29.55 36.36 0 36.36 0/1
chr1 82402364 rs3831111,rs142993868 TAATC T . PASS 0.1997000 0.2161000 0.1657000 0.3569000 0.2812000 0.2426000 35.61 70.0 44 549.37 11.62 40.91 0 40.91 0/1
chr1 82421596 rs11163397 C T . PASS 0.9803000 0.9942000 1.0000000 1.0000000 1.0000000 0.9940000 36.69 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 82431964 rs72719412 G A . PASS 0.0008000 0.0000000 0.0000000 0.0010000 0.0000000 0.0003994 35.29 70.0 19 190.73 3.01 36.84 0 36.84 0/1
chr1 82437670 rs144957268 ATTTGT A . PASS 0.2534000 0.3084000 0.1558000 0.3370000 0.1943000 0.2466000 37.0 70.0 13 249.99 7.69 61.54 0 61.54 0/1
chr1 82437682 rs41292976 G A . PASS 0.3147000 0.3141000 0.1558000 0.3370000 0.1943000 0.2636000 37.0 70.0 12 265.57 16.67 66.67 0 66.67 0/1
chr1 82652634 rs10677614,rs67312208,rs35296122 T TAA . PASS 0.4796000 0.5029000 0.5169000 0.5179000 0.5276000 0.5074000 35.5 70.0 34 800.06 11.76 41.18 0 70.59 0/1
chr1 83597301 rs6664860 T C . PASS 0.4138000 0.4856000 0.4980000 0.3439000 0.4233000 0.4285000 36.48 69.78 93 1000.00 0.00 100.00 0 100.00 1/1
chr1 83855668 rs75994283 T A . PASS 0.0484000 0.3545000 0.5238000 0.3569000 0.5082000 0.3383000 37.0 68.5 10 100.36 40.00 40.00 0 40.00 0/1
chr1 83855793 rs201053203 T C . PASS 0.2511000 0.1643000 0.1508000 0.1928000 0.1462000 0.1867000 37.0 61.87 39 476.71 1.03 38.46 0 38.46 0/1
chr1 83956087 rs7516943 T C . PASS 0.1702000 0.2925000 0.2847000 0.3489000 0.2986000 0.2712000 35.29 70.0 36 419.94 15.87 38.89 0 38.89 0/1
chr1 84295861 rs2179763 A G . PASS 0.5416000 0.3847000 0.5089000 0.4155000 0.4908000 0.4780000 36.65 70.0 86 1000.00 9.44 39.53 0 39.53 0/1
chr1 84335779 . T C . PASS . . . . . . 37.0 70.0 45 124.49 19.05 15.56 0 15.56 0/1
chr1 84551736 rs12404263 G A . PASS 0.2746000 0.3487000 0.2827000 0.4543000 0.2853000 0.3247000 36.43 70.0 34 730.36 2.52 61.76 0 61.76 0/1
chr1 84611998 rs6576963 T C . PASS 0.4213000 0.3862000 0.3839000 0.5388000 0.3681000 0.4221000 37.0 70.0 41 763.07 3.77 53.66 0 53.66 0/1
chr1 84640691 rs582201 T G . PASS 0.9259000 0.9467000 0.9355000 0.9950000 0.9683000 0.9529000 37.0 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 84640834 rs12132002 T G . PASS 0.1074000 0.2406000 0.3810000 0.3698000 0.2986000 0.2710000 35.5 70.0 13 246.40 13.46 61.54 0 61.54 0/1
chr1 84791239 rs315555 T C . PASS 0.8767000 0.8242000 0.8562000 0.9175000 0.9018000 0.8784000 37.0 68.75 16 632.84 0.00 100.00 0 100.00 1/1
chr1 84918166 rs4907069 A G . PASS 0.9100000 0.9841000 1.0000000 0.9990000 1.0000000 0.9738000 36.28 69.7 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 84944989 rs2292191 A G . PASS 0.2005000 0.4625000 0.7331000 0.6571000 0.4806000 0.4904000 36.65 69.41 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 84946745 rs7413066 C T . PASS 0.9584000 0.9971000 1.0000000 0.9990000 1.0000000 0.9884000 35.62 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 85113203 rs2994949 T C . PASS 0.6135000 0.8588000 0.7917000 0.8787000 0.7464000 0.7626000 37.0 69.38 62 1000.00 2.62 51.61 0 51.61 0/1
chr1 85113229 rs1057746 A G . PASS 0.2458000 0.5346000 0.7034000 0.6521000 0.5174000 0.5126000 37.0 69.13 50 777.75 9.04 46.00 0 46.00 0/1
chr1 85128262 rs2911563 A G . PASS 0.6309000 0.6326000 0.7202000 0.7893000 0.6166000 0.6781000 36.14 68.57 29 453.02 19.21 48.28 0 48.28 0/1
chr1 85128280 rs2994437 T C . PASS 0.8026000 0.9078000 0.7937000 0.9533000 0.8364000 0.8522000 35.8 70.0 22 307.00 3.64 45.45 0 45.45 0/1
chr1 85136521 . TATAA T . PASS 0.0008000 0.0029000 0.0000000 0.0030000 0.0000000 0.0011981 37.0 68.57 32 449.44 5.36 43.75 0 43.75 0/1
chr1 85289748 rs9729034 G A . PASS 0.4145000 0.3905000 0.5298000 0.4284000 0.5020000 0.4543000 37.0 70.0 89 1000.00 8.63 42.70 0 42.70 0/1
chr1 85331808 rs113879527,rs58203951,rs146269415 G GAGA . PASS 0.9516000 0.7896000 0.5327000 0.7386000 0.6442000 0.7420000 36.29 70.0 26 519.99 0.96 61.54 0 61.54 0/1
chr1 85392324 rs6681025 C T . PASS 0.1377000 0.2983000 0.3710000 0.3300000 0.2280000 0.2632000 37.0 70.0 55 720.93 0.00 40.00 0 40.00 0/1
chr1 85397286 rs34793286 G C . PASS 0.0439000 0.2608000 0.3879000 0.3002000 0.3211000 0.2488000 37.0 70.0 22 398.41 19.70 54.55 0 54.55 0/1
chr1 85418307 rs677476 C G . PASS 0.6067000 0.5504000 0.6607000 0.4901000 0.5256000 0.5705000 37.0 70.0 10 183.90 6.67 60.00 0 60.00 0/1
chr1 85422061 rs632545 C T . PASS 0.5545000 0.5418000 0.6607000 0.4861000 0.5174000 0.5531000 36.2 70.0 29 494.79 17.01 51.72 0 51.72 0/1
chr1 85424182 rs673998 A G . PASS 0.4493000 0.2968000 0.4018000 0.3250000 0.3272000 0.3698000 37.0 70.0 12 140.26 13.33 41.67 0 41.67 0/1
chr1 85462582 rs11161503 C G . PASS 0.2496000 0.5029000 0.6300000 0.4662000 0.4918000 0.4521000 37.0 70.0 35 693.44 4.29 57.14 0 57.14 0/1
chr1 85488030 rs2028304 G A . PASS 0.8298000 0.7522000 0.7331000 0.8400000 0.8016000 0.7961000 36.35 70.0 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 85511057 . AA A . PASS . . . . . . 35.67 67.78 25 246.65 35.56 36.00 1 36.00 0/1
chr1 85511057 rs199625574 AAAC A . PASS 0.0030000 0.0231000 0.0010000 0.0596000 0.0245000 0.0210000 35.67 67.78 31 246.65 39.43 29.03 1 29.03 0/1
chr1 85511058 . AA A . PASS . . . . . . 35.67 67.78 23 252.67 33.82 39.13 1 39.13 0/1
chr1 85511059 . AC A . PASS . . . . . . 35.67 67.78 23 252.67 33.82 39.13 1 39.13 0/1
chr1 85547945 rs7534574 T C . PASS 0.4349000 0.4986000 0.2738000 0.5378000 0.4663000 0.4381000 37.0 70.0 17 208.76 1.68 41.18 0 41.18 0/1
chr1 85551423 rs12130198 A G . PASS 0.1611000 0.1643000 0.2401000 0.2008000 0.2577000 0.2043000 37.0 70.0 16 295.30 6.94 56.25 0 56.25 0/1
chr1 85551468 rs111823967,rs78237272 A ATCAGTTTTTCT . PASS 0.5961000 0.5403000 0.4891000 0.6044000 0.5164000 0.5529000 37.0 70.0 32 373.64 13.46 40.62 0 40.62 0/1
chr1 85559118 rs11304107 CT C . PASS 0.6884000 0.6686000 0.5863000 0.6352000 0.5460000 0.6266000 35.27 70.0 22 835.86 0.00 100.00 0 100.00 1/1
chr1 85560313 rs709765 T C . PASS 0.6725000 0.6268000 0.4444000 0.5706000 0.5297000 0.5719000 37.0 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 85561546 rs709766 T C . PASS 0.6702000 0.6268000 0.4375000 0.5716000 0.5286000 0.5699000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 85573705 rs11427716 A AC . PASS . . . . . . 35.94 70.0 33 1000.00 2.46 96.97 0 96.97 1/1
chr1 85583162 rs6576749 C G . PASS 0.5908000 0.6599000 0.5893000 0.5477000 0.6339000 0.5998000 36.03 70.0 88 1000.00 3.26 42.05 0 42.05 0/1
chr1 85589939 rs11356964 GT G . PASS 0.5575000 0.7464000 0.5794000 0.6918000 0.8149000 0.6653000 36.76 70.0 101 1000.00 0.00 100.00 0 100.00 1/1
chr1 85595645 rs1020770 C T . PASS 0.3782000 0.6354000 0.5685000 0.6978000 0.8006000 0.5988000 37.0 70.0 21 841.70 0.00 100.00 0 100.00 1/1
chr1 85598527 rs36118758,rs5775826 TC T . PASS 0.9365000 0.9942000 1.0000000 1.0000000 1.0000000 0.9824000 36.09 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 85624549 rs709786 C T . PASS 0.9970000 1.0000000 1.0000000 1.0000000 1.0000000 0.9992000 36.16 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 85624864 rs817412 G A . PASS 0.9319000 0.9942000 1.0000000 0.9990000 1.0000000 0.9810000 35.73 70.0 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 85647713 rs817444 T C . PASS 0.9259000 0.9942000 1.0000000 0.9990000 1.0000000 0.9794000 35.29 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 85648620 rs817443 C T . PASS 0.9259000 0.9942000 1.0000000 0.9990000 1.0000000 0.9794000 36.18 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 85648905 rs11161539 T C . PASS 0.2443000 0.5202000 0.5397000 0.6421000 0.7168000 0.5142000 37.0 70.0 17 674.61 0.00 100.00 0 100.00 1/1
chr1 85725353 rs112918702 GCCGGAAA G . PASS 0.4682000 0.3170000 0.3363000 0.4006000 0.4550000 0.4046000 36.36 70.0 137 1000.00 0.00 100.00 0 100.00 1/1
chr1 85741921 rs2735594 G C . PASS 0.8442000 0.6873000 0.7173000 0.7913000 0.7638000 0.7706000 36.66 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 85742012 rs11576939 G C . PASS 0.2663000 0.2032000 0.0744000 0.3111000 0.2679000 0.2282000 36.49 70.0 95 1000.00 0.00 100.00 0 100.00 1/1
chr1 85787114 rs233116 A T . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.73 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 86046561 rs2297140 C A . PASS 0.5893000 0.5375000 0.5784000 0.5278000 0.6820000 0.5857000 34.33 70.0 16 267.14 8.33 56.25 0 56.25 0/1
chr1 86146672 rs3767162 G A . PASS 0.1551000 0.3674000 0.4395000 0.4513000 0.5767000 0.3836000 37.0 70.0 13 179.02 46.15 46.15 0 46.15 0/1
chr1 86167957 rs1764298 C T . PASS 0.3442000 0.7133000 0.9157000 0.8400000 0.8395000 0.7067000 37.0 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 86173298 rs1539444 C T . PASS 0.3578000 0.5274000 0.5119000 0.5159000 0.3589000 0.4443000 36.14 70.0 44 407.86 5.19 31.82 0 31.82 0/1
chr1 86210546 rs7547023 G A . PASS 0.6823000 0.8170000 0.9306000 0.9692000 0.8783000 0.8468000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 86246849 rs313722 A C . PASS 0.5620000 0.7233000 0.7788000 0.8390000 0.7638000 0.7230000 36.54 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 86249911 rs313725 A G . PASS 0.6278000 0.9006000 0.9444000 0.9642000 0.9325000 0.8564000 36.76 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 86252025 rs12746325 A G . PASS 0.1573000 0.2752000 0.0694000 0.4712000 0.2863000 0.2442000 35.0 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 86289082 rs1842579 C T . PASS 0.2201000 0.2478000 0.0685000 0.4235000 0.2628000 0.2426000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 86313536 rs1962482 G T . PASS 0.3495000 0.1354000 0.0069000 0.1262000 0.2106000 0.1789000 37.0 70.0 17 204.60 6.72 41.18 0 41.18 0/1
chr1 86340262 rs12136023 C A . PASS 0.4743000 0.2637000 0.0367000 0.3787000 0.1871000 0.2817000 35.71 69.29 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 86340880 rs1564515 A G . PASS 0.4758000 0.2680000 0.0367000 0.3797000 0.1892000 0.2833000 36.08 68.46 13 495.52 0.00 100.00 0 100.00 1/1
chr1 86361802 rs7541806 C G . PASS 0.5832000 0.7795000 0.8036000 0.7008000 0.6697000 0.6953000 37.0 70.0 37 478.56 3.60 40.54 0 40.54 0/1
chr1 86375654 rs1502657 C G . PASS 0.5696000 0.7795000 0.8026000 0.7008000 0.6718000 0.6919000 35.29 70.0 75 578.78 1.90 28.00 0 28.00 0/1
chr1 86453237 rs11799965 T G . PASS 0.1755000 0.3847000 0.2212000 0.3002000 0.0777000 0.2196000 36.45 70.0 36 761.96 7.07 61.11 0 61.11 0/1
chr1 86453409 rs589698 C T . PASS 0.2284000 0.1758000 0.1984000 0.2773000 0.2526000 0.2296000 37.0 70.0 12 98.49 0.00 33.33 0 33.33 0/1
chr1 86482958 rs17128726 T A . PASS 0.1808000 0.0720000 0.4405000 0.0268000 0.1708000 0.1851000 35.0 70.0 13 162.86 7.69 46.15 0 46.15 0/1
chr1 86487914 rs11161721 C A . PASS 0.2254000 0.3473000 0.2688000 0.2873000 0.2055000 0.2596000 36.57 70.0 61 937.34 8.78 45.90 0 45.90 0/1
chr1 86487981 rs516213 G A . PASS 0.9327000 0.7536000 0.8720000 0.6431000 0.6779000 0.7877000 36.03 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 86487992 rs5775882 A AACAG . PASS 0.9289000 0.7507000 0.8552000 0.6392000 0.6687000 0.7804000 36.46 70.0 32 1000.00 3.02 96.88 0 96.88 1/1
chr1 86512536 rs60891279 C T . PASS 0.1097000 0.2651000 0.2788000 0.1322000 0.1820000 0.1839000 36.61 70.0 73 1000.00 4.60 42.47 0 42.47 0/1
chr1 86557967 rs11161732 G A . PASS 0.3563000 0.4467000 0.3849000 0.3767000 0.3129000 0.3702000 36.08 70.0 30 408.23 21.03 43.33 0 43.33 0/1
chr1 86590915 rs2174767 G A . PASS 0.8941000 0.9870000 0.9722000 0.9990000 1.0000000 0.9645000 36.36 70.0 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 86590948 rs11161746 A G . PASS 0.0794000 0.1614000 0.0605000 0.1650000 0.2536000 0.1382000 36.0 70.0 55 780.45 11.21 43.64 0 43.64 0/1
chr1 86591837 rs11161747 G A . PASS 0.5401000 0.7176000 0.6220000 0.7425000 0.6595000 0.6452000 36.5 70.0 53 798.48 4.25 45.28 0 45.28 0/1
chr1 86621543 rs4656131 A T . PASS 0.4478000 0.5677000 0.3542000 0.6352000 0.3763000 0.4692000 37.0 70.0 114 1000.00 3.25 58.77 0 58.77 0/1
chr1 86621547 rs4656132 G T . PASS 0.4478000 0.5677000 0.3542000 0.6352000 0.3763000 0.4692000 34.52 70.0 111 1000.00 2.92 56.76 0 56.76 0/1
chr1 86621992 rs1999747 C A . PASS 0.4607000 0.6686000 0.5506000 0.7018000 0.4315000 0.5503000 36.33 70.0 39 585.85 8.55 46.15 0 46.15 0/1
chr1 86818572 rs272496 T C . PASS 0.7557000 0.6585000 0.8284000 0.6451000 0.7894000 0.7412000 36.08 70.0 23 429.31 16.72 56.52 0 56.52 0/1
chr1 86820267 rs1182098 C T . PASS 0.7821000 0.6700000 0.8284000 0.6551000 0.8037000 0.7546000 37.0 69.33 47 1000.00 15.46 63.83 0 63.83 0/1
chr1 86822231 rs385437 A G . PASS 0.1104000 0.1167000 0.0327000 0.1710000 0.1840000 0.1222000 37.0 70.0 66 854.91 9.09 39.39 0 39.39 0/1
chr1 86838158 rs421105 C T . PASS 0.7821000 0.6700000 0.8284000 0.6551000 0.8037000 0.7546000 37.0 70.0 35 154.58 0.00 20.00 0 20.00 0/1
chr1 86847955 rs272516 G A . PASS 0.5371000 0.3977000 0.2897000 0.3260000 0.3446000 0.3880000 37.0 70.0 35 279.88 5.71 28.57 0 28.57 0/1
chr1 86891005 rs1158506 C A . PASS 0.4750000 0.5677000 0.5893000 0.6113000 0.5654000 0.5559000 37.0 70.0 15 294.17 8.89 60.00 0 60.00 0/1
chr1 86894241 rs72720125 C T . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 70.0 52 897.04 3.85 50.00 0 50.00 0/1
chr1 86896706 rs3737673 C A . PASS 0.1520000 0.3228000 0.1796000 0.3469000 0.2290000 0.2354000 35.74 70.0 31 639.70 1.36 61.29 0 61.29 0/1
chr1 86897970 rs12407985 T A . PASS 0.1520000 0.3228000 0.1796000 0.3479000 0.2290000 0.2356000 37.0 70.0 12 177.88 16.67 50.00 0 50.00 0/1
chr1 86897973 rs1334150 T C . PASS 0.7799000 0.8069000 0.7351000 0.8728000 0.8753000 0.8119000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 86900332 rs17449526 T C . PASS 0.1513000 0.3228000 0.1796000 0.3449000 0.2290000 0.2348000 36.76 70.0 106 1000.00 1.96 48.11 0 48.11 0/1
chr1 86900372 rs17409304 C G . PASS 0.1513000 0.3228000 0.1796000 0.3449000 0.2290000 0.2348000 37.0 70.0 71 1000.00 1.52 52.11 0 52.11 0/1
chr1 86900491 rs56408800 C T . PASS 0.1513000 0.3228000 0.1776000 0.3439000 0.2331000 0.2350000 35.29 70.0 19 190.72 13.53 36.84 0 36.84 0/1
chr1 86909703 rs3820039 T C . PASS 0.1377000 0.3040000 0.1319000 0.2952000 0.1483000 0.1933000 37.0 70.0 48 533.15 0.98 35.42 0 35.42 0/1
chr1 86939130 rs2145412 C T . PASS 0.6725000 0.9308000 0.9871000 0.9513000 0.9519000 0.8822000 34.95 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 86939390 rs2180762 G A . PASS 0.7784000 0.9582000 0.9871000 0.9543000 0.9550000 0.9151000 36.2 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 86952324 rs2734705 A G . PASS 0.9425000 0.9078000 0.8472000 0.8350000 0.8916000 0.8870000 36.71 70.0 83 1000.00 0.00 100.00 0 100.00 1/1
chr1 86954591 rs2075632 T C . PASS 0.1362000 0.3530000 0.0942000 0.3787000 0.2658000 0.2318000 36.48 70.0 23 913.22 0.00 100.00 0 100.00 1/1
chr1 86959014 rs2753346 T C . PASS 0.7292000 0.9020000 0.9107000 0.8648000 0.9192000 0.8540000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 86959173 rs2791494 T C . PASS 0.7753000 0.8761000 0.9058000 0.8241000 0.8998000 0.8496000 36.56 70.0 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 86959796 rs1321689 C T . PASS 0.7148000 0.6470000 0.6954000 0.7435000 0.7863000 0.7212000 37.0 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 86981315 rs2753368 C G . PASS 0.4032000 0.6700000 0.3661000 0.6074000 0.4847000 0.4896000 36.28 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 87036746 rs772599 C A . PASS 0.8759000 0.8617000 0.9395000 0.7525000 0.8896000 0.8646000 36.02 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 87045896 rs4001061,rs77067122 TCCTACA T . PASS 0.5363000 0.7925000 0.7282000 0.7207000 0.8415000 0.7071000 36.27 69.84 128 1000.00 0.00 100.00 0 100.00 1/1
chr1 87368917 rs573680 A G . PASS 0.5038000 0.1614000 0.0357000 0.1958000 0.1534000 0.2318000 37.0 70.0 21 196.72 19.05 33.33 0 33.33 0/1
chr1 87369176 rs571015 C T . PASS 0.5030000 0.1614000 0.0357000 0.1958000 0.1534000 0.2316000 35.29 70.0 13 208.78 37.36 53.85 0 53.85 0/1
chr1 87511177 rs4656138 C T . PASS 0.4100000 0.8213000 0.9643000 0.7873000 0.8354000 0.7374000 36.37 70.0 19 746.14 0.00 100.00 0 100.00 1/1
chr1 87512392 rs12756724 T C . PASS 0.5530000 0.8473000 0.9653000 0.8151000 0.8804000 0.7933000 36.33 70.0 18 704.37 0.00 100.00 0 100.00 1/1
chr1 87549858 rs2798675 A G . PASS 0.8555000 0.9467000 0.9940000 0.9513000 0.9673000 0.9371000 37.0 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 87563668 rs1199677 G A . PASS 0.9289000 0.9697000 0.9950000 0.9781000 0.9755000 0.9669000 35.86 69.52 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 87570398 rs1621247 G A . PASS 0.3079000 0.8084000 0.9653000 0.7843000 0.8333000 0.7079000 36.49 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 87699558 rs7546843 A G . PASS 0.6369000 0.5130000 0.6865000 0.4672000 0.5542000 0.5795000 36.68 70.0 76 1000.00 0.00 100.00 0 100.00 1/1
chr1 87699576 rs10430050 T A . PASS 0.4894000 0.3184000 0.2540000 0.3708000 0.3988000 0.3768000 36.69 70.0 77 1000.00 0.00 100.00 0 100.00 1/1
chr1 87716226 rs11161953 T A . PASS 0.1278000 0.1354000 0.2143000 0.1809000 0.1984000 0.1707000 35.86 70.0 84 1000.00 0.00 100.00 0 100.00 1/1
chr1 87757594 rs57115619 T TACAC . PASS . . . . . . 36.0 70.0 10 281.91 5.00 80.00 0 90.00 1/1
chr1 88294293 rs2491285 C T . PASS 0.5166000 0.5663000 0.6389000 0.6352000 0.4785000 0.5645000 36.45 70.0 41 751.06 7.32 53.66 0 53.66 0/1
chr1 88603134 rs1932760 T G . PASS 0.1097000 0.1167000 0.4395000 0.0656000 0.1524000 0.1765000 36.43 70.0 43 699.13 7.09 48.84 0 48.84 0/1
chr1 88971661 rs11402045 T TC . PASS 0.4319000 0.5591000 0.5198000 0.4423000 0.3364000 0.4507000 36.23 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 89123061 rs7556616 T G . PASS 0.8933000 0.9870000 1.0000000 0.9990000 1.0000000 0.9698000 36.1 69.5 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 89225976 rs430600 T C . PASS 0.9304000 0.5807000 0.6498000 0.6561000 0.8292000 0.7506000 37.0 70.0 38 521.48 5.26 42.11 0 42.11 0/1
chr1 89237078 rs9287139 A G . PASS 0.1974000 0.0245000 0.0000000 0.0348000 0.0133000 0.0651000 35.0 70.0 13 167.01 28.21 46.15 0 46.15 0/1
chr1 89237556 rs9651072 C T . PASS 0.3593000 0.0490000 0.0337000 0.0447000 0.0798000 0.1330000 37.0 70.0 52 938.81 10.26 51.92 0 51.92 0/1
chr1 89272962 rs11808481 T G . PASS 0.0855000 0.0144000 0.0000000 0.0338000 0.0133000 0.0339000 34.0 70.0 34 171.20 51.47 23.53 0 23.53 0/1
chr1 89273152 rs11809597 G T . PASS 0.1974000 0.0245000 0.0000000 0.0348000 0.0133000 0.0651000 35.91 70.0 37 746.94 0.74 59.46 0 59.46 0/1
chr1 89273287 rs6671949 G A . PASS 0.1974000 0.0245000 0.0000000 0.0348000 0.0133000 0.0651000 35.22 70.0 64 854.67 7.99 42.19 0 42.19 0/1
chr1 89319082 rs60992421 C T . PASS 0.3442000 0.0346000 0.0000000 0.0358000 0.0133000 0.1054000 36.5 70.0 29 870.72 6.03 82.76 0 82.76 0/1
chr1 89322982 rs2794318 G A . PASS 0.9493000 0.9957000 1.0000000 1.0000000 1.0000000 0.9860000 35.88 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 89367758 rs56218332 T C . PASS 0.0023000 0.0000000 0.0000000 0.0070000 0.0010000 0.0021965 37.0 69.29 21 489.10 9.52 66.67 0 66.67 0/1
chr1 89426902 rs3738055 G A . PASS 0.2307000 0.5043000 0.4633000 0.4771000 0.2536000 0.3694000 36.36 70.0 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 89449278 rs201168911 C T . PASS . . . . . . 35.8 67.35 148 333.46 14.59 13.51 0 13.51 0/1
chr1 89449298 rs111779380 C G . PASS . . . . . . 36.56 67.59 154 615.65 9.43 17.53 0 17.53 0/1
chr1 89449390 rs112636230 T C . PASS . . . . . . 36.37 68.79 127 366.90 3.98 14.96 0 14.96 0/1
chr1 89449399 rs77567101 T C . PASS . . . . . . 37.0 68.37 124 387.94 1.27 15.32 0 15.32 0/1
chr1 89449434 rs2893084 T C . PASS . . . . . . 35.29 68.14 109 200.21 16.25 12.84 0 12.84 0/1
chr1 89449483 rs74100106 C G . PASS . . . . . . 37.0 67.22 63 149.70 19.05 14.29 0 14.29 0/1
chr1 89474818 rs17433780 A G . PASS 0.2587000 0.2637000 0.2113000 0.3201000 0.2485000 0.2602000 37.0 70.0 28 426.27 1.65 46.43 0 46.43 0/1
chr1 89475135 rs10493821 C T . PASS 0.0439000 0.2421000 0.2034000 0.3201000 0.2474000 0.1987000 36.67 68.86 64 1000.00 1.04 56.25 0 56.25 0/1
chr1 89475230 rs4142706 T G . PASS 0.6021000 0.5648000 0.5962000 0.4354000 0.4663000 0.5357000 37.0 69.86 13 216.64 2.20 53.85 0 53.85 0/1
chr1 89478854 rs4656076 C G . PASS 0.2534000 0.5576000 0.5268000 0.7604000 0.7393000 0.5473000 36.18 69.89 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 89479063 rs4656077 G A . PASS 0.1793000 0.2925000 0.3075000 0.4404000 0.4888000 0.3337000 36.57 70.0 75 899.34 4.10 37.33 0 37.33 0/1
chr1 89479074 rs4656078 C T . PASS 0.1793000 0.2925000 0.3075000 0.4404000 0.4898000 0.3339000 37.0 70.0 71 1000.00 0.09 42.25 0 42.25 0/1
chr1 89479758 rs3795543 T C . PASS 0.6165000 0.5692000 0.5188000 0.7614000 0.7393000 0.6434000 36.5 70.0 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 89520329 rs66614512,rs72054220 GAAAAAC G . PASS 0.2239000 0.3271000 0.3810000 0.4940000 0.5358000 0.3850000 35.71 69.14 30 312.14 16.19 46.67 0 46.67 0/1
chr1 89520574 rs10922554 C A . PASS 0.7958000 0.6153000 0.5585000 0.7694000 0.8016000 0.7189000 36.14 69.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 89521841 rs1048443 G C . PASS 0.5749000 0.3055000 0.2014000 0.3022000 0.3098000 0.3558000 36.75 66.33 107 1000.00 1.36 44.86 0 44.86 0/1
chr1 89522512 rs4376712 C T . PASS 0.2005000 0.3040000 0.3581000 0.4632000 0.4928000 0.3564000 37.0 69.83 16 169.99 20.83 37.50 0 37.50 0/1
chr1 89522646 rs1048425 G C . PASS 0.7958000 0.6138000 0.5595000 0.7654000 0.8027000 0.7183000 36.61 69.01 92 1000.00 0.00 100.00 0 100.00 1/1
chr1 89523927 rs60070945 C T . PASS 0.2496000 0.2839000 0.1200000 0.2992000 0.3047000 0.2490000 37.0 70.0 36 569.27 14.71 47.22 0 47.22 0/1
chr1 89525812 rs6701673 C G . PASS 0.5227000 0.3026000 0.2014000 0.3012000 0.3098000 0.3415000 35.96 69.87 49 752.59 0.71 46.94 0 46.94 0/1
chr1 89525820 rs61798936 C T . PASS 0.2890000 0.2853000 0.1220000 0.2992000 0.3047000 0.2600000 36.59 69.79 59 989.27 5.61 49.15 0 49.15 0/1
chr1 89569973 rs7513609 G C . PASS 0.4924000 0.6816000 0.7718000 0.6441000 0.6401000 0.6342000 37.0 69.89 37 603.88 2.70 48.65 0 48.65 0/1
chr1 89574026 rs1329119 G A . PASS 0.8011000 0.7190000 0.7847000 0.6750000 0.6851000 0.7384000 35.91 70.0 18 360.82 10.10 61.11 0 61.11 0/1
chr1 89579941 rs2230338 T C . PASS 0.4614000 0.6801000 0.7758000 0.6441000 0.6421000 0.6270000 36.48 69.09 108 1000.00 4.43 42.59 0 42.59 0/1
chr1 89582690 rs1803632 G C . PASS 0.4622000 0.6801000 0.7758000 0.6431000 0.6421000 0.6270000 37.0 70.0 35 359.29 24.76 34.29 0 34.29 0/1
chr1 89597755 rs942442 T C . PASS 0.4697000 0.6787000 0.7728000 0.6451000 0.6431000 0.6288000 37.0 70.0 15 89.46 3.33 26.67 0 26.67 0/1
chr1 89615979 rs586609 C T . PASS 0.7254000 0.7017000 0.7748000 0.6461000 0.6524000 0.7019000 35.11 68.95 41 601.73 1.28 46.34 0 46.34 0/1
chr1 89637578 rs676913 G A . PASS 0.7776000 0.7046000 0.7718000 0.6431000 0.6513000 0.7147000 36.49 70.0 89 1000.00 6.22 52.81 0 52.81 0/1
chr1 89650850 rs623134 A T . PASS 0.2685000 0.3271000 0.3998000 0.4901000 0.5082000 0.3944000 37.0 70.0 21 317.87 6.67 47.62 0 47.62 0/1
chr1 89660991 rs75750014 C G . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 35.8 70.0 52 212.56 16.15 19.23 0 19.23 0/1
chr1 89730723 rs9628688 C T . PASS 0.3336000 0.3718000 0.3234000 0.5746000 0.5429000 0.4261000 35.91 70.0 11 411.98 0.00 100.00 0 100.00 1/1
chr1 89731959 rs12729209 G A . PASS 0.3041000 0.3703000 0.3115000 0.5736000 0.5419000 0.4153000 37.0 70.0 19 758.16 0.00 100.00 0 100.00 1/1
chr1 89733273 rs6690597 T C . PASS 0.4486000 0.3804000 0.3264000 0.5736000 0.5429000 0.4581000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 89755671 rs623771 T A . PASS 0.8192000 0.7406000 0.4881000 0.6700000 0.4468000 0.6390000 36.25 70.0 35 514.35 0.71 45.71 0 45.71 0/1
chr1 89845926 rs11361992,rs67367078 GT G . PASS 0.9228000 0.9107000 0.7272000 0.8897000 0.8517000 0.8612000 36.56 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 89847372 rs4658359 G T . PASS 0.9092000 0.8415000 0.7262000 0.7465000 0.7843000 0.8059000 36.79 69.83 115 1000.00 0.00 100.00 0 100.00 1/1
chr1 89847411 rs4658360 C T . PASS 0.9092000 0.8415000 0.7262000 0.7465000 0.7843000 0.8059000 35.36 69.74 95 1000.00 0.00 100.00 0 100.00 1/1
chr1 89847444 rs4658146 A G . PASS 0.9100000 0.8429000 0.7252000 0.7485000 0.7843000 0.8065000 36.6 69.07 89 1000.00 0.00 100.00 0 100.00 1/1
chr1 89849201 rs928652 C G . PASS 0.9160000 0.9193000 0.7272000 0.8897000 0.8517000 0.8606000 35.91 70.0 11 407.83 0.00 100.00 0 100.00 1/1
chr1 89849350 rs928653 G A . PASS 0.9160000 0.9193000 0.7272000 0.8897000 0.8517000 0.8606000 36.52 70.0 25 996.76 0.00 100.00 0 100.00 1/1
chr1 89849742 rs959460 A T . PASS 0.9160000 0.9193000 0.7272000 0.8897000 0.8517000 0.8606000 35.47 70.0 94 1000.00 0.00 100.00 0 100.00 1/1
chr1 89851100 . G GTT . PASS . . . . . . 33.4 70.0 14 463.57 14.29 35.71 0 92.86 0/1
chr1 89851100 rs371623293,rs373140356,rs369061637,rs370034390 G GT . PASS 0.6422000 0.6542000 0.5536000 0.6511000 0.6022000 0.6200000 33.73 70.0 14 463.57 10.71 57.14 0 92.86 0/1
chr1 89885854 rs6673154 G A . PASS 0.9213000 0.9236000 0.7282000 0.8887000 0.8517000 0.8626000 36.14 68.91 57 1000.00 1.75 98.25 0 98.25 1/1
chr1 89886714 rs6428538 A G . PASS 0.9213000 0.9236000 0.7282000 0.8887000 0.8517000 0.8626000 37.0 69.54 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 89886796 rs6428539 G A . PASS 0.9213000 0.9236000 0.7282000 0.8887000 0.8517000 0.8626000 36.54 68.96 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 89887094 rs6665989 A C . PASS 0.9213000 0.9236000 0.7282000 0.8887000 0.8517000 0.8626000 36.5 70.0 24 950.84 0.00 100.00 0 100.00 1/1
chr1 89888371 rs6428540 A G . PASS 0.9213000 0.9236000 0.7262000 0.8887000 0.8517000 0.8622000 37.0 69.38 13 507.53 0.00 100.00 0 100.00 1/1
chr1 89888530 rs4261099 C T . PASS 0.9206000 0.9236000 0.7282000 0.8887000 0.8517000 0.8624000 36.84 64.57 81 1000.00 0.45 95.06 0 95.06 1/1
chr1 89888552 rs4282800 T A . PASS 0.9191000 0.9236000 0.7282000 0.8887000 0.8517000 0.8620000 36.66 65.11 76 1000.00 1.59 93.42 0 93.42 1/1
chr1 89888585 rs4415545 C G . PASS 0.9213000 0.9236000 0.7282000 0.8887000 0.8517000 0.8626000 36.27 66.48 67 1000.00 1.54 98.51 0 98.51 1/1
chr1 89888588 rs4506445 G T . PASS 0.9213000 0.9236000 0.7282000 0.8887000 0.8517000 0.8626000 36.65 66.74 70 1000.00 0.00 97.14 0 97.14 1/1
chr1 89935101 rs6692501 A G . PASS 0.5582000 0.6513000 0.5546000 0.6153000 0.5256000 0.5755000 37.0 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 90178743 rs474536 A G . PASS 0.9523000 0.9899000 1.0000000 1.0000000 1.0000000 0.9860000 36.5 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 90282382 rs3033163,rs112014894 G GCCCCT . PASS 0.6702000 0.5274000 0.6151000 0.4006000 0.3415000 0.5210000 36.36 70.0 47 534.34 6.38 38.30 0 38.30 0/1
chr1 90459744 rs2703984 A G . PASS 0.9274000 0.9841000 0.9732000 0.9692000 0.9642000 0.9601000 36.51 69.96 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 90486412 rs2816881 T G . PASS 0.6626000 0.7205000 0.8909000 0.5736000 0.6339000 0.6931000 35.86 70.0 54 654.00 1.06 38.89 0 38.89 0/1
chr1 90493026 rs10922744 G A . PASS 0.4667000 0.7032000 0.8899000 0.5706000 0.6022000 0.6320000 36.43 70.0 84 1000.00 0.00 50.00 0 50.00 0/1
chr1 90601007 rs6662919 A G . PASS 0.2579000 0.2363000 0.0565000 0.3509000 0.2137000 0.2244000 37.0 70.0 15 256.55 1.67 53.33 0 53.33 0/1
chr1 90601132 rs4466641 A T . PASS 0.5197000 0.6095000 0.3294000 0.6501000 0.4898000 0.5142000 36.49 70.0 94 1000.00 0.00 100.00 0 100.00 1/1
chr1 91280217 . AAC ACA . PASS . . . . . . 36.78 70.0 28 1000.00 2.65 96.43 0 96.43 1/1
chr1 91280290 rs2030860 T A . PASS 0.0794000 0.4625000 0.3294000 0.5487000 0.4560000 0.3506000 36.62 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 91359217 rs1188913 A G . PASS 1.0000000 0.9957000 1.0000000 0.9881000 0.9969000 0.9964000 37.0 68.72 18 716.39 0.00 100.00 0 100.00 1/1
chr1 91447985 rs358691 C T . PASS 0.9977000 0.9380000 1.0000000 0.8936000 0.9233000 0.9545000 37.0 70.0 23 925.24 0.00 100.00 0 100.00 1/1
chr1 91605491 rs347004 G A . PASS 0.5454000 0.4914000 0.5466000 0.5706000 0.6708000 0.5677000 36.69 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 91727781 rs580070 C G . PASS 0.1392000 0.1427000 0.0050000 0.2058000 0.1155000 0.1214000 36.56 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 91728053 rs585898 G A . PASS 0.9970000 1.0000000 1.0000000 1.0000000 1.0000000 0.9992000 36.21 69.67 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 91728202 rs555432 T C . PASS 0.9970000 1.0000000 1.0000000 1.0000000 1.0000000 0.9992000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 91739208 rs281964 C T . PASS 0.9970000 1.0000000 1.0000000 1.0000000 1.0000000 0.9992000 37.0 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 91739414 rs281963 G A . PASS 0.9970000 1.0000000 1.0000000 1.0000000 1.0000000 0.9992000 35.91 70.0 11 411.98 0.00 100.00 0 100.00 1/1
chr1 91781304 rs281991 T C . PASS 0.9970000 1.0000000 1.0000000 1.0000000 1.0000000 0.9992000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 91781644 rs11589490 C G . PASS 0.1233000 0.1571000 0.0050000 0.2346000 0.1155000 0.1250000 36.4 70.0 20 783.76 0.00 100.00 0 100.00 1/1
chr1 91782031 rs11584478 T C . PASS 0.1233000 0.1571000 0.0050000 0.2346000 0.1155000 0.1250000 36.23 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 91784887 rs10493845 G A . PASS 0.2481000 0.2781000 0.1756000 0.3072000 0.1810000 0.2364000 37.0 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 91793877 rs281972 T C . PASS 0.9970000 1.0000000 1.0000000 1.0000000 1.0000000 0.9992000 37.0 69.41 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 91841301 rs282036 T C . PASS 0.9970000 1.0000000 1.0000000 1.0000000 1.0000000 0.9992000 36.52 70.0 25 996.76 0.00 100.00 0 100.00 1/1
chr1 91851253 rs282026 T C . PASS 0.9970000 1.0000000 1.0000000 1.0000000 1.0000000 0.9992000 36.88 69.79 96 1000.00 0.00 100.00 0 100.00 1/1
chr1 91859795 rs282009 T C . PASS 0.9970000 1.0000000 1.0000000 1.0000000 1.0000000 0.9992000 37.0 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 91859801 rs11165778 A G . PASS 0.1649000 0.1585000 0.0050000 0.2356000 0.1176000 0.1368000 35.7 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 91923764 rs35310771 T C . PASS 0.5144000 0.4251000 0.3760000 0.4245000 0.4151000 0.4367000 36.82 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 91973557 rs553606 T G . PASS 0.9970000 1.0000000 1.0000000 1.0000000 1.0000000 0.9992000 34.82 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 91980447 rs483532 A G . PASS 0.7837000 0.7824000 0.7579000 0.7942000 0.7249000 0.7690000 37.0 70.0 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 91989572 rs488126 T G . PASS 0.9569000 0.9986000 1.0000000 1.0000000 1.0000000 0.9884000 37.0 70.0 12 461.62 0.00 100.00 0 100.00 1/1
chr1 92108899 rs2493202 C T . PASS 0.6959000 0.8660000 0.9643000 0.7157000 0.9192000 0.8211000 35.67 70.0 31 602.08 5.02 58.06 0 58.06 0/1
chr1 92174260 rs284878 A G . PASS 0.9418000 0.9712000 0.7351000 0.9433000 0.9530000 0.9067000 35.83 70.0 92 1000.00 0.00 100.00 0 100.00 1/1
chr1 92184814 rs7524066 G T . PASS 0.4145000 0.1599000 0.0625000 0.2883000 0.1288000 0.2272000 36.29 70.0 33 562.14 13.90 51.52 0 51.52 0/1
chr1 92185657 rs1805112 C T . PASS 0.2814000 0.2824000 0.5308000 0.4592000 0.4796000 0.4062000 36.72 70.0 93 1000.00 12.00 46.24 0 46.24 0/1
chr1 92200593 rs11165376 A G . PASS 0.4077000 0.6700000 0.5784000 0.6978000 0.8170000 0.6166000 37.0 70.0 24 521.85 8.33 62.50 0 62.50 0/1
chr1 92200597 rs12124904 G A . PASS 0.5537000 0.3213000 0.4216000 0.3022000 0.1830000 0.3720000 35.0 70.0 20 145.94 26.67 30.00 0 30.00 0/1
chr1 92200627 rs10874913 T C . PASS 0.6082000 0.9640000 0.9960000 0.9990000 1.0000000 0.8906000 37.0 70.0 15 591.07 0.00 100.00 0 100.00 1/1
chr1 92224347 rs11165441 G A . PASS 0.1377000 0.1671000 0.2907000 0.1352000 0.0450000 0.1540000 37.0 70.0 15 256.54 8.33 53.33 0 53.33 0/1
chr1 92262874 rs2810904 T C . PASS 0.7761000 0.7176000 0.7748000 0.6322000 0.6554000 0.7153000 36.22 69.57 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 92281585 rs10783036 A T . PASS 0.5265000 0.5663000 0.4226000 0.5417000 0.5706000 0.5228000 35.94 70.0 68 1000.00 0.00 100.00 0 100.00 1/1
chr1 92281635 rs10783037 T C . PASS 0.5272000 0.5663000 0.4226000 0.5417000 0.5706000 0.5230000 36.74 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 92428495 rs10783071 C A . PASS 0.6551000 0.8415000 0.6141000 0.9235000 0.8057000 0.7560000 36.16 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 92445257 rs3088232 C G . PASS 0.0242000 0.2392000 0.0278000 0.2167000 0.2137000 0.1304000 37.0 70.0 57 794.30 0.44 42.11 0 42.11 0/1
chr1 92446398 rs2303967 T A . PASS 0.4970000 0.7291000 0.6081000 0.7952000 0.7536000 0.6615000 37.0 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 92446961 rs35241748,rs148496128 T TTGTA . PASS 0.1271000 0.2493000 0.0288000 0.2237000 0.2096000 0.1597000 36.83 70.0 60 1000.00 10.00 60.00 0 60.00 0/1
chr1 92447004 rs10875104 A G . PASS 0.6051000 0.7781000 0.6111000 0.8459000 0.7945000 0.7157000 35.83 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 92457843 rs10747493 C T . PASS 0.5908000 0.7738000 0.6081000 0.8429000 0.7945000 0.7101000 36.04 70.0 25 984.75 0.00 100.00 0 100.00 1/1
chr1 92509766 rs1023039 A G . PASS 0.6967000 0.5231000 0.4435000 0.4414000 0.4632000 0.5248000 36.71 70.0 66 1000.00 0.00 63.64 0 63.64 0/1
chr1 92509854 rs1023038 C T . PASS 0.1725000 0.2622000 0.0238000 0.2336000 0.2055000 0.1737000 36.33 70.0 37 596.03 14.41 48.65 0 48.65 0/1
chr1 92540650 . A C . PASS . . . . . . 37.0 60.6 111 464.71 7.30 18.02 0 18.02 0/1
chr1 92540686 . C A . PASS . . . . . . 37.0 59.81 135 643.08 17.61 19.26 0 19.26 0/1
chr1 92568263 rs527412 A G . PASS 0.7814000 0.6628000 0.9732000 0.6561000 0.7812000 0.7784000 37.0 70.0 23 232.47 19.57 34.78 0 34.78 0/1
chr1 92573670 rs11166163 G A . PASS 0.0514000 0.2853000 0.1548000 0.2942000 0.3170000 0.2053000 37.0 70.0 10 146.28 20.00 50.00 0 50.00 0/1
chr1 92591916 rs3851272 G A . PASS 0.6490000 0.6412000 0.9692000 0.6282000 0.7403000 0.7260000 35.8 70.0 16 325.06 5.00 62.50 0 62.50 0/1
chr1 92592063 rs35716168 CT CGTA . PASS . . . . . . . . 15 288.74 4.44 60.00 1 60.00 0/1
chr1 92592064 rs201384700 T A . PASS . . . . . . 35.8 70.0 13 329.95 3.08 76.92 1 76.92 0/1
chr1 92646021 rs1483022 G A . PASS 0.6059000 0.6066000 0.9732000 0.6223000 0.7474000 0.7109000 36.37 70.0 86 1000.00 1.10 44.19 0 44.19 0/1
chr1 92647223 rs560389 A G . PASS 0.9713000 0.6614000 0.9752000 0.6779000 0.7720000 0.8313000 35.0 70.0 27 363.49 5.56 44.44 0 44.44 0/1
chr1 92647532 rs565156 C A . PASS 0.9992000 0.9899000 1.0000000 0.9861000 1.0000000 0.9956000 35.54 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 92711067 rs3131827 A T . PASS 0.4766000 0.4885000 0.9732000 0.4553000 0.7168000 0.6208000 37.0 70.0 12 261.42 25.00 66.67 0 66.67 0/1
chr1 92712266 rs974924 C T . PASS 0.9871000 0.9986000 1.0000000 1.0000000 1.0000000 0.9964000 36.08 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 92712598 rs35752451 GAA G . PASS 0.4705000 0.4870000 0.9732000 0.4553000 0.7157000 0.6188000 35.96 70.0 46 729.48 0.00 50.00 0 50.00 0/1
chr1 92735359 rs1487540 T C . PASS 0.4720000 0.4885000 0.9732000 0.4553000 0.7178000 0.6198000 36.0 70.0 13 418.68 10.26 92.31 0 92.31 0/1
chr1 92755943 rs3103178 G A . PASS 0.8480000 0.5389000 0.9732000 0.4712000 0.7290000 0.7314000 37.0 70.0 10 62.74 20.00 30.00 0 30.00 0/1
chr1 92765848 rs1542685 A T . PASS 0.4720000 0.4885000 0.9732000 0.4553000 0.7168000 0.6196000 37.0 70.0 48 737.86 19.70 45.83 0 45.83 0/1
chr1 92799151 rs1487537 C T . PASS 0.9773000 0.8876000 0.9980000 0.8062000 0.9622000 0.9317000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 92852504 rs10747411 A G . PASS 0.9766000 0.8876000 0.9980000 0.8062000 0.9622000 0.9315000 37.0 70.0 16 632.84 0.00 100.00 0 100.00 1/1
chr1 92944314 rs200902533 CAGAGAG C . PASS . . . . . . 33.56 70.0 51 494.29 19.61 35.29 0 37.25 0/1
chr1 92946479 rs11164605 G A . PASS 0.9440000 0.8890000 0.9752000 0.8091000 0.9611000 0.9189000 36.0 69.67 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 92979354 rs6603979 A G . PASS 0.9508000 0.8905000 0.9752000 0.8072000 0.9601000 0.9203000 36.44 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 93073228 rs11808092 C A . PASS 0.0696000 0.1873000 0.0159000 0.2744000 0.1063000 0.1234000 35.8 70.0 43 645.35 3.02 46.51 0 46.51 0/1
chr1 93089823 rs7514716 T C . PASS 0.9554000 0.9395000 0.9752000 0.9026000 0.9683000 0.9491000 36.28 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 93128854 rs10747450 A G . PASS 0.9561000 0.9452000 0.9752000 0.9046000 0.9683000 0.9505000 36.14 70.0 14 537.29 0.00 100.00 0 100.00 1/1
chr1 93130042 rs59296856,rs10683175 T TAAA . PASS 0.4849000 0.4380000 0.5218000 0.4046000 0.4918000 0.4710000 37.0 70.0 11 408.41 29.09 45.45 0 100.00 0/1
chr1 93130042 rs59296856 T TAA . PASS . . . . . . 37.0 70.0 11 408.41 10.91 45.45 0 100.00 0/1
chr1 93160002 rs34202284 G A . PASS 0.0862000 0.1931000 0.0317000 0.2744000 0.1207000 0.1346000 37.0 70.0 13 304.33 20.51 69.23 0 69.23 0/1
chr1 93160902 rs2391199 T C . PASS 0.9546000 0.9452000 0.9752000 0.9056000 0.9683000 0.9503000 36.13 70.0 55 1000.00 0.00 100.00 0 100.00 1/1
chr1 93163385 rs7418336 A G . PASS 0.5537000 0.7075000 0.9296000 0.6203000 0.7843000 0.7091000 34.6 70.0 28 473.78 7.62 53.57 0 53.57 0/1
chr1 93163633 rs1017008 C T . PASS 0.9546000 0.9452000 0.9752000 0.9056000 0.9683000 0.9503000 37.0 70.0 21 841.70 0.00 100.00 0 100.00 1/1
chr1 93167854 rs10218670 A G . PASS 0.9546000 0.9452000 0.9752000 0.9046000 0.9683000 0.9501000 36.29 70.0 17 662.60 0.00 100.00 0 100.00 1/1
chr1 93426866 rs945629 T C . PASS 0.9796000 0.9971000 1.0000000 1.0000000 1.0000000 0.9942000 36.54 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 93426869 rs1415069 G C . PASS 0.7489000 0.7882000 0.7639000 0.8270000 0.7618000 0.7756000 36.5 70.0 24 950.84 0.00 100.00 0 100.00 1/1
chr1 93545157 rs2815419 G A . PASS 0.3812000 0.8761000 0.9335000 0.9175000 0.9254000 0.7750000 35.96 70.0 23 901.21 0.00 100.00 0 100.00 1/1
chr1 93580581 rs2815427 G C . PASS 0.9970000 1.0000000 1.0000000 1.0000000 1.0000000 0.9992000 36.51 69.73 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 93580992 rs566843 C T . PASS 0.1626000 0.7781000 0.9365000 0.7425000 0.9080000 0.6657000 36.48 70.0 23 913.22 0.00 100.00 0 100.00 1/1
chr1 93581024 rs2295423 T C . PASS 0.0915000 0.5893000 0.6409000 0.6322000 0.6953000 0.4976000 35.7 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 93602194 rs2281524 C T . PASS 0.9629000 0.8213000 0.7024000 0.9135000 0.7883000 0.8468000 37.0 70.0 15 591.07 0.00 100.00 0 100.00 1/1
chr1 93620393 rs1060622 G A . PASS 0.0696000 0.5836000 0.6438000 0.6302000 0.6912000 0.4904000 36.22 70.0 77 1000.00 0.00 100.00 0 100.00 1/1
chr1 93621483 rs1057257 A G . PASS 0.1346000 0.6023000 0.6448000 0.6551000 0.6963000 0.5164000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 93649732 rs6682670 A G . PASS 0.1339000 0.6023000 0.6448000 0.6541000 0.6953000 0.5158000 36.37 70.0 19 746.14 0.00 100.00 0 100.00 1/1
chr1 93656588 rs7541687 A G . PASS 0.1339000 0.6023000 0.6448000 0.6541000 0.6953000 0.5158000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 93659350 rs2815411 A T . PASS 0.7844000 0.8862000 1.0000000 0.8091000 0.9806000 0.8852000 36.54 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 93672723 rs2815413 A C . PASS 0.3313000 0.8415000 0.9623000 0.8052000 0.9652000 0.7480000 36.62 70.0 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 93676314 rs555161 A G . PASS 0.1339000 0.6023000 0.6448000 0.6541000 0.6953000 0.5158000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 93676578 rs797676 A G . PASS 0.0620000 0.5850000 0.6448000 0.6352000 0.6912000 0.4898000 37.0 70.0 20 799.93 0.00 100.00 0 100.00 1/1
chr1 93711782 rs3754186 T A . PASS 0.0212000 0.5274000 0.6429000 0.5408000 0.6431000 0.4423000 37.0 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 93850283 rs12133907 C A . PASS 0.1339000 0.5692000 0.6369000 0.6173000 0.6513000 0.4936000 36.08 70.0 13 491.37 0.00 100.00 0 100.00 1/1
chr1 93998640 rs34814765 AT A . PASS . . . . . . 35.56 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 94040287 rs67043929 T C . PASS 0.1460000 0.1340000 0.0010000 0.1918000 0.0419000 0.1040000 35.59 70.0 44 521.17 11.23 38.64 0 38.64 0/1
chr1 94041787 rs25569 G GAC . PASS 0.9909000 0.8040000 0.9980000 0.8698000 0.9090000 0.9261000 37.0 70.0 16 308.48 10.00 62.50 0 62.50 0/1
chr1 94048485 rs12760294 C G . PASS 0.0008000 0.0130000 0.0000000 0.0239000 0.0041000 0.0075879 36.67 70.0 81 1000.00 3.09 44.44 0 44.44 0/1
chr1 94310694 rs2391315 G C . PASS 0.5484000 0.4366000 0.5883000 0.4374000 0.6309000 0.5347000 36.29 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 94315977 rs2103784 G C . PASS 0.5484000 0.4380000 0.6200000 0.4374000 0.6309000 0.5413000 37.0 69.18 11 419.85 0.00 100.00 0 100.00 1/1
chr1 94341137 rs2273166 C T . PASS 0.2579000 0.3934000 0.6190000 0.3976000 0.6115000 0.4465000 36.0 70.0 12 453.75 0.00 100.00 0 100.00 1/1
chr1 94341267 rs2273165 A G . PASS 0.5378000 0.4337000 0.6210000 0.4225000 0.6237000 0.5337000 36.73 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 94342061 rs41292661 C T . PASS 0.0015000 0.0173000 0.0000000 0.0368000 0.0061000 0.0113820 36.56 70.0 62 896.70 15.65 43.55 0 43.55 0/1
chr1 94342564 rs3747965 C A . PASS 0.0817000 0.3300000 0.5565000 0.3250000 0.5133000 0.3448000 36.28 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 94343023 rs2391322 A G . PASS 0.3782000 0.3718000 0.5585000 0.3499000 0.5266000 0.4369000 37.0 70.0 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 94343233 rs3789457 T C . PASS 0.8094000 0.8069000 0.7857000 0.6620000 0.7301000 0.7592000 36.73 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 94344716 rs2235971 C T . PASS 0.0930000 0.3329000 0.5565000 0.3250000 0.5133000 0.3482000 36.18 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 94463366 rs7518454 G C . PASS 0.2360000 0.0432000 0.0952000 0.0646000 0.0777000 0.1156000 36.04 70.0 45 848.18 0.89 55.56 0 55.56 0/1
chr1 94466659 rs1801555 A G . PASS 0.7330000 0.1297000 0.1567000 0.1193000 0.1748000 0.3011000 36.65 70.0 140 1000.00 6.13 48.57 0 48.57 0/1
chr1 94471075 rs1762114 A G . PASS 0.3744000 0.9006000 0.8968000 0.9394000 0.9070000 0.7700000 35.21 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 94471154 rs4147863 C T . PASS 0.1536000 0.1282000 0.1210000 0.1789000 0.1145000 0.1410000 36.25 70.0 18 569.67 6.94 88.89 0 88.89 0/1
chr1 94473845 rs2275029 T C . PASS 0.2640000 0.1585000 0.1200000 0.1441000 0.1145000 0.1671000 36.43 70.0 71 1000.00 0.34 59.15 0 59.15 0/1
chr1 94473864 rs1800739 C T . PASS 0.2837000 0.1801000 0.1210000 0.1829000 0.1145000 0.1833000 36.33 70.0 59 1000.00 1.41 61.02 0 61.02 0/1
chr1 94473896 rs2275031 G T . PASS 0.2655000 0.1758000 0.1210000 0.1839000 0.1145000 0.1781000 36.4 70.0 35 681.43 7.14 57.14 0 57.14 0/1
chr1 94474185 rs2275032 A C . PASS 0.2640000 0.1758000 0.1210000 0.1829000 0.1145000 0.1775000 37.0 70.0 15 210.62 13.33 46.67 0 46.67 0/1
chr1 94474328 rs4147857 T C . PASS 0.2678000 0.2320000 0.1210000 0.1879000 0.1155000 0.1875000 36.51 70.0 81 1000.00 4.99 60.49 0 60.49 0/1
chr1 94474452 rs4147856 T G . PASS 0.2685000 0.2320000 0.1210000 0.1879000 0.1155000 0.1877000 36.14 70.0 24 463.92 3.57 58.33 0 58.33 0/1
chr1 94476388 rs1801574 C G . PASS 0.2738000 0.2075000 0.1200000 0.2495000 0.1299000 0.2007000 36.68 70.0 75 1000.00 11.86 50.67 0 50.67 0/1
chr1 94476555 rs537831 G A . PASS 0.4470000 0.7450000 0.8194000 0.7097000 0.8333000 0.6915000 37.0 70.0 11 226.81 7.79 63.64 0 63.64 0/1
chr1 94476695 rs2065711 C T . PASS 0.2738000 0.2061000 0.1200000 0.2495000 0.1288000 0.2003000 37.0 70.0 12 140.26 46.67 41.67 0 41.67 0/1
chr1 94476991 rs4147899 CT C . PASS 0.2731000 0.2061000 0.1200000 0.2495000 0.1227000 0.1989000 36.45 70.0 109 1000.00 3.59 61.47 0 61.47 0/1
chr1 94480037 rs2275033 C T . PASS 0.4039000 0.2738000 0.1399000 0.4374000 0.3405000 0.3271000 36.08 68.46 26 420.27 23.08 50.00 0 50.00 0/1
chr1 94487354 rs472908 G A . PASS 0.7648000 0.5692000 0.4633000 0.5586000 0.5256000 0.5889000 37.0 70.0 42 968.91 10.58 64.29 0 64.29 0/1
chr1 94495930 rs547806 T C . PASS 0.9561000 1.0000000 0.9990000 1.0000000 1.0000000 0.9882000 37.0 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 94512565 rs1801581 C T . PASS 0.0023000 0.0086000 0.0000000 0.0368000 0.0317000 0.0153750 36.76 70.0 109 1000.00 5.47 46.79 0 46.79 0/1
chr1 94526044 rs56197337 A G . PASS 0.0756000 0.0706000 0.0298000 0.0408000 0.0532000 0.0543000 36.33 70.0 30 617.09 4.44 60.00 0 60.00 0/1
chr1 94528363 rs4147833 C T . PASS 0.1770000 0.2810000 0.7758000 0.2406000 0.4274000 0.3736000 35.0 68.33 27 363.49 9.26 44.44 0 44.44 0/1
chr1 94544135 rs4147887 A AC . PASS . . . . . . 35.84 68.06 53 967.75 10.54 54.72 0 54.72 0/1
chr1 94544276 rs4147830 G A . PASS 0.5000000 0.4914000 0.5992000 0.4801000 0.5000000 0.5148000 37.0 66.0 33 285.90 18.79 30.30 0 30.30 0/1
chr1 94544326 rs3215952 GT G . PASS 0.5008000 0.4914000 0.5982000 0.4801000 0.5010000 0.5150000 37.0 65.0 15 79.90 40.00 26.67 0 26.67 0/1
chr1 94574053 rs11165073 C A . PASS 0.4501000 0.6052000 0.6528000 0.4692000 0.5859000 0.5427000 37.0 70.0 13 341.95 4.62 76.92 0 76.92 0/1
chr1 94576893 rs2297635 G A . PASS 0.3480000 0.1484000 0.2609000 0.0964000 0.1892000 0.2212000 37.0 70.0 34 575.29 0.00 50.00 0 50.00 0/1
chr1 94576968 rs2297634 T C . PASS 0.4599000 0.6081000 0.6528000 0.4742000 0.5869000 0.5469000 36.4 70.0 76 1000.00 1.84 52.63 0 52.63 0/1
chr1 94578548 rs4847281 T C . PASS 0.9531000 0.9957000 1.0000000 1.0000000 1.0000000 0.9870000 36.45 70.0 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 94639337 rs1330858 A G . PASS 0.8986000 0.9928000 1.0000000 0.9990000 1.0000000 0.9720000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 94639447 rs1999272 C T . PASS 0.7980000 0.9827000 1.0000000 0.9980000 1.0000000 0.9439000 36.19 70.0 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 94667430 rs5776210 G GA . PASS 0.7973000 0.9798000 0.9950000 0.9891000 0.9796000 0.9365000 36.14 70.0 14 521.70 0.00 100.00 0 100.00 1/1
chr1 94668046 rs1541099 C T . PASS 0.7579000 0.9798000 0.9990000 0.9970000 0.9959000 0.9317000 37.0 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 94674723 rs6684237 G A . PASS 0.8986000 0.9928000 1.0000000 0.9990000 1.0000000 0.9720000 37.0 70.0 23 925.24 0.00 100.00 0 100.00 1/1
chr1 94674726 rs2274788 T C . PASS 0.0325000 0.2421000 0.3135000 0.2435000 0.1524000 0.1839000 37.0 70.0 23 399.54 1.45 52.17 0 52.17 0/1
chr1 94930345 rs16946 G A . PASS 0.0998000 0.3919000 0.1994000 0.5020000 0.2986000 0.2800000 36.39 69.66 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 94938010 rs4148072 GT G . PASS 0.5113000 0.6254000 0.3968000 0.5666000 0.4755000 0.5082000 34.67 70.0 25 859.63 4.00 96.00 0 96.00 1/1
chr1 94980671 rs3118109 C G . PASS 0.9410000 0.9942000 1.0000000 1.0000000 1.0000000 0.9836000 37.0 70.0 23 921.09 0.00 100.00 0 100.00 1/1
chr1 95001600 rs698946 A C . PASS 0.9365000 0.9957000 1.0000000 1.0000000 1.0000000 0.9826000 36.71 70.0 82 1000.00 0.00 100.00 0 100.00 1/1
chr1 95284222 rs3860348 C T . PASS 0.8480000 0.9827000 0.9921000 1.0000000 0.9928000 0.9545000 34.78 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 95284230 rs3890118 T C . PASS 0.3525000 0.4798000 0.3591000 0.4294000 0.5010000 0.4159000 37.0 70.0 28 259.19 18.25 32.14 0 32.14 0/1
chr1 95285897 . C A . PASS . . . . . . 34.0 70.0 15 73.30 3.33 26.67 0 26.67 0/1
chr1 95286085 rs11165252 G A . PASS 0.3654000 0.3890000 0.5982000 0.4125000 0.2945000 0.4111000 37.0 70.0 44 628.73 2.39 43.18 0 43.18 0/1
chr1 95286094 rs10782992 G T . PASS 0.8495000 0.9827000 0.9921000 0.9990000 0.9928000 0.9547000 36.0 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 95286658 rs6676991 C A . PASS 0.5318000 0.5980000 0.3938000 0.5895000 0.6963000 0.5569000 35.67 70.0 33 591.91 12.12 54.55 0 54.55 0/1
chr1 95286675 rs11274910,rs58644340 GTCCCAAATGTAAA G . PASS 0.5310000 0.5980000 0.3938000 0.5895000 0.6963000 0.5567000 35.62 70.0 22 410.73 18.88 59.09 0 59.09 0/1
chr1 95290003 rs6687749 C T . PASS 0.5325000 0.5980000 0.3929000 0.5905000 0.6963000 0.5571000 36.4 70.0 33 691.60 0.61 60.61 0 60.61 0/1
chr1 95290305 rs6541372 T C . PASS 0.8396000 0.9827000 0.9921000 1.0000000 0.9908000 0.9519000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 95290315 rs36094793 A G . PASS 0.2663000 0.3833000 0.5982000 0.4095000 0.2955000 0.3838000 37.0 70.0 13 137.25 0.00 38.46 0 38.46 0/1
chr1 95305440 rs859120 A G . PASS 0.5129000 0.5187000 0.7044000 0.5716000 0.5266000 0.5667000 37.0 70.0 18 122.20 4.44 27.78 0 27.78 0/1
chr1 95332864 rs12137650 C T . PASS 0.2231000 0.3357000 0.1508000 0.3151000 0.1452000 0.2274000 37.0 70.0 75 1000.00 8.82 52.00 0 52.00 0/1
chr1 95333068 rs859096 G T . PASS 0.3396000 0.6441000 0.7500000 0.7227000 0.7065000 0.6130000 36.48 70.0 23 909.07 0.00 100.00 0 100.00 1/1
chr1 95358096 rs859063 A G . PASS 0.3253000 0.5144000 0.4157000 0.6014000 0.4663000 0.4527000 36.25 70.0 16 620.83 0.00 100.00 0 100.00 1/1
chr1 95367136 rs859059 G A . PASS 0.9728000 0.9928000 1.0000000 0.9990000 1.0000000 0.9916000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 95367649 rs859058 T C . PASS 0.2784000 0.5130000 0.4196000 0.6034000 0.4652000 0.4411000 36.74 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 95607756 rs7526279 A G . PASS 0.9251000 0.9928000 1.0000000 1.0000000 1.0000000 0.9792000 34.78 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 95614443 rs72722133 T A . PASS 0.0000000 0.0000000 0.0000000 0.0080000 0.0000000 0.0015974 37.0 70.0 11 180.90 15.15 54.55 0 54.55 0/1
chr1 95699978 rs147737137 A G . PASS 0.0008000 0.0216000 0.0020000 0.0268000 0.0501000 0.0187700 35.29 70.0 17 477.13 10.08 82.35 0 82.35 0/1
chr1 95709821 rs259358 T C . PASS 0.9440000 0.9957000 1.0000000 1.0000000 1.0000000 0.9846000 36.66 70.0 107 1000.00 0.00 100.00 0 100.00 1/1
chr1 95709939 rs2296308 T G . PASS 0.6823000 0.8487000 0.8036000 0.8728000 0.9346000 0.8173000 36.51 70.0 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 96272062 rs11589942 G T . PASS 0.1558000 0.2824000 0.2907000 0.2068000 0.2454000 0.2282000 36.33 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 96272249 rs67532720 A G . PASS 0.2912000 0.3012000 0.2966000 0.2227000 0.2945000 0.2806000 37.0 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 96610271 rs12567412 T C . PASS 0.0930000 0.5807000 0.6359000 0.3797000 0.3609000 0.3798000 36.66 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 96884330 rs17115225 C T . PASS 0.4871000 0.2767000 0.2083000 0.3231000 0.4274000 0.3572000 37.0 69.83 18 716.39 0.00 100.00 0 100.00 1/1
chr1 96914049 rs1931180 C T . PASS 0.5545000 0.3473000 0.3165000 0.4215000 0.6411000 0.4681000 35.6 69.77 35 1000.00 3.03 97.14 0 100.00 1/1
chr1 97145162 rs61759529 T G . PASS 0.0098000 0.0519000 0.1677000 0.1233000 0.0900000 0.0859000 35.5 69.5 14 243.39 28.57 57.14 0 57.14 0/1
chr1 97189091 rs3762411 G A . PASS 0.7352000 0.5490000 0.6339000 0.5368000 0.6462000 0.6318000 31.92 70.0 53 761.94 2.18 49.06 0 49.06 0/1
chr1 97272456 rs6699932 A G . PASS 0.5408000 0.1499000 0.2103000 0.2117000 0.1513000 0.2780000 35.86 70.0 43 691.27 2.21 48.84 0 48.84 0/1
chr1 97278804 rs273886 G A . PASS 0.7345000 0.5490000 0.6339000 0.5358000 0.6442000 0.6310000 36.33 70.0 37 596.02 8.71 48.65 0 48.65 0/1
chr1 97284839 rs603231 G C . PASS 0.6649000 0.4597000 0.6369000 0.3579000 0.6247000 0.5613000 37.0 69.05 50 690.06 12.76 42.00 0 42.00 0/1
chr1 97544771 rs290855 T C . PASS 0.6687000 0.8545000 0.9950000 0.8260000 0.8947000 0.8359000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 97547831 rs290854 G A . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 35.96 70.0 23 901.21 0.00 100.00 0 100.00 1/1
chr1 97594060 rs4950021 G T . PASS 0.6868000 0.4251000 0.3363000 0.5447000 0.3875000 0.4930000 35.29 70.0 11 210.65 5.19 63.64 0 63.64 0/1
chr1 97771947 rs7556439 C A . PASS 0.0340000 0.3963000 0.3145000 0.3161000 0.3262000 0.2544000 37.0 70.0 13 503.38 0.00 100.00 0 100.00 1/1
chr1 97839016 rs1890138 A G . PASS 0.2489000 0.2507000 0.3948000 0.2356000 0.4663000 0.3183000 37.0 70.0 18 331.06 13.33 55.56 0 55.56 0/1
chr1 97847874 rs72728438 T C . PASS 0.1611000 0.1383000 0.2202000 0.1968000 0.4151000 0.2266000 37.0 70.0 14 176.01 28.57 42.86 0 42.86 0/1
chr1 97951926 rs10747483 T C . PASS 0.6165000 0.6153000 0.7302000 0.6252000 0.6227000 0.6422000 37.0 70.0 39 518.47 5.45 41.03 0 41.03 0/1
chr1 97981241 . ATG ACA . PASS . . . . . . 36.4 70.0 18 280.28 8.89 55.56 0 55.56 0/1
chr1 97981395 rs1801159 T C . PASS 0.1536000 0.2666000 0.2659000 0.1879000 0.0828000 0.1849000 35.86 70.0 83 1000.00 1.15 50.60 0 50.60 0/1
chr1 97981421 rs1801158 C T . PASS 0.0023000 0.0130000 0.0000000 0.0308000 0.0051000 0.0095847 36.4 70.0 81 1000.00 1.23 49.38 0 49.38 0/1
chr1 98348885 rs1801265 G A . PASS 0.5582000 0.7752000 0.9137000 0.7853000 0.7342000 0.7398000 36.83 69.71 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 98615074 rs355361 G C . PASS 0.4682000 0.3588000 0.4940000 0.5239000 0.5440000 0.4842000 36.54 70.0 60 856.80 0.00 43.33 0 43.33 0/1
chr1 98903864 rs11166014 T C . PASS 0.5885000 0.4409000 0.3393000 0.5865000 0.4928000 0.4988000 36.84 70.0 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 99127205 rs12723363 A G . PASS 0.6346000 0.9683000 0.8948000 0.9751000 0.9601000 0.8652000 36.29 70.0 17 662.60 0.00 100.00 0 100.00 1/1
chr1 99127392 rs9728148 T C . PASS 0.9841000 0.9971000 1.0000000 1.0000000 1.0000000 0.9954000 37.0 70.0 69 1000.00 0.00 100.00 0 100.00 1/1
chr1 99150635 rs9433747 G A . PASS 0.6278000 0.9568000 0.8958000 0.9592000 0.9581000 0.8584000 36.33 70.0 18 704.37 0.00 100.00 0 100.00 1/1
chr1 99161184 rs35391040 C A . PASS 0.0000000 0.0014000 0.0000000 0.0080000 0.0041000 0.0025959 36.08 70.0 50 874.89 12.31 52.00 0 52.00 0/1
chr1 99164434 rs6577322 G A . PASS 0.2088000 0.2781000 0.0595000 0.2654000 0.3006000 0.2177000 36.56 69.85 41 959.91 3.61 65.85 0 65.85 0/1
chr1 99225627 rs2019213 G A . PASS 0.8661000 0.9078000 0.6657000 0.9871000 0.9663000 0.8754000 36.56 70.0 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 99278039 rs7536213 G T . PASS 0.4107000 0.4625000 0.6210000 0.3718000 0.3548000 0.4415000 34.6 70.0 32 63.91 1.25 15.62 0 15.62 0/1
chr1 99358542 rs55842403 C T . PASS 0.1241000 0.1037000 0.0575000 0.1968000 0.1022000 0.1182000 37.0 70.0 13 262.57 1.92 61.54 0 61.54 0/1
chr1 99418647 rs309087 G C . PASS 0.2738000 0.1571000 0.2351000 0.1789000 0.2342000 0.2230000 37.0 70.0 101 1000.00 2.74 51.49 0 51.49 0/1
chr1 99418911 . T TTGTG . PASS . . . . . . 36.31 70.0 14 360.27 11.69 78.57 0 78.57 0/1
chr1 99470269 rs12057990 T C . PASS 0.2088000 0.2032000 0.4365000 0.2406000 0.1851000 0.2556000 36.73 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 99969159 rs7517211 G C . PASS 0.3419000 0.4366000 0.4196000 0.5755000 0.5746000 0.4631000 36.29 70.0 68 1000.00 0.00 100.00 0 100.00 1/1
chr1 99969233 rs57287141 C CTT . PASS 0.5023000 0.3040000 0.1855000 0.4523000 0.3630000 0.3738000 35.74 70.0 35 961.40 26.67 60.00 0 77.14 0/1
chr1 99969250 . G T . PASS . . . . . . 34.0 70.0 21 55.25 133.33 19.05 0 19.05 0/1
chr1 100152443 rs1338576 T C . PASS 0.3487000 0.4755000 0.4722000 0.5348000 0.4264000 0.4437000 34.6 68.0 20 301.03 0.00 50.00 0 50.00 0/1
chr1 100277599 rs1565744 G A . PASS 0.5802000 0.5331000 0.6468000 0.4702000 0.5082000 0.5509000 35.67 70.0 43 565.96 10.59 41.86 0 41.86 0/1
chr1 100316589 rs2307130 A G . PASS 0.2231000 0.4726000 0.5198000 0.4573000 0.5440000 0.4271000 35.36 70.0 49 702.96 15.21 44.90 0 44.90 0/1
chr1 100316765 rs663848 C T . PASS 0.9342000 0.7032000 0.6835000 0.6750000 0.7444000 0.7626000 37.0 70.0 30 378.48 6.67 40.00 0 40.00 0/1
chr1 100329889 rs535461 G C . PASS 0.8797000 0.6844000 0.6835000 0.6471000 0.7423000 0.7396000 35.0 70.0 14 159.85 9.52 42.86 0 42.86 0/1
chr1 100336361 rs2230306 C T . PASS 0.9334000 0.7017000 0.6835000 0.6759000 0.7454000 0.7626000 37.0 70.0 35 655.82 1.50 54.29 0 54.29 0/1
chr1 100342227 rs3736295 C T . PASS 0.4191000 0.6095000 0.6796000 0.5348000 0.6094000 0.5583000 37.0 70.0 17 375.83 7.49 64.71 0 64.71 0/1
chr1 100343153 rs2291638 A G . PASS 0.0439000 0.3833000 0.4365000 0.3569000 0.3078000 0.2843000 37.0 70.0 15 131.23 13.33 33.33 0 33.33 0/1
chr1 100345409 rs2392077 C G . PASS 0.3623000 0.5879000 0.6796000 0.5089000 0.6063000 0.5345000 37.0 70.0 14 213.63 14.29 50.00 0 50.00 0/1
chr1 100346741 rs3736296 T C . PASS 0.4206000 0.6095000 0.6796000 0.5338000 0.6094000 0.5585000 36.27 70.0 47 1000.00 7.61 70.21 0 70.21 0/1
chr1 100353675 rs555929 G A . PASS 0.5855000 0.7075000 0.7073000 0.6889000 0.7566000 0.6811000 37.0 70.0 77 905.34 3.90 36.36 0 36.36 0/1
chr1 100357041 rs2035960 A G . PASS 0.4191000 0.6095000 0.6796000 0.5348000 0.6104000 0.5585000 34.0 70.0 11 89.49 9.09 36.36 0 36.36 0/1
chr1 100357141 rs2035961 T A . PASS 0.3616000 0.5879000 0.6796000 0.5089000 0.6063000 0.5343000 36.0 70.0 35 347.26 2.38 34.29 0 34.29 0/1
chr1 100358200 rs594249 G A . PASS 0.5855000 0.7075000 0.7073000 0.6899000 0.7577000 0.6815000 35.8 70.0 25 297.99 4.00 40.00 0 40.00 0/1
chr1 100376448 rs2274570 G A . PASS 0.3495000 0.5663000 0.5744000 0.5010000 0.3804000 0.4613000 35.4 70.0 23 500.84 11.59 65.22 0 65.22 0/1
chr1 100376456 rs1541041 T A . PASS 0.3487000 0.5663000 0.5694000 0.5000000 0.3804000 0.4599000 36.2 70.0 23 508.70 7.54 65.22 0 65.22 0/1
chr1 100533960 rs6687189 G A . PASS 0.0643000 0.5576000 0.5546000 0.3847000 0.2873000 0.3393000 37.0 70.0 21 841.70 0.00 100.00 0 100.00 1/1
chr1 100568759 rs544225 C G . PASS 0.7141000 0.6787000 0.6746000 0.5427000 0.5440000 0.6336000 37.0 70.0 11 419.85 0.00 100.00 0 100.00 1/1
chr1 100575933 rs13375867 G A . PASS 0.0658000 0.5562000 0.5813000 0.3867000 0.3129000 0.3502000 36.13 70.0 55 1000.00 0.00 100.00 0 100.00 1/1
chr1 100598865 rs35216047 CGC CAT . PASS . . . . . . 36.25 70.0 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 100617887 rs2784177 C T . PASS 0.7874000 0.9467000 0.9474000 0.9195000 0.9642000 0.9028000 36.25 70.0 16 620.83 0.00 100.00 0 100.00 1/1
chr1 100671866 rs34229137 T A . PASS 0.0772000 0.4251000 0.2500000 0.3877000 0.3119000 0.2684000 36.29 70.0 21 559.50 20.83 76.19 0 80.95 0/1
chr1 100672060 rs12021720 T C . PASS 0.7443000 0.9481000 0.9494000 0.9215000 0.9611000 0.8918000 36.61 70.0 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 100715454 rs3806235 G A . PASS 0.3222000 0.8660000 0.9216000 0.8598000 0.8282000 0.7250000 35.91 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 100750733 rs58046505 AGTTTT A . PASS . . . . . . 36.13 70.0 94 1000.00 0.00 100.00 0 100.00 1/1
chr1 100797449 rs614766 A T . PASS 0.9281000 0.4640000 0.4623000 0.5388000 0.5900000 0.6258000 35.67 70.0 18 688.21 0.00 100.00 0 100.00 1/1
chr1 100797473 rs614805 T C . PASS 0.9660000 0.4683000 0.4623000 0.5398000 0.5920000 0.6370000 37.0 70.0 22 883.47 0.00 100.00 0 100.00 1/1
chr1 100818464 rs594529 T C . PASS 1.0000000 0.9712000 0.9812000 0.9801000 0.9755000 0.9834000 37.0 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 100970346 rs10875295 T C . PASS 0.6241000 0.4337000 0.5079000 0.4702000 0.3691000 0.4936000 36.71 70.0 125 1000.00 0.00 100.00 0 100.00 1/1
chr1 101188963 rs72732161 C A . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 70.0 10 183.90 26.67 60.00 0 60.00 0/1
chr1 101194965 rs68164684 G GT . PASS . . . . . . 36.06 69.38 31 1000.00 5.42 80.65 0 100.00 0/1
chr1 101199979 rs3176875 A G . PASS 0.8328000 0.9813000 0.8532000 0.9801000 0.9714000 0.9141000 36.0 70.0 12 453.75 0.00 100.00 0 100.00 1/1
chr1 101203827 rs3176879 G A . PASS 0.6929000 0.9625000 0.8512000 0.9702000 0.9663000 0.8712000 36.5 70.0 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 101272402 rs12132178 C A . PASS 0.3154000 0.4611000 0.4048000 0.5646000 0.5440000 0.4483000 36.75 70.0 87 1000.00 0.57 55.17 0 55.17 0/1
chr1 101372607 rs4908106 C A . PASS 0.9985000 0.9971000 1.0000000 0.9980000 0.9939000 0.9976000 36.14 70.0 14 533.14 0.00 100.00 0 100.00 1/1
chr1 101487373 rs201632964 A AACAC . PASS . . . . . . 37.0 70.0 11 288.76 27.27 18.18 0 81.82 0/1
chr1 101487373 rs201632964 A AAC . PASS . . . . . . 36.5 70.0 11 288.76 12.99 63.64 0 81.82 0/1
chr1 101621088 rs4000121 C G . PASS 0.6301000 0.6902000 0.3056000 0.6362000 0.4949000 0.5479000 36.6 70.0 119 1000.00 4.29 50.42 0 50.42 0/1
chr1 101621090 rs11426636 G GC . PASS 0.1861000 0.2349000 0.2351000 0.3131000 0.2945000 0.2494000 35.71 70.0 116 1000.00 3.26 46.55 0 46.55 0/1
chr1 101704532 rs3737577 G T . PASS 0.0151000 0.1729000 0.1300000 0.3380000 0.1247000 0.1464000 36.2 70.0 35 472.58 9.52 42.86 0 42.86 0/1
chr1 102252024 rs61806265 T C . PASS . . . . . . 37.0 56.44 133 319.07 0.42 13.53 0 13.53 0/1
chr1 102252078 . T G . PASS . . . . . . 36.43 56.14 188 262.69 7.95 11.17 0 11.17 0/1
chr1 102271774 rs4907955 G A . PASS 0.5908000 0.4150000 0.6478000 0.5845000 0.3231000 0.5244000 37.0 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 102273920 rs71592229,rs57341152 AAAGATG A . PASS 0.5499000 0.3977000 0.6478000 0.5586000 0.3037000 0.5022000 36.17 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 102273948 rs10782853 G T . PASS 0.5484000 0.3977000 0.6478000 0.5586000 0.3037000 0.5018000 36.45 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 102462446 rs11276972,rs67744758 GTCAGT G . PASS 0.2360000 0.2450000 0.2192000 0.3489000 0.3292000 0.2748000 35.72 70.0 25 967.18 0.00 100.00 0 100.00 1/1
chr1 102608577 rs2022858 G A . PASS 0.4690000 0.5677000 0.4950000 0.5865000 0.5031000 0.5182000 36.59 70.0 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 102841361 . A ATGTGTGTG . PASS . . . . . . 35.0 70.0 11 113.68 45.45 18.18 0 45.45 0/1
chr1 103354138 rs1676486 A G . PASS 0.8048000 0.8948000 0.7480000 0.8300000 0.6616000 0.7829000 35.29 70.0 56 920.50 3.57 50.00 0 50.00 0/1
chr1 103354428 rs1763347 A G . PASS 0.2587000 0.8401000 0.7460000 0.8042000 0.6462000 0.6226000 36.0 70.0 42 330.35 2.38 28.57 0 28.57 0/1
chr1 103354939 . C CTG . PASS 0.1490000 0.6931000 0.5754000 0.5278000 0.4581000 0.4261000 35.8 70.0 26 481.23 15.90 57.69 0 57.69 0/1
chr1 103364396 rs1763344 C T . PASS 0.1694000 0.0533000 0.0655000 0.0835000 0.0429000 0.0905000 37.0 70.0 10 62.74 40.00 30.00 0 30.00 0/1
chr1 103364409 rs1676497 A T . PASS 0.3464000 0.0634000 0.0655000 0.0835000 0.0429000 0.1386000 37.0 70.0 15 168.85 26.67 40.00 0 40.00 0/1
chr1 103364618 rs1676498 A T . PASS 0.1694000 0.0533000 0.0655000 0.0835000 0.0429000 0.0905000 34.0 70.0 13 79.33 11.54 30.77 0 30.77 0/1
chr1 103388799 rs34112708,rs72309176 TAC T . PASS 0.0008000 0.0245000 0.0645000 0.0567000 0.0552000 0.0387000 36.33 70.0 23 255.66 0.97 39.13 0 39.13 0/1
chr1 103400490 . TGA TAT . PASS . . . . . . 37.0 70.0 11 55.58 18.18 27.27 0 27.27 0/1
chr1 103405793 rs2126642 G A . PASS 0.0681000 0.2305000 0.1042000 0.2406000 0.2086000 0.1599000 37.0 70.0 10 271.59 0.00 80.00 0 80.00 0/1
chr1 103405892 rs17127270 G A . PASS 0.1989000 0.0634000 0.0258000 0.1769000 0.1053000 0.1226000 35.29 70.0 37 136.55 45.56 18.92 0 18.92 0/1
chr1 103427844 rs55682104 T A . PASS 0.0091000 0.0389000 0.0060000 0.1292000 0.0900000 0.0525000 36.74 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 103444679 rs11164649 T G . PASS 0.1717000 0.6916000 0.9127000 0.7018000 0.8364000 0.6292000 36.62 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 103449598 rs2615978 G C . PASS 0.8510000 0.9726000 1.0000000 0.9662000 0.9908000 0.9483000 37.0 70.0 16 628.69 0.00 100.00 0 100.00 1/1
chr1 103461508 rs2622867 T A . PASS 0.7632000 0.9640000 1.0000000 0.9662000 0.9908000 0.9239000 36.78 69.63 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 103463976 rs2622870 G T . PASS 0.6074000 0.9366000 0.9335000 0.9354000 0.9397000 0.8494000 36.48 70.0 23 909.07 0.00 100.00 0 100.00 1/1
chr1 103467615 rs2929162 C T . PASS 0.7640000 0.9640000 1.0000000 0.9662000 0.9908000 0.9241000 37.0 68.46 13 507.53 0.00 100.00 0 100.00 1/1
chr1 103471734 . A AAAATAAATAAATAAAT . PASS . . . . . . 36.33 66.67 20 408.75 23.64 55.00 0 65.00 0/1
chr1 103483514 rs945748 C T . PASS 0.2012000 0.6902000 0.9117000 0.7028000 0.8476000 0.6390000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 103487394 rs35291481 CT C . PASS . . . . . . 34.24 70.0 25 930.15 0.00 100.00 0 100.00 1/1
chr1 103491008 rs41292531 G A . PASS 0.0015000 0.0029000 0.0000000 0.0109000 0.0112000 0.0051917 37.0 70.0 27 596.36 5.23 62.96 0 62.96 0/1
chr1 103496620 rs7523441 G T . PASS 0.8313000 0.9726000 1.0000000 0.9662000 0.9908000 0.9431000 36.56 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 103573547 rs6691654 G A . PASS 0.5484000 0.9496000 0.9950000 0.9960000 0.9980000 0.8716000 35.5 70.0 16 608.82 0.00 100.00 0 100.00 1/1
chr1 104231733 . T A . PASS . . . . . . 37.0 34.75 24 58.22 41.67 16.67 0 16.67 0/1
chr1 104470005 rs7550463 T C . PASS 0.8419000 0.9856000 1.0000000 0.9980000 1.0000000 0.9559000 36.44 69.02 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 105285402 rs10881195 A G . PASS 0.4546000 0.5764000 0.3274000 0.5835000 0.4908000 0.4788000 36.04 70.0 67 786.10 2.51 37.31 0 37.31 0/1
chr1 105638421 rs11184419 C T . PASS 0.4251000 0.6009000 0.6696000 0.6471000 0.5726000 0.5721000 36.4 70.0 45 655.48 11.11 44.44 0 44.44 0/1
chr1 106306104 rs1528685 C T . PASS 0.0318000 0.2493000 0.3958000 0.3370000 0.3108000 0.2510000 35.29 70.0 13 208.78 17.58 53.85 0 53.85 0/1
chr1 106306182 rs791002 C T . PASS 0.3064000 0.6715000 0.5486000 0.6402000 0.5757000 0.5254000 36.4 70.0 58 616.35 2.76 34.48 0 34.48 0/1
chr1 106434008 rs1674733 C T . PASS 0.9970000 0.9986000 1.0000000 1.0000000 1.0000000 0.9990000 37.0 69.56 16 632.84 0.00 100.00 0 100.00 1/1
chr1 106435109 rs12753157 A T . PASS 0.0197000 0.1441000 0.1577000 0.2406000 0.1912000 0.1426000 37.0 70.0 16 291.15 1.39 56.25 0 56.25 0/1
chr1 107220341 rs11184961 A G . PASS 0.3283000 0.6037000 0.4802000 0.6819000 0.6022000 0.5216000 36.72 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 107559668 rs35817131,rs55823123 T TCTC . PASS 0.6135000 0.3991000 0.4603000 0.5616000 0.5245000 0.5252000 36.76 70.0 89 1000.00 4.63 53.93 0 53.93 0/1
chr1 107599918 rs2232016 C T . PASS 0.0098000 0.0865000 0.1448000 0.1918000 0.2198000 0.1252000 37.0 70.0 95 1000.00 10.03 44.21 0 44.21 0/1
chr1 107936371 rs17018855 G A . PASS 0.0303000 0.0072000 0.0407000 0.0239000 0.0450000 0.0308000 36.54 70.0 44 909.11 1.40 59.09 0 59.09 0/1
chr1 107936393 rs2587895 G A . PASS 0.5091000 0.5389000 0.5169000 0.5030000 0.4826000 0.5084000 36.59 70.0 54 1000.00 3.96 53.70 0 53.70 0/1
chr1 107979396 rs480392 A C . PASS 0.8185000 0.9870000 1.0000000 1.0000000 1.0000000 0.9503000 36.59 69.77 87 1000.00 0.00 100.00 0 100.00 1/1
chr1 107979566 rs56311800 AT A . PASS 0.4697000 0.6772000 0.5427000 0.6769000 0.6452000 0.5891000 33.0 70.0 11 370.39 0.00 100.00 0 100.00 1/1
chr1 108047973 rs12063102 C T . PASS 0.0787000 0.0375000 0.0119000 0.0388000 0.0266000 0.0413000 37.0 70.0 45 458.64 22.22 33.33 0 33.33 0/1
chr1 108116051 rs17236099 G A . PASS 0.0552000 0.0159000 0.0536000 0.0318000 0.0266000 0.0391000 35.18 70.0 62 1000.00 1.08 53.23 0 53.23 0/1
chr1 108185301 rs12403266 C G . PASS 0.0469000 0.1671000 0.2262000 0.1302000 0.2301000 0.1522000 36.56 70.0 112 1000.00 1.82 49.11 0 49.11 0/1
chr1 108292260 rs6672483 A G . PASS 0.6921000 0.8098000 0.9563000 0.6133000 0.8405000 0.7748000 37.0 70.0 13 262.57 3.85 61.54 0 61.54 0/1
chr1 108299809 rs12138353 G A . PASS 0.4826000 0.5375000 0.3641000 0.5209000 0.5879000 0.4946000 37.0 70.0 13 53.72 10.26 23.08 0 23.08 0/1
chr1 108303172 rs11185174 G C . PASS 0.5477000 0.3775000 0.4177000 0.6372000 0.3354000 0.4744000 35.67 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 108307642 rs7514025 C T . PASS 0.6876000 0.6268000 0.7302000 0.7853000 0.5930000 0.6889000 36.48 70.0 23 913.22 0.00 100.00 0 100.00 1/1
chr1 108307727 rs7528153 T A . PASS 0.5862000 0.4251000 0.3879000 0.7038000 0.3824000 0.5078000 36.22 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 108313258 rs6583048 C T . PASS 0.6876000 0.6196000 0.6776000 0.7753000 0.5706000 0.6709000 37.0 70.0 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 108315305 rs4611048 C T . PASS 0.8427000 0.9813000 1.0000000 0.9980000 1.0000000 0.9555000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 108507541 rs71796067 GGCC G . PASS 0.3578000 0.7723000 0.8264000 0.7386000 0.6554000 0.6442000 36.7 70.0 20 659.05 0.00 100.00 0 100.00 1/1
chr1 108581907 rs4626916 G A . PASS 0.4017000 0.4207000 0.6845000 0.3419000 0.3252000 0.4343000 36.65 70.0 131 1000.00 6.76 51.91 0 51.91 0/1
chr1 108679532 rs17513812 C T . PASS 0.1067000 0.1715000 0.0774000 0.2068000 0.1503000 0.1384000 37.0 70.0 21 71.41 11.90 19.05 0 19.05 0/1
chr1 108681600 rs34563977 T C . PASS 0.1067000 0.1715000 0.0794000 0.2068000 0.1503000 0.1388000 36.43 70.0 44 700.26 5.63 47.73 0 47.73 0/1
chr1 108703834 rs11185293 C T . PASS 0.0076000 0.0288000 0.0040000 0.0775000 0.0613000 0.0343000 37.0 70.0 62 908.72 6.93 43.55 0 43.55 0/1
chr1 108724518 rs490680 A G . PASS 0.9009000 0.5591000 0.6240000 0.6829000 0.5644000 0.6883000 35.5 70.0 27 530.57 6.02 59.26 0 59.26 0/1
chr1 108724693 rs491785 G A . PASS 0.9009000 0.5591000 0.6240000 0.6829000 0.5644000 0.6883000 37.0 68.46 23 441.32 0.67 56.52 0 56.52 0/1
chr1 108728484 rs862493 T C . PASS 0.1815000 0.1657000 0.0794000 0.2157000 0.1769000 0.1647000 35.34 70.0 62 944.24 7.56 46.77 0 46.77 0/1
chr1 108766424 rs3879436 A G . PASS 0.1127000 0.5677000 0.5456000 0.3807000 0.5624000 0.4046000 37.0 66.92 50 360.05 29.23 26.00 0 26.00 0/1
chr1 108771524 rs200205508 C T . PASS . . . . . . 36.0 63.42 37 345.40 4.50 32.43 0 32.43 0/1
chr1 108771721 rs79996376 T C . PASS . . . . . . 37.0 56.89 168 1000.00 1.07 33.93 0 33.93 0/1
chr1 108775036 . A C . PASS . . . . . . 37.0 35.0 16 82.30 0.00 25.00 0 25.00 0/1
chr1 108786457 . A C . PASS . . . . . . 37.0 70.0 10 58.59 20.00 30.00 0 30.00 0/1
chr1 108879078 rs6690492 T C . PASS 0.4319000 0.5893000 0.5913000 0.3688000 0.5491000 0.4960000 37.0 70.0 36 527.49 6.94 44.44 0 44.44 0/1
chr1 108994925 rs115514944 A G . PASS 0.2262000 0.7767000 0.8601000 0.7813000 0.8364000 0.6607000 36.77 54.04 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 108994952 rs145700606 G T . PASS 0.2625000 0.7882000 0.8611000 0.7922000 0.8415000 0.6753000 36.41 54.1 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 109008064 . G A . PASS 0.0008000 0.0000000 0.0000000 0.0010000 0.0020000 0.0007987 37.0 54.0 16 86.45 37.50 25.00 0 25.00 0/1
chr1 109143093 rs17024882 C T . PASS 0.0008000 0.0663000 0.0000000 0.0497000 0.0358000 0.0264000 35.0 70.0 13 167.02 0.00 46.15 0 46.15 0/1
chr1 109170746 rs2133198 C T . PASS 0.5121000 0.7925000 0.7599000 0.9324000 0.8241000 0.7462000 37.0 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 109254666 rs1475694 A T . PASS 0.4924000 0.5720000 0.6052000 0.6372000 0.5573000 0.5679000 36.25 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 109254672 rs1475693 T C . PASS 0.5756000 0.5677000 0.6111000 0.6372000 0.5583000 0.5907000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 109255513 rs3006864 G T . PASS 0.6097000 0.9654000 0.9018000 0.9851000 0.9703000 0.8636000 36.25 70.0 16 616.68 0.00 100.00 0 100.00 1/1
chr1 109260357 rs4970804 G A . PASS 0.2398000 0.6816000 0.8185000 0.6362000 0.6902000 0.5851000 35.67 70.0 21 268.24 0.00 42.86 0 42.86 0/1
chr1 109265029 rs4423040 G T . PASS 0.2496000 0.6657000 0.8621000 0.6044000 0.6431000 0.5787000 36.62 70.0 60 1000.00 3.33 53.33 0 53.33 0/1
chr1 109268573 rs4494160 T C . PASS 0.7958000 0.5346000 0.2341000 0.7127000 0.6063000 0.5929000 36.39 69.75 79 1000.00 0.00 100.00 0 100.00 1/1
chr1 109270402 rs10494096 G A . PASS 0.2239000 0.3213000 0.1865000 0.4841000 0.4642000 0.3291000 37.0 70.0 20 408.57 0.00 60.00 0 60.00 0/1
chr1 109273456 rs4970809 A G . PASS 0.5628000 0.4352000 0.2014000 0.5388000 0.4744000 0.4503000 35.29 70.0 78 854.28 4.58 35.90 0 35.90 0/1
chr1 109273610 rs4970810 G A . PASS 0.5711000 0.4352000 0.1984000 0.5378000 0.4703000 0.4509000 37.0 70.0 14 134.24 2.86 35.71 0 35.71 0/1
chr1 109289353 rs1124427 C G . PASS 0.7012000 0.5173000 0.2232000 0.7416000 0.6268000 0.5731000 37.0 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 109289487 rs6604120 C T . PASS 0.7012000 0.5173000 0.2232000 0.7425000 0.6237000 0.5727000 37.0 70.0 23 925.24 0.00 100.00 0 100.00 1/1
chr1 109299453 rs1277044 C G . PASS 0.7080000 0.5216000 0.2222000 0.7425000 0.6278000 0.5757000 35.46 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 109301250 rs1277042 G C . PASS 0.7080000 0.5202000 0.2222000 0.7425000 0.6278000 0.5755000 37.0 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 109325028 rs1277051 T C . PASS 0.2368000 0.1138000 0.0258000 0.2306000 0.1800000 0.1649000 36.48 70.0 43 786.81 8.90 53.49 0 53.49 0/1
chr1 109338861 rs1127635 G C . PASS 0.2731000 0.3213000 0.1925000 0.4334000 0.4458000 0.3295000 37.0 70.0 38 308.49 1.44 28.95 0 28.95 0/1
chr1 109358755 rs11453763 A AT . PASS 0.2474000 0.3228000 0.2173000 0.4414000 0.4458000 0.3295000 37.0 70.0 21 389.97 9.52 57.14 0 57.14 0/1
chr1 109358958 rs6696787 T C . PASS 0.1097000 0.2032000 0.0784000 0.2276000 0.1933000 0.1564000 35.8 70.0 32 682.60 11.25 62.50 0 62.50 0/1
chr1 109366286 rs7522157 C T . PASS 0.0598000 0.1787000 0.1121000 0.2873000 0.2301000 0.1657000 37.0 70.0 79 1000.00 6.93 53.16 0 53.16 0/1
chr1 109366370 rs7522260 C T . PASS 0.3192000 0.5130000 0.3562000 0.6590000 0.5767000 0.4720000 36.41 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 109369791 rs11102505 G A . PASS 0.3480000 0.1945000 0.1240000 0.2396000 0.1933000 0.2296000 36.61 70.0 53 1000.00 3.53 58.49 0 58.49 0/1
chr1 109369797 rs11102506 T G . PASS 0.6331000 0.5360000 0.2649000 0.5934000 0.4775000 0.5072000 36.81 70.0 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 109369915 rs7551421 G T . PASS 0.6331000 0.5288000 0.2649000 0.5805000 0.4755000 0.5032000 36.4 70.0 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 109377070 rs12060255 C A . PASS 0.2095000 0.0951000 0.1200000 0.1133000 0.0900000 0.1330000 35.88 70.0 65 1000.00 4.52 49.23 0 49.23 0/1
chr1 109377436 rs41278492 C T . PASS 0.0257000 0.0677000 0.1151000 0.0477000 0.0348000 0.0557000 35.0 70.0 10 176.04 0.00 60.00 0 60.00 0/1
chr1 109377537 rs12057309 G A . PASS 0.1967000 0.0922000 0.1181000 0.1113000 0.0879000 0.1280000 37.0 70.0 63 696.85 4.76 34.92 0 34.92 0/1
chr1 109391486 rs1149142 G A . PASS 0.9584000 0.9971000 1.0000000 1.0000000 1.0000000 0.9886000 36.77 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 109394564 rs17030016 T C . PASS 0.1127000 0.0663000 0.0407000 0.0537000 0.0951000 0.0765000 36.57 70.0 70 914.40 11.43 40.00 0 40.00 0/1
chr1 109395105 rs1277207 C T . PASS 0.8797000 0.8790000 0.9395000 0.7903000 0.8456000 0.8670000 35.43 70.0 52 735.71 15.05 44.23 0 44.23 0/1
chr1 109428249 rs10857987 G A . PASS 0.5635000 0.2118000 0.0546000 0.2942000 0.2566000 0.2983000 35.29 70.0 51 655.19 7.84 41.18 0 41.18 0/1
chr1 109457151 rs11102642 C T . PASS 0.0446000 0.2752000 0.3214000 0.2237000 0.1626000 0.1913000 34.0 70.0 13 83.47 30.77 30.77 0 30.77 0/1
chr1 109465165 rs35029887,rs374875864 ACTT A . PASS . . . . . . 35.02 70.0 91 1000.00 5.73 56.04 0 56.04 0/1
chr1 109479978 rs168107 G T . PASS 0.6233000 0.2147000 0.0377000 0.2803000 0.2505000 0.3071000 37.0 70.0 52 475.20 14.42 30.77 0 30.77 0/1
chr1 109482220 rs338480 C T . PASS 0.3101000 0.1585000 0.0337000 0.2157000 0.1943000 0.1919000 37.0 70.0 40 766.08 3.18 55.00 0 55.00 0/1
chr1 109482826 rs338479 C T . PASS 0.4107000 0.1715000 0.0218000 0.2217000 0.2106000 0.2222000 37.0 70.0 25 435.29 5.54 52.00 0 52.00 0/1
chr1 109483975 rs193139 T C . PASS 0.3911000 0.1441000 0.0228000 0.1461000 0.1104000 0.1787000 37.0 70.0 26 432.29 15.38 50.00 0 50.00 0/1
chr1 109486196 rs338466 A G . PASS 0.7579000 0.5101000 0.3958000 0.5219000 0.4254000 0.5383000 36.83 69.71 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 109486240 rs3215062 TA T . PASS 0.6263000 0.4726000 0.3948000 0.4632000 0.4110000 0.4836000 36.44 69.53 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 109486269 rs41336244 C A . PASS 0.0166000 0.0692000 0.0218000 0.0497000 0.0644000 0.0409000 35.8 70.0 22 302.85 5.45 45.45 0 45.45 0/1
chr1 109493134 rs10695133,rs34131552 G GTTA . PASS 0.4766000 0.4164000 0.3690000 0.4284000 0.3384000 0.4099000 36.67 70.0 26 343.92 2.56 46.15 0 46.15 0/1
chr1 109524584 rs487901 C A . PASS 0.1218000 0.2536000 0.2163000 0.2078000 0.1677000 0.1853000 35.91 70.0 15 365.70 9.70 73.33 0 73.33 0/1
chr1 109529322 rs61696019,rs80014712 T TAA . PASS 0.9281000 0.9971000 1.0000000 1.0000000 1.0000000 0.9806000 36.33 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 109534940 rs337296 G A . PASS 0.9312000 0.9971000 1.0000000 1.0000000 1.0000000 0.9814000 36.5 66.54 24 954.99 0.00 100.00 0 100.00 1/1
chr1 109545046 rs184606 C T . PASS 0.9312000 0.9971000 1.0000000 1.0000000 1.0000000 0.9814000 36.45 70.0 22 871.45 0.00 100.00 0 100.00 1/1
chr1 109633377 rs528661 C G . PASS 0.2027000 0.0303000 0.0000000 0.0934000 0.0133000 0.0791000 36.08 70.0 27 413.12 19.94 48.15 0 48.15 0/1
chr1 109635398 rs512671 A G . PASS 0.6135000 0.4207000 0.4683000 0.3340000 0.4632000 0.4720000 36.0 70.0 104 1000.00 3.21 46.15 0 46.15 0/1
chr1 109637229 rs551001 C G . PASS 0.2670000 0.0951000 0.0308000 0.1730000 0.2188000 0.1673000 36.29 70.0 40 541.07 14.12 42.50 0 42.50 0/1
chr1 109649048 rs654458 T A . PASS 0.6876000 0.4265000 0.4663000 0.3300000 0.4560000 0.4898000 37.0 70.0 10 267.44 0.00 80.00 0 80.00 0/1
chr1 109656142 rs141920812 ACTCGGATCAAC A . PASS 0.2201000 0.0331000 0.0010000 0.0895000 0.0777000 0.0960000 37.0 70.0 10 91.94 0.00 40.00 0 40.00 0/1
chr1 109656946 rs667524 T C . PASS 0.7511000 0.4841000 0.4812000 0.3718000 0.5133000 0.5371000 37.0 69.39 90 1000.00 2.02 36.67 0 36.67 0/1
chr1 109656981 rs586530 T C . PASS 0.6672000 0.3602000 0.4167000 0.2127000 0.2045000 0.3926000 35.84 69.35 76 997.64 8.74 40.79 0 40.79 0/1
chr1 109704390 rs643197 C G . PASS 0.9448000 0.9957000 0.9990000 1.0000000 0.9284000 0.9706000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 109704618 rs678238 A G . PASS 0.9849000 0.9986000 0.9990000 1.0000000 1.0000000 0.9956000 36.57 70.0 139 1000.00 0.00 100.00 0 100.00 1/1
chr1 109714403 rs17014495 C A . PASS 0.6974000 0.4452000 0.5079000 0.3897000 0.5061000 0.5252000 37.0 70.0 29 502.64 4.14 51.72 0 51.72 0/1
chr1 109714750 rs2297758 T C . PASS 0.6989000 0.4438000 0.4901000 0.3897000 0.5092000 0.5224000 37.0 70.0 12 98.49 33.33 33.33 0 33.33 0/1
chr1 109734157 rs606066 T C . PASS 0.4652000 0.8156000 0.9980000 0.7565000 0.8998000 0.7644000 37.0 70.0 17 674.61 0.00 100.00 0 100.00 1/1
chr1 109734541 rs645128 C T . PASS 0.7110000 0.8804000 0.9980000 0.8529000 0.9765000 0.8726000 36.17 70.0 29 1000.00 4.19 96.55 0 100.00 1/1
chr1 109735298 rs658779 T C . PASS 0.3593000 0.8055000 0.9990000 0.7565000 0.9325000 0.7416000 36.54 70.0 78 1000.00 0.00 100.00 0 100.00 1/1
chr1 109735416 rs659543 A C . PASS 0.3593000 0.8055000 0.9980000 0.7565000 0.9254000 0.7400000 36.73 70.0 90 1000.00 0.00 100.00 0 100.00 1/1
chr1 109735504 rs659659 T C . PASS 0.3593000 0.8055000 0.9980000 0.7565000 0.9325000 0.7414000 36.48 70.0 69 1000.00 0.00 100.00 0 100.00 1/1
chr1 109737063 rs2359246 C T . PASS 0.3033000 0.7968000 0.9702000 0.7634000 0.8937000 0.7137000 36.71 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 109737090 rs2359245 G A . PASS 0.3101000 0.7954000 0.9702000 0.7634000 0.8937000 0.7153000 36.36 69.64 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 109737132 rs2359244 T C . PASS 0.4667000 0.8127000 0.9702000 0.7654000 0.9305000 0.7666000 37.0 69.67 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 109737172 rs2359243 C T . PASS 0.3048000 0.7968000 0.9702000 0.7634000 0.8937000 0.7141000 36.53 69.61 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 109737314 rs2359242 T C . PASS 0.2912000 0.7939000 0.9980000 0.7634000 0.8947000 0.7159000 34.82 70.0 11 399.97 0.00 100.00 0 100.00 1/1
chr1 109737320 rs2359241 G A . PASS 0.2905000 0.7939000 0.9980000 0.7634000 0.8947000 0.7157000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 109740310 rs113482805 A AGAGAGAGTGTGT . PASS 0.2171000 0.2392000 0.5020000 0.1590000 0.3487000 0.2915000 36.68 70.0 150 1000.00 0.79 31.33 0 46.00 0/1
chr1 109740364 rs17014532 T G . PASS 0.3056000 0.2723000 0.5308000 0.2465000 0.4223000 0.3572000 36.17 70.0 73 930.98 3.59 39.73 0 39.73 0/1
chr1 109740548 rs2296696 G T . PASS 0.2746000 0.2738000 0.5109000 0.2435000 0.4192000 0.3440000 37.0 70.0 12 219.66 9.52 58.33 0 58.33 0/1
chr1 109742452 rs913178 C T . PASS 0.4675000 0.8055000 0.9593000 0.7893000 0.8763000 0.7578000 36.2 68.67 15 579.06 0.00 100.00 0 100.00 1/1
chr1 109742485 rs913179 G A . PASS 0.4713000 0.8055000 0.9593000 0.7893000 0.8763000 0.7588000 36.59 69.31 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 109743622 rs3736956 C T . PASS 0.0461000 0.5014000 0.4504000 0.5358000 0.4448000 0.3668000 37.0 70.0 15 381.85 14.55 73.33 0 73.33 0/1
chr1 109745618 rs1052878 T C . PASS 0.7761000 0.9049000 0.9593000 0.8996000 0.9540000 0.8904000 37.0 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 109771063 rs683182 T C . PASS 0.3911000 0.8098000 0.8879000 0.7883000 0.6524000 0.6799000 36.04 70.0 81 1000.00 0.05 60.49 0 61.73 0/1
chr1 109773690 rs55823508,rs72431616 AAT A . PASS . . . . . . 34.75 70.0 30 180.83 11.67 26.67 0 26.67 0/1
chr1 109773707 rs75028309 T A . PASS . . . . . . 35.67 70.0 26 210.29 7.69 30.77 0 34.62 0/1
chr1 109778577 rs658092 T C . PASS 0.4259000 0.8127000 0.8879000 0.7873000 0.6524000 0.6893000 36.5 70.0 53 798.49 8.81 45.28 0 45.28 0/1
chr1 109779530 rs72701097 C T . PASS 0.0000000 0.0115000 0.0526000 0.0169000 0.0552000 0.0264000 37.0 70.0 34 449.98 5.04 41.18 0 41.18 0/1
chr1 109779556 rs631927 T A . PASS 0.9576000 0.9986000 1.0000000 1.0000000 1.0000000 0.9886000 37.0 70.0 20 795.78 0.00 100.00 0 100.00 1/1
chr1 109792735 rs59201433,rs10629280,rs144034706 A ACGC . PASS 0.4198000 0.6311000 0.5298000 0.7276000 0.6002000 0.5683000 36.36 70.0 83 1000.00 5.18 56.63 0 56.63 0/1
chr1 109794252 rs454107 T C . PASS 0.7186000 0.9625000 0.9970000 0.9672000 0.9417000 0.9020000 36.74 70.0 91 1000.00 0.00 100.00 0 100.00 1/1
chr1 109795026 rs413380 T C . PASS 0.7194000 0.9611000 0.9970000 0.9672000 0.9417000 0.9020000 36.54 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 109795608 rs437444 T C . PASS 0.7648000 0.9654000 0.9970000 0.9662000 0.9417000 0.9143000 37.0 70.0 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 109796053 rs2359414 C T . PASS 0.2753000 0.2522000 0.4504000 0.2416000 0.2904000 0.3035000 36.14 70.0 31 446.99 7.37 45.16 0 45.16 0/1
chr1 109804883 rs66795935 C G . PASS 0.0855000 0.0418000 0.0020000 0.0775000 0.0685000 0.0577000 36.57 70.0 56 952.38 3.57 50.00 0 50.00 0/1
chr1 109807283 rs6657811 A T . PASS 0.1241000 0.0576000 0.0050000 0.1113000 0.0982000 0.0833000 37.0 70.0 69 1000.00 4.93 43.48 0 43.48 0/1
chr1 109810199 . AGG AAA . PASS . . . . . . 36.33 70.0 78 893.36 1.14 34.62 0 34.62 0/1
chr1 109810544 rs2281894 C A . PASS 0.0537000 0.2205000 0.4206000 0.1928000 0.2955000 0.2258000 36.41 70.0 82 1000.00 12.20 50.00 0 50.00 0/1
chr1 109813510 rs41279716 A T . PASS 0.0734000 0.0793000 0.0546000 0.1849000 0.2096000 0.1194000 37.0 70.0 16 207.61 5.36 43.75 0 43.75 0/1
chr1 109813719 rs17035665 C T . PASS 0.2247000 0.0965000 0.0556000 0.1829000 0.2076000 0.1611000 37.0 70.0 42 592.98 17.46 42.86 0 42.86 0/1
chr1 109814880 rs4970834 C T . PASS 0.3003000 0.1124000 0.0367000 0.1859000 0.1646000 0.1717000 37.0 70.0 36 443.97 16.67 38.89 0 38.89 0/1
chr1 109815252 rs611917 A G . PASS 0.3154000 0.2651000 0.0437000 0.3131000 0.2730000 0.2450000 36.65 70.0 54 1000.00 2.83 62.96 0 62.96 0/1
chr1 109816176 rs441853 A C . PASS 0.8926000 0.9870000 1.0000000 1.0000000 1.0000000 0.9698000 36.61 69.67 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 109825360 rs643457 C T . PASS 0.8979000 0.9856000 1.0000000 1.0000000 1.0000000 0.9710000 36.39 70.0 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 109836835 rs3738777 A G . PASS 0.0930000 0.3501000 0.4732000 0.3211000 0.4673000 0.3241000 36.54 70.0 64 848.91 0.24 40.62 0 40.62 0/1
chr1 109837853 rs72703216 G A . PASS 0.0000000 0.0058000 0.0000000 0.0139000 0.0061000 0.0047923 36.25 70.0 54 461.32 16.20 29.63 0 29.63 0/1
chr1 109838833 rs616899 T C . PASS 0.8767000 0.9870000 1.0000000 1.0000000 1.0000000 0.9657000 36.79 70.0 168 1000.00 0.00 100.00 0 100.00 1/1
chr1 109838918 rs629001 C T . PASS 0.6558000 0.9452000 1.0000000 0.9284000 0.9356000 0.8746000 36.27 70.0 151 1000.00 1.57 54.30 0 54.30 0/1
chr1 109839392 rs604349 A G . PASS 0.2663000 0.8977000 0.9722000 0.9046000 0.9264000 0.7530000 37.0 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 109839433 rs1278285 A G . PASS 0.7330000 0.9697000 1.0000000 1.0000000 1.0000000 0.9253000 36.62 70.0 95 1000.00 0.00 100.00 0 100.00 1/1
chr1 109839738 rs3850615 C A . PASS 0.2867000 0.0576000 0.0694000 0.0835000 0.1329000 0.1404000 36.74 70.0 97 1000.00 2.87 47.42 0 47.42 0/1
chr1 109839954 rs603624 G C . PASS 0.6241000 0.7911000 0.6855000 0.8260000 0.7883000 0.7322000 37.0 68.46 24 434.15 23.08 54.17 0 54.17 0/1
chr1 109883576 rs3217347 C CAT . PASS 0.5605000 0.8415000 0.9563000 0.7137000 0.7178000 0.7406000 35.0 70.0 11 371.37 0.00 100.00 0 100.00 1/1
chr1 109884775 rs2228604 T G . PASS 0.3593000 0.8271000 0.9563000 0.7127000 0.7188000 0.6855000 36.75 70.0 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 109897103 rs11142 A G . PASS 0.6884000 0.8530000 0.9563000 0.7147000 0.7188000 0.7764000 36.39 70.0 99 1000.00 0.00 100.00 0 100.00 1/1
chr1 109912051 rs17646665 A G . PASS 0.0756000 0.0620000 0.0238000 0.0527000 0.0358000 0.0509000 37.0 70.0 13 304.33 11.97 69.23 0 69.23 0/1
chr1 109954179 rs33980057 C CAT . PASS 0.5174000 0.5937000 0.6429000 0.5527000 0.4908000 0.5551000 36.76 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 109954355 rs11102979 C G . PASS . . . . . . 37.0 70.0 13 503.38 0.00 100.00 0 100.00 1/1
chr1 109958035 rs1465607 T C . PASS 0.5787000 0.8429000 0.9563000 0.7147000 0.7188000 0.7460000 36.64 69.39 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 110009434 rs2787015 A C . PASS 0.5991000 0.8487000 0.9633000 0.6899000 0.7137000 0.7476000 36.44 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 110009654 rs138525393 AC A . PASS 0.3820000 0.8271000 0.9633000 0.6889000 0.7137000 0.6871000 36.45 70.0 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 110009802 rs2272272 G A . PASS 0.0764000 0.0634000 0.0228000 0.0517000 0.0348000 0.0507000 36.54 70.0 39 924.16 2.56 66.67 0 66.67 0/1
chr1 110018148 rs530565 C T . PASS 0.9992000 0.9942000 1.0000000 0.9771000 0.9969000 0.9938000 37.0 70.0 18 716.39 0.00 100.00 0 100.00 1/1
chr1 110037709 rs45448998 C T . PASS 0.0038000 0.0519000 0.0010000 0.0765000 0.0491000 0.0333000 37.0 69.29 44 1000.00 5.19 63.64 0 63.64 0/1
chr1 110091282 rs1279195 C T . PASS 0.1702000 0.1023000 0.0228000 0.0865000 0.1370000 0.1078000 37.0 70.0 14 259.55 21.43 57.14 0 57.14 0/1
chr1 110134183 rs55773147 C T . PASS 0.0401000 0.0908000 0.0218000 0.0815000 0.0654000 0.0567000 34.6 70.0 17 113.20 9.41 29.41 0 29.41 0/1
chr1 110152598 rs59856858 TG T . PASS 0.0038000 0.0389000 0.0000000 0.0616000 0.0348000 0.0256000 35.92 70.0 33 346.87 34.85 36.36 0 36.36 0/1
chr1 110168888 rs493972 C G . PASS 0.7330000 0.7695000 0.9802000 0.6620000 0.8916000 0.8045000 36.84 70.0 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 110169957 rs524998 A G . PASS 0.8865000 0.7867000 0.9812000 0.6769000 0.8906000 0.8504000 36.66 69.63 107 1000.00 0.00 100.00 0 100.00 1/1
chr1 110170896 rs863978 T C . PASS 0.7337000 0.7695000 0.9802000 0.6769000 0.8916000 0.8077000 36.92 69.87 156 1000.00 0.00 100.00 0 100.00 1/1
chr1 110171525 rs560674 C G . PASS 0.1241000 0.1282000 0.0446000 0.1710000 0.1636000 0.1258000 37.0 70.0 14 171.87 9.52 42.86 0 42.86 0/1
chr1 110171705 rs523786 A C . PASS 0.8132000 0.7795000 0.9802000 0.6779000 0.8916000 0.8303000 36.71 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 110172346 rs5776989 T TG . PASS 0.8858000 0.7867000 0.9802000 0.6759000 0.8916000 0.8500000 37.0 70.0 16 488.56 7.14 87.50 0 87.50 0/1
chr1 110172362 rs2269341 C T . PASS 0.1203000 0.5447000 0.5119000 0.4145000 0.3579000 0.3634000 36.14 70.0 20 480.11 1.43 70.00 0 70.00 0/1
chr1 110173100 . C G . PASS 0.2504000 0.0951000 0.0496000 0.0825000 0.3262000 0.1695000 37.0 70.0 15 85.31 120.00 26.67 0 26.67 0/1
chr1 110173103 . T G . PASS 0.2504000 0.0951000 0.0496000 0.0825000 0.3262000 0.1695000 28.0 70.0 12 58.32 133.33 33.33 0 33.33 0/1
chr1 110173775 rs568686 G T . PASS 0.1233000 0.1282000 0.0446000 0.1720000 0.1636000 0.1258000 36.14 70.0 88 1000.00 0.87 47.73 0 47.73 0/1
chr1 110194255 rs686163 A G . PASS 0.5628000 0.7176000 0.6726000 0.5895000 0.5542000 0.6100000 35.91 70.0 11 411.98 0.00 100.00 0 100.00 1/1
chr1 110201580 rs650985 C T . PASS 0.9932000 0.9625000 1.0000000 0.9513000 0.9816000 0.9796000 36.62 70.0 69 1000.00 1.45 46.38 0 46.38 0/1
chr1 110201699 rs506008 T C . PASS 0.5681000 0.8732000 0.9702000 0.8598000 0.8517000 0.8053000 37.0 65.72 172 1000.00 1.38 47.09 0 47.09 0/1
chr1 110201809 rs562996 G T . PASS 0.8177000 0.8963000 0.9692000 0.8598000 0.8507000 0.8740000 37.0 69.83 49 818.39 7.31 48.98 0 48.98 0/1
chr1 110201812 rs563003 A G . PASS 0.8177000 0.8963000 0.9692000 0.8598000 0.8507000 0.8740000 36.04 69.84 49 840.28 5.06 51.02 0 51.02 0/1
chr1 110210780 rs530021 C G . PASS 0.8949000 0.9380000 0.9702000 0.8976000 0.8344000 0.9048000 36.57 69.98 111 1000.00 0.00 100.00 0 100.00 1/1
chr1 110210818 rs2073483 C T . PASS 0.1460000 0.5663000 0.6528000 0.3897000 0.3978000 0.4044000 33.7 70.0 68 1000.00 7.94 58.82 0 58.82 0/1
chr1 110211681 rs28623664 G C . PASS 0.8026000 0.3746000 0.3194000 0.5249000 0.4928000 0.5298000 37.0 63.25 72 80.83 33.33 11.11 0 11.11 0/1
chr1 110211835 rs402505 T C . PASS . . . . . . 37.0 59.6 19 119.19 6.32 26.32 0 26.32 0/1
chr1 110212293 rs3819350 C A . PASS 0.1097000 0.5447000 0.6498000 0.3489000 0.3405000 0.3718000 37.0 70.0 12 219.65 0.00 58.33 0 58.33 0/1
chr1 110230767 rs10857795 G A . PASS 0.8071000 0.9438000 0.9960000 0.9026000 0.8630000 0.8942000 36.6 69.22 90 1000.00 0.00 100.00 0 100.00 1/1
chr1 110231516 rs375176458 AC A . PASS . . . . . . 36.45 70.0 11 408.43 0.00 100.00 0 100.00 1/1
chr1 110231592 rs737497 T C . PASS 0.1445000 0.3790000 0.5347000 0.3310000 0.2474000 0.3131000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 110231777 rs4147565 G A . PASS 0.0333000 0.2795000 0.5079000 0.2972000 0.2290000 0.2542000 36.16 69.98 114 1000.00 0.00 100.00 0 100.00 1/1
chr1 110233138 rs74837985 G C . PASS 0.1445000 0.5865000 0.7778000 0.5427000 0.3926000 0.4617000 36.71 68.28 82 1000.00 0.00 100.00 0 100.00 1/1
chr1 110233247 rs11101983 T C . PASS 0.6324000 0.9251000 0.9891000 0.8837000 0.7761000 0.8233000 37.0 67.58 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 110255174 rs929166 T G . PASS 0.1225000 0.4380000 0.6865000 0.2793000 0.3384000 0.3534000 35.8 70.0 43 645.34 0.47 46.51 0 46.51 0/1
chr1 110255596 rs4970773 C G . PASS 0.0121000 0.4222000 0.6875000 0.2714000 0.3405000 0.3211000 35.5 69.62 13 246.40 9.62 61.54 0 61.54 0/1
chr1 110279701 rs7483 C T . PASS 0.0628000 0.4035000 0.7252000 0.2962000 0.4233000 0.3606000 37.0 70.0 77 1000.00 1.19 48.05 0 48.05 0/1
chr1 110279821 rs1537234 C A . PASS 0.1589000 0.5216000 0.8611000 0.4135000 0.5951000 0.4868000 35.91 70.0 15 365.69 14.55 73.33 0 73.33 0/1
chr1 110281941 rs10735234 G A . PASS 0.8835000 0.6599000 0.8601000 0.5547000 0.7127000 0.7484000 37.0 70.0 12 140.26 0.00 41.67 0 41.67 0/1
chr1 110282972 rs1332018 G T . PASS 0.8638000 0.6556000 0.8611000 0.5507000 0.7096000 0.7414000 35.4 70.0 31 472.61 3.01 48.39 0 48.39 0/1
chr1 110292856 rs15864 G C . PASS 0.0182000 0.3919000 0.7440000 0.3002000 0.4029000 0.3478000 37.0 70.0 15 127.08 26.67 33.33 0 33.33 0/1
chr1 110295772 rs1887547 T C . PASS 0.9123000 0.6816000 0.8601000 0.5795000 0.7444000 0.7702000 36.66 70.0 68 1000.00 11.68 51.47 0 51.47 0/1
chr1 110295890 rs1887548 C G . PASS 0.9062000 0.6787000 0.8591000 0.5746000 0.7454000 0.7672000 36.14 70.0 18 481.98 1.59 77.78 0 77.78 0/1
chr1 110300441 rs3818562 G A . PASS 0.1596000 0.4366000 0.7907000 0.4712000 0.5982000 0.4732000 36.6 70.0 91 1000.00 0.00 100.00 0 100.00 1/1
chr1 110300504 rs10776700 A G . PASS 1.0000000 0.9885000 1.0000000 0.9712000 0.9990000 0.9924000 36.5 70.0 120 1000.00 0.00 100.00 0 100.00 1/1
chr1 110301766 . AG A . PASS . . . . . . 33.71 70.0 46 1000.00 0.12 76.09 1 76.09 0/1
chr1 110301766 . AGTGTGT A . PASS . . . . . . 32.91 70.0 48 227.93 9.09 22.92 1 75.00 0/1
chr1 110301766 . AGTGTGT AGT . PASS . . . . . . . . 48 227.93 5.88 35.42 1 75.00 0/1
chr1 110301767 . GT G . PASS . . . . . . 33.71 70.0 46 1000.00 0.12 76.09 1 76.09 0/1
chr1 110466338 rs333970 C A . PASS 0.1067000 0.5749000 0.4018000 0.6213000 0.5971000 0.4301000 36.78 70.0 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 110466709 rs333971 T C . PASS 0.9887000 0.9986000 1.0000000 1.0000000 1.0000000 0.9968000 36.56 70.0 108 1000.00 0.00 100.00 0 100.00 1/1
chr1 110467745 rs333972 A G . PASS 0.9887000 0.9986000 1.0000000 1.0000000 1.0000000 0.9968000 36.66 70.0 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 110581780 rs1834 T G . PASS 0.1921000 0.3357000 0.3403000 0.1759000 0.4959000 0.2979000 37.0 68.33 34 362.28 17.65 35.29 0 35.29 0/1
chr1 110583335 rs72687299 G A . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 69.09 63 696.85 0.72 34.92 0 34.92 0/1
chr1 110612925 rs2274568 G A . PASS 0.7413000 0.6527000 0.7679000 0.5527000 0.7249000 0.6933000 36.14 70.0 51 959.58 7.00 54.90 0 54.90 0/1
chr1 110709718 rs35600013 ATG ACA . PASS . . . . . . 35.71 70.0 54 947.60 3.70 51.85 1 53.70 0/1
chr1 110709719 rs7527375 T C . PASS 0.4652000 0.3530000 0.2143000 0.5249000 0.3722000 0.3930000 36.14 70.0 46 974.63 4.35 60.87 1 60.87 0/1
chr1 110709720 rs12737742 G A . PASS 0.0333000 0.2608000 0.2143000 0.4652000 0.3517000 0.2502000 35.29 70.0 47 947.60 3.50 59.57 1 59.57 0/1
chr1 110738296 rs2784140 G A . PASS 0.0439000 0.3847000 0.3016000 0.4543000 0.3732000 0.2897000 36.52 70.0 101 1000.00 0.00 100.00 0 100.00 1/1
chr1 110740273 rs2603581 G T . PASS 0.1399000 0.3934000 0.3056000 0.4513000 0.3732000 0.3165000 36.28 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 110740688 rs2761445 C T . PASS 0.1399000 0.4020000 0.3056000 0.4583000 0.3753000 0.3195000 37.0 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 110882444 rs814771 A G . PASS 0.9516000 0.8545000 0.7738000 0.6879000 0.8160000 0.8229000 36.47 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 110924235 rs12120542 T C . PASS 0.0053000 0.1066000 0.0000000 0.1083000 0.0266000 0.0431000 36.17 70.0 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 110930441 rs111878697 T TTTCTAGGGGGAAAATGAGATTCCCCTAAAATAACATA . PASS 0.6127000 0.6700000 0.5139000 0.5209000 0.5327000 0.5667000 36.45 70.0 25 962.17 8.35 92.00 0 100.00 1/1
chr1 110950439 rs6674775 C T . PASS 0.3056000 0.3790000 0.2758000 0.4453000 0.4366000 0.3634000 35.81 70.0 91 1000.00 0.00 100.00 0 100.00 1/1
chr1 111059812 . CG C . PASS . . . . . . 37.0 70.0 11 91.94 45.45 36.36 1 36.36 0/1
chr1 111059812 rs368922210 CGA C . PASS . . . . . . 37.0 70.0 13 88.93 38.46 30.77 1 30.77 0/1
chr1 111060669 rs1281175 T C . PASS 0.5144000 0.7839000 0.5853000 0.7336000 0.5869000 0.6242000 36.56 70.0 57 911.76 2.34 47.37 0 47.37 0/1
chr1 111061062 rs1281174 T C . PASS 0.5144000 0.7839000 0.5853000 0.7336000 0.5869000 0.6242000 36.52 69.2 57 828.23 14.74 43.86 0 43.86 0/1
chr1 111136611 rs17026168 G A . PASS 0.0537000 0.2147000 0.4792000 0.0696000 0.2004000 0.1935000 37.0 70.0 18 414.59 16.67 66.67 0 66.67 0/1
chr1 111144526 rs4839071 T G . PASS 0.9962000 0.9986000 1.0000000 1.0000000 1.0000000 0.9988000 35.91 70.0 11 407.83 0.00 100.00 0 100.00 1/1
chr1 111144661 rs12407942 A G . PASS 0.1377000 0.3473000 0.3879000 0.0706000 0.1994000 0.2157000 37.0 69.35 62 1000.00 3.23 50.00 0 50.00 0/1
chr1 111276576 rs343613 C T . PASS 0.4894000 0.5476000 0.3750000 0.5179000 0.5266000 0.4874000 35.15 70.0 106 1000.00 13.79 49.06 0 49.06 0/1
chr1 111276629 rs343614 G A . PASS 0.4380000 0.5432000 0.3720000 0.5179000 0.5266000 0.4726000 35.8 70.0 115 1000.00 1.01 52.17 0 52.17 0/1
chr1 111391381 rs6685507 A G . PASS 0.1725000 0.2997000 0.1161000 0.2843000 0.3006000 0.2262000 36.52 69.0 39 882.39 14.56 64.10 0 64.10 0/1
chr1 111391513 rs12750061 C T . PASS 0.1059000 0.2968000 0.1181000 0.2843000 0.2996000 0.2085000 36.57 69.93 48 980.61 0.60 58.33 0 58.33 0/1
chr1 111391579 rs12731526 A G . PASS 0.1074000 0.2968000 0.1161000 0.2843000 0.3006000 0.2087000 36.37 69.89 36 640.80 14.62 52.78 0 52.78 0/1
chr1 111436856 rs71483878 CTC CGT . PASS . . . . . . 37.0 70.0 10 104.51 10.00 40.00 0 40.00 0/1
chr1 111441829 rs1803259 C T . PASS 0.3169000 0.7349000 0.5010000 0.7614000 0.6012000 0.5567000 36.31 70.0 60 1000.00 10.48 58.33 0 58.33 0/1
chr1 111661413 rs325916 T C . PASS 0.6407000 0.4193000 0.2827000 0.3827000 0.5910000 0.4764000 35.15 70.0 75 779.79 9.03 34.67 0 34.67 0/1
chr1 111661528 rs325917 T C . PASS 0.4682000 0.2536000 0.2808000 0.1521000 0.4233000 0.3285000 36.25 70.0 52 1000.00 1.92 61.54 0 61.54 0/1
chr1 111726026 rs2243393 G A . PASS 0.6120000 0.5980000 0.3105000 0.3588000 0.5593000 0.4882000 37.0 70.0 17 334.06 12.94 58.82 0 58.82 0/1
chr1 111726213 rs694180 A G . PASS 0.8548000 0.7954000 0.6458000 0.6431000 0.8190000 0.7550000 36.61 70.0 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 111726288 rs2275122 T G . PASS 0.0794000 0.3545000 0.1349000 0.0934000 0.3425000 0.1829000 37.0 70.0 10 100.36 0.00 40.00 0 40.00 0/1
chr1 111726869 rs3795823 G A . PASS 0.0257000 0.1787000 0.3294000 0.2823000 0.1779000 0.1893000 36.5 70.0 67 756.34 3.86 35.82 0 35.82 0/1
chr1 111737183 rs660173 C T . PASS 0.8457000 0.8026000 0.6597000 0.6680000 0.8528000 0.7680000 36.73 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 111737398 rs9970286 G A . PASS 0.3071000 0.2248000 0.3760000 0.3429000 0.2413000 0.3039000 37.0 70.0 14 217.78 0.00 50.00 0 50.00 0/1
chr1 111739771 rs6143371,rs3833538 G GCAGGACAAA . PASS 0.7224000 0.6383000 0.5853000 0.4225000 0.6063000 0.6002000 36.68 70.0 65 1000.00 1.73 98.46 0 100.00 1/1
chr1 111741322 rs35184750 G A . PASS 0.0000000 0.0130000 0.0000000 0.0209000 0.0031000 0.0065895 36.66 70.0 131 1000.00 0.02 53.44 0 53.44 0/1
chr1 111770423 rs755467 T G . PASS 0.6657000 0.6830000 0.6716000 0.6978000 0.7434000 0.6909000 35.94 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 111773568 rs2255089 G C . PASS 0.2542000 0.3329000 0.5575000 0.4513000 0.4550000 0.4050000 35.36 70.0 40 725.91 6.36 55.00 0 55.00 0/1
chr1 111773830 rs2147789 A T . PASS 0.2806000 0.3343000 0.5565000 0.4513000 0.4519000 0.4113000 37.0 67.78 20 279.11 11.11 45.00 0 45.00 0/1
chr1 111778187 rs2251715 A G . PASS 0.0772000 0.2997000 0.5585000 0.4225000 0.4213000 0.3415000 37.0 70.0 11 101.50 36.36 36.36 0 36.36 0/1
chr1 111778241 rs2764544 C T . PASS 0.8608000 0.9870000 1.0000000 0.9990000 1.0000000 0.9613000 35.45 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 111778824 rs2251608 T C . PASS 0.5287000 0.6628000 0.6756000 0.6740000 0.7382000 0.6470000 34.75 68.75 16 596.81 0.00 100.00 0 100.00 1/1
chr1 111783982 rs13721 C A . PASS 0.0507000 0.2493000 0.1974000 0.3330000 0.2372000 0.1903000 36.59 70.0 58 1000.00 0.75 63.79 0 100.00 0/1
chr1 111783982 rs13721 C T . PASS 0.0507000 0.2493000 0.1974000 0.3330000 0.2372000 0.1903000 36.59 70.0 58 1000.00 1.31 36.21 0 100.00 0/1
chr1 111783996 rs2494007 A G . PASS 0.9977000 1.0000000 1.0000000 1.0000000 1.0000000 0.9994000 37.0 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 111784138 rs942694 T C . PASS 0.0507000 0.1744000 0.1974000 0.3330000 0.2372000 0.1905000 37.0 70.0 12 140.27 10.00 41.67 0 41.67 0/1
chr1 111784816 rs11102221 G A . PASS 0.3699000 0.3429000 0.1171000 0.2425000 0.3180000 0.2796000 36.65 70.0 87 1000.00 5.00 39.08 0 39.08 0/1
chr1 111826055 rs12140873 A G . PASS 0.0946000 0.1196000 0.0179000 0.2038000 0.1513000 0.1156000 36.2 63.07 36 473.72 1.11 41.67 0 41.67 0/1
chr1 111853174 rs56387509 C T . PASS 0.0234000 0.0677000 0.0228000 0.1382000 0.0900000 0.0655000 36.14 68.57 17 489.14 3.36 82.35 0 82.35 0/1
chr1 111854207 rs4839122 T C . PASS 0.5522000 0.8084000 0.8442000 0.6829000 0.6237000 0.6867000 37.0 70.0 10 271.59 10.00 80.00 0 80.00 0/1
chr1 111854223 rs6537695 C T . PASS 0.3381000 0.7262000 0.8442000 0.5736000 0.5266000 0.5779000 37.0 70.0 10 271.59 15.00 80.00 0 80.00 0/1
chr1 111854755 rs4423003 A C . PASS 0.8525000 0.9798000 1.0000000 0.9990000 1.0000000 0.9581000 36.14 70.0 14 533.14 0.00 100.00 0 100.00 1/1
chr1 111857154 rs2786152 T C . PASS 0.7867000 0.4236000 0.4772000 0.7097000 0.7720000 0.6558000 36.2 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 111857276 rs41391244 T C . PASS 0.2201000 0.1484000 0.1161000 0.2366000 0.2372000 0.1959000 37.0 70.0 33 536.52 2.65 48.48 0 48.48 0/1
chr1 111857951 rs61756687 A G . PASS 0.0234000 0.0677000 0.0228000 0.1382000 0.0930000 0.0661000 36.77 69.42 108 1000.00 1.82 49.07 0 49.07 0/1
chr1 111861714 rs2786161 T A . PASS 0.6929000 0.4135000 0.4732000 0.6948000 0.7607000 0.6236000 35.8 70.0 20 771.75 0.00 100.00 0 100.00 1/1
chr1 111861841 rs2275253 A G . PASS 0.7958000 0.4251000 0.4802000 0.7107000 0.7720000 0.6591000 36.32 70.0 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 111861974 rs2275254 T C . PASS 0.3154000 0.3098000 0.3800000 0.5954000 0.6145000 0.4423000 36.5 70.0 96 1000.00 0.00 100.00 0 100.00 1/1
chr1 111862952 rs2256721 T G . PASS 0.7897000 0.4236000 0.4812000 0.7097000 0.7720000 0.6573000 36.55 69.75 82 1000.00 0.12 97.56 0 97.56 1/1
chr1 111866640 rs6690266 C A . PASS 0.0923000 0.1902000 0.3780000 0.4016000 0.4407000 0.2935000 37.0 69.82 46 743.88 8.70 47.83 0 47.83 0/1
chr1 111890240 rs142260201 C CT . PASS . . . . . . 37.0 70.0 30 154.08 44.76 23.33 0 23.33 0/1
chr1 111890244 rs3738305 C T . PASS 0.7088000 0.3329000 0.5377000 0.4672000 0.6002000 0.5525000 37.0 70.0 26 229.48 11.54 30.77 0 38.46 0/1
chr1 111931251 rs7513731 C A . PASS 0.4939000 0.6110000 0.4177000 0.4284000 0.3855000 0.4605000 36.27 70.0 105 1000.00 3.54 46.67 0 46.67 0/1
chr1 112020222 rs3831358 GC G . PASS 0.0000000 0.0000000 0.0000000 0.0000000 0.0010000 0.0001997 35.42 69.35 32 1000.00 1.81 96.88 1 96.88 1/1
chr1 112020222 . GCC GA . PASS . . . . . . . . 31 1000.00 1.72 96.77 1 96.77 1/1
chr1 112020224 rs115634476 C A . PASS . . . . . . 35.76 69.31 30 1000.00 1.84 96.67 1 96.67 1/1
chr1 112020238 rs2211494 A C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.16 69.53 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 112029193 rs2252739 A G . PASS 0.7405000 0.8631000 0.7887000 0.8400000 0.7587000 0.7907000 36.56 69.63 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 112029325 rs2800906 A G . PASS 0.7368000 0.8588000 0.7887000 0.8360000 0.7566000 0.7879000 37.0 70.0 19 758.16 0.00 100.00 0 100.00 1/1
chr1 112033456 rs3831359 G GA . PASS 0.2965000 0.7277000 0.5139000 0.6312000 0.5348000 0.5138000 36.14 70.0 11 396.39 0.00 100.00 0 100.00 1/1
chr1 112042632 rs2229155 A G . PASS 0.7352000 0.8602000 0.7579000 0.8340000 0.7178000 0.7736000 36.82 70.0 68 1000.00 0.00 100.00 0 100.00 1/1
chr1 112106444 rs1591712 G A . PASS 0.8230000 0.9222000 0.9474000 0.9115000 0.9008000 0.8948000 37.0 70.0 42 885.37 0.76 59.52 0 59.52 0/1
chr1 112263216 rs6698691 G A . PASS 0.3820000 0.4207000 0.4325000 0.4791000 0.5010000 0.4403000 36.78 70.0 122 1000.00 4.49 44.26 0 44.26 0/1
chr1 112269872 rs197434 G A . PASS 0.9607000 0.7464000 0.8254000 0.8191000 0.8855000 0.8606000 36.51 70.0 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 112298582 rs197392 A G . PASS 0.5666000 0.1470000 0.0367000 0.1978000 0.1299000 0.2424000 36.61 70.0 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 112298829 rs197393 T C . PASS 0.7254000 0.5014000 0.3403000 0.4105000 0.3088000 0.4722000 35.63 69.24 79 1000.00 0.00 100.00 0 100.00 1/1
chr1 112302219 rs538779 G A . PASS 0.1135000 0.2622000 0.2143000 0.2227000 0.1728000 0.1879000 37.0 70.0 43 548.19 0.82 39.53 0 39.53 0/1
chr1 112303260 rs169093 A G . PASS 0.3064000 0.0821000 0.0030000 0.1173000 0.0706000 0.1302000 37.0 70.0 54 932.79 3.70 50.00 0 50.00 0/1
chr1 112308953 rs197412 T C . PASS 0.7247000 0.5072000 0.3403000 0.4185000 0.3088000 0.4744000 36.05 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 112308972 rs197413 G A . PASS 0.7428000 0.5115000 0.3403000 0.4185000 0.3088000 0.4798000 36.41 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 112309123 rs197414 C A . PASS 0.4274000 0.0965000 0.0030000 0.1252000 0.0716000 0.1659000 37.0 70.0 30 207.25 13.33 26.67 0 26.67 0/1
chr1 112309331 rs85276 T C . PASS 0.4274000 0.0965000 0.0030000 0.1252000 0.0716000 0.1659000 36.45 70.0 48 729.99 9.09 45.83 0 45.83 0/1
chr1 112321032 rs640029 T A . PASS 0.3865000 0.1340000 0.0367000 0.1958000 0.1299000 0.1927000 36.49 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 112991698 rs2256883 T C . PASS 0.3238000 0.5692000 0.4464000 0.6600000 0.7096000 0.5254000 36.56 70.0 104 1000.00 7.26 51.92 0 51.92 0/1
chr1 112991862 rs3818729 G T . PASS 0.0923000 0.3184000 0.5536000 0.2008000 0.2290000 0.2650000 37.0 70.0 21 234.33 15.48 38.10 0 38.10 0/1
chr1 112999227 rs1175641 G A . PASS 0.9561000 0.9366000 1.0000000 0.8608000 0.9387000 0.9397000 35.58 70.0 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 113052155 rs3790605 C G . PASS 0.0908000 0.3314000 0.3968000 0.3320000 0.2270000 0.2608000 36.2 70.0 30 487.63 6.67 50.00 0 50.00 0/1
chr1 113052186 rs3790606 G C . PASS 0.0900000 0.3300000 0.3988000 0.3320000 0.2270000 0.2608000 37.0 70.0 15 252.40 1.67 53.33 0 53.33 0/1
chr1 113063125 rs910697 A G . PASS 0.5371000 0.4438000 0.6151000 0.4612000 0.3262000 0.4834000 37.0 69.13 59 750.66 7.52 38.98 0 38.98 0/1
chr1 113068577 rs35147679 C T . PASS 0.0628000 0.2767000 0.4266000 0.2266000 0.2086000 0.2270000 37.0 70.0 16 211.76 51.79 43.75 0 43.75 0/1
chr1 113140583 rs12049572 T C . PASS 0.0620000 0.2781000 0.4266000 0.2256000 0.2106000 0.2272000 37.0 69.17 53 810.49 11.79 45.28 0 45.28 0/1
chr1 113196196 rs66520135 TA T . PASS 0.0991000 0.1484000 0.2222000 0.1183000 0.1442000 0.1434000 35.0 70.0 22 730.03 2.02 81.82 0 100.00 0/1
chr1 113196197 rs2932528 A T . PASS 0.7625000 0.7291000 0.6756000 0.6332000 0.7536000 0.7127000 35.0 70.0 22 730.03 9.09 18.18 0 100.00 0/1
chr1 113202417 rs2932536 G A . PASS 0.5204000 0.5720000 0.3720000 0.5129000 0.6524000 0.5220000 37.0 70.0 42 425.89 14.29 33.33 0 33.33 0/1
chr1 113234179 rs3795819 C T . PASS 0.1672000 0.2911000 0.5387000 0.2346000 0.2249000 0.2839000 37.0 70.0 10 104.51 20.00 40.00 0 40.00 0/1
chr1 113234456 rs2932532 G A . PASS 0.5030000 0.5720000 0.3710000 0.5119000 0.6656000 0.5196000 36.0 70.0 33 357.43 28.79 36.36 0 36.36 0/1
chr1 113236534 rs1110042 A T . PASS 0.1672000 0.2911000 0.5427000 0.2346000 0.2249000 0.2847000 35.8 70.0 20 308.88 20.00 50.00 0 50.00 0/1
chr1 113236681 rs3748656 C T . PASS 0.1672000 0.2911000 0.5427000 0.2346000 0.2249000 0.2847000 36.74 70.0 91 1000.00 7.34 51.65 0 51.65 0/1
chr1 113237171 rs883593 A G . PASS 0.1672000 0.2911000 0.5427000 0.2346000 0.2249000 0.2847000 37.0 69.6 89 1000.00 10.11 56.18 0 56.18 0/1
chr1 113239382 rs17030651 G A . PASS 0.0787000 0.2810000 0.4425000 0.2346000 0.1984000 0.2346000 36.52 70.0 76 1000.00 1.26 65.79 0 65.79 0/1
chr1 113239478 rs2999158 T C . PASS 0.8767000 0.8458000 0.8442000 0.6660000 0.7883000 0.8063000 36.73 70.0 83 1000.00 1.48 53.01 0 53.01 0/1
chr1 113240790 rs12133583 G T . PASS 0.1679000 0.2911000 0.5417000 0.2346000 0.2249000 0.2847000 34.82 70.0 26 320.58 1.40 42.31 0 42.31 0/1
chr1 113241052 rs2306940 T C . PASS 0.1762000 0.2911000 0.5417000 0.2346000 0.2260000 0.2871000 36.05 70.0 83 1000.00 11.54 45.78 0 45.78 0/1
chr1 113242488 rs3013431 C T . PASS 0.5053000 0.6196000 0.3690000 0.5984000 0.6759000 0.5457000 36.14 70.0 28 456.03 21.43 50.00 0 50.00 0/1
chr1 113242978 rs72701120 G T . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 36.37 70.0 104 1000.00 1.08 54.81 0 54.81 0/1
chr1 113243048 rs6679 C T . PASS 0.1702000 0.2911000 0.5407000 0.2346000 0.2188000 0.2839000 37.0 70.0 69 1000.00 13.38 49.28 0 49.28 0/1
chr1 113244356 . G A . PASS . . . . . . 37.0 70.0 26 56.35 23.08 15.38 0 15.38 0/1
chr1 113246229 rs937053 T A . PASS 0.4349000 0.4193000 0.3026000 0.5457000 0.6636000 0.4730000 37.0 70.0 32 451.84 0.00 43.75 0 43.75 0/1
chr1 113246506 rs2306937 C T . PASS 0.0628000 0.2781000 0.4425000 0.2346000 0.1922000 0.2288000 35.5 70.0 13 250.55 19.23 61.54 0 61.54 0/1
chr1 113249085 rs370899656 AC A . PASS . . . . . . 35.67 62.67 15 276.74 13.33 60.00 0 60.00 0/1
chr1 113252851 rs138165734 CTTG C . PASS 0.0030000 0.0115000 0.0000000 0.0209000 0.0041000 0.0073882 35.91 70.0 64 1000.00 5.35 70.31 0 70.31 0/1
chr1 113255212 rs12137976 G T . PASS 0.5045000 0.4337000 0.6230000 0.3986000 0.2178000 0.4413000 37.0 70.0 13 300.19 25.64 69.23 0 69.23 0/1
chr1 113255389 rs10857971 C T . PASS 0.8835000 0.9899000 1.0000000 1.0000000 1.0000000 0.9679000 36.12 70.0 137 1000.00 0.00 100.00 0 100.00 1/1
chr1 113255686 rs147819439,rs36095892 T TTG . PASS . . . . . . 35.36 70.0 11 282.76 8.08 81.82 0 81.82 0/1
chr1 113290922 rs11102529 C G . PASS 0.5832000 0.9625000 1.0000000 0.9990000 1.0000000 0.8846000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 113460676 . CA C . PASS . . . . . . 35.68 70.0 32 630.27 13.82 59.38 1 59.38 0/1
chr1 113460676 . CAATAAATA CAATA . PASS . . . . . . . . 32 318.13 37.50 25.00 1 59.38 0/1
chr1 113460676 rs199817200 CAATAAATA C . PASS . . . . . . 36.45 70.0 32 318.13 3.41 34.38 1 59.38 0/1
chr1 113460677 . AA A . PASS . . . . . . 35.68 70.0 32 630.27 13.82 59.38 1 59.38 0/1
chr1 113460678 . AT A . PASS . . . . . . 35.68 70.0 32 630.27 13.82 59.38 1 59.38 0/1
chr1 113460679 . TA T . PASS . . . . . . 35.68 70.0 31 633.28 10.19 61.29 1 61.29 0/1
chr1 113616382 rs56062000 G GA . PASS 0.1165000 0.5432000 0.3095000 0.6014000 0.5225000 0.3912000 37.0 70.0 10 366.64 0.00 100.00 0 100.00 1/1
chr1 113636924 rs1216802 T C . PASS 0.5045000 0.9524000 0.9514000 0.9891000 0.9836000 0.8474000 37.0 70.0 19 758.16 0.00 100.00 0 100.00 1/1
chr1 113657092 rs1216793 A C . PASS 0.7027000 0.9669000 0.9504000 0.9891000 0.9847000 0.9018000 36.74 70.0 91 1000.00 0.00 100.00 0 100.00 1/1
chr1 113658887 rs1216791 G A . PASS 0.5408000 0.7939000 0.9266000 0.8539000 0.9172000 0.7899000 36.52 70.0 46 861.33 6.26 54.35 0 54.35 0/1
chr1 113659065 rs10541977 ACT A . PASS 0.5408000 0.7939000 0.9266000 0.8539000 0.9172000 0.7899000 36.83 70.0 67 1000.00 0.60 52.24 0 52.24 0/1
chr1 113711956 rs17031158 A G . PASS 0.0983000 0.1671000 0.0238000 0.1322000 0.0675000 0.0937000 37.0 70.0 17 250.53 5.88 47.06 0 47.06 0/1
chr1 113711973 rs17031160 G C . PASS 0.0983000 0.1671000 0.0238000 0.1322000 0.0675000 0.0937000 37.0 70.0 11 139.12 10.91 45.45 0 45.45 0/1
chr1 113933570 rs12568854 G A . PASS 0.0151000 0.3026000 0.5972000 0.1779000 0.1319000 0.2260000 35.0 70.0 17 154.97 35.29 35.29 0 35.29 0/1
chr1 113992475 rs12025806 C T . PASS 0.0182000 0.2983000 0.6022000 0.1750000 0.1309000 0.2280000 37.0 62.84 101 1000.00 3.69 36.63 0 36.63 0/1
chr1 113993175 rs7518586 C T . PASS 0.9796000 0.9424000 0.9881000 0.9364000 0.9479000 0.9613000 36.43 68.08 106 1000.00 0.00 100.00 0 100.00 1/1
chr1 114196495 rs2359173 A G . PASS 0.0098000 0.2032000 0.0933000 0.3270000 0.4049000 0.1943000 36.14 70.0 101 1000.00 0.57 55.45 0 55.45 0/1
chr1 114240319 rs3835263 T TA . PASS 0.8540000 0.5778000 0.3631000 0.7406000 0.7720000 0.6781000 36.66 70.0 52 1000.00 6.95 59.62 0 59.62 0/1
chr1 114242250 rs3752953 C T . PASS 0.1067000 0.1830000 0.0794000 0.3002000 0.3650000 0.2011000 37.0 70.0 16 169.99 8.33 37.50 0 37.50 0/1
chr1 114249382 rs6698586 C T . PASS 0.8351000 0.5735000 0.3958000 0.7406000 0.7730000 0.6793000 37.0 70.0 20 325.04 0.00 50.00 0 50.00 0/1
chr1 114267347 rs1230640 C T . PASS 0.9244000 0.5778000 0.3958000 0.7406000 0.7730000 0.7035000 37.0 68.1 39 727.32 5.13 53.85 0 53.85 0/1
chr1 114280717 rs2273758 A C . PASS 0.7708000 0.4755000 0.1667000 0.6014000 0.6830000 0.5571000 35.86 70.0 40 696.14 1.19 52.50 0 52.50 0/1
chr1 114339956 rs34169583,rs3838298 C CTAAA . PASS 0.9160000 0.5749000 0.3968000 0.7406000 0.7751000 0.7015000 36.18 70.0 29 349.90 21.26 41.38 0 41.38 0/1
chr1 114377093 rs1599971 A G . PASS 0.9168000 0.5735000 0.3948000 0.7406000 0.7761000 0.7013000 37.0 70.0 22 277.24 25.25 40.91 0 40.91 0/1
chr1 114377568 rs2476601 A G . PASS 0.9970000 0.9640000 1.0000000 0.9056000 0.9867000 0.9726000 35.91 70.0 67 1000.00 1.40 98.51 0 98.51 1/1
chr1 114401231 rs1217418 A G . PASS 0.6800000 0.4179000 0.1706000 0.5527000 0.6789000 0.5154000 34.33 70.0 18 265.26 0.00 50.00 0 50.00 0/1
chr1 114401904 rs1217419 T G . PASS 0.6672000 0.4179000 0.1706000 0.5527000 0.6789000 0.5120000 36.29 70.0 29 574.18 17.04 58.62 0 58.62 0/1
chr1 114424601 rs1217381 C T . PASS 1.0000000 1.0000000 1.0000000 0.9970000 1.0000000 0.9994000 36.85 70.0 80 1000.00 0.00 100.00 0 100.00 1/1
chr1 114515717 rs2358996 G A . PASS 0.5469000 0.4366000 0.5238000 0.4314000 0.4571000 0.4862000 36.12 70.0 91 1000.00 3.54 45.05 0 45.05 0/1
chr1 114522285 rs12728679 A G . PASS 0.0030000 0.0331000 0.0000000 0.0765000 0.0102000 0.0228000 37.0 70.0 32 372.47 8.33 37.50 0 37.50 0/1
chr1 114596480 rs11102724 C T . PASS 0.3835000 0.6585000 0.5476000 0.6958000 0.5481000 0.5495000 36.61 70.0 118 1000.00 8.20 51.69 0 51.69 0/1
chr1 114641685 rs2774285 A G . PASS 0.9652000 0.7392000 0.9325000 0.7396000 0.8415000 0.8578000 36.14 70.0 33 440.99 13.42 42.42 0 42.42 0/1
chr1 114680540 rs17032441 C T . PASS 0.2247000 0.1628000 0.2579000 0.2078000 0.1646000 0.2077000 36.38 70.0 79 1000.00 6.36 49.37 0 49.37 0/1
chr1 114680745 rs11102739 C A . PASS 0.0635000 0.0965000 0.0000000 0.1342000 0.0808000 0.0729000 37.0 70.0 11 180.89 15.15 54.55 0 54.55 0/1
chr1 114940632 rs5777192 CA C . PASS . . . . . . 36.71 70.0 22 784.39 3.46 95.45 0 95.45 1/1
chr1 114948281 rs6537825 A G . PASS 0.9803000 0.8012000 0.5823000 0.9364000 0.9284000 0.8564000 36.8 69.67 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 114976224 rs12132214 A C . PASS 0.0061000 0.0836000 0.0010000 0.1491000 0.0317000 0.0495000 36.14 70.0 33 436.83 6.93 42.42 0 42.42 0/1
chr1 115078547 rs2878745 T C . PASS 0.4592000 0.5447000 0.5139000 0.6103000 0.4468000 0.5100000 37.0 69.88 16 632.84 0.00 100.00 0 100.00 1/1
chr1 115078549 rs12034144 G A . PASS 0.0862000 0.2248000 0.4772000 0.1481000 0.1074000 0.2007000 37.0 70.0 16 128.23 17.50 31.25 0 31.25 0/1
chr1 115078685 rs2137365 G C . PASS . . . . . . 36.29 70.0 43 532.04 17.51 39.53 0 39.53 0/1
chr1 115080517 rs6674801 G A . PASS 0.4569000 0.4914000 0.1825000 0.5606000 0.3528000 0.4069000 36.29 70.0 17 662.60 0.00 100.00 0 100.00 1/1
chr1 115110683 rs8128 A C . PASS 0.4788000 0.4813000 0.4990000 0.5229000 0.3661000 0.4700000 37.0 70.0 11 419.85 0.00 100.00 0 100.00 1/1
chr1 115119392 rs41274118 T C . PASS 0.0129000 0.2176000 0.4831000 0.1332000 0.0716000 0.1715000 36.25 70.0 31 530.54 14.92 51.61 0 51.61 0/1
chr1 115144304 rs12730318 C T . PASS 0.0182000 0.1441000 0.0020000 0.2873000 0.1616000 0.1144000 37.0 70.0 11 310.35 10.10 81.82 0 81.82 0/1
chr1 115144703 rs28398 A G . PASS 0.9992000 0.9971000 1.0000000 0.9970000 0.9980000 0.9984000 37.0 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 115161140 rs12145066 C T . PASS 0.0182000 0.1455000 0.0020000 0.2883000 0.1616000 0.1148000 35.5 70.0 15 244.53 8.33 53.33 0 53.33 0/1
chr1 115168600 rs7541738 A T . PASS 0.0182000 0.1441000 0.0020000 0.2863000 0.1616000 0.1142000 35.36 70.0 46 707.84 9.88 47.83 0 47.83 0/1
chr1 115236057 rs17602729 G A . PASS 0.0045000 0.0576000 0.0010000 0.1233000 0.0204000 0.0381000 37.0 70.0 43 339.35 2.33 27.91 0 27.91 0/1
chr1 115262124 rs72687876 G A . PASS 0.1172000 0.1484000 0.0248000 0.2485000 0.2280000 0.1510000 37.0 70.0 11 101.50 31.82 36.36 0 36.36 0/1
chr1 115284056 rs7537232 G T . PASS 0.4395000 0.1931000 0.0238000 0.2594000 0.2301000 0.2446000 37.0 70.0 12 136.12 16.67 41.67 0 41.67 0/1
chr1 115398044 rs60659641 GC G . PASS 0.9992000 1.0000000 1.0000000 1.0000000 1.0000000 0.9998000 35.88 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 115399884 rs17544210 C G . PASS 0.0749000 0.0519000 0.0159000 0.0686000 0.0562000 0.0383000 37.0 68.95 40 636.62 10.79 47.50 0 47.50 0/1
chr1 115399940 rs360614 T G . PASS 0.1611000 0.3516000 0.5258000 0.4076000 0.2658000 0.3309000 37.0 68.89 33 615.92 3.03 54.55 0 54.55 0/1
chr1 115417093 rs7518392 A C . PASS 0.0333000 0.0749000 0.0159000 0.0795000 0.0573000 0.0495000 35.5 70.0 21 222.32 16.67 38.10 0 38.10 0/1
chr1 115420905 rs360636 T C . PASS 0.1823000 0.3516000 0.5129000 0.4066000 0.2638000 0.3333000 37.0 70.0 16 170.00 0.00 37.50 0 37.50 0/1
chr1 115576023 rs10776792 A G . PASS 1.0000000 0.9942000 1.0000000 0.9622000 0.9591000 0.9836000 36.58 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 115600081 rs3820630 G C . PASS 0.1974000 0.0821000 0.0149000 0.0755000 0.0542000 0.0923000 36.25 70.0 23 550.47 7.07 69.57 0 69.57 0/1
chr1 115600137 rs3738704 A G . PASS 0.2057000 0.0865000 0.0169000 0.0755000 0.0634000 0.0972000 36.65 70.0 53 1000.00 6.10 64.15 0 64.15 0/1
chr1 115601528 rs3738702 C G . PASS 0.1974000 0.0865000 0.0169000 0.0746000 0.0624000 0.0946000 36.57 70.0 71 907.23 4.23 39.44 0 39.44 0/1
chr1 115601615 rs7523818 A G . PASS 0.9985000 0.9640000 1.0000000 0.8986000 0.9560000 0.9657000 35.71 70.0 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 115602498 rs6537852 C G . PASS 0.9395000 0.9553000 1.0000000 0.9006000 0.9571000 0.9495000 36.65 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 115602606 rs12082966 C G . PASS 0.0658000 0.0764000 0.0169000 0.0746000 0.0624000 0.0585000 35.24 70.0 76 1000.00 7.70 53.95 0 53.95 0/1
chr1 115604681 rs11102881 A G . PASS 0.3018000 0.3343000 0.4921000 0.3012000 0.1769000 0.3201000 37.0 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 115604798 rs10776795 C T . PASS 0.3018000 0.3343000 0.4921000 0.3012000 0.1769000 0.3201000 36.52 69.52 125 1000.00 0.00 100.00 0 100.00 1/1
chr1 115615358 rs753189 T C . PASS 0.4387000 0.2608000 0.0784000 0.3032000 0.2157000 0.2708000 37.0 70.0 10 104.51 0.00 40.00 0 40.00 0/1
chr1 115631924 rs4240540 C T . PASS 0.9622000 0.9928000 1.0000000 0.9622000 0.9571000 0.9730000 36.48 69.13 23 913.22 0.00 100.00 0 100.00 1/1
chr1 115829313 rs6330 G A . PASS 0.1551000 0.3228000 0.1637000 0.4563000 0.1902000 0.2474000 36.1 70.0 79 1000.00 3.80 50.63 0 50.63 0/1
chr1 115941974 rs990267 T C . PASS 0.5250000 0.5850000 0.6905000 0.6044000 0.5746000 0.5923000 35.83 70.0 80 1000.00 10.06 51.25 0 51.25 0/1
chr1 116108044 rs2000710 T G . PASS 0.5295000 0.9150000 0.9812000 0.9523000 0.9417000 0.8393000 37.0 70.0 11 419.85 0.00 100.00 0 100.00 1/1
chr1 116206423 rs4839469 G A . PASS 0.0416000 0.2176000 0.1220000 0.1620000 0.0859000 0.1150000 36.69 70.0 62 1000.00 5.79 62.90 0 62.90 0/1
chr1 116224925 rs10923176 G A . PASS 0.5325000 0.7507000 0.7202000 0.6740000 0.7832000 0.6779000 35.91 68.18 28 330.72 20.78 39.29 0 39.29 0/1
chr1 116224940 rs10754330 C A . PASS 0.5325000 0.7507000 0.7202000 0.6759000 0.7832000 0.6783000 37.0 68.46 34 404.05 24.43 38.24 0 38.24 0/1
chr1 116225180 rs10923177 A C . PASS 0.5393000 0.7522000 0.7202000 0.6750000 0.7853000 0.6805000 35.67 70.0 29 240.01 13.03 31.03 0 31.03 0/1
chr1 116226459 rs12144356 C T . PASS 0.5976000 0.7594000 0.7202000 0.6740000 0.7832000 0.6963000 37.0 70.0 13 387.87 5.59 84.62 0 84.62 0/1
chr1 116226749 rs5777243,rs200875190,rs34363411 T TTTTA . PASS . . . . . . 36.5 70.0 24 130.33 50.00 25.00 0 25.00 0/1
chr1 116243877 rs7413162 G A . PASS 0.4599000 0.4640000 0.3224000 0.4135000 0.4714000 0.4257000 37.0 70.0 59 1000.00 4.55 59.32 0 61.02 0/1
chr1 116247790 rs3811003 G A . PASS 0.6142000 0.3487000 0.5198000 0.3022000 0.2710000 0.4287000 37.0 69.67 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 116247826 rs72703607 T C . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 70.0 74 956.13 2.24 39.19 0 39.19 0/1
chr1 116260532 rs2997741 A T . PASS 0.7057000 0.6383000 0.6706000 0.5656000 0.6115000 0.6428000 35.8 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 116260544 rs3811001 C T . PASS 0.2375000 0.2824000 0.1825000 0.2555000 0.3119000 0.2508000 35.29 70.0 21 184.70 9.52 33.33 0 33.33 0/1
chr1 116260604 rs2997742 G A . PASS 0.6626000 0.6326000 0.6706000 0.5656000 0.6115000 0.6306000 34.82 70.0 11 399.97 0.00 100.00 0 100.00 1/1
chr1 116268178 rs35967913 GA G . PASS . . . . . . 33.29 70.0 41 1000.00 0.13 92.68 0 92.68 0/1
chr1 116268699 rs6665970 A G . PASS 0.4402000 0.6225000 0.6706000 0.5646000 0.6207000 0.5721000 36.73 69.77 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 116283343 rs9428083 A G . PASS 0.2814000 0.7608000 0.7431000 0.8738000 0.7106000 0.6436000 37.0 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 116283526 rs7538337 G A . PASS 0.2814000 0.7608000 0.7421000 0.8738000 0.7117000 0.6436000 37.0 70.0 18 716.39 0.00 100.00 0 100.00 1/1
chr1 116287634 rs10801969 A G . PASS 0.1657000 0.3473000 0.4296000 0.3052000 0.3067000 0.2995000 36.25 70.0 16 620.83 0.00 100.00 0 100.00 1/1
chr1 116310967 rs4074536 T C . PASS 0.4856000 0.3674000 0.5159000 0.2922000 0.3047000 0.4012000 37.0 70.0 72 1000.00 0.21 54.17 0 54.17 0/1
chr1 116311198 rs4074537 T C . PASS 0.8631000 0.9914000 1.0000000 0.9990000 1.0000000 0.9625000 36.52 70.0 25 996.76 0.00 100.00 0 100.00 1/1
chr1 116399835 rs2811577 C T . PASS 0.1914000 0.3660000 0.4524000 0.1441000 0.3538000 0.2903000 36.29 69.88 41 542.22 19.23 41.46 0 41.46 0/1
chr1 116400329 rs2811578 C G . PASS 0.1853000 0.4107000 0.5079000 0.2018000 0.4039000 0.3275000 37.0 70.0 35 693.44 17.14 57.14 0 57.14 0/1
chr1 116400426 rs7512945 T C . PASS 0.3986000 0.1196000 0.1984000 0.1899000 0.1196000 0.2232000 37.0 69.92 17 417.61 12.75 70.59 0 70.59 0/1
chr1 116534852 rs4046190 C T . PASS 0.1362000 0.4827000 0.4196000 0.6441000 0.6074000 0.4353000 36.54 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 116569530 rs2488429 G C . PASS 0.8495000 0.8674000 0.8740000 0.9543000 0.9796000 0.9034000 36.1 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 116577981 rs1935828 G A . PASS 0.8585000 0.9856000 1.0000000 0.9980000 1.0000000 0.9603000 37.0 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 116609126 rs3833541 TC T . PASS . . . . . . 35.67 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 117122285 . G GTCC . PASS 0.1528000 0.3069000 0.1022000 0.4284000 0.2873000 0.2456000 36.58 70.0 139 878.01 8.15 23.74 0 23.74 0/1
chr1 117122288 rs647711 G C . PASS 0.1732000 0.3141000 0.1101000 0.4324000 0.3241000 0.2616000 36.78 70.0 136 1000.00 4.63 39.71 0 39.71 0/1
chr1 117142613 rs76151115 C T . PASS . . . . . . 36.11 64.52 146 631.86 18.52 18.49 0 18.49 0/1
chr1 117142641 rs76417519 G A . PASS . . . . . . 35.67 63.06 135 289.06 16.30 13.33 0 13.33 0/1
chr1 117142707 rs201515387 G A . PASS . . . . . . 37.0 57.72 150 267.90 0.89 12.00 0 12.00 0/1
chr1 117142844 . C T . PASS . . . . . . 37.0 63.15 158 327.37 13.67 12.66 0 12.66 0/1
chr1 117142855 rs61786568 C T . PASS 0.0030000 0.0000000 0.0000000 0.0000000 0.0000000 0.0007987 37.0 63.15 159 324.36 8.05 12.58 0 12.58 0/1
chr1 117142867 . CCA CTG . PASS . . . . . . 37.0 63.14 156 410.93 1.17 14.10 0 14.10 0/1
chr1 117146504 rs61786577 G A . PASS . . . . . . 35.74 60.26 139 318.77 20.83 13.67 0 13.67 0/1
chr1 117146563 rs61786578 G A . PASS . . . . . . 36.33 53.39 126 328.15 6.35 14.29 0 14.29 0/1
chr1 117146571 rs61786579 A G . PASS . . . . . . 37.0 51.44 117 283.72 8.87 13.68 0 13.68 0/1
chr1 117146585 . G A . PASS . . . . . . 37.0 51.44 108 310.80 11.57 14.81 0 14.81 0/1
chr1 117146592 . C G . PASS . . . . . . 37.0 50.67 91 316.03 23.00 16.48 0 16.48 0/1
chr1 117146629 . T C . PASS . . . . . . 37.0 47.88 50 151.20 10.00 16.00 0 16.00 0/1
chr1 117150488 rs111304243 G A . PASS . . . . . . 37.0 44.0 20 74.41 10.00 20.00 0 20.00 0/1
chr1 117150617 rs61786588 A G . PASS . . . . . . 36.14 57.43 115 766.96 2.80 24.35 0 24.35 0/1
chr1 117150628 rs79475403 G C . PASS . . . . . . 36.14 58.79 114 765.79 3.76 24.56 0 24.56 0/1
chr1 117150736 rs140699309 C G . PASS . . . . . . 35.15 53.69 94 160.68 70.57 12.77 0 13.83 0/1
chr1 117150928 rs150982249 C T . PASS . . . . . . 37.0 62.68 81 767.99 5.14 30.86 0 30.86 0/1
chr1 117150933 rs115837117 G A . PASS . . . . . . 37.0 61.05 64 568.53 8.06 29.69 0 29.69 0/1
chr1 117150966 rs79107296 G T . PASS . . . . . . 36.2 62.6 39 460.54 0.00 38.46 0 38.46 0/1
chr1 117156340 rs200526371 C T . PASS . . . . . . 34.0 64.25 17 71.43 47.06 23.53 0 23.53 0/1
chr1 117156459 rs61786651 C T . PASS . . . . . . 36.37 62.53 96 460.20 13.49 19.79 0 19.79 0/1
chr1 117156490 rs61786652 T C . PASS . . . . . . 37.0 61.09 91 153.10 23.38 12.09 0 12.09 0/1
chr1 117156583 . CTG CCA . PASS . . . . . . 37.0 49.5 130 83.51 9.23 9.23 0 9.23 0/1
chr1 117158934 rs200177381 C T . PASS . . . . . . 36.14 49.29 129 152.02 30.90 10.85 0 10.85 0/1
chr1 117158972 rs3965246 A G . PASS . . . . . . 36.0 50.92 114 602.89 3.95 21.05 0 21.05 0/1
chr1 117159024 rs201692914 C T . PASS . . . . . . 37.0 51.35 100 376.63 3.65 17.00 0 17.00 0/1
chr1 117236970 rs614477 G C . PASS 0.2965000 0.5346000 0.1726000 0.6600000 0.3579000 0.3896000 36.25 70.0 16 616.68 0.00 100.00 0 100.00 1/1
chr1 117256697 rs9887785 A C . PASS 0.4675000 0.5793000 0.5813000 0.6541000 0.6472000 0.5785000 36.92 69.96 152 1000.00 0.00 100.00 0 100.00 1/1
chr1 117311147 rs699738 C A . PASS 0.6293000 0.2450000 0.2877000 0.1004000 0.0838000 0.2945000 36.17 70.0 62 964.09 24.14 46.77 0 46.77 0/1
chr1 117487270 rs56209138 G A . PASS 0.2292000 0.1816000 0.5149000 0.2197000 0.2802000 0.2881000 36.31 70.0 59 1000.00 3.49 59.32 0 59.32 0/1
chr1 117487709 rs71483896 CAT CGA . PASS . . . . . . 36.42 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 117509981 rs12410651 G A . PASS 0.1339000 0.1556000 0.0466000 0.1819000 0.1493000 0.1320000 37.0 70.0 21 447.34 5.13 61.90 0 61.90 0/1
chr1 117509987 rs12403233 C T . PASS 0.1339000 0.1556000 0.0466000 0.1819000 0.1616000 0.1344000 35.0 70.0 20 384.56 10.00 60.00 0 60.00 0/1
chr1 117527645 rs3841438,rs36119404 GTCT G . PASS 0.5159000 0.2637000 0.4514000 0.2763000 0.3149000 0.3806000 36.67 70.0 49 559.35 13.83 36.73 1 36.73 0/1
chr1 117527647 . CT C . PASS . . . . . . 36.67 70.0 43 574.42 9.56 41.86 1 41.86 0/1
chr1 117529458 rs10801922 G A . PASS 0.3018000 0.5951000 0.6597000 0.4364000 0.5910000 0.4980000 36.22 70.0 91 1000.00 7.55 50.55 0 50.55 0/1
chr1 117554421 rs3754112 A G . PASS 0.0348000 0.2017000 0.0635000 0.3370000 0.1677000 0.1504000 36.73 70.0 90 1000.00 0.00 50.00 0 50.00 0/1
chr1 117559726 rs2249265 A G . PASS 0.9690000 0.9625000 0.8462000 0.9602000 0.9366000 0.9353000 36.1 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 117569390 rs2764878 C T . PASS 0.5272000 0.5908000 0.6835000 0.4841000 0.5276000 0.5589000 37.0 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 117602960 rs2244501 C A . PASS 0.3835000 0.8631000 0.9018000 0.8757000 0.7904000 0.7326000 35.23 70.0 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 117603188 rs2244406 G T . PASS 0.5061000 0.7723000 0.9415000 0.6938000 0.7515000 0.7163000 36.67 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 117617705 rs998532 A G . PASS 0.1157000 0.6671000 0.7679000 0.5934000 0.6033000 0.5146000 35.76 69.31 60 962.24 0.11 48.33 0 48.33 0/1
chr1 117618067 rs1289673 C T . PASS 0.1120000 0.6686000 0.7679000 0.5934000 0.6033000 0.5138000 36.41 69.51 77 1000.00 6.34 53.25 0 53.25 0/1
chr1 117618722 rs1289672 T C . PASS 0.9735000 0.9957000 1.0000000 0.9990000 1.0000000 0.9922000 36.25 70.0 16 620.83 0.00 100.00 0 100.00 1/1
chr1 117622286 rs2801939 A G . PASS 0.1286000 0.6945000 0.7688000 0.6600000 0.6247000 0.5395000 37.0 70.0 48 1000.00 6.18 60.42 0 60.42 0/1
chr1 117631391 rs1555792 T C . PASS 0.7496000 0.9481000 1.0000000 0.9294000 0.9796000 0.9085000 36.71 69.02 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 117633366 rs2296447 T C . PASS 0.0537000 0.1311000 0.0575000 0.2187000 0.1677000 0.1206000 35.0 70.0 20 145.95 3.33 30.00 0 30.00 0/1
chr1 117644058 rs41276572 A G . PASS 0.0000000 0.0115000 0.0000000 0.0139000 0.0041000 0.0051917 35.24 70.0 64 1000.00 0.74 53.12 0 53.12 0/1
chr1 117655093 rs41301281 G A . PASS 0.0015000 0.0360000 0.0000000 0.0567000 0.0020000 0.0171730 36.52 70.0 39 882.39 0.82 64.10 0 64.10 0/1
chr1 117656088 rs1289658 A G . PASS 0.6793000 0.4755000 0.1865000 0.4364000 0.3824000 0.4451000 37.0 70.0 82 764.97 8.20 30.49 0 30.49 0/1
chr1 117660608 rs1289655 C T . PASS 0.7973000 0.8804000 0.8671000 0.9056000 0.9172000 0.8680000 36.64 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 117660754 rs749902 C T . PASS 0.2103000 0.3674000 0.0327000 0.3529000 0.2086000 0.2246000 37.0 70.0 85 1000.00 1.40 49.41 0 49.41 0/1
chr1 117663913 rs3795655 C T . PASS 0.7625000 0.6282000 0.9673000 0.6441000 0.7894000 0.7666000 37.0 70.0 16 169.99 16.67 37.50 0 37.50 0/1
chr1 117690272 rs10754339 G A . PASS 0.2897000 0.8718000 0.9206000 0.9225000 0.8538000 0.7346000 36.41 70.0 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 117696083 rs57126217 AT A . PASS . . . . . . 35.8 70.0 11 333.74 7.27 90.91 0 90.91 1/1
chr1 117947897 rs3216042 CT C . PASS 0.5961000 0.4294000 0.5526000 0.6332000 0.6462000 0.5815000 36.14 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 117957288 rs1289948 A G . PASS 0.8888000 0.6744000 0.6240000 0.7555000 0.8160000 0.7648000 37.0 70.0 15 591.07 0.00 100.00 0 100.00 1/1
chr1 118165691 rs1630312 C T . PASS 0.2617000 0.2810000 0.1220000 0.2873000 0.2035000 0.2071000 36.8 70.0 112 1000.00 11.31 53.57 0 53.57 0/1
chr1 118183659 rs1775826 A C . PASS 0.3207000 0.6023000 0.4286000 0.6441000 0.5409000 0.4894000 34.0 70.0 16 70.29 12.50 25.00 0 25.00 0/1
chr1 118255058 rs2002747 A G . PASS 0.4213000 0.6110000 0.6052000 0.5467000 0.5777000 0.5403000 36.0 70.0 64 1000.00 14.24 56.25 0 56.25 0/1
chr1 118320644 rs1780028 A G . PASS 0.5189000 0.8775000 0.9147000 0.8877000 0.9274000 0.8021000 36.33 67.04 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 118320859 rs1775749 T A . PASS 0.9970000 1.0000000 1.0000000 1.0000000 1.0000000 0.9992000 37.0 57.19 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 118321119 rs114485606 T C . PASS 0.5204000 0.8775000 0.9147000 0.8877000 0.9264000 0.8023000 37.0 67.09 11 424.00 0.00 100.00 0 100.00 1/1
chr1 118485989 rs72697552 T A . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 70.0 12 303.19 16.67 75.00 0 75.00 0/1
chr1 118537142 rs72697565 T C . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 36.54 70.0 69 833.88 10.93 37.68 0 37.68 0/1
chr1 118537240 rs72697566 C G . PASS 0.0000000 0.0014000 0.0000000 0.0040000 0.0000000 0.0009984 37.0 70.0 10 225.67 17.14 70.00 0 70.00 0/1
chr1 118565953 rs10923472 G A . PASS 0.1551000 0.4107000 0.1567000 0.4314000 0.3650000 0.2873000 36.77 69.62 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 118583408 rs10923477 G A . PASS 0.1573000 0.4135000 0.1567000 0.4324000 0.3650000 0.2885000 37.0 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 118617274 rs1935993 C T . PASS 0.6006000 0.4625000 0.1696000 0.4881000 0.3763000 0.4283000 36.5 70.0 24 954.99 0.00 100.00 0 100.00 1/1
chr1 118623681 rs56768861,rs5777332,rs34707033,rs66844004,rs72288918 TACACAC T . PASS . . . . . . 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 118635715 rs55884631 A T . PASS 0.0000000 0.0086000 0.0000000 0.0179000 0.0031000 0.0053914 37.0 70.0 12 94.34 0.00 33.33 0 33.33 0/1
chr1 118644430 rs10754367 A G . PASS 0.6906000 0.5072000 0.4534000 0.5477000 0.5634000 0.5639000 36.36 70.0 168 1000.00 0.00 100.00 0 100.00 1/1
chr1 118933899 rs10923561 T C . PASS 0.4463000 0.5187000 0.5923000 0.6938000 0.6411000 0.5735000 37.0 70.0 17 208.76 13.45 41.18 0 41.18 0/1
chr1 119157211 rs1742854 G T . PASS 0.3805000 0.3977000 0.2460000 0.5080000 0.4356000 0.3922000 36.2 70.0 15 574.91 0.00 100.00 0 100.00 1/1
chr1 119157490 rs1742856 A G . PASS 0.8306000 0.6643000 0.4385000 0.6233000 0.5133000 0.6250000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 119466275 rs4659129 A G . PASS 0.5696000 0.6196000 0.7817000 0.6839000 0.5665000 0.6416000 37.0 70.0 15 591.07 0.00 100.00 0 100.00 1/1
chr1 119530133 rs961470 A G . PASS 0.0968000 0.0519000 0.2232000 0.0577000 0.0521000 0.0994000 37.0 70.0 22 235.47 9.09 36.36 0 36.36 0/1
chr1 119575818 rs3790549 C G . PASS 0.1127000 0.0331000 0.2143000 0.0437000 0.0542000 0.0968000 36.55 70.0 117 1000.00 7.87 45.30 0 45.30 0/1
chr1 119577837 rs2247883 A T . PASS 0.4652000 0.5994000 0.5595000 0.4533000 0.3671000 0.4812000 37.0 70.0 54 928.64 3.70 50.00 0 50.00 0/1
chr1 119627856 rs6658479 C T . PASS 0.7148000 0.2608000 0.3889000 0.4006000 0.3354000 0.4491000 37.0 69.88 17 674.61 0.00 100.00 0 100.00 1/1
chr1 119627954 rs12738768 T C . PASS 0.1271000 0.0173000 0.2103000 0.0278000 0.0532000 0.0942000 37.0 70.0 30 169.63 14.29 23.33 0 23.33 0/1
chr1 119628096 rs113262693 C CT . PASS . . . . . . 35.5 70.0 21 210.89 10.71 38.10 0 38.10 0/1
chr1 119669262 rs35404519 C A . PASS 0.1551000 0.0187000 0.2262000 0.0278000 0.0532000 0.1050000 35.0 70.0 17 150.82 5.88 35.29 0 35.29 0/1
chr1 119669266 rs7556558 G C . PASS 0.2965000 0.6744000 0.8244000 0.5199000 0.3916000 0.5186000 37.0 70.0 18 159.82 11.11 33.33 0 33.33 0/1
chr1 119669271 rs6428795 A G . PASS 0.2965000 0.6744000 0.8234000 0.5199000 0.3916000 0.5184000 37.0 70.0 19 160.96 15.79 31.58 0 31.58 0/1
chr1 119762175 rs72691108 G A . PASS 0.2110000 0.1196000 0.0506000 0.2455000 0.1953000 0.1699000 35.0 70.0 16 157.98 25.00 37.50 0 37.50 0/1
chr1 119923724 rs2275607 T C . PASS 0.1558000 0.5216000 0.4504000 0.5298000 0.3446000 0.3582000 36.57 70.0 73 905.37 8.51 38.36 0 38.36 0/1
chr1 119925403 rs1341007 C T . PASS 0.0817000 0.5187000 0.4474000 0.5239000 0.3425000 0.3556000 37.0 70.0 10 188.05 0.00 60.00 0 60.00 0/1
chr1 119925464 rs2298027 G A . PASS 0.0817000 0.5202000 0.4474000 0.5239000 0.3436000 0.3560000 37.0 70.0 29 465.02 8.87 48.28 0 48.28 0/1
chr1 119927680 rs6667679 A G . PASS 0.7042000 0.7291000 0.6726000 0.6203000 0.6176000 0.6675000 37.0 69.17 43 840.59 9.69 55.81 0 55.81 0/1
chr1 119941153 rs5777391,rs61250067 A AT . PASS 0.4690000 0.5778000 0.5694000 0.5268000 0.4489000 0.5120000 36.56 69.96 105 1000.00 4.35 46.67 0 48.57 0/1
chr1 119964933 rs75429891 T C . PASS 0.0000000 0.0000000 0.0000000 0.0020000 0.0000000 0.0003994 36.69 69.59 83 1000.00 7.35 46.99 0 46.99 0/1
chr1 119981612 rs10489812 C T . PASS 0.3162000 0.1513000 0.0635000 0.0765000 0.1411000 0.1601000 35.8 70.0 25 297.98 20.00 40.00 0 40.00 0/1
chr1 119988404 rs10923823 C T . PASS 0.1021000 0.5303000 0.4315000 0.5398000 0.3446000 0.3630000 37.0 70.0 31 626.08 15.41 58.06 0 58.06 0/1
chr1 119988422 rs11805965 C T . PASS 0.3169000 0.1513000 0.0635000 0.0765000 0.1411000 0.1603000 37.0 70.0 25 393.52 10.00 48.00 0 48.00 0/1
chr1 119988688 rs11802681 G A . PASS 0.3162000 0.1513000 0.0625000 0.0765000 0.1411000 0.1599000 36.25 70.0 22 557.63 3.41 72.73 0 72.73 0/1
chr1 120057158 rs6203 C T . PASS 0.0333000 0.4813000 0.6528000 0.4254000 0.3814000 0.3668000 36.75 69.56 94 1000.00 2.22 51.06 0 51.06 0/1
chr1 120057246 rs1047303 C A . PASS 0.9145000 0.7954000 0.9177000 0.6600000 0.8425000 0.8335000 35.99 67.28 71 1000.00 0.00 100.00 0 100.00 1/1
chr1 120071740 rs68156005 AT A . PASS 0.4213000 0.7176000 0.8581000 0.6531000 0.7751000 0.6659000 36.37 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 120088317 rs2885613 T C . PASS 0.4486000 0.7176000 0.8423000 0.6541000 0.7751000 0.6701000 35.4 70.0 15 567.05 0.00 100.00 0 100.00 1/1
chr1 120114293 rs373593839 AGC AAT . PASS . . . . . . 36.1 69.85 48 598.70 10.00 41.67 0 41.67 0/1
chr1 120144023 rs7519907 C T . PASS 0.2648000 0.4352000 0.7302000 0.4145000 0.5736000 0.4724000 36.33 69.89 41 583.98 8.67 43.90 0 43.90 0/1
chr1 120147862 rs72695123 G A . PASS 0.0726000 0.0648000 0.0020000 0.0934000 0.0276000 0.0527000 36.43 69.05 28 748.42 7.14 75.00 0 75.00 0/1
chr1 120165826 rs12076924 C T . PASS 0.8434000 0.6484000 0.7738000 0.5845000 0.6667000 0.7159000 36.77 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 120166453 rs76236163 G C . PASS 0.0030000 0.0677000 0.0020000 0.0974000 0.0399000 0.0379000 37.0 70.0 110 1000.00 4.73 45.45 0 45.45 0/1
chr1 120166681 rs12067843 G A . PASS 0.7927000 0.5893000 0.7758000 0.5030000 0.6360000 0.6723000 36.47 70.0 147 1000.00 2.74 46.26 0 46.26 0/1
chr1 120242537 rs10802132 C T . PASS 0.6778000 0.3098000 0.3333000 0.3300000 0.3272000 0.4191000 37.0 70.0 43 255.81 3.72 23.26 0 23.26 0/1
chr1 120242571 rs611365 C T . PASS 0.8495000 0.6916000 0.9236000 0.5626000 0.6656000 0.7490000 37.0 70.0 40 348.37 21.67 30.00 0 30.00 0/1
chr1 120254545 rs562038 G C . PASS 0.9077000 0.7550000 0.9266000 0.6859000 0.7628000 0.8175000 37.0 70.0 17 288.15 13.07 52.94 0 52.94 0/1
chr1 120277194 rs59445927 TTAA T . PASS . . . . . . 36.14 70.0 12 169.48 2.38 58.33 0 58.33 0/1
chr1 120285546 rs543703 G A . PASS 0.7716000 0.7478000 0.6220000 0.6680000 0.7965000 0.7222000 36.86 70.0 86 1000.00 0.00 100.00 0 100.00 1/1
chr1 120293367 rs667246 T C . PASS 0.6369000 0.7378000 0.6429000 0.6710000 0.7894000 0.6887000 36.62 69.38 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 120296033 . AA A . PASS . . . . . . 35.41 70.0 120 1000.00 2.43 92.50 1 92.50 1/1
chr1 120296033 rs71745821,rs71723242 AACAC A . PASS . . . . . . 34.79 70.0 119 1000.00 2.24 35.29 1 95.80 0/1
chr1 120296033 . AACAC AAC . PASS . . . . . . . . 119 1000.00 3.97 57.98 1 95.80 0/1
chr1 120296034 . AC A . PASS . . . . . . 35.42 70.0 119 1000.00 0.74 94.12 1 94.12 1/1
chr1 120302419 rs12121219 A G . PASS 0.1626000 0.0591000 0.0268000 0.0944000 0.1575000 0.1062000 37.0 69.29 48 992.63 16.67 58.33 0 58.33 0/1
chr1 120337384 rs947270 T C . PASS 0.2133000 0.5821000 0.7589000 0.4394000 0.4131000 0.4587000 37.0 70.0 14 259.55 3.57 57.14 0 57.14 0/1
chr1 120337403 rs947271 A G . PASS 0.2141000 0.5821000 0.7589000 0.4404000 0.4131000 0.4591000 37.0 70.0 11 226.81 0.00 63.64 0 63.64 0/1
chr1 120378678 rs3009182 C T . PASS 0.4107000 0.7118000 0.4673000 0.8121000 0.8405000 0.6284000 37.0 70.0 61 911.72 2.91 44.26 0 44.26 0/1
chr1 120380008 rs3009184 T A . PASS 0.3979000 0.7118000 0.4673000 0.8121000 0.8405000 0.6250000 36.0 70.0 54 779.32 11.11 44.44 0 44.44 0/1
chr1 120384205 rs2994820 A G . PASS 0.3979000 0.7118000 0.4673000 0.8121000 0.8405000 0.6250000 37.0 69.88 49 864.30 13.71 51.02 0 51.02 0/1
chr1 120404614 rs3850866 T C . PASS 0.3585000 0.5749000 0.3710000 0.7396000 0.7413000 0.5423000 37.0 69.59 44 754.04 0.00 50.00 0 50.00 0/1
chr1 120436751 rs35273427 T C . PASS 0.3306000 0.0865000 0.0407000 0.0606000 0.2178000 0.1621000 35.69 69.98 136 1000.00 9.71 40.44 0 40.44 0/1
chr1 120437718 rs2793823 G A . PASS 0.7171000 0.2133000 0.1052000 0.1322000 0.3282000 0.3307000 36.33 70.0 71 1000.00 6.96 50.70 0 50.70 0/1
chr1 120437884 rs2641348 A G . PASS 0.3805000 0.1196000 0.0466000 0.1143000 0.2382000 0.1959000 37.0 70.0 84 1000.00 10.38 59.52 0 59.52 0/1
chr1 120458004 rs6685892 A T . PASS 0.3775000 0.1182000 0.0476000 0.1103000 0.2290000 0.1925000 36.62 70.0 66 1000.00 12.69 48.48 0 48.48 0/1
chr1 120461253 rs2793829 C T . PASS 0.3775000 0.1196000 0.0476000 0.1103000 0.2270000 0.1923000 37.0 70.0 14 301.32 23.81 64.29 0 64.29 0/1
chr1 120471857 rs2493392 C T . PASS 0.3767000 0.1196000 0.0476000 0.1103000 0.2290000 0.1925000 37.0 70.0 25 435.29 4.92 52.00 0 52.00 0/1
chr1 120477998 rs2453056 C A . PASS 0.6021000 0.1945000 0.1101000 0.1312000 0.3425000 0.3013000 35.4 70.0 31 472.61 9.46 48.39 0 48.39 0/1
chr1 120478285 rs5025718 T C . PASS 0.0688000 0.7795000 0.8879000 0.8658000 0.6431000 0.6044000 37.0 70.0 11 226.81 2.60 63.64 0 63.64 0/1
chr1 120480394 rs2453057 T C . PASS 0.9236000 0.9942000 1.0000000 0.9980000 1.0000000 0.9786000 36.37 70.0 19 746.14 0.00 100.00 0 100.00 1/1
chr1 120480709 rs2453058 C T . PASS 0.3767000 0.1196000 0.0476000 0.1103000 0.2280000 0.1923000 35.67 70.0 11 298.34 8.08 81.82 0 81.82 0/1
chr1 120484421 rs2493420 G A . PASS 0.4902000 0.1916000 0.1101000 0.1302000 0.3436000 0.2714000 37.0 70.0 23 274.23 2.90 39.13 0 39.13 0/1
chr1 120496119 rs7534585 A T . PASS 0.3775000 0.1196000 0.0476000 0.1103000 0.2270000 0.1923000 36.56 70.0 54 916.63 11.11 50.00 0 50.00 0/1
chr1 120496127 rs7534586 A C . PASS 0.3775000 0.1196000 0.0476000 0.1103000 0.2270000 0.1923000 36.17 70.0 59 973.12 4.68 49.15 0 49.15 0/1
chr1 120506108 rs2934381 G A . PASS 0.3767000 0.1196000 0.0476000 0.1103000 0.2270000 0.1921000 37.0 70.0 12 223.80 0.00 58.33 0 58.33 0/1
chr1 120512104 rs2493409 T C . PASS 0.9244000 0.9942000 1.0000000 0.9980000 0.9990000 0.9786000 36.59 70.0 87 1000.00 0.00 100.00 0 100.00 1/1
chr1 120529750 rs2453040 A C . PASS 0.3722000 0.1182000 0.0476000 0.1093000 0.2280000 0.1907000 37.0 70.0 23 228.32 5.43 34.78 0 34.78 0/1
chr1 120539213 rs2691745 G T . PASS . . . . . . 37.0 68.25 20 70.26 30.00 20.00 0 20.00 0/1
chr1 120539331 rs2124109 C T . PASS . . . . . . 36.06 67.24 88 1000.00 6.91 57.95 0 57.95 0/1
chr1 120570921 rs138481753 T A . PASS . . . . . . 36.29 52.18 58 486.89 3.45 29.31 0 29.31 0/1
chr1 120570922 rs11364041 GC G . PASS . . . . . . 35.18 52.18 59 459.46 6.78 28.81 1 28.81 0/1
chr1 120570922 . GCA GT . PASS . . . . . . . . 62 459.46 9.68 27.42 1 27.42 0/1
chr1 120570924 rs146749684 A T . PASS . . . . . . 35.59 52.18 61 465.85 6.56 27.87 1 27.87 0/1
chr1 120571063 rs10657904 C CAT . PASS . . . . . . 36.36 49.11 148 1000.00 20.36 31.76 0 37.16 0/1
chr1 120571076 rs2691711 C T . PASS . . . . . . 36.48 50.7 110 585.16 12.25 20.91 0 20.91 0/1
chr1 120572547 rs141882865 T C . PASS . . . . . . 37.0 48.0 35 112.81 7.62 17.14 0 17.14 0/1
chr1 120572572 rs146242578 C T . PASS . . . . . . 35.91 48.36 41 291.59 5.32 26.83 0 26.83 0/1
chr1 120572612 . T C . PASS . . . . . . 37.0 51.33 47 76.69 27.66 12.77 0 12.77 0/1
chr1 120607321 rs76170244 T C . PASS 0.5900000 0.4352000 0.4583000 0.4632000 0.5082000 0.5006000 37.0 52.0 58 586.60 12.52 32.76 0 32.76 0/1
chr1 120607458 . C CA . PASS . . . . . . 37.0 53.0 11 85.91 18.18 36.36 0 36.36 0/1
chr1 120611830 rs61790277 G A . PASS . . . . . . 37.0 64.27 24 521.84 8.33 62.50 0 62.50 0/1
chr1 120611876 rs11801062 C T . PASS . . . . . . 35.42 63.89 60 1000.00 10.70 63.33 0 63.33 0/1
chr1 120611964 rs11810554 G C . PASS . . . . . . 36.22 66.89 170 1000.00 6.80 52.94 0 54.12 0/1
chr1 120612006 rs4021006 G A . PASS 0.2632000 0.4049000 0.4315000 0.4423000 0.4744000 0.3940000 35.98 66.6 191 1000.00 11.30 49.21 0 49.21 0/1
chr1 120612034 rs201668322 T G . PASS . . . . . . 37.0 56.83 153 755.98 9.80 19.61 0 19.61 0/1
chr1 120612040 . T TCCTCCGCCG . PASS . . . . . . 36.56 61.94 141 1000.00 0.64 28.37 0 65.25 0/1
chr1 120612168 rs11801102 C T . PASS . . . . . . 35.29 49.86 17 196.74 11.76 41.18 0 41.18 0/1
chr1 120854528 rs78105048 T C . PASS 0.0000000 0.0058000 0.0000000 0.0199000 0.0031000 0.0053914 37.0 64.86 45 751.03 2.22 48.89 0 48.89 0/1
chr1 120904791 rs2791063 A G . PASS 0.9682000 0.7954000 0.9692000 0.7604000 0.8241000 0.8746000 37.0 47.42 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 120906120 rs139709905 C G . PASS 0.0000000 0.0058000 0.0000000 0.0209000 0.0031000 0.0055910 36.76 65.52 102 1000.00 6.27 49.02 0 49.02 0/1
chr1 120927081 rs76856338 C T . PASS . . . . . . 36.2 64.67 35 476.73 1.90 42.86 0 42.86 0/1
chr1 120934573 rs201922049 C T . PASS 0.0068000 0.1441000 0.1567000 0.1302000 0.3211000 0.1422000 37.0 53.0 41 94.75 30.89 14.63 0 14.63 0/1
chr1 121115761 rs150166046 T G . PASS . . . . . . 36.25 60.44 43 490.28 3.20 37.21 0 37.21 0/1
chr1 121115786 rs199825051 C A . PASS . . . . . . 36.29 61.0 80 420.68 30.00 21.25 0 21.25 0/1
chr1 121115958 rs200236715 T C . PASS 0.2126000 0.1052000 0.2748000 0.1382000 0.0593000 0.1653000 37.0 64.71 160 906.15 6.40 21.25 0 21.25 0/1
chr1 121115981 rs201138873 C T . PASS . . . . . . 36.45 69.36 158 398.91 12.66 13.92 0 13.92 0/1
chr1 121116121 rs201302047 T C . PASS . . . . . . 37.0 55.5 42 91.75 9.52 14.29 0 14.29 0/1
chr1 121116647 rs2772072 T A . PASS . . . . . . 36.08 27.21 160 1000.00 21.19 24.38 0 24.38 0/1
chr1 121116678 rs61806689 C T . PASS . . . . . . 36.12 69.49 224 1000.00 5.23 36.61 0 36.61 0/1
chr1 121116688 rs61806690 A G . PASS . . . . . . 36.54 57.27 258 1000.00 2.97 50.39 0 50.39 0/1
chr1 121116933 rs79097880 T C . PASS 0.5575000 0.6081000 0.7738000 0.6123000 0.4611000 0.6002000 37.0 69.83 20 408.57 0.00 60.00 0 60.00 0/1
chr1 121116953 rs78187610 A G . PASS 0.7458000 0.6239000 0.7827000 0.6133000 0.4632000 0.6546000 37.0 69.78 13 304.33 0.00 69.23 0 69.23 0/1
chr1 121129557 rs200881439 T C . PASS . . . . . . 34.33 64.22 16 271.28 15.28 56.25 0 56.25 0/1
chr1 121286901 rs7528274 A T . PASS 0.5348000 0.5720000 0.6052000 0.6193000 0.3753000 0.5399000 37.0 70.0 18 243.36 0.00 44.44 0 44.44 0/1
chr1 121290234 rs12146056 G A . PASS 0.5212000 0.5720000 0.5942000 0.6143000 0.3824000 0.5345000 34.47 69.0 54 550.60 7.80 35.19 0 35.19 0/1
chr1 121484142 rs9662444 C T . PASS . . . . . . 37.0 49.2 22 110.17 16.36 22.73 0 22.73 0/1
chr1 121484153 rs9701684 C G . PASS . . . . . . 37.0 49.2 22 106.02 16.36 22.73 0 22.73 0/1
chr1 121484159 rs6605014 C G . PASS . . . . . . 36.54 60.69 21 365.66 12.12 52.38 0 61.90 0/1
chr1 121484193 rs4897988 T A . PASS . . . . . . 37.0 58.18 11 419.85 0.00 100.00 0 100.00 1/1
chr1 121484423 rs7368003 T C . PASS . . . . . . 36.29 67.18 17 662.60 0.00 100.00 0 100.00 1/1
chr1 121484503 rs4898086 T A . PASS . . . . . . 36.08 68.1 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 121484533 rs4897894 G A . PASS . . . . . . 36.14 69.14 62 353.70 23.50 22.58 0 22.58 0/1
chr1 121484564 rs56210065 A T . PASS . . . . . . 36.48 69.43 107 512.50 13.17 19.63 0 21.50 0/1
chr1 121484566 rs4115066 A C . PASS . . . . . . 36.43 69.38 105 512.51 15.24 20.00 0 20.00 0/1
chr1 121484591 rs4898109 T A . PASS . . . . . . 36.53 68.43 129 1000.00 0.00 100.00 0 100.00 1/1
chr1 121484598 . TCT TGC . PASS . . . . . . 36.47 68.2 126 1000.00 1.59 33.33 0 35.71 0/1
chr1 121484602 rs71239173 T C . PASS . . . . . . 36.0 68.9 131 1000.00 6.52 45.04 0 45.80 0/1
chr1 121484650 rs4092774 A G . PASS . . . . . . 36.68 67.32 136 1000.00 7.11 27.21 0 27.94 0/1
chr1 121484685 rs9701937 A G . PASS . . . . . . 36.58 68.28 115 1000.00 0.00 100.00 0 100.00 1/1
chr1 121484688 rs2128558 T A . PASS . . . . . . 36.2 68.13 117 187.01 23.08 11.97 0 12.82 0/1
chr1 121484690 rs71230276 T A . PASS . . . . . . 37.0 68.29 113 208.04 4.30 12.39 0 12.39 0/1
chr1 121484712 rs4788230 T G . PASS . . . . . . 36.67 68.51 109 1000.00 1.51 98.17 0 100.00 1/1
chr1 121484723 rs4092775 T G . PASS . . . . . . 35.99 68.76 101 1000.00 2.32 93.07 0 94.06 1/1
chr1 121484729 rs4092776 C T . PASS . . . . . . 36.88 68.83 100 1000.00 0.13 93.00 0 99.00 1/1
chr1 121484732 rs4103110 A C . PASS . . . . . . 36.14 68.95 99 1000.00 2.83 40.40 0 42.42 0/1
chr1 121484779 rs4788235 G A . PASS . . . . . . 36.47 69.51 105 1000.00 7.62 42.86 0 42.86 0/1
chr1 121484835 rs3916394 A T . PASS . . . . . . 36.7 69.25 103 1000.00 2.09 38.83 0 38.83 0/1
chr1 121484847 rs2022553 T G . PASS . . . . . . 36.43 69.31 114 1000.00 3.51 36.84 0 36.84 0/1
chr1 121484852 rs28838403 G A . PASS . . . . . . 35.4 69.73 115 185.17 2.61 12.17 0 13.04 0/1
chr1 121484855 rs4123965 T G . PASS . . . . . . 36.44 69.33 117 1000.00 0.49 35.90 0 36.75 0/1
chr1 121484858 rs28861668 A T . PASS . . . . . . 35.15 68.38 123 112.16 27.14 10.57 0 10.57 0/1
chr1 121484867 rs3916395 G T . PASS . . . . . . 37.0 68.83 124 148.22 27.92 10.48 0 14.52 0/1
chr1 121484880 rs2128557 T C . PASS . . . . . . 36.65 68.71 121 972.75 18.18 27.27 0 28.10 0/1
chr1 121484951 rs7368048 T C . PASS . . . . . . 36.55 68.76 108 1000.00 0.76 99.07 0 99.07 1/1
chr1 121484979 rs9793658 G T . PASS . . . . . . 36.66 68.09 94 1000.00 0.06 37.23 0 37.23 0/1
chr1 121485000 . CGC CAG . PASS . . . . . . 36.59 67.95 87 1000.00 4.45 36.78 0 100.00 0/1
chr1 121485000 . CGC CAC . PASS . . . . . . 36.59 67.95 87 1000.00 2.39 60.92 0 100.00 0/1
chr1 121485015 rs28819139 G T . PASS . . . . . . 36.27 69.24 89 1000.00 2.59 37.08 0 37.08 0/1
chr1 121485058 rs4788256 A G . PASS . . . . . . 37.0 65.1 101 81.24 23.17 9.90 0 9.90 0/1
chr1 121485071 rs77401738 C A . PASS . . . . . . 36.58 69.04 115 1000.00 1.48 97.39 0 100.00 1/1
chr1 121485088 rs7366682 T A . PASS 0.5552000 0.4841000 0.5228000 0.5070000 0.5133000 0.5210000 36.76 68.62 150 1000.00 0.44 97.33 0 99.33 1/1
chr1 121485099 rs1842865 T A . PASS . . . . . . 36.69 68.41 184 1000.00 14.83 21.20 0 21.20 0/1
chr1 121485101 rs4787515 A T . PASS . . . . . . 37.0 68.94 207 844.06 12.32 17.39 0 17.39 0/1
chr1 121485213 rs4897989 G A . PASS . . . . . . 37.0 67.86 554 525.95 17.18 9.57 0 10.29 0/1
chr1 121485219 rs4103100 T A . PASS . . . . . . 35.35 68.08 528 110.36 19.79 8.14 0 9.66 0/1
chr1 121485227 rs74210638 A T . PASS . . . . . . 36.34 68.73 528 1000.00 1.97 47.73 0 47.92 0/1
chr1 121485241 rs77015350 G C . PASS . . . . . . 36.49 68.71 535 1000.00 2.69 56.07 0 62.06 0/1
chr1 121485246 rs4115084 G A . PASS . . . . . . 36.56 67.31 541 1000.00 6.83 50.09 0 50.09 0/1
chr1 121485248 rs4115049 A G . PASS . . . . . . 35.75 68.08 550 1000.00 0.73 13.82 0 14.00 0/1
chr1 121485251 rs4787556 A T . PASS . . . . . . 36.63 68.04 560 1000.00 0.76 97.50 0 97.86 1/1
chr1 121485275 rs55861919 C T . PASS . . . . . . 37.0 65.74 578 57.09 9.01 7.44 0 9.34 0/1
chr1 121485308 . T C . PASS . . . . . . 37.0 67.82 532 756.19 3.76 10.71 0 11.28 0/1
chr1 121485333 rs4115044 A G . PASS . . . . . . 37.0 68.38 472 901.03 0.12 11.86 0 12.92 0/1
chr1 121485376 . C A . PASS . . . . . . 36.83 68.07 273 1000.00 0.94 15.75 0 26.01 0/1
chr1 121485379 rs200807730 C T . PASS . . . . . . 35.3 67.29 258 1000.00 3.81 53.88 0 54.65 0/1
chr1 121485387 . C T . PASS . . . . . . 37.0 69.05 208 538.12 0.27 13.46 0 17.79 0/1
chr1 121485398 . A G . PASS . . . . . . 37.0 66.93 149 103.84 14.09 9.40 0 9.40 0/1
chr1 121485416 rs6605018 C A . PASS . . . . . . 35.5 66.21 59 752.25 19.92 40.68 0 40.68 0/1
chr1 121485424 rs59029159 C A . PASS . . . . . . 37.0 69.17 44 81.56 9.09 13.64 0 13.64 0/1
chr1 142584601 . C G . PASS . . . . . . 37.0 37.17 30 123.70 73.33 20.00 0 20.00 0/1
chr1 142584739 rs76254947 T A . PASS . . . . . . 35.29 64.57 35 418.80 8.57 40.00 0 40.00 0/1
chr1 142584749 rs61803488 A T . PASS . . . . . . 37.0 57.06 18 712.24 0.00 100.00 0 100.00 1/1
chr1 142618709 rs3120207 C T . PASS 0.4531000 0.5058000 0.4841000 0.5199000 0.4785000 0.4850000 33.57 69.14 11 202.79 10.39 63.64 0 63.64 0/1
chr1 142618740 rs1970223 C A . PASS . . . . . . 37.0 69.36 18 368.68 7.07 61.11 0 61.11 0/1
chr1 142618814 . T C . PASS 0.0000000 0.0000000 0.0000000 0.0000000 0.0020000 0.0003994 37.0 63.17 42 91.75 4.76 14.29 0 14.29 0/1
chr1 142618821 rs200049379 G T . PASS . . . . . . 37.0 65.0 58 206.52 17.24 17.24 0 17.24 0/1
chr1 142618888 rs76769845 C T . PASS . . . . . . 36.49 63.15 291 1000.00 1.83 40.21 0 40.21 0/1
chr1 142618920 rs78490175 C T . PASS . . . . . . 36.19 63.12 472 1000.00 2.46 25.21 0 25.21 0/1
chr1 142618940 rs72995752 C T . PASS . . . . . . 36.2 63.12 551 1000.00 4.89 21.78 0 21.78 0/1
chr1 142618988 rs75162317 A C . PASS . . . . . . 37.0 57.88 441 1000.00 3.55 14.97 0 14.97 0/1
chr1 142618990 rs373022888 C T . PASS . . . . . . 36.59 58.39 429 1000.00 7.06 13.75 0 13.75 0/1
chr1 142619020 rs61806575 G A . PASS . . . . . . 36.22 68.8 257 1000.00 1.63 47.86 0 47.86 0/1
chr1 142619144 rs4295900 C T . PASS . . . . . . 37.0 67.14 30 169.63 21.90 23.33 0 23.33 0/1
chr1 142619169 rs4300240 C G . PASS 0.9592000 0.9957000 1.0000000 1.0000000 1.0000000 0.9886000 37.0 66.19 21 837.55 0.00 100.00 0 100.00 1/1
chr1 142619185 rs12408793 A T . PASS . . . . . . 37.0 68.8 14 130.10 14.29 35.71 0 35.71 0/1
chr1 142620969 rs3120210 G C . PASS . . . . . . 34.33 53.33 21 252.09 19.05 42.86 0 42.86 0/1
chr1 142620975 rs61806579 T G . PASS 0.4251000 0.4914000 0.4673000 0.4851000 0.4622000 0.4621000 37.0 62.22 26 222.29 36.54 30.77 0 34.62 0/1
chr1 142620997 rs6600650 C T . PASS . . . . . . 37.0 69.0 29 256.17 35.25 31.03 0 31.03 0/1
chr1 142621095 rs4241034 T C . PASS 0.4486000 0.4971000 0.4762000 0.4950000 0.4744000 0.4752000 36.57 51.54 33 1000.00 9.09 84.85 0 84.85 0/1
chr1 142689910 rs201076097 T TC . PASS . . . . . . 37.0 52.47 51 592.07 11.35 37.25 0 37.25 0/1
chr1 142689916 . G T . PASS 0.0023000 0.0043000 0.0010000 0.0020000 0.0020000 0.0021965 35.29 52.29 58 69.19 2.96 12.07 0 12.07 0/1
chr1 142713152 rs142135372 T G . PASS 0.1785000 0.7550000 0.4097000 0.7475000 0.4959000 0.4812000 37.0 55.31 15 461.24 10.26 86.67 0 86.67 0/1
chr1 142713524 . T C . PASS . . . . . . 36.08 39.69 27 417.27 7.41 48.15 0 48.15 0/1
chr1 142713691 . T C . PASS . . . . . . 37.0 45.95 161 318.35 9.25 12.42 0 12.42 0/1
chr1 142713742 . A G . PASS . . . . . . 36.14 47.14 63 350.70 53.97 22.22 0 22.22 0/1
chr1 142727018 rs72995781 G A . PASS . . . . . . 35.29 42.43 123 158.09 21.60 11.38 0 11.38 0/1
chr1 142727090 rs112164832 G A . PASS . . . . . . 36.08 44.0 102 191.52 7.39 12.75 0 12.75 0/1
chr1 142727161 rs10453897 C T . PASS . . . . . . 37.0 61.2 33 77.05 41.21 15.15 0 15.15 0/1
chr1 142729818 . A G . PASS . . . . . . 37.0 62.57 12 223.80 7.14 58.33 0 58.33 0/1
chr1 142729820 . T G . PASS . . . . . . 37.0 62.57 13 216.64 4.40 53.85 0 53.85 0/1
chr1 142729889 rs10430210 T C . PASS . . . . . . 36.45 55.95 38 760.09 15.79 57.89 0 57.89 0/1
chr1 142729959 rs375819488 G A . PASS 0.1936000 0.5202000 0.2817000 0.5239000 0.2965000 0.3015000 35.29 26.07 32 431.98 23.21 43.75 0 43.75 0/1
chr1 142792094 rs200607742 T C . PASS . . . . . . 37.0 59.75 15 89.46 23.33 26.67 0 26.67 0/1
chr1 142792110 rs77134205 T C . PASS . . . . . . 37.0 64.5 18 170.00 11.11 33.33 0 44.44 0/1
chr1 142792235 . T C . PASS . . . . . . 37.0 69.21 108 227.25 28.84 12.96 0 12.96 0/1
chr1 142792406 rs61816010 A G . PASS 0.5847000 0.4539000 0.3958000 0.4801000 0.4693000 0.4850000 36.83 57.31 143 1000.00 8.74 50.35 0 50.35 0/1
chr1 142792418 rs76648109 A G . PASS . . . . . . 37.0 59.8 115 247.95 13.91 13.04 0 13.04 0/1
chr1 142806254 rs114813183 A G . PASS . . . . . . 37.0 67.2 12 140.26 83.33 41.67 0 41.67 0/1
chr1 142810409 rs71213748 C T . PASS . . . . . . 35.29 36.71 38 133.54 15.79 18.42 0 18.42 0/1
chr1 142812955 rs199982663 A C . PASS . . . . . . 37.0 60.83 48 69.53 4.17 12.50 0 12.50 0/1
chr1 142813072 rs375636286 A G . PASS . . . . . . 36.32 53.43 285 1000.00 0.85 18.60 0 18.60 0/1
chr1 142813098 rs200968877 T C . PASS . . . . . . 37.0 52.43 453 1000.00 3.96 21.63 0 21.63 0/1
chr1 142813130 rs201958737 G A . PASS . . . . . . 36.9 42.41 492 1000.00 0.14 23.78 0 23.78 0/1
chr1 142813404 . A T . PASS . . . . . . 36.25 68.0 74 396.98 9.80 21.62 0 21.62 0/1
chr1 142813414 . T G . PASS . . . . . . 37.0 68.88 54 469.17 3.70 29.63 0 29.63 0/1
chr1 142819308 . GCA GTG . PASS . . . . . . 37.0 57.33 10 188.05 20.00 60.00 0 60.00 0/1
chr1 142823571 . G GGT . PASS . . . . . . 34.75 67.0 76 1000.00 18.42 23.68 0 48.68 0/1
chr1 142823591 . G A . PASS . . . . . . 37.0 68.44 56 136.15 10.71 14.29 0 16.07 0/1
chr1 142824953 rs139940416 T C . PASS . . . . . . 33.57 68.14 52 79.40 3.30 13.46 0 13.46 0/1
chr1 142825121 . C A . PASS . . . . . . 37.0 62.83 22 147.79 0.00 27.27 0 27.27 0/1
chr1 142826248 rs374074638 C T . PASS . . . . . . 37.0 51.29 35 154.57 11.43 20.00 0 20.00 0/1
chr1 142826369 rs149192684 C A . PASS . . . . . . 36.58 62.62 104 1000.00 0.52 81.73 0 81.73 0/1
chr1 142826454 rs371347440 A G . PASS . . . . . . 35.4 57.53 108 245.02 7.41 13.89 0 13.89 0/1
chr1 142826519 rs138533879 T A . PASS . . . . . . 36.48 59.35 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 142826663 . A T . PASS . . . . . . 37.0 53.0 12 52.57 83.33 25.00 0 25.00 0/1
chr1 142826670 . T A . PASS 0.0000000 0.0202000 0.0000000 0.0239000 0.0072000 0.0089856 37.0 53.0 10 58.59 80.00 30.00 0 30.00 0/1
chr1 142826675 . A T . PASS . . . . . . 37.0 53.0 12 52.57 66.67 25.00 0 25.00 0/1
chr1 142826688 rs151060359 T G . PASS 0.0809000 0.1571000 0.3194000 0.1700000 0.0726000 0.1558000 34.82 52.45 15 353.69 35.15 73.33 0 73.33 0/1
chr1 142826763 . AAG ACA . PASS . . . . . . 37.0 49.5 20 67.26 60.00 20.00 0 20.00 0/1
chr1 142826804 . GTA GAC . PASS . . . . . . 35.8 58.87 26 55.22 7.69 15.38 1 57.69 0/1
chr1 142826805 rs201451744 T A . PASS 0.2534000 0.3804000 0.4702000 0.3708000 0.2546000 0.3385000 36.14 58.07 23 466.93 1.24 60.87 1 60.87 0/1
chr1 142826847 . C G . PASS . . . . . . 37.0 47.2 23 103.00 46.96 21.74 0 21.74 0/1
chr1 142826849 . C A . PASS . . . . . . 37.0 41.5 23 61.23 86.96 17.39 0 17.39 0/1
chr1 142826855 . G A . PASS . . . . . . 37.0 41.5 22 68.39 81.82 18.18 0 18.18 0/1
chr1 142827042 rs200601854 T G . PASS . . . . . . 37.0 50.67 68 510.57 3.59 26.47 0 26.47 0/1
chr1 142827044 rs199751716 G A . PASS . . . . . . 35.91 54.64 68 657.78 2.67 32.35 0 32.35 0/1
chr1 142827075 . G A . PASS . . . . . . 36.0 49.5 92 179.86 10.14 13.04 0 13.04 0/1
chr1 142827207 rs200556647 G A . PASS . . . . . . 35.0 35.33 12 170.02 0.00 50.00 0 50.00 0/1
chr1 142849807 . G A . PASS . . . . . . 34.6 43.4 24 92.13 11.67 20.83 0 20.83 0/1
chr1 142871812 rs145026561 G A . PASS . . . . . . 36.25 54.0 26 545.59 7.69 61.54 0 61.54 0/1
chr1 142888752 rs139722647 A G . PASS . . . . . . 37.0 64.9 42 1000.00 0.48 95.24 0 95.24 1/1
chr1 142888871 . A G . PASS . . . . . . 35.5 48.88 43 160.25 39.53 18.60 0 18.60 0/1
chr1 142888930 rs145951289 G T . PASS . . . . . . 37.0 50.33 10 58.59 20.00 30.00 0 30.00 0/1
chr1 142890754 rs374955974 T C . PASS . . . . . . 37.0 44.0 21 113.17 20.95 23.81 0 23.81 0/1
chr1 142890773 rs372911533 C G . PASS . . . . . . 37.0 44.0 38 57.86 2.11 13.16 0 13.16 0/1
chr1 142890805 rs192362005 T G . PASS . . . . . . 37.0 44.09 86 164.00 26.00 12.79 0 12.79 0/1
chr1 142890830 . G A . PASS . . . . . . 37.0 46.33 138 53.40 3.62 8.70 0 8.70 0/1
chr1 142890833 . C T . PASS . . . . . . 36.76 45.8 140 1000.00 2.24 35.00 0 35.00 0/1
chr1 142890842 . TGT TGC . PASS . . . . . . 36.87 47.57 166 363.13 4.19 15.06 0 27.71 0/1
chr1 142890842 . TGT TAT . PASS . . . . . . 36.87 47.57 166 363.13 14.86 12.65 0 27.71 0/1
chr1 142890881 rs148481898 T C . PASS . . . . . . 37.0 45.58 234 56.84 0.40 8.12 0 8.12 0/1
chr1 142890910 rs142613568 C G . PASS . . . . . . 35.74 45.26 213 91.89 10.43 8.92 0 8.92 0/1
chr1 142890935 . A AC . PASS . . . . . . 36.29 46.98 217 1000.00 7.03 22.12 0 22.12 0/1
chr1 142890972 rs141531557 G A . PASS . . . . . . 36.77 50.83 174 1000.00 8.57 30.46 0 30.46 0/1
chr1 142890983 . CGC CCT . PASS . . . . . . 36.37 53.68 159 281.47 15.43 11.95 0 12.58 0/1
chr1 142891025 . GCC GTC . PASS . . . . . . 36.7 51.6 86 54.88 8.72 9.30 0 23.26 0/1
chr1 142891025 . GCC GCT . PASS . . . . . . 36.7 51.6 86 54.88 0.39 13.95 0 23.26 0/1
chr1 142891032 rs201970606 G A . PASS . . . . . . 37.0 54.5 76 323.56 18.42 18.42 0 18.42 0/1
chr1 142891038 rs144758356 A C . PASS . . . . . . 37.0 53.73 68 385.28 25.29 22.06 0 22.06 0/1
chr1 142891057 . G T . PASS . . . . . . 37.0 53.5 47 72.54 12.77 12.77 0 12.77 0/1
chr1 142891076 . G T . PASS . . . . . . 37.0 53.5 22 64.24 18.18 18.18 0 18.18 0/1
chr1 142914749 rs77612636 C A . PASS . . . . . . 37.0 69.33 11 55.58 18.18 27.27 0 27.27 0/1
chr1 142914758 rs71527320 G A . PASS . . . . . . 37.0 69.75 11 101.50 18.18 36.36 0 36.36 0/1
chr1 142914837 rs372414602 C T . PASS . . . . . . 37.0 69.5 42 91.74 14.29 14.29 0 14.29 0/1
chr1 142914847 rs61814404 T C . PASS . . . . . . 37.0 66.56 54 932.79 3.70 50.00 0 50.00 0/1
chr1 142914872 rs78182557 T A . PASS . . . . . . 37.0 69.53 87 411.63 16.23 19.54 0 19.54 0/1
chr1 142914874 rs75433903 G T . PASS . . . . . . 36.33 69.5 93 423.32 11.83 19.35 0 19.35 0/1
chr1 142914884 rs61814405 T A . PASS . . . . . . 36.64 69.21 108 1000.00 19.87 30.56 0 30.56 0/1
chr1 142914904 rs34276747 T G . PASS . . . . . . 37.0 67.06 122 264.51 6.56 13.11 0 13.11 0/1
chr1 142914952 rs71660176 G C . PASS . . . . . . 36.14 69.07 117 183.99 6.59 11.97 0 11.97 0/1
chr1 142914974 rs375111986 C A . PASS . . . . . . 36.2 69.73 78 343.16 7.18 19.23 0 19.23 0/1
chr1 142914976 rs76074568 C T . PASS . . . . . . 37.0 69.67 77 362.32 8.31 19.48 0 19.48 0/1
chr1 142914994 rs76995737 G A . PASS . . . . . . 35.29 69.29 42 682.26 9.52 50.00 0 50.00 0/1
chr1 142915004 . C T . PASS . . . . . . 34.33 69.22 37 208.07 4.20 24.32 0 24.32 0/1
chr1 142915013 . TGG TTT . PASS . . . . . . 36.37 69.32 35 639.69 1.20 54.29 1 54.29 0/1
chr1 142915014 rs77307550 G T . PASS . . . . . . 35.74 69.32 31 639.69 1.02 61.29 1 61.29 0/1
chr1 142915015 rs76762492 G T . PASS . . . . . . 37.0 69.32 31 663.71 1.02 61.29 1 61.29 0/1
chr1 142915019 rs75436540 C T . PASS . . . . . . 36.29 69.24 31 572.31 4.55 54.84 0 54.84 0/1
chr1 142915056 rs74226778 T C . PASS . . . . . . 37.0 69.0 12 307.35 5.56 75.00 0 75.00 0/1
chr1 142925244 rs148247278 A T . PASS . . . . . . 34.6 48.2 12 124.10 13.33 41.67 0 41.67 0/1
chr1 142925256 rs139435746 A G . PASS . . . . . . 34.0 44.38 11 244.56 27.27 72.73 0 72.73 0/1
chr1 143119012 rs202117766 A C . PASS . . . . . . 36.14 38.18 47 967.46 25.53 59.57 0 59.57 0/1
chr1 143119035 rs200126281 T C . PASS . . . . . . 36.08 35.69 71 284.84 22.75 18.31 0 18.31 0/1
chr1 143119061 . C G . PASS . . . . . . 36.0 58.42 121 88.43 5.65 9.92 0 9.92 0/1
chr1 143119101 . A G . PASS . . . . . . 37.0 39.12 163 580.99 1.84 15.95 0 19.63 0/1
chr1 143119174 rs201824276 G T . PASS . . . . . . 36.4 40.3 93 506.86 5.91 21.51 0 21.51 0/1
chr1 143119228 . G A . PASS . . . . . . 37.0 44.0 14 50.70 52.38 21.43 0 21.43 0/1
chr1 143136010 rs202083782 TA T . PASS . . . . . . 36.4 57.3 15 324.52 0.00 66.67 0 66.67 0/1
chr1 143136150 rs200353162 A G . PASS . . . . . . 36.2 55.87 100 281.11 28.00 15.00 0 15.00 0/1
chr1 143136203 rs200230717 A T . PASS 0.0000000 0.0000000 0.0000000 0.0000000 0.0031000 0.0005990 35.0 48.17 37 329.25 43.24 32.43 0 32.43 0/1
chr1 143188412 rs200944354 G C . PASS . . . . . . 37.0 63.0 13 174.87 12.82 46.15 0 46.15 0/1
chr1 143188470 rs200631320 C T . PASS . . . . . . 36.14 62.79 26 462.05 6.59 53.85 0 53.85 0/1
chr1 143188556 rs145795485 C T . PASS . . . . . . 37.0 56.09 18 372.82 1.01 61.11 0 61.11 0/1
chr1 143188558 rs61784870 C A . PASS . . . . . . 37.0 65.5 18 76.28 5.56 22.22 0 22.22 0/1
chr1 143209415 rs139708986 T G . PASS 0.2526000 0.1196000 0.0208000 0.1014000 0.0716000 0.1218000 37.0 48.17 12 177.89 16.67 50.00 0 50.00 0/1
chr1 143209522 . T C . PASS . . . . . . 37.0 39.75 23 65.38 63.04 17.39 0 17.39 0/1
chr1 143209526 rs201519616 GTCTT G . PASS . . . . . . 37.0 39.6 22 100.60 78.18 22.73 0 22.73 0/1
chr1 143209585 rs201388665 C A . PASS . . . . . . 37.0 45.43 21 192.56 66.67 33.33 0 33.33 0/1
chr1 143209642 rs202056042 G A . PASS 0.0000000 0.0014000 0.0317000 0.0000000 0.0010000 0.0067891 37.0 41.83 21 154.94 19.05 28.57 0 28.57 0/1
chr1 143209652 rs200157937 C T . PASS . . . . . . 37.0 60.8 22 110.17 81.82 22.73 0 22.73 0/1
chr1 143209688 . ATT ACC . PASS . . . . . . 35.67 41.56 43 139.56 44.52 16.28 1 20.93 0/1
chr1 143209689 . T C . PASS . . . . . . 35.67 41.56 34 229.11 46.41 26.47 1 26.47 0/1
chr1 143209692 rs200938158 A T . PASS . . . . . . 36.43 53.29 42 702.14 23.81 50.00 0 50.00 0/1
chr1 143209711 . C G . PASS . . . . . . 37.0 40.57 54 93.24 36.51 12.96 0 12.96 0/1
chr1 143209759 rs199989791 C T . PASS . . . . . . 36.16 55.65 85 1000.00 1.20 50.59 0 50.59 0/1
chr1 143209762 . T TA . PASS . . . . . . 36.71 55.66 81 1000.00 1.20 50.62 0 50.62 0/1
chr1 143209765 rs200955831 G T . PASS . . . . . . 37.0 55.31 83 1000.00 6.59 59.04 0 59.04 0/1
chr1 143209767 rs201941431 G C . PASS . . . . . . 36.78 55.75 84 1000.00 6.71 65.48 0 65.48 0/1
chr1 143209808 rs79604104 T G . PASS . . . . . . 36.04 56.7 77 1000.00 4.31 64.94 0 64.94 0/1
chr1 143209844 rs79704978 A T . PASS . . . . . . 34.6 58.0 36 51.88 21.11 13.89 0 13.89 0/1
chr1 143209849 rs76618926 C T . PASS . . . . . . 35.8 62.25 32 682.61 12.50 62.50 0 62.50 0/1
chr1 143209851 rs75424011 T G . PASS . . . . . . 37.0 64.45 29 180.53 4.93 24.14 0 37.93 0/1
chr1 143209883 rs80096566 G T . PASS . . . . . . 37.0 55.6 11 139.12 14.55 45.45 0 45.45 0/1
chr1 143209912 rs75258140 G C . PASS . . . . . . 37.0 46.0 11 55.58 72.73 27.27 0 27.27 0/1
chr1 143209993 . T C . PASS . . . . . . 31.0 56.5 15 65.44 40.00 26.67 0 26.67 0/1
chr1 143210112 rs144111332 C T . PASS . . . . . . 37.0 53.22 47 201.99 85.11 19.15 0 19.15 0/1
chr1 143210174 rs78780536 C G . PASS . . . . . . 36.25 58.25 47 478.24 64.89 34.04 0 34.04 0/1
chr1 143210184 rs150660353 G A . PASS . . . . . . 37.0 61.22 47 202.00 88.42 19.15 0 19.15 0/1
chr1 143210193 . G GT . PASS . . . . . . 37.0 59.31 50 428.02 58.67 30.00 0 30.00 0/1
chr1 143210293 . T C . PASS . . . . . . 37.0 58.37 37 983.96 9.21 72.97 0 72.97 0/1
chr1 143210303 rs200470171 T G . PASS . . . . . . 36.59 57.0 35 1000.00 7.29 82.86 0 82.86 0/1
chr1 143210327 . C T . PASS . . . . . . 37.0 58.4 25 727.69 6.00 80.00 0 80.00 0/1
chr1 143210343 rs142396925 C T . PASS . . . . . . 37.0 56.55 14 384.87 7.79 78.57 0 78.57 0/1
chr1 143213156 rs146236530 T G . PASS 0.0045000 0.0447000 0.0000000 0.0696000 0.0031000 0.0220000 35.67 67.11 23 258.08 2.90 39.13 0 39.13 0/1
chr1 143217375 . T C . PASS . . . . . . 37.0 50.5 28 50.33 0.00 14.29 0 14.29 0/1
chr1 143217425 rs371757210 TTAGA T . PASS . . . . . . 35.5 57.12 15 237.98 1.67 53.33 0 53.33 0/1
chr1 143223230 rs202198984 A G . PASS . . . . . . 37.0 66.12 30 211.39 0.00 26.67 0 26.67 0/1
chr1 143223322 rs200234152 T C . PASS . . . . . . 36.43 49.14 70 622.01 0.95 30.00 0 30.00 0/1
chr1 143223423 rs200205288 T A . PASS . . . . . . 37.0 56.2 23 311.85 49.57 43.48 0 43.48 0/1
chr1 143226345 rs139354267 T G . PASS . . . . . . 37.0 49.8 11 139.13 10.91 45.45 0 45.45 0/1
chr1 143230302 . C T . PASS . . . . . . 37.0 64.86 21 196.71 38.10 33.33 0 33.33 0/1
chr1 143230315 . G A . PASS . . . . . . 35.5 60.0 26 211.42 34.62 30.77 0 30.77 0/1
chr1 143230361 rs199651539 T A . PASS . . . . . . 33.73 54.73 53 227.31 18.52 20.75 0 20.75 0/1
chr1 143230377 rs200465879 T C . PASS . . . . . . 37.0 54.73 58 252.44 19.44 18.97 0 18.97 0/1
chr1 143230471 . T C . PASS . . . . . . 37.0 69.81 24 563.62 0.00 66.67 0 66.67 0/1
chr1 143243916 rs4061254 A T . PASS . . . . . . 37.0 69.73 31 329.55 38.71 35.48 0 35.48 0/1
chr1 143243998 rs189254144 A G . PASS 0.0000000 0.0014000 0.0000000 0.0119000 0.0010000 0.0027955 36.45 69.0 88 1000.00 4.55 50.00 0 50.00 0/1
chr1 143244014 rs35885859 A T . PASS 0.3041000 0.3991000 0.6290000 0.3141000 0.5337000 0.4295000 37.0 69.75 104 318.69 21.15 15.38 0 15.38 0/1
chr1 143244067 rs202176415 T A . PASS . . . . . . 37.0 69.85 87 244.55 67.37 14.94 0 14.94 0/1
chr1 143344320 rs77936640 AG A . PASS . . . . . . 37.0 51.56 10 265.11 20.00 80.00 0 90.00 0/1
chr1 143344375 rs9970967 G A . PASS . . . . . . 37.0 68.09 36 318.64 38.89 30.56 0 30.56 0/1
chr1 143344377 rs75302130 C T . PASS . . . . . . 35.91 50.64 38 748.08 21.53 57.89 0 57.89 0/1
chr1 143344382 . CGA CAG . PASS . . . . . . 35.86 55.33 43 172.30 3.49 18.60 0 100.00 0/1
chr1 143344382 . CGA CGG . PASS . . . . . . 35.86 55.33 43 172.30 0.80 81.40 0 100.00 0/1
chr1 143344413 . C T . PASS . . . . . . 37.0 56.42 96 472.21 13.49 19.79 0 19.79 0/1
chr1 143344513 . C A . PASS . . . . . . 35.5 51.88 72 68.82 8.33 11.11 0 11.11 0/1
chr1 143344521 rs199835576 G A . PASS . . . . . . 35.67 54.89 65 135.81 33.16 13.85 0 13.85 0/1
chr1 143344569 . A G . PASS . . . . . . 37.0 69.0 15 89.46 0.00 26.67 0 26.67 0/1
chr1 143378355 . G A . PASS . . . . . . 34.6 33.4 30 74.08 26.67 16.67 0 16.67 0/1
chr1 143378397 rs199683859 A T . PASS . . . . . . 37.0 36.2 23 103.00 0.00 21.74 0 21.74 0/1
chr1 143378404 rs140846070 T A . PASS . . . . . . 34.6 36.2 23 91.00 0.00 21.74 0 21.74 0/1
chr1 143378409 rs147226760 A T . PASS . . . . . . 34.6 36.2 21 97.02 0.00 23.81 0 23.81 0/1
chr1 143378853 rs200183428 C T . PASS . . . . . . 37.0 64.5 13 95.48 7.69 30.77 0 30.77 0/1
chr1 143392653 . CTAAG C . PASS . . . . . . 35.8 36.8 14 106.64 5.71 35.71 0 35.71 0/1
chr1 143392661 . G A . PASS . . . . . . 34.6 36.8 18 110.20 2.22 27.78 0 27.78 0/1
chr1 143401926 rs1818231 C G . PASS 0.9826000 0.6470000 0.7004000 0.6809000 0.7515000 0.7736000 36.2 59.6 15 574.91 0.00 100.00 0 100.00 1/1
chr1 143501829 rs115798048 T A . PASS . . . . . . 36.47 29.42 70 1000.00 1.59 64.29 0 64.29 0/1
chr1 143501950 rs61800235 G T . PASS . . . . . . 37.0 45.59 44 541.04 16.84 38.64 0 38.64 0/1
chr1 143501961 rs61800236 A G . PASS . . . . . . 35.29 51.64 35 422.96 31.43 40.00 0 40.00 0/1
chr1 143744160 rs61823125 G A . PASS . . . . . . 36.25 62.42 88 1000.00 15.91 54.55 0 54.55 0/1
chr1 143744411 rs140521978 G C . PASS . . . . . . 35.0 64.67 16 153.84 20.83 37.50 0 37.50 0/1
chr1 143744418 . C T . PASS . . . . . . 37.0 58.25 14 92.48 14.29 28.57 0 28.57 0/1
chr1 143767513 rs6604511 A T . PASS . . . . . . 36.41 60.29 181 1000.00 14.31 22.65 0 22.65 0/1
chr1 143767522 rs6604512 A G . PASS . . . . . . 36.68 60.74 187 979.97 5.80 20.32 0 20.32 0/1
chr1 143767547 rs2490183 G A . PASS 0.4092000 0.3790000 0.3284000 0.3260000 0.4233000 0.3748000 37.0 57.26 180 386.45 5.46 12.78 0 12.78 0/1
chr1 143914163 rs148754361 T C . PASS . . . . . . 37.0 66.44 146 655.90 33.89 18.49 0 18.49 0/1
chr1 143939008 rs376240827 CA C . PASS 0.5189000 0.4741000 0.4484000 0.4573000 0.4550000 0.4736000 36.79 61.17 61 979.70 10.63 47.54 0 47.54 0/1
chr1 144013853 rs6600697 T C . PASS . . . . . . 36.52 70.0 161 1000.00 0.32 31.06 0 31.06 0/1
chr1 144013865 rs6600696 T G . PASS . . . . . . 36.56 70.0 181 1000.00 1.63 30.39 0 30.39 0/1
chr1 144014051 rs1884147 G A . PASS . . . . . . 36.64 69.9 619 1000.00 1.25 32.63 0 32.63 0/1
chr1 144014068 rs1884146 T C . PASS . . . . . . 36.64 69.95 547 1000.00 2.12 67.28 0 67.28 0/1
chr1 144014234 rs6600695 A G . PASS . . . . . . 37.0 70.0 27 387.51 0.00 44.44 0 44.44 0/1
chr1 144014253 rs6600694 A T . PASS . . . . . . 37.0 70.0 19 490.98 0.00 73.68 0 73.68 0/1
chr1 144044056 rs6600677 C T . PASS . . . . . . 36.44 60.23 146 1000.00 0.13 29.45 0 29.45 0/1
chr1 144044114 rs6600676 C T . PASS . . . . . . 37.0 65.38 128 1000.00 0.00 31.25 0 31.25 0/1
chr1 144051161 rs77196483 AT A . PASS 0.4947000 0.4928000 0.4613000 0.4771000 0.4959000 0.4844000 36.74 66.82 128 1000.00 7.81 39.06 0 39.06 0/1
chr1 144148910 . T G . PASS . . . . . . 36.47 59.89 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 144148918 . A G . PASS . . . . . . 37.0 62.89 35 238.12 0.00 25.71 0 25.71 0/1
chr1 144148923 . G A . PASS . . . . . . 37.0 62.0 31 208.39 6.45 25.81 0 25.81 0/1
chr1 144148928 . G C . PASS . . . . . . 37.0 62.0 27 216.27 7.41 29.63 0 29.63 0/1
chr1 144148945 . A G . PASS . . . . . . 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 144364195 rs200241118 T C . PASS . . . . . . 35.5 47.5 12 253.56 0.00 66.67 0 66.67 0/1
chr1 144510033 rs200517264 C T . PASS . . . . . . 37.0 36.88 28 593.35 1.26 60.71 0 60.71 0/1
chr1 144519860 rs200486718 T C . PASS . . . . . . 37.0 39.6 10 146.28 20.00 50.00 0 50.00 0/1
chr1 144520905 rs3124577 A C . PASS . . . . . . 36.33 47.72 18 700.22 0.00 100.00 0 100.00 1/1
chr1 144585447 rs201160182 C A . PASS . . . . . . 37.0 68.0 15 85.31 0.00 26.67 0 26.67 0/1
chr1 144585462 rs150469221 A G . PASS . . . . . . 35.8 56.2 17 322.06 0.00 58.82 0 58.82 0/1
chr1 144585597 rs142356090 G A . PASS . . . . . . 35.72 68.84 224 1000.00 1.31 33.48 0 33.48 0/1
chr1 144585620 rs76658098 G A . PASS 0.5008000 0.4942000 0.4881000 0.5000000 0.5000000 0.4970000 36.31 57.04 260 1000.00 0.44 26.92 0 26.92 0/1
chr1 144585692 rs201956196 GT G . PASS . . . . . . 36.31 68.67 144 1000.00 11.81 44.44 0 44.44 0/1
chr1 144585723 . TTA TGA . PASS . . . . . . 36.59 61.08 109 766.52 17.87 24.77 0 66.97 0/1
chr1 144585723 . TTA TTG . PASS . . . . . . 36.59 61.08 109 766.52 4.19 42.20 0 66.97 0/1
chr1 144598589 . C T . PASS . . . . . . 37.0 70.0 28 50.33 28.57 14.29 0 14.29 0/1
chr1 144598641 rs1698687 C T . PASS . . . . . . 37.0 64.33 92 818.42 21.18 29.35 0 29.35 0/1
chr1 144598659 rs139801602 C T . PASS . . . . . . 35.74 64.82 123 1000.00 6.85 30.89 0 30.89 0/1
chr1 144598691 rs149760427 C T . PASS . . . . . . 34.88 65.24 149 193.14 7.90 11.41 0 11.41 0/1
chr1 144598755 rs2660554 G A . PASS 0.5000000 0.4986000 0.4940000 0.4930000 0.5000000 0.4972000 35.0 66.21 95 636.04 17.46 25.26 0 25.26 0/1
chr1 144606628 . T C . PASS . . . . . . 34.0 44.75 17 71.43 23.53 23.53 0 23.53 0/1
chr1 144615138 rs9441132 T G . PASS . . . . . . 37.0 51.0 21 276.11 34.92 42.86 0 42.86 0/1
chr1 144615246 rs200815869 A AAG . PASS 0.0703000 0.2709000 0.4583000 0.2247000 0.3231000 0.2566000 34.55 56.73 40 527.39 16.11 45.00 0 45.00 0/1
chr1 144615250 rs202042060 G GAA . PASS 0.0076000 0.1009000 0.2589000 0.0606000 0.0971000 0.0992000 35.91 59.64 38 690.74 9.02 55.26 0 55.26 0/1
chr1 144617119 rs12057892 A C . PASS . . . . . . 37.0 59.17 12 461.62 0.00 100.00 0 100.00 1/1
chr1 144617251 rs12057989 A G . PASS 0.1263000 0.3429000 0.6766000 0.1948000 0.2515000 0.3053000 37.0 63.52 56 1000.00 27.46 51.79 0 51.79 0/1
chr1 144617262 rs4067689 A C . PASS . . . . . . 37.0 36.67 50 63.52 41.33 12.00 0 12.00 0/1
chr1 144617268 rs79609511 A T . PASS . . . . . . 34.33 37.33 52 120.02 15.38 15.38 0 17.31 0/1
chr1 144617352 . A T . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 68.8 17 121.07 23.53 29.41 0 29.41 0/1
chr1 144618070 rs55646423 G A . PASS . . . . . . 35.8 57.2 81 535.12 19.01 24.69 0 24.69 0/1
chr1 144618144 rs61809736 A G . PASS 0.7496000 0.8790000 0.8512000 0.9076000 0.7699000 0.8237000 36.77 51.68 104 1000.00 0.00 100.00 0 100.00 1/1
chr1 144618165 . G A . PASS . . . . . . 37.0 56.22 74 120.73 0.30 12.16 0 12.16 0/1
chr1 144618201 . T C . PASS . . . . . . 37.0 42.67 34 366.44 20.59 35.29 0 35.29 0/1
chr1 144619272 rs112591404 T C . PASS 0.0098000 0.2334000 0.4633000 0.1809000 0.1902000 0.2017000 37.0 58.2 12 140.26 16.67 41.67 0 41.67 0/1
chr1 144619318 . G A . PASS 0.5174000 0.7435000 0.9603000 0.5726000 0.8129000 0.7067000 35.67 65.17 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 144619346 rs4649563 G A . PASS 0.2436000 0.6196000 0.7986000 0.5288000 0.7362000 0.5609000 37.0 66.78 65 1000.00 0.97 83.08 0 83.08 0/1
chr1 144619354 rs4067644 C T . PASS 0.1634000 0.3156000 0.5903000 0.1909000 0.2393000 0.2907000 36.52 64.92 83 749.95 9.93 30.12 0 30.12 0/1
chr1 144619389 rs200114680 A C . PASS . . . . . . 37.0 47.54 107 184.34 0.72 12.15 0 12.15 0/1
chr1 144619401 rs61676308 A G . PASS . . . . . . 37.0 47.61 118 170.42 4.30 11.02 0 15.25 0/1
chr1 144619466 rs182009663 A G . PASS . . . . . . 36.0 51.33 85 200.93 43.92 14.12 0 14.12 0/1
chr1 144619483 rs4067648 A C . PASS 0.4675000 0.6744000 0.8343000 0.5875000 0.7853000 0.6561000 36.49 64.24 71 1000.00 0.00 100.00 0 100.00 1/1
chr1 144619505 rs4067649 A G . PASS . . . . . . 37.0 53.53 54 431.54 11.11 27.78 0 27.78 0/1
chr1 144620091 rs151155946 C T . PASS 0.0666000 0.3256000 0.2411000 0.3469000 0.4990000 0.2784000 36.37 38.32 42 622.75 4.26 45.24 0 45.24 0/1
chr1 144621526 . G A . PASS . . . . . . 37.0 43.82 122 59.80 12.22 9.02 0 9.02 0/1
chr1 144621555 . A G . PASS . . . . . . 36.61 54.77 149 801.92 6.58 20.81 0 20.81 0/1
chr1 144621667 . C T . PASS . . . . . . 37.0 64.07 60 371.71 13.81 23.33 0 23.33 0/1
chr1 144621681 rs199953515 T C . PASS . . . . . . 37.0 65.0 48 115.45 35.71 14.58 0 14.58 0/1
chr1 144621694 . T C . PASS . . . . . . 37.0 65.67 35 112.80 32.38 17.14 0 17.14 0/1
chr1 144621696 . ATA AGG . PASS . . . . . . 37.0 65.67 35 72.91 45.71 14.29 0 17.14 0/1
chr1 144811776 . C T . PASS . . . . . . 34.6 49.4 21 101.16 1.90 23.81 0 23.81 0/1
chr1 144811836 rs320820 G A . PASS 0.9402000 0.9150000 0.9940000 0.8449000 0.8487000 0.9105000 36.29 56.76 17 662.60 0.00 100.00 0 100.00 1/1
chr1 144811842 rs7411539 C G . PASS . . . . . . 36.0 53.42 24 380.39 25.00 50.00 0 50.00 0/1
chr1 144811912 rs3979893 C G . PASS . . . . . . 37.0 56.71 80 599.76 32.86 26.25 0 26.25 0/1
chr1 144811924 rs320821 T G . PASS 1.0000000 0.9856000 1.0000000 0.9722000 0.9857000 0.9896000 36.72 61.15 87 1000.00 0.00 100.00 0 100.00 1/1
chr1 144811969 rs9725786 A T . PASS . . . . . . 36.08 57.12 83 775.57 9.92 31.33 0 31.33 0/1
chr1 144811998 . C G . PASS . . . . . . 37.0 52.72 43 547.05 5.47 39.53 0 41.86 0/1
chr1 144812017 . GGA GAC . PASS . . . . . . 37.0 53.38 21 241.50 13.10 38.10 0 38.10 0/1
chr1 144812025 . G A . PASS . . . . . . 34.0 58.75 17 226.50 1.47 47.06 0 47.06 0/1
chr1 144813815 rs371436644 A G . PASS . . . . . . 37.0 34.67 128 208.81 3.54 11.72 0 11.72 0/1
chr1 144813909 . G A . PASS . . . . . . 35.0 31.17 31 112.84 18.28 19.35 0 19.35 0/1
chr1 144816621 . A G . PASS . . . . . . 37.0 39.7 93 105.31 1.72 10.75 0 10.75 0/1
chr1 144823303 . C A . PASS . . . . . . 35.0 40.33 29 114.71 39.08 20.69 0 20.69 0/1
chr1 144823317 . G T . PASS . . . . . . 37.0 40.33 27 132.73 44.44 22.22 0 22.22 0/1
chr1 144828748 rs144947204 C T . PASS 0.0000000 0.0000000 0.0040000 0.0000000 0.0000000 0.0007987 36.67 48.75 239 739.87 16.25 15.06 0 15.06 0/1
chr1 144828763 . GGA GTT . PASS . . . . . . 36.72 49.26 233 882.50 9.86 16.74 0 18.45 0/1
chr1 144828784 rs78667364 A G . PASS . . . . . . 36.14 48.57 180 1000.00 3.02 23.33 0 23.33 0/1
chr1 144828910 rs12124435 A T . PASS . . . . . . 37.0 57.2 17 121.07 11.76 29.41 0 29.41 0/1
chr1 144828923 . A G . PASS . . . . . . 37.0 59.0 12 56.72 50.00 25.00 0 25.00 0/1
chr1 144852203 rs74872612 T G . PASS . . . . . . 34.6 54.4 16 112.06 12.50 31.25 0 31.25 0/1
chr1 144852234 . ATC ACG . PASS . . . . . . 37.0 55.56 28 216.27 7.14 32.14 0 32.14 0/1
chr1 144852249 rs1055317 C T . PASS . . . . . . 35.91 56.09 32 318.68 6.82 34.38 0 34.38 0/1
chr1 144852254 rs77608804 G C . PASS . . . . . . 37.0 56.17 33 365.30 13.64 36.36 0 36.36 0/1
chr1 144852321 rs1055315 C A . PASS . . . . . . 35.38 61.33 108 1000.00 2.99 48.15 0 48.15 0/1
chr1 144852390 rs61804988 C T . PASS . . . . . . 36.65 64.89 233 1000.00 2.51 43.78 0 43.78 0/1
chr1 144852476 rs1616066 T C . PASS 0.5008000 0.5000000 0.5000000 0.5000000 0.5000000 0.5002000 36.42 65.06 139 1000.00 10.10 44.60 0 44.60 0/1
chr1 144852545 rs1699760 C T . PASS . . . . . . 37.0 66.16 42 634.75 2.26 45.24 0 45.24 0/1
chr1 144853063 rs112258980 C T . PASS . . . . . . 37.0 69.0 13 53.71 0.00 23.08 0 23.08 0/1
chr1 144853214 rs1698587 A G . PASS 0.5113000 0.5101000 0.5030000 0.5080000 0.5072000 0.5080000 36.51 67.69 115 1000.00 0.57 42.61 0 42.61 0/1
chr1 144854046 . CCCC CTGG . PASS . . . . . . 37.0 69.0 28 180.52 0.00 25.00 1 25.00 0/1
chr1 144854047 . C T . PASS 0.0053000 0.0072000 0.0040000 0.0040000 0.0051000 0.0049920 37.0 63.62 26 223.44 11.54 30.77 1 30.77 0/1
chr1 144854049 . C G . PASS 0.0053000 0.0072000 0.0040000 0.0040000 0.0051000 0.0049920 37.0 63.62 26 219.28 11.54 30.77 1 30.77 0/1
chr1 144854052 rs1698584 G A . PASS 0.5038000 0.5029000 0.5010000 0.5040000 0.5041000 0.5032000 37.0 67.05 30 712.64 3.33 66.67 0 66.67 0/1
chr1 144854083 rs1699758 G A . PASS . . . . . . 36.65 69.12 75 1000.00 9.41 45.33 0 45.33 0/1
chr1 144854087 rs4997150 A G . PASS . . . . . . 37.0 66.9 77 571.17 6.88 25.97 0 25.97 0/1
chr1 144854095 rs4997149 G T . PASS . . . . . . 36.43 67.0 78 593.79 0.37 26.92 0 26.92 0/1
chr1 144854180 rs4997148 T C . PASS . . . . . . 36.29 68.31 172 1000.00 2.39 29.65 0 29.65 0/1
chr1 144854245 rs4997147 C T . PASS . . . . . . 35.63 68.2 107 1000.00 2.03 32.71 0 32.71 0/1
chr1 144854277 rs1699757 A G . PASS . . . . . . 36.54 68.67 67 1000.00 0.69 77.61 0 77.61 0/1
chr1 144854351 rs599643 A C . PASS 0.9531000 0.9222000 0.9514000 0.8549000 0.8988000 0.9181000 37.0 69.9 20 795.78 0.00 100.00 0 100.00 1/1
chr1 144854380 rs2798857 T C . PASS . . . . . . 37.0 70.0 16 128.22 47.50 31.25 0 31.25 0/1
chr1 144854397 rs833193 T C . PASS 0.9009000 0.9308000 0.9504000 0.8628000 0.9018000 0.9075000 37.0 69.67 21 841.70 0.00 100.00 0 100.00 1/1
chr1 144854412 rs77812232 A C . PASS 0.5008000 0.5014000 0.5188000 0.5080000 0.5051000 0.5068000 37.0 69.62 25 222.30 7.00 32.00 0 32.00 0/1
chr1 144854491 rs2798856 T G . PASS . . . . . . 37.0 69.89 100 1000.00 4.22 36.00 0 36.00 0/1
chr1 144854497 rs2653676 A G . PASS . . . . . . 36.41 69.8 105 1000.00 2.93 39.05 0 39.05 0/1
chr1 144854528 rs78461771 A G . PASS . . . . . . 36.08 62.79 139 1000.00 13.36 28.06 0 28.06 0/1
chr1 144854537 rs3851872 T C . PASS . . . . . . 36.71 62.98 153 1000.00 9.80 27.45 0 27.45 0/1
chr1 144854581 rs78371650 T C . PASS . . . . . . 36.69 65.95 175 1000.00 8.79 22.29 0 22.29 0/1
chr1 144854594 rs79028512 G T . PASS 0.5408000 0.3804000 0.4464000 0.3191000 0.4693000 0.4411000 36.38 66.28 174 1000.00 7.60 22.41 0 22.41 0/1
chr1 144854596 . GTC GCC . PASS . . . . . . 36.69 68.4 177 1000.00 2.59 23.16 0 55.37 0/1
chr1 144854596 . GTC GCT . PASS . . . . . . 36.69 68.4 177 1000.00 6.18 32.20 0 55.37 0/1
chr1 144854608 rs2798855 T G . PASS . . . . . . 37.0 69.86 161 63.59 21.74 8.70 0 8.70 0/1
chr1 144854730 rs75855616 A G . PASS . . . . . . 36.48 67.52 55 750.70 9.17 41.82 0 41.82 0/1
chr1 144854750 rs75538208 G A . PASS . . . . . . 35.11 67.21 46 586.68 6.64 41.30 0 41.30 0/1
chr1 144854761 rs79445592 T C . PASS . . . . . . 36.0 66.17 33 357.43 3.03 36.36 0 36.36 0/1
chr1 144854765 rs78741893 T C . PASS . . . . . . 36.0 66.17 31 363.46 5.38 38.71 0 38.71 0/1
chr1 144854793 rs5004098 C T . PASS . . . . . . 37.0 70.0 13 137.25 0.00 38.46 0 38.46 0/1
chr1 144854795 rs2861512 G A . PASS . . . . . . 37.0 60.5 14 92.47 0.00 28.57 0 28.57 0/1
chr1 144854799 rs5004097 C T . PASS . . . . . . 34.0 70.0 12 86.48 0.00 33.33 0 33.33 0/1
chr1 144855812 rs1699754 T C . PASS . . . . . . 36.23 61.39 127 856.13 1.02 24.41 0 24.41 0/1
chr1 144855866 rs1698582 A G . PASS . . . . . . 37.0 64.27 84 633.65 14.50 26.19 0 26.19 0/1
chr1 144855935 rs1698581 A G . PASS . . . . . . 37.0 64.07 29 506.80 4.14 51.72 0 51.72 0/1
chr1 144856900 rs144438268 C T . PASS . . . . . . 37.0 63.6 143 581.37 2.29 17.48 0 17.48 0/1
chr1 144857068 rs905324 A T . PASS . . . . . . 36.48 68.65 38 797.71 9.38 60.53 0 60.53 0/1
chr1 144857876 rs1698578 T G . PASS . . . . . . 37.0 69.0 12 177.88 0.00 50.00 0 50.00 0/1
chr1 144859720 rs678786 G C . PASS 0.9939000 0.9078000 0.9960000 0.8290000 0.8640000 0.9239000 36.76 69.73 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 144860026 rs1699819 G C . PASS . . . . . . 37.0 68.5 33 615.92 11.11 54.55 0 54.55 0/1
chr1 144863208 rs1699813 A G . PASS 0.5507000 0.5115000 0.5050000 0.5209000 0.5225000 0.5246000 37.0 63.53 41 554.21 1.15 41.46 0 41.46 0/1
chr1 144863320 rs139822181 T C . PASS . . . . . . 36.64 65.64 178 798.19 3.92 18.54 0 18.54 0/1
chr1 144863505 rs642016 A G . PASS . . . . . . 36.33 64.89 51 553.88 7.84 35.29 0 35.29 0/1
chr1 144864126 rs113961309 C T . PASS . . . . . . 36.0 67.17 102 639.00 2.45 23.53 0 23.53 0/1
chr1 144864143 rs112629810 G A . PASS . . . . . . 36.11 66.48 109 743.23 12.03 24.77 0 24.77 0/1
chr1 144865850 rs1613780 G T . PASS . . . . . . 37.0 69.02 201 1000.00 4.31 46.77 0 46.77 0/1
chr1 144866509 rs924667 G A . PASS . . . . . . 35.8 70.0 21 310.01 0.00 47.62 0 47.62 0/1
chr1 144866643 rs1620560 G A . PASS . . . . . . 36.45 70.0 233 1000.00 1.08 47.21 0 47.21 0/1
chr1 144866662 rs1064044 T C . PASS . . . . . . 36.89 70.0 228 1000.00 2.63 50.00 0 50.00 0/1
chr1 144867841 rs143223294 T C . PASS . . . . . . 37.0 69.83 20 157.95 10.00 30.00 0 30.00 0/1
chr1 144868170 rs1628310 C T . PASS . . . . . . 37.0 69.46 77 1000.00 9.12 50.65 0 50.65 0/1
chr1 144868204 rs1747951 A C . PASS . . . . . . 37.0 70.0 48 779.63 5.80 47.92 0 47.92 0/1
chr1 144871738 rs1698605 C A . PASS . . . . . . 36.28 68.94 122 1000.00 0.61 54.92 0 54.92 0/1
chr1 144871755 rs1778159 A T . PASS . . . . . . 36.34 69.26 131 1000.00 6.40 55.73 0 55.73 0/1
chr1 144871782 rs1778158 A G . PASS . . . . . . 36.81 69.27 139 1000.00 2.41 46.04 0 46.04 0/1
chr1 144871829 rs111761861 C T . PASS 0.0605000 0.0144000 0.0734000 0.0179000 0.0327000 0.0427000 37.0 69.57 143 706.71 6.29 19.58 0 19.58 0/1
chr1 144871889 rs1698606 A C . PASS . . . . . . 36.52 69.92 59 818.04 11.25 42.37 0 42.37 0/1
chr1 144873794 rs1610833 C T . PASS . . . . . . 36.4 70.0 56 622.37 4.29 35.71 0 35.71 0/1
chr1 144873811 rs147417095 A G . PASS 0.0514000 0.0144000 0.0734000 0.0179000 0.0327000 0.0403000 36.45 70.0 82 627.67 2.88 26.83 0 26.83 0/1
chr1 144873818 rs1610566 A G . PASS . . . . . . 36.33 70.0 95 1000.00 11.23 37.89 0 37.89 0/1
chr1 144873840 rs1627335 A G . PASS . . . . . . 35.88 69.93 117 1000.00 3.94 36.75 0 36.75 0/1
chr1 144873887 rs1699787 C T . PASS . . . . . . 35.97 69.74 149 1000.00 3.36 38.93 0 38.93 0/1
chr1 144874038 rs1419160 T C . PASS . . . . . . 37.0 69.44 47 494.39 9.84 34.04 0 34.04 0/1
chr1 144874070 rs1610565 C T . PASS . . . . . . 37.0 69.25 18 80.43 55.56 22.22 0 22.22 0/1
chr1 144874088 rs1419158 G C . PASS . . . . . . 34.6 69.2 15 115.07 40.00 33.33 0 33.33 0/1
chr1 144874641 rs1610771 G C . PASS . . . . . . 35.29 69.5 42 397.73 0.00 33.33 0 33.33 0/1
chr1 144874760 rs1610774 T C . PASS . . . . . . 36.46 69.18 129 1000.00 11.22 51.94 0 51.94 0/1
chr1 144874815 rs1778155 T C . PASS . . . . . . 36.15 69.07 126 1000.00 7.76 56.35 0 56.35 0/1
chr1 144874950 rs1747957 G A . PASS . . . . . . 37.0 69.25 24 730.70 10.00 83.33 0 83.33 0/1
chr1 144875979 rs71664005 G C . PASS . . . . . . 37.0 69.8 53 430.41 6.54 28.30 0 28.30 0/1
chr1 144877176 rs2762875 C T . PASS . . . . . . 36.43 64.0 133 1000.00 0.33 47.37 0 47.37 0/1
chr1 144878928 rs2762876 G T . PASS . . . . . . 37.0 70.0 13 91.33 0.00 30.77 0 30.77 0/1
chr1 144879090 rs1778120 T C . PASS . . . . . . 36.29 69.68 151 909.23 1.40 22.52 0 22.52 0/1
chr1 144879264 rs2798901 A G . PASS 0.5378000 0.7248000 0.9296000 0.6451000 0.7730000 0.7101000 36.75 69.93 142 1000.00 0.00 100.00 0 100.00 1/1
chr1 144879375 rs1747958 T C . PASS . . . . . . 37.0 69.84 73 1000.00 6.81 50.68 0 50.68 0/1
chr1 144879485 rs113467089 G C . PASS 0.0613000 0.0144000 0.0734000 0.0179000 0.0327000 0.0429000 37.0 69.97 132 777.40 2.61 21.97 0 21.97 0/1
chr1 144880832 rs12568796 T C . PASS . . . . . . 36.48 70.0 99 618.25 5.18 23.23 0 23.23 0/1
chr1 144881389 rs1614163 T C . PASS . . . . . . 36.23 70.0 52 1000.00 11.17 59.62 0 59.62 0/1
chr1 144882581 rs1699836 A G . PASS . . . . . . 36.08 69.37 104 1000.00 5.77 50.00 0 50.00 0/1
chr1 144882823 rs1698647 C T . PASS . . . . . . 36.69 70.0 195 1000.00 5.85 39.49 0 39.49 0/1
chr1 144886063 rs1625285 T C . PASS . . . . . . 36.4 70.0 61 607.33 1.31 32.79 0 32.79 0/1
chr1 144886092 rs1343472 C T . PASS . . . . . . 37.0 70.0 98 1000.00 8.00 37.76 0 37.76 0/1
chr1 144886197 rs1698624 A T . PASS . . . . . . 36.63 70.0 141 1000.00 5.08 46.10 0 46.10 0/1
chr1 144892089 rs1614098 G T . PASS . . . . . . 35.91 68.64 56 689.75 20.13 39.29 0 39.29 0/1
chr1 144892149 rs1698709 G A . PASS . . . . . . 37.0 68.78 103 994.15 13.05 31.07 0 31.07 0/1
chr1 144906508 rs34169189 C T . PASS 0.0227000 0.1974000 0.0268000 0.1342000 0.1411000 0.0933000 36.37 69.63 76 1000.00 0.00 100.00 0 100.00 1/1
chr1 144910082 rs638780 A G . PASS 0.9221000 0.8963000 0.9435000 0.7903000 0.8548000 0.8832000 36.0 70.0 12 453.75 0.00 100.00 0 100.00 1/1
chr1 144912153 rs1628172 A G . PASS 0.9236000 0.8934000 0.9395000 0.8022000 0.8497000 0.8838000 36.92 69.99 142 1000.00 0.00 100.00 0 100.00 1/1
chr1 144912233 rs1629011 C T . PASS . . . . . . 37.0 69.44 111 1000.00 2.91 35.14 0 35.14 0/1
chr1 144915412 rs1698684 T C . PASS . . . . . . 36.2 70.0 56 1000.00 4.52 53.57 0 53.57 0/1
chr1 144915561 rs1778111 G A . PASS . . . . . . 37.0 68.0 88 955.77 11.21 34.09 0 34.09 0/1
chr1 144915623 rs66512216 AG A . PASS . . . . . . 37.0 67.79 86 612.40 4.32 24.42 0 38.37 0/1
chr1 144916486 rs1699798 T G . PASS . . . . . . 35.8 70.0 19 311.88 9.47 52.63 0 52.63 0/1
chr1 144916493 rs1699799 A G . PASS . . . . . . 37.0 70.0 24 438.31 4.49 54.17 0 54.17 0/1
chr1 144916748 rs1747930 C G . PASS . . . . . . 34.71 70.0 52 636.01 2.56 40.38 0 40.38 0/1
chr1 144917199 rs1699800 C T . PASS 0.5008000 0.5014000 0.5010000 0.5030000 0.4990000 0.5010000 35.94 70.0 84 1000.00 13.03 40.48 0 40.48 0/1
chr1 144917546 rs1698682 A G . PASS . . . . . . 36.82 70.0 138 1000.00 1.00 47.10 0 47.10 0/1
chr1 144917841 rs1698681 T C . PASS . . . . . . 36.29 64.14 114 1000.00 2.79 44.74 0 44.74 0/1
chr1 144918726 rs112929970 T C . PASS 0.0620000 0.0144000 0.0734000 0.0179000 0.0368000 0.0439000 37.0 69.0 24 187.69 11.90 29.17 0 29.17 0/1
chr1 144918957 rs1061308 T A . PASS . . . . . . 36.6 68.87 110 1000.00 1.52 54.55 0 54.55 0/1
chr1 144921924 rs71664015 G A . PASS . . . . . . 36.38 70.0 158 1000.00 6.17 24.68 0 24.68 0/1
chr1 144922109 rs1343469 A G . PASS . . . . . . 36.7 70.0 62 1000.00 2.58 64.52 0 64.52 0/1
chr1 144922171 rs1343470 C T . PASS . . . . . . 36.38 70.0 176 1000.00 2.46 54.55 0 54.55 0/1
chr1 144922583 rs1359300 G A . PASS . . . . . . 36.71 69.52 104 1000.00 4.95 40.38 0 40.38 0/1
chr1 144923728 rs369106087 GT G . PASS 0.0113000 0.2205000 0.3988000 0.1799000 0.1810000 0.1853000 36.4 69.62 154 1000.00 5.86 33.12 0 33.77 0/1
chr1 144923823 rs11268079,rs142552837,rs377615175 TAGGAAGAAACGGCA T . PASS 0.9675000 0.8934000 0.9911000 0.8012000 0.8405000 0.9038000 36.39 70.0 62 1000.00 2.12 98.39 0 98.39 0/1
chr1 144923916 rs112658326 G A . PASS . . . . . . 34.6 70.0 16 116.21 12.50 31.25 0 31.25 0/1
chr1 144930571 rs2762866 C A . PASS . . . . . . 36.57 70.0 66 922.29 0.00 42.42 0 42.42 0/1
chr1 144930596 rs2762867 C A . PASS . . . . . . 36.65 70.0 77 1000.00 2.67 44.16 0 44.16 0/1
chr1 144930940 rs2147326 T C . PASS . . . . . . 36.14 69.29 58 938.50 18.47 48.28 0 48.28 0/1
chr1 144931330 rs2762745 C T . PASS . . . . . . 37.0 70.0 123 1000.00 2.64 43.09 0 43.09 0/1
chr1 144931392 rs2798893 G A . PASS . . . . . . 36.31 70.0 96 1000.00 8.57 36.46 0 36.46 0/1
chr1 144931461 rs41315685 A T . PASS . . . . . . 37.0 70.0 121 1000.00 9.83 29.75 0 29.75 0/1
chr1 144946510 rs2488977 C T . PASS 0.7360000 0.8660000 0.7440000 0.9602000 0.8609000 0.8251000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 144946768 rs2762733 G A . PASS . . . . . . 35.91 70.0 26 336.73 8.39 42.31 0 42.31 0/1
chr1 144952078 rs71220421 C A . PASS . . . . . . 37.0 61.88 14 255.40 0.00 57.14 0 57.14 0/1
chr1 144952207 rs3121544 C T . PASS . . . . . . 36.77 58.42 185 1000.00 2.96 28.65 0 28.65 0/1
chr1 144952220 rs139438772 C T . PASS . . . . . . 36.22 58.13 175 1000.00 0.42 44.00 0 44.00 0/1
chr1 144952255 rs148545794 G C . PASS . . . . . . 37.0 51.6 145 153.50 30.34 10.34 0 10.34 0/1
chr1 144994658 rs1664022 C A . PASS . . . . . . 36.52 69.91 466 1000.00 0.84 47.85 0 48.28 0/1
chr1 144994861 rs2442640 C T . PASS . . . . . . 36.45 70.0 38 760.09 15.79 57.89 0 57.89 0/1
chr1 145016020 rs657162 T G . PASS 0.8079000 0.9870000 0.9593000 0.9990000 0.9796000 0.9351000 35.85 70.0 157 1000.00 0.00 100.00 0 100.00 1/1
chr1 145016032 rs5777511,rs112952246 C CA . PASS . . . . . . 35.96 70.0 141 1000.00 1.87 46.81 0 48.94 0/1
chr1 145020936 rs1778693 A G . PASS . . . . . . 37.0 70.0 10 104.51 0.00 40.00 0 40.00 0/1
chr1 145021024 rs1778692 G C . PASS . . . . . . 37.0 70.0 54 51.47 14.81 11.11 0 11.11 0/1
chr1 145021034 rs674066 C A . PASS 0.2708000 0.3300000 0.1250000 0.3588000 0.2822000 0.2696000 37.0 70.0 68 51.09 30.25 10.29 0 10.29 0/1
chr1 145021089 rs1613515 G A . PASS . . . . . . 36.48 70.0 146 476.87 16.74 15.75 0 15.75 0/1
chr1 145021150 rs11538401 T C . PASS . . . . . . 36.6 70.0 169 699.96 18.66 17.75 0 17.75 0/1
chr1 145021183 rs56185836 C A . PASS . . . . . . 37.0 70.0 116 491.40 12.48 18.10 0 18.10 0/1
chr1 145021265 rs673110 A G . PASS 0.3026000 0.3401000 0.1270000 0.3608000 0.2894000 0.2815000 37.0 70.0 22 68.39 22.73 18.18 0 18.18 0/1
chr1 145024590 . T TAC . PASS . . . . . . 36.68 70.0 26 693.08 33.33 23.08 0 76.92 0/1
chr1 145024590 . T TACAC . PASS . . . . . . 36.75 70.0 26 693.08 0.00 53.85 0 76.92 0/1
chr1 145039562 rs1663878 C T . PASS . . . . . . 36.51 70.0 218 1000.00 0.10 56.42 0 56.42 0/1
chr1 145075519 rs2596337 G C . PASS . . . . . . 37.0 70.0 28 171.49 0.00 25.00 0 25.00 0/1
chr1 145075683 rs2762779 C T . PASS . . . . . . 36.68 70.0 311 1000.00 6.93 24.44 0 24.44 0/1
chr1 145075854 rs1663853 G C . PASS . . . . . . 36.75 70.0 359 1000.00 1.61 39.83 0 39.83 0/1
chr1 145075923 rs6656135 C T . PASS 0.3797000 0.4467000 0.3899000 0.4483000 0.4172000 0.4121000 36.13 70.0 120 1000.00 8.48 45.83 0 45.83 0/1
chr1 145103844 rs2590144 G A . PASS . . . . . . 37.0 70.0 36 569.27 3.59 47.22 0 47.22 0/1
chr1 145103947 rs2794062 T C . PASS . . . . . . 36.55 70.0 174 1000.00 0.00 45.98 0 45.98 0/1
chr1 145109456 rs7553975 C T . PASS . . . . . . 37.0 70.0 49 112.44 24.49 14.29 0 14.29 0/1
chr1 145109468 rs2442652 A G . PASS 0.8888000 0.9712000 0.9871000 0.9533000 0.9601000 0.9469000 36.59 70.0 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 145109549 rs2596331 G T . PASS . . . . . . 36.18 70.0 174 1000.00 1.04 25.29 0 25.29 0/1
chr1 145109583 rs2794053 C A . PASS . . . . . . 36.46 70.0 243 1000.00 0.13 46.09 0 46.09 0/1
chr1 145109661 rs2655551 G A . PASS . . . . . . 36.56 70.0 263 1000.00 2.10 20.53 0 20.53 0/1
chr1 145109809 rs2596327 T A . PASS . . . . . . 37.0 70.0 23 61.26 0.00 17.39 0 17.39 0/1
chr1 145112287 rs2794042 T C . PASS 0.5053000 0.5029000 0.5020000 0.5070000 0.5102000 0.5056000 37.0 70.0 12 223.80 0.00 58.33 0 58.33 0/1
chr1 145112313 rs2596302 T C . PASS . . . . . . 37.0 70.0 26 348.75 5.59 42.31 0 42.31 0/1
chr1 145112414 rs2590131 T C . PASS . . . . . . 36.63 69.69 205 1000.00 3.53 31.71 0 31.71 0/1
chr1 145112420 rs2794041 C T . PASS . . . . . . 36.68 70.0 215 895.68 9.16 17.67 0 17.67 0/1
chr1 145112428 rs2794040 C T . PASS . . . . . . 36.68 69.73 232 1000.00 5.40 32.33 0 32.33 0/1
chr1 145112468 rs200742331 A C . PASS . . . . . . 36.37 70.0 286 665.85 2.10 13.29 0 13.29 0/1
chr1 145112485 rs2794039 C T . PASS . . . . . . 36.48 69.71 269 1000.00 6.13 25.65 0 25.65 0/1
chr1 145115602 rs7540746 C T . PASS . . . . . . 37.0 70.0 13 53.71 0.00 23.08 0 23.08 0/1
chr1 145115810 rs2655557 A G . PASS . . . . . . 36.48 69.91 369 1000.00 0.65 62.06 0 62.06 0/1
chr1 145115815 rs202212505 A C . PASS . . . . . . 36.73 70.0 360 747.46 1.67 12.50 0 12.50 0/1
chr1 145115820 rs2655558 T C . PASS . . . . . . 36.47 70.0 365 1000.00 3.14 24.66 0 24.66 0/1
chr1 145116027 rs7550440 T C . PASS . . . . . . 37.0 70.0 12 98.49 0.00 33.33 0 33.33 0/1
chr1 145139088 rs150935736 C CG . PASS . . . . . . 36.04 68.82 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 145139601 rs3831335 T TCCGGCCGCCGCCGTGGGGGC . PASS . . . . . . 36.7 66.04 28 1000.00 0.00 92.86 0 96.43 1/1
chr1 145209350 . A C . PASS . . . . . . 37.0 51.64 64 230.23 3.98 17.19 0 17.19 0/1
chr1 145209366 rs856450 A G . PASS . . . . . . 36.67 49.06 91 1000.00 15.81 39.56 0 39.56 0/1
chr1 145209612 . GCCCCGCCAACCGCCGGGGTT G . PASS 0.4100000 0.3674000 0.4256000 0.4225000 0.4724000 0.4219000 37.0 69.0 10 175.48 0.00 60.00 0 60.00 0/1
chr1 145214099 rs141567600 G A . PASS 0.7769000 0.6945000 0.5933000 0.6133000 0.5961000 0.6603000 36.03 52.65 142 1000.00 0.41 78.17 0 78.17 0/1
chr1 145214122 rs201409377 T C . PASS . . . . . . 36.08 51.31 108 173.49 43.30 12.04 0 12.04 0/1
chr1 145214205 rs139054716 TCTC T . PASS . . . . . . 34.73 56.73 28 314.16 4.55 39.29 1 39.29 0/1
chr1 145214207 . TC T . PASS . . . . . . 34.73 56.73 24 320.18 12.88 45.83 1 45.83 0/1
chr1 145248811 rs199902817 A G . PASS . . . . . . 37.0 55.0 51 357.05 27.75 25.49 0 25.49 0/1
chr1 145248851 rs201970415 G A . PASS . . . . . . 37.0 51.33 46 79.69 39.13 13.04 0 13.04 0/1
chr1 145250268 rs146483373 A G . PASS . . . . . . 35.74 62.74 27 655.88 2.34 70.37 0 70.37 0/1
chr1 145250312 rs200325064 G A . PASS . . . . . . 37.0 60.73 116 244.94 3.68 12.93 0 12.93 0/1
chr1 145250349 rs142553870 A AC . PASS 0.4705000 0.5648000 0.5288000 0.5636000 0.5102000 0.5218000 36.45 59.21 175 1000.00 2.65 53.14 0 73.71 0/1
chr1 145250466 rs140508814 G C . PASS . . . . . . 37.0 44.55 23 353.62 26.09 47.83 0 47.83 0/1
chr1 145250471 rs148919613 T A . PASS . . . . . . 36.0 64.08 21 389.41 14.29 57.14 0 57.14 0/1
chr1 145273302 rs201646101 A G . PASS . . . . . . 36.7 66.08 459 1000.00 8.09 26.14 0 26.14 0/1
chr1 145273345 rs75987820 T C . PASS . . . . . . 36.46 67.78 602 1000.00 8.89 29.73 0 29.73 0/1
chr1 145273473 rs202082259 T C . PASS . . . . . . 36.88 65.25 376 1000.00 5.08 27.13 0 27.13 0/1
chr1 145273520 rs2793994 G A . PASS . . . . . . 36.6 65.4 134 805.29 5.67 22.39 0 22.39 0/1
chr1 145281247 rs74721027 T A . PASS . . . . . . 37.0 58.33 17 162.83 0.00 35.29 0 35.29 0/1
chr1 145281408 rs201164506 C T . PASS . . . . . . 36.6 64.96 486 1000.00 1.83 24.49 0 24.49 0/1
chr1 145281543 rs8002 C T . PASS . . . . . . 36.52 67.11 424 1000.00 3.38 23.58 0 23.58 0/1
chr1 145281613 rs12120756 C A . PASS . . . . . . 35.96 67.24 518 1000.00 2.89 17.76 0 17.76 0/1
chr1 145281633 rs28576333 C A . PASS . . . . . . 36.61 67.05 554 1000.00 6.13 16.61 0 16.61 0/1
chr1 145282093 rs199946317 G A . PASS . . . . . . 36.4 65.35 68 586.25 12.35 29.41 0 29.41 0/1
chr1 145293425 rs7366490 C A . PASS . . . . . . 35.67 66.67 299 1000.00 8.11 21.07 0 21.07 0/1
chr1 145293490 rs6671335 G C . PASS . . . . . . 36.45 68.12 374 1000.00 0.00 17.65 0 17.65 0/1
chr1 145293498 rs4409714 G C . PASS . . . . . . 36.67 68.48 358 1000.00 3.31 30.45 0 30.45 0/1
chr1 145293510 rs4356110 C G . PASS . . . . . . 36.37 67.23 351 1000.00 1.56 16.24 0 16.24 0/1
chr1 145293515 rs12565078 A G . PASS . . . . . . 36.08 69.33 341 534.19 12.38 11.44 0 11.44 0/1
chr1 145293566 rs7526045 G A . PASS . . . . . . 36.45 65.86 247 1000.00 9.86 17.81 0 17.81 0/1
chr1 145293667 rs6689039 T G . PASS . . . . . . 37.0 65.57 45 120.33 15.24 15.56 0 15.56 0/1
chr1 145293692 rs7526143 G A . PASS . . . . . . 35.67 64.22 39 214.08 5.13 23.08 0 23.08 0/1
chr1 145293744 . G A . PASS . . . . . . 37.0 61.25 22 68.39 9.09 18.18 0 18.18 0/1
chr1 145295539 rs3872115 A G . PASS 0.0144000 0.0764000 0.2292000 0.1074000 0.1043000 0.1024000 37.0 45.56 49 571.93 3.17 36.73 0 36.73 0/1
chr1 145295541 rs145797639 A G . PASS 0.0023000 0.0259000 0.0377000 0.0249000 0.0532000 0.0272000 35.5 45.0 49 64.68 14.29 12.24 0 16.33 0/1
chr1 145296268 rs4996271 C T . PASS 0.0673000 0.4323000 0.4107000 0.4702000 0.3998000 0.3329000 37.0 67.78 11 310.35 12.12 81.82 0 81.82 0/1
chr1 145296372 rs4068113 A G . PASS . . . . . . 36.49 51.74 68 1000.00 4.07 69.12 0 69.12 0/1
chr1 145296478 rs6663523 G T . PASS . . . . . . 36.67 48.42 77 1000.00 17.24 46.75 0 46.75 0/1
chr1 145296486 . G A . PASS . . . . . . 35.67 50.0 68 126.78 91.18 13.24 0 13.24 0/1
chr1 145296668 . T A . PASS . . . . . . 35.8 61.7 31 275.78 0.00 32.26 0 32.26 0/1
chr1 145296675 rs199792864 A G . PASS . . . . . . 37.0 56.88 33 536.54 0.00 48.48 0 48.48 0/1
chr1 145296682 rs4068118 C A . PASS . . . . . . 37.0 56.0 32 493.63 0.00 46.88 0 46.88 0/1
chr1 145296698 . T C . PASS . . . . . . 37.0 56.0 31 83.07 0.00 16.13 0 16.13 0/1
chr1 145296701 rs199739656 T C . PASS . . . . . . 37.0 55.22 26 265.20 0.00 34.62 0 34.62 0/1
chr1 145297615 rs4068081 C A . PASS . . . . . . 36.25 61.06 120 258.52 25.00 13.33 0 13.33 0/1
chr1 145297731 rs4068084 G A . PASS . . . . . . 37.0 61.32 149 563.30 38.01 16.78 0 16.78 0/1
chr1 145297735 . G A . PASS . . . . . . 37.0 60.73 143 163.66 24.90 10.49 0 10.49 0/1
chr1 145297752 . A T . PASS . . . . . . 36.08 62.69 123 124.17 9.38 10.57 0 10.57 0/1
chr1 145297783 . T A . PASS . . . . . . 35.8 63.65 95 488.85 14.21 21.05 0 21.05 0/1
chr1 145297788 rs55732260 G A . PASS . . . . . . 37.0 67.22 94 645.31 0.93 24.47 0 24.47 0/1
chr1 145297794 . C G . PASS . . . . . . 36.4 61.85 86 527.94 24.88 23.26 0 23.26 0/1
chr1 145297817 rs4068088 G C . PASS . . . . . . 37.0 64.54 63 1000.00 2.50 82.54 0 82.54 0/1
chr1 145297890 rs4068089 G A . PASS . . . . . . 37.0 62.47 23 691.94 8.70 82.61 0 82.61 0/1
chr1 145298070 rs12068486 G A . PASS . . . . . . 37.0 56.33 16 170.00 12.50 37.50 0 37.50 0/1
chr1 145298089 rs28605822 G T . PASS . . . . . . 37.0 55.67 24 141.77 8.33 25.00 0 25.00 0/1
chr1 145298095 rs12127411 C A . PASS . . . . . . 37.0 54.8 27 90.97 32.59 18.52 0 18.52 0/1
chr1 145298186 rs28507779 C G . PASS . . . . . . 36.43 45.29 125 452.31 6.93 16.80 0 16.80 0/1
chr1 145298351 . C G . PASS . . . . . . 37.0 23.0 40 51.84 85.00 12.50 0 12.50 0/1
chr1 145299636 rs200598598 A G . PASS . . . . . . 37.0 37.5 24 229.45 0.00 33.33 0 33.33 0/1
chr1 145299758 . C T . PASS 0.0068000 0.0591000 0.0020000 0.0527000 0.0920000 0.0389000 36.4 38.05 168 285.26 39.76 11.90 0 11.90 0/1
chr1 145299792 rs61814628 A G . PASS . . . . . . 37.0 61.12 258 277.00 3.88 10.08 0 10.08 0/1
chr1 145299805 rs61814629 A C . PASS 0.0015000 0.0231000 0.0635000 0.0487000 0.0491000 0.0357000 36.14 60.82 270 296.27 0.74 10.37 0 10.37 0/1
chr1 145299809 rs61814630 G A . PASS 0.0015000 0.0231000 0.0635000 0.0487000 0.0491000 0.0357000 36.57 60.82 270 312.41 8.62 10.37 0 10.37 0/1
chr1 145299824 rs9424711 C G . PASS . . . . . . 36.69 47.64 286 719.61 11.66 13.64 0 13.64 0/1
chr1 145299906 rs199863138 T G . PASS . . . . . . 36.77 61.48 176 1000.00 3.23 29.55 0 29.55 0/1
chr1 145301604 . C T . PASS . . . . . . 34.0 57.5 11 89.49 0.00 36.36 0 36.36 0/1
chr1 145301651 rs202030598 T C . PASS . . . . . . 37.0 60.69 34 408.20 5.88 38.24 0 38.24 0/1
chr1 145301697 rs75611366 C T . PASS . . . . . . 36.45 65.16 108 1000.00 10.44 40.74 0 40.74 0/1
chr1 145301793 rs75332562 A G . PASS . . . . . . 36.61 60.87 124 877.19 11.29 25.00 0 25.00 0/1
chr1 145301802 rs6690575 C G . PASS . . . . . . 37.0 58.71 112 795.85 14.29 25.00 0 25.00 0/1
chr1 145301831 rs201470840 A G . PASS . . . . . . 36.54 64.15 64 848.92 5.77 40.62 0 40.62 0/1
chr1 145301853 rs61814641 C G . PASS 0.8714000 0.9265000 0.8145000 0.8857000 0.8712000 0.8704000 36.6 62.4 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 145301887 rs6683593 G A . PASS . . . . . . 34.6 54.4 12 128.26 10.00 41.67 0 41.67 0/1
chr1 145301907 rs6697832 A C . PASS 0.4932000 0.4841000 0.4692000 0.4583000 0.4918000 0.4798000 37.0 61.33 13 97.35 19.23 30.77 0 46.15 0/1
chr1 145302745 rs376449217 A T . PASS . . . . . . 37.0 40.33 11 55.58 36.36 27.27 0 27.27 0/1
chr1 145303971 rs146037073 A G . PASS 0.7156000 0.5994000 0.3800000 0.4821000 0.4233000 0.5280000 36.08 48.85 108 704.47 5.84 24.07 0 24.07 0/1
chr1 145310197 rs7554921 C T . PASS . . . . . . 35.5 36.88 16 241.53 0.00 50.00 0 50.00 0/1
chr1 145310932 rs142756325 C A . PASS . . . . . . 35.67 53.44 11 294.19 0.00 81.82 0 81.82 0/1
chr1 145310983 rs116247129 G C . PASS . . . . . . 37.0 56.18 13 383.72 0.00 84.62 0 84.62 0/1
chr1 145311083 rs201091947 A C . PASS . . . . . . 36.14 40.79 154 1000.00 0.97 36.36 0 36.36 0/1
chr1 145311110 rs141899955 G C . PASS . . . . . . 35.88 38.22 194 680.09 21.71 16.49 0 16.49 0/1
chr1 145367863 rs78014802 A T . PASS . . . . . . 34.6 65.6 15 115.07 0.00 33.33 0 33.33 0/1
chr1 145368461 rs12128680 A C . PASS . . . . . . 37.0 69.43 39 138.39 23.44 17.95 0 17.95 0/1
chr1 145368473 . G C . PASS . . . . . . 36.2 57.4 53 418.40 19.12 28.30 0 28.30 0/1
chr1 145368518 rs61813437 C T . PASS . . . . . . 36.7 59.28 154 1000.00 6.56 25.97 0 25.97 0/1
chr1 145368837 rs7414890 C A . PASS . . . . . . 37.0 68.67 19 282.12 0.00 47.37 0 47.37 0/1
chr1 145474626 . A C . PASS . . . . . . 28.43 70.0 31 102.42 154.84 22.58 0 22.58 0/1
chr1 145531980 rs4384171 T C . PASS 0.9554000 0.9986000 1.0000000 1.0000000 1.0000000 0.9880000 34.82 70.0 11 399.97 0.00 100.00 0 100.00 1/1
chr1 145532010 . CT C . PASS . . . . . . 32.5 70.0 13 67.91 11.54 30.77 1 30.77 0/1
chr1 145532010 . CTGTG CTGTGAG . PASS . . . . . . . . 16 58.88 87.50 6.25 1 31.25 0/1
chr1 145532010 . CTGTG C . PASS . . . . . . 32.5 70.0 16 58.88 37.50 25.00 1 31.25 0/1
chr1 145532011 . TG T . PASS . . . . . . 32.5 70.0 16 58.88 37.50 25.00 1 25.00 0/1
chr1 145532012 . GT G . PASS . . . . . . 32.5 70.0 16 58.88 37.50 25.00 1 25.00 0/1
chr1 145532013 . TG T . PASS . . . . . . 32.5 70.0 16 58.88 37.50 25.00 1 25.00 0/1
chr1 145532549 rs1328584 T C . PASS 0.9554000 0.9986000 1.0000000 1.0000000 1.0000000 0.9880000 36.52 70.0 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 145555653 rs6424379 C T . PASS 0.3903000 0.4553000 0.3085000 0.5775000 0.3190000 0.4065000 35.82 70.0 142 1000.00 0.00 100.00 0 100.00 1/1
chr1 145558565 rs11801520 C G . PASS 0.8094000 0.9798000 1.0000000 1.0000000 1.0000000 0.9469000 36.38 69.66 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 145561116 rs11578772 G A . PASS 0.0023000 0.0692000 0.0000000 0.1133000 0.0184000 0.0365000 36.43 70.0 58 658.12 7.39 36.21 0 36.21 0/1
chr1 145562087 rs41315701 G A . PASS 0.0129000 0.1110000 0.1319000 0.2117000 0.1830000 0.1236000 35.15 70.0 33 387.20 22.84 39.39 0 39.39 0/1
chr1 145562293 rs11579366 G C . PASS 0.0900000 0.4755000 0.2738000 0.6143000 0.3630000 0.3391000 36.48 70.0 92 1000.00 0.00 100.00 0 100.00 1/1
chr1 145585317 rs4128488 A G . PASS 0.7065000 0.9813000 1.0000000 1.0000000 1.0000000 0.9199000 36.43 70.0 21 829.68 0.00 100.00 0 100.00 1/1
chr1 145588536 rs9286836 C T . PASS 0.6059000 0.6441000 0.8353000 0.6362000 0.7863000 0.6987000 37.0 70.0 64 819.16 0.87 39.06 0 39.06 0/1
chr1 145589491 rs1887804 A T . PASS 0.8169000 0.9827000 1.0000000 1.0000000 1.0000000 0.9493000 34.71 70.0 21 789.49 0.00 100.00 0 100.00 1/1
chr1 145597116 rs9728311 C T . PASS 0.8548000 0.9885000 1.0000000 0.9990000 0.9990000 0.9597000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 145597417 rs9728345 C A . PASS 0.0635000 0.3343000 0.1548000 0.3579000 0.1789000 0.2011000 37.0 70.0 14 213.64 14.29 50.00 0 50.00 0/1
chr1 145598459 rs9729715 T C . PASS 0.8548000 0.9885000 1.0000000 1.0000000 1.0000000 0.9601000 37.0 70.0 25 1000.00 0.00 100.00 0 100.00 1/1
chr1 145601861 rs9286837 G A . PASS 0.8880000 0.9885000 1.0000000 1.0000000 1.0000000 0.9689000 37.0 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 146013577 rs145151412 A C . PASS . . . . . . 36.02 64.82 89 1000.00 6.24 55.06 0 55.06 0/1
chr1 146021102 rs55712445 C T . PASS . . . . . . 37.0 51.14 12 223.80 4.76 58.33 0 58.33 0/1
chr1 146055315 . T C . PASS . . . . . . 37.0 55.2 10 382.23 0.00 100.00 0 100.00 1/1
chr1 146055320 . G GC . PASS . . . . . . 37.0 48.4 17 67.86 11.76 23.53 1 23.53 0/1
chr1 146055320 . GT GCC . PASS . . . . . . . . 19 67.86 21.05 21.05 1 100.00 0/1
chr1 146055321 . T C . PASS . . . . . . 37.0 51.82 17 632.84 0.74 94.12 1 100.00 1/1
chr1 146055329 . T C . PASS . . . . . . 37.0 47.54 31 960.25 1.49 83.87 0 83.87 0/1
chr1 146055527 . G T . PASS . . . . . . 34.0 48.0 21 55.24 0.00 19.05 0 19.05 0/1
chr1 146057328 rs201313444 C T . PASS . . . . . . 37.0 53.43 42 133.50 14.29 16.67 0 16.67 0/1
chr1 146215022 . T C . PASS . . . . . . 37.0 37.11 10 313.51 0.00 90.00 0 90.00 0/1
chr1 146215111 rs373124782 G A . PASS . . . . . . 36.52 54.57 80 1000.00 3.33 93.75 0 93.75 1/1
chr1 146215113 rs377681920 G A . PASS . . . . . . 36.38 54.64 82 1000.00 3.42 93.90 0 93.90 1/1
chr1 146215138 rs370516541 A G . PASS . . . . . . 36.28 55.17 87 1000.00 3.73 94.25 0 95.40 1/1
chr1 146215223 . G C . PASS . . . . . . 37.0 58.23 32 953.09 10.10 81.25 0 81.25 0/1
chr1 146215232 . A C . PASS . . . . . . 37.0 58.62 17 587.82 2.94 94.12 0 94.12 1/1
chr1 146250779 . G A . PASS . . . . . . 37.0 59.75 16 86.45 12.50 25.00 0 25.00 0/1
chr1 146250806 . C G . PASS . . . . . . 37.0 59.44 30 249.01 37.78 30.00 0 30.00 0/1
chr1 146250855 . C T . PASS . . . . . . 37.0 49.29 58 670.14 18.56 36.21 0 36.21 0/1
chr1 146250905 . G C . PASS 0.0855000 0.0245000 0.0208000 0.0457000 0.0256000 0.0443000 35.29 44.07 68 319.48 5.88 20.59 0 20.59 0/1
chr1 146250971 . G A . PASS . . . . . . 37.0 28.25 28 50.33 42.86 14.29 0 14.29 0/1
chr1 146317771 rs376457100 C A . PASS . . . . . . 36.68 57.82 44 1000.00 0.00 81.82 0 86.36 0/1
chr1 146334172 rs377555855 G A . PASS . . . . . . 36.44 66.51 86 1000.00 4.65 50.00 0 50.00 0/1
chr1 146378783 rs371746531 C T . PASS . . . . . . 37.0 52.18 22 360.79 9.09 50.00 0 50.00 0/1
chr1 146395247 . T G . PASS . . . . . . 37.0 48.0 11 55.58 78.79 27.27 0 27.27 0/1
chr1 146395313 . A G . PASS . . . . . . 36.33 48.22 34 605.05 24.84 52.94 0 52.94 0/1
chr1 146395315 . T C . PASS . . . . . . 37.0 50.15 35 405.20 10.11 37.14 0 37.14 0/1
chr1 146395336 . G A . PASS . . . . . . 33.4 44.1 41 225.81 13.66 24.39 0 24.39 0/1
chr1 146395423 rs369976705 T C . PASS . . . . . . 36.14 42.29 63 350.68 31.75 22.22 0 22.22 0/1
chr1 146395447 . A G . PASS 0.2874000 0.2089000 0.1419000 0.1590000 0.3436000 0.2324000 35.8 44.85 92 1000.00 2.83 43.48 0 43.48 0/1
chr1 146395465 . T A . PASS . . . . . . 36.68 47.65 100 1000.00 15.73 37.00 0 37.00 0/1
chr1 146395537 . A G . PASS . . . . . . 36.0 44.58 80 705.20 31.67 30.00 0 30.00 0/1
chr1 146398203 rs376385375 A G . PASS 0.4985000 0.4957000 0.4921000 0.4970000 0.5000000 0.4968000 37.0 44.5 23 399.54 0.00 52.17 0 52.17 0/1
chr1 146398208 rs371150699 A G . PASS . . . . . . 36.14 43.79 28 456.03 7.14 50.00 0 50.00 0/1
chr1 146398387 . G C . PASS . . . . . . 36.14 38.5 49 388.67 48.98 28.57 0 28.57 0/1
chr1 146398399 rs377655940 G A . PASS 0.0582000 0.1297000 0.1925000 0.0795000 0.0327000 0.0944000 37.0 45.62 45 500.41 28.89 35.56 0 35.56 0/1
chr1 146398422 rs371127857 G A . PASS 0.0053000 0.0014000 0.0000000 0.0000000 0.0112000 0.0037939 37.0 49.88 49 154.21 85.71 16.33 0 16.33 0/1
chr1 146398425 . C A . PASS 0.0045000 0.0014000 0.0000000 0.0000000 0.0082000 0.0029952 37.0 53.29 49 108.28 81.63 14.29 0 14.29 0/1
chr1 146399525 . C A . PASS . . . . . . 36.08 52.69 37 383.02 44.07 35.14 0 35.14 0/1
chr1 146399562 . T C . PASS . . . . . . 37.0 55.81 93 815.41 45.40 29.03 0 29.03 0/1
chr1 146399674 . A G . PASS . . . . . . 37.0 56.32 97 469.21 44.28 19.59 0 19.59 0/1
chr1 146399683 rs372007274 A G . PASS 0.3578000 0.3934000 0.3095000 0.2296000 0.1380000 0.2843000 36.75 55.35 76 1000.00 2.19 63.16 0 63.16 0/1
chr1 146399724 . G A . PASS . . . . . . 36.29 57.35 53 506.10 9.77 32.08 0 32.08 0/1
chr1 146399728 . T C . PASS 0.2224000 0.2968000 0.1558000 0.1849000 0.2474000 0.2167000 36.5 57.92 49 810.52 3.23 48.98 0 48.98 0/1
chr1 146399730 . C G . PASS . . . . . . 37.0 58.33 45 78.56 51.11 13.33 0 13.33 0/1
chr1 146399778 . A G . PASS . . . . . . 36.14 57.64 27 459.04 0.00 51.85 0 51.85 0/1
chr1 146399787 . A G . PASS . . . . . . 37.0 57.64 27 471.05 0.00 51.85 0 51.85 0/1
chr1 146404683 . G C . PASS . . . . . . 36.33 46.22 19 658.69 5.26 94.74 0 94.74 1/1
chr1 146404718 . G A . PASS . . . . . . 37.0 49.5 12 349.11 33.33 83.33 0 83.33 0/1
chr1 146409969 . A C . PASS 0.1369000 0.1974000 0.0000000 0.3539000 0.0900000 0.1522000 35.8 54.2 10 366.07 0.00 100.00 0 100.00 1/1
chr1 146414187 . G A . PASS . . . . . . 37.0 26.4 15 340.08 6.67 66.67 0 66.67 0/1
chr1 146466030 rs201303733 C G . PASS 0.0946000 0.1484000 0.0962000 0.0427000 0.0194000 0.0773000 37.0 43.71 58 81.21 47.29 12.07 0 12.07 0/1
chr1 146466129 rs202035412 T G . PASS 0.1452000 0.2248000 0.2460000 0.1252000 0.0644000 0.1567000 37.0 38.11 75 489.49 15.11 24.00 0 24.00 0/1
chr1 146466146 . G T . PASS 0.1407000 0.1816000 0.0000000 0.3429000 0.0849000 0.1478000 35.36 63.5 71 1000.00 10.05 61.97 0 61.97 0/1
chr1 146466176 . C G . PASS . . . . . . 37.0 49.56 40 218.92 46.11 22.50 0 22.50 0/1
chr1 146491095 rs11240073 A G . PASS 0.7209000 0.8343000 0.9663000 0.8280000 0.6442000 0.7925000 37.0 58.91 11 424.00 0.00 100.00 0 100.00 1/1
chr1 146491156 rs74481866 A C . PASS 0.1407000 0.1110000 0.0417000 0.2416000 0.0583000 0.1208000 37.0 42.0 25 96.98 24.00 20.00 0 20.00 0/1
chr1 146491920 . C A . PASS . . . . . . 37.0 68.15 37 395.02 7.48 35.14 0 35.14 0/1
chr1 146491925 . A G . PASS . . . . . . 37.0 68.15 37 399.18 2.08 35.14 0 35.14 0/1
chr1 146491928 . A T . PASS . . . . . . 35.15 68.15 44 349.94 6.64 29.55 0 29.55 0/1
chr1 146491943 rs202087241 C T . PASS . . . . . . 36.14 68.21 51 386.80 13.45 27.45 0 27.45 0/1
chr1 146491946 rs200592894 T A . PASS . . . . . . 36.25 68.31 55 454.15 5.00 29.09 0 29.09 0/1
chr1 146491965 rs112324403 G C . PASS . . . . . . 35.59 68.35 61 465.85 2.89 27.87 0 27.87 0/1
chr1 146492064 . C T . PASS . . . . . . 37.0 66.6 38 62.00 28.42 13.16 0 13.16 0/1
chr1 146492069 . C G . PASS . . . . . . 37.0 66.6 32 75.92 28.75 15.62 0 15.62 0/1
chr1 146494509 rs34958799 GTG GCA . PASS . . . . . . 36.82 58.44 61 1000.00 11.38 55.74 0 57.38 0/1
chr1 146495752 rs6663770 C T . PASS 0.3548000 0.1427000 0.0476000 0.2863000 0.0757000 0.1953000 36.14 65.43 42 413.89 19.05 33.33 0 33.33 0/1
chr1 146502615 rs4950332 T G . PASS 0.4130000 0.2709000 0.1667000 0.4404000 0.2515000 0.3177000 37.0 70.0 15 85.31 6.67 26.67 0 26.67 0/1
chr1 146514576 rs34026136 T C . PASS 0.0628000 0.1412000 0.0268000 0.2763000 0.0798000 0.1126000 37.0 68.41 55 929.79 5.52 49.09 0 49.09 0/1
chr1 146523303 rs12723253 C T . PASS 0.1218000 0.1369000 0.0268000 0.2604000 0.0808000 0.1246000 37.0 70.0 47 1000.00 3.96 61.70 0 61.70 0/1
chr1 146523897 rs12124149 G T . PASS 0.0832000 0.1354000 0.0268000 0.2604000 0.0828000 0.1146000 36.16 69.98 85 1000.00 3.12 50.59 0 50.59 0/1
chr1 146549865 rs12753485 G C . PASS 0.5590000 0.4971000 0.4891000 0.4592000 0.5266000 0.5100000 36.86 70.0 156 1000.00 0.81 55.13 0 55.13 0/1
chr1 146554147 rs12129691 C T . PASS 0.1180000 0.1354000 0.0268000 0.2694000 0.0808000 0.1252000 35.8 63.8 16 325.06 17.50 62.50 0 62.50 0/1
chr1 146573352 rs367704260 TG T . PASS 0.1815000 0.0447000 0.0010000 0.0417000 0.1145000 0.0851000 37.0 70.0 21 187.15 28.57 33.33 0 33.33 0/1
chr1 146633933 rs1036852 G A . PASS 0.9047000 0.5879000 0.8532000 0.4433000 0.6830000 0.7145000 37.0 70.0 36 443.96 9.52 38.89 0 38.89 0/1
chr1 146639588 rs55797044 A G . PASS 0.1097000 0.0389000 0.0010000 0.0427000 0.1104000 0.0647000 37.0 70.0 11 226.81 2.60 63.64 0 63.64 0/1
chr1 146643495 rs72708505 C A . PASS 0.0620000 0.0331000 0.0010000 0.0427000 0.1104000 0.0513000 36.0 70.0 54 779.31 0.93 44.44 0 44.44 0/1
chr1 146643555 rs1348316 A G . PASS 0.7489000 0.5793000 0.8542000 0.4384000 0.6738000 0.6695000 36.65 70.0 87 1000.00 7.57 39.08 0 39.08 0/1
chr1 146643580 rs34838459 G A . PASS 0.0620000 0.0331000 0.0010000 0.0427000 0.1104000 0.0513000 36.29 70.0 89 1000.00 1.65 38.20 0 38.20 0/1
chr1 146649777 rs112196423 G A . PASS 0.0620000 0.0331000 0.0010000 0.0417000 0.0982000 0.0487000 36.65 69.94 71 1000.00 9.86 47.89 0 47.89 0/1
chr1 146650007 rs72708526 G A . PASS 0.0620000 0.0331000 0.0060000 0.0427000 0.1104000 0.0523000 36.52 69.88 43 870.35 1.67 58.14 0 58.14 0/1
chr1 146650312 rs72708527 G A . PASS 0.0620000 0.0331000 0.0010000 0.0427000 0.1104000 0.0513000 36.0 70.0 44 813.56 9.09 54.55 0 54.55 0/1
chr1 146650363 rs17159909 T A . PASS 0.0620000 0.0331000 0.0060000 0.0427000 0.1104000 0.0523000 37.0 70.0 41 758.92 3.10 53.66 0 53.66 0/1
chr1 146650542 rs62623395 A G . PASS 0.0620000 0.0331000 0.0010000 0.0427000 0.1104000 0.0513000 36.61 69.55 55 1000.00 14.31 56.36 0 56.36 0/1
chr1 146650723 rs62623392 G A . PASS 0.0620000 0.0331000 0.0010000 0.0427000 0.1104000 0.0513000 36.4 70.0 40 670.53 5.00 50.00 0 50.00 0/1
chr1 146656097 rs72708554 C T . PASS 0.0620000 0.0331000 0.0069000 0.0427000 0.1104000 0.0525000 36.25 70.0 27 542.58 3.70 59.26 0 59.26 0/1
chr1 146672906 rs894469 C T . PASS 0.8253000 0.9467000 0.9871000 0.9085000 0.8476000 0.8958000 35.97 70.0 69 1000.00 12.75 50.72 0 50.72 0/1
chr1 146674937 rs56400874 C T . PASS 0.0620000 0.0331000 0.0010000 0.0427000 0.1104000 0.0513000 37.0 70.0 42 927.14 15.38 61.90 0 61.90 0/1
chr1 146675019 rs56047816 C T . PASS 0.0620000 0.0331000 0.0010000 0.0427000 0.1104000 0.0513000 37.0 70.0 19 286.27 39.77 47.37 0 47.37 0/1
chr1 146675090 rs55943908 G T . PASS 0.0620000 0.1023000 0.1300000 0.0626000 0.1104000 0.0651000 37.0 70.0 36 690.43 3.33 55.56 0 55.56 0/1
chr1 146675284 rs10900324 C T . PASS 0.8253000 0.9467000 0.9871000 0.9085000 0.8476000 0.8958000 37.0 70.0 68 1000.00 6.67 44.12 0 44.12 0/1
chr1 146675382 rs10751403 T C . PASS 0.9501000 0.9899000 0.9881000 0.9592000 0.9785000 0.9706000 36.36 70.0 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 146675551 rs4950386 A G . PASS 0.9107000 0.9856000 0.9881000 0.9592000 0.9785000 0.9597000 36.41 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 146675882 rs72708592 C A . PASS 0.0182000 0.0303000 0.0010000 0.0427000 0.1104000 0.0393000 37.0 68.67 24 517.69 0.00 62.50 0 62.50 0/1
chr1 146676006 rs17360003 A T . PASS 0.0620000 0.0331000 0.0010000 0.0427000 0.1104000 0.0513000 37.0 69.86 73 1000.00 9.48 50.68 0 50.68 0/1
chr1 146676150 rs72708595 C A . PASS 0.0620000 0.0331000 0.0010000 0.0427000 0.1104000 0.0513000 36.74 69.93 63 1000.00 7.11 73.02 0 73.02 0/1
chr1 146676190 rs6593745 A G . PASS 0.3351000 0.6988000 0.6637000 0.6630000 0.5787000 0.5651000 37.0 68.6 57 631.37 2.28 35.09 0 35.09 0/1
chr1 146676207 rs111347700 T A . PASS 0.0620000 0.0331000 0.0010000 0.0427000 0.1104000 0.0513000 36.62 69.94 57 1000.00 0.99 56.14 0 56.14 0/1
chr1 146676241 rs112129766 A G . PASS 0.0620000 0.0331000 0.0010000 0.0427000 0.1104000 0.0513000 37.0 70.0 44 712.27 9.74 47.73 0 47.73 0/1
chr1 146676289 rs72708598 T A . PASS 0.0620000 0.0331000 0.0010000 0.0427000 0.1104000 0.0513000 35.59 70.0 37 538.09 13.99 45.95 0 45.95 0/1
chr1 146676339 rs7546434 A G . PASS 0.8873000 0.9798000 0.9881000 0.9513000 0.9581000 0.9471000 36.23 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 146676383 rs55983770 C T . PASS 0.0620000 0.0331000 0.0010000 0.0427000 0.1125000 0.0517000 36.56 69.89 45 947.87 1.48 60.00 0 60.00 0/1
chr1 146680334 rs6674643 G A . PASS 0.0620000 0.0331000 0.0010000 0.0427000 0.1104000 0.0513000 37.0 70.0 13 262.57 0.00 61.54 0 61.54 0/1
chr1 146680394 rs6684454 C T . PASS 0.0620000 0.0331000 0.0010000 0.0427000 0.1115000 0.0515000 37.0 70.0 31 542.54 2.02 51.61 0 51.61 0/1
chr1 146683873 rs17360059 C T . PASS 0.0620000 0.0331000 0.0010000 0.0427000 0.1094000 0.0511000 37.0 70.0 19 244.50 13.16 42.11 0 42.11 0/1
chr1 146683888 rs28381188 G A . PASS 0.0620000 0.0331000 0.0010000 0.0427000 0.1104000 0.0513000 37.0 70.0 28 468.03 7.14 50.00 0 50.00 0/1
chr1 146684173 rs17360066 T G . PASS 0.0620000 0.0331000 0.0010000 0.0427000 0.1104000 0.0513000 37.0 70.0 13 133.12 15.38 38.46 0 38.46 0/1
chr1 146696435 rs17356031 A G . PASS 0.0613000 0.0331000 0.0010000 0.0427000 0.1104000 0.0511000 35.15 70.0 22 420.31 0.70 59.09 0 59.09 0/1
chr1 146714255 rs1890040 A G . PASS 0.5802000 0.7608000 0.6736000 0.7306000 0.7638000 0.6901000 37.0 70.0 19 758.16 0.00 100.00 0 100.00 1/1
chr1 146714281 rs1890041 C G . PASS 0.1505000 0.4049000 0.1200000 0.5109000 0.3119000 0.2835000 37.0 70.0 29 627.96 3.07 62.07 0 62.07 0/1
chr1 146714392 rs1890042 G C . PASS 0.4440000 0.6037000 0.5417000 0.5974000 0.5399000 0.5353000 37.0 70.0 91 1000.00 3.30 59.34 0 59.34 0/1
chr1 146714427 rs11588753 G C . PASS 0.0620000 0.1383000 0.1310000 0.1133000 0.1687000 0.1176000 36.16 70.0 110 1000.00 3.93 39.09 0 39.09 0/1
chr1 146724408 rs3737845 G A . PASS 0.0628000 0.1398000 0.1310000 0.1133000 0.1687000 0.1180000 36.54 70.0 44 909.11 2.80 59.09 0 59.09 0/1
chr1 146728162 rs61409326 T TA . PASS 0.9372000 0.9885000 0.9881000 0.9592000 0.9775000 0.9669000 36.73 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 146739277 rs4143738 T C . PASS 0.5628000 0.6081000 0.5556000 0.6014000 0.5368000 0.5703000 35.0 70.0 14 164.00 19.05 42.86 0 42.86 0/1
chr1 146740576 rs11576360 G A . PASS 0.6339000 0.8112000 0.6667000 0.8380000 0.7935000 0.7372000 37.0 70.0 40 640.77 1.84 47.50 0 47.50 0/1
chr1 146747153 rs6680778 T C . PASS 0.5703000 0.8012000 0.6667000 0.8300000 0.7914000 0.7171000 37.0 70.0 63 1000.00 4.56 50.79 0 50.79 0/1
chr1 146747232 rs6672850 C T . PASS 0.3041000 0.3372000 0.4216000 0.3350000 0.2924000 0.3363000 37.0 70.0 14 259.56 10.71 57.14 0 57.14 0/1
chr1 146748008 rs3831929 CAGCCA C . PASS 0.3041000 0.3372000 0.4216000 0.3350000 0.2924000 0.3363000 35.5 70.0 18 225.94 5.56 44.44 0 44.44 0/1
chr1 146751782 rs7547279 A C . PASS 0.9433000 0.9885000 0.9881000 0.9592000 0.9744000 0.9679000 36.56 70.0 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 146756222 rs368960193,rs146052781 AAAAC A . PASS 0.2882000 0.3372000 0.3919000 0.3320000 0.2914000 0.3253000 35.08 70.0 24 394.70 10.26 54.17 0 54.17 0/1
chr1 146757923 rs9661159 G A . PASS 0.0204000 0.1354000 0.1300000 0.1143000 0.1687000 0.1062000 35.91 70.0 23 345.76 3.16 47.83 0 47.83 0/1
chr1 146759320 rs2275249 C G . PASS 0.0174000 0.1383000 0.1270000 0.1143000 0.1687000 0.1052000 37.0 70.0 46 660.33 0.00 43.48 0 43.48 0/1
chr1 146763089 rs10900333 G A . PASS 0.9342000 0.7954000 0.8958000 0.7276000 0.7198000 0.8239000 37.0 70.0 16 550.94 8.33 93.75 0 93.75 1/1
chr1 146765454 rs2297752 C G . PASS 0.4160000 0.1873000 0.3155000 0.1223000 0.1800000 0.2590000 37.0 70.0 41 633.61 14.89 46.34 0 46.34 0/1
chr1 146766069 rs71083827,rs75717265 C CAT . PASS 0.9440000 0.9885000 0.9881000 0.9592000 0.9744000 0.9681000 36.55 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 146767062 rs7516430 A G . PASS 0.4160000 0.1873000 0.3155000 0.1223000 0.1810000 0.2592000 37.0 70.0 10 104.51 20.00 40.00 0 40.00 0/1
chr1 146767149 rs4950394 G T . PASS 0.9440000 0.9885000 0.9881000 0.9592000 0.9744000 0.9681000 36.61 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 147087721 rs3737843 T A . PASS 0.0174000 0.3343000 0.4028000 0.5278000 0.4029000 0.3167000 36.54 69.23 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 147091972 rs3820129 C T . PASS 0.0227000 0.2061000 0.0982000 0.4125000 0.2290000 0.1819000 35.86 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 147092881 rs41295835 C T . PASS 0.0015000 0.0173000 0.0000000 0.0557000 0.0082000 0.0155750 36.4 70.0 45 655.48 6.67 44.44 0 44.44 0/1
chr1 147096794 rs867270 A G . PASS 0.8585000 0.8862000 0.7093000 0.8847000 0.8620000 0.8383000 35.97 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 147096828 rs946902 C G . PASS 0.8638000 0.9957000 1.0000000 1.0000000 1.0000000 0.9635000 37.0 70.0 15 586.92 0.00 100.00 0 100.00 1/1
chr1 147119273 rs1344 G A . PASS 0.4281000 0.6254000 0.4226000 0.5765000 0.4029000 0.4792000 36.09 70.0 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 147121977 rs6593795 C T . PASS 0.9418000 0.9986000 1.0000000 1.0000000 1.0000000 0.9844000 36.66 70.0 105 1000.00 0.00 100.00 0 100.00 1/1
chr1 147124310 rs2153463 T G . PASS . . . . . . 36.84 70.0 154 1000.00 0.00 100.00 0 100.00 1/1
chr1 147131465 rs6674938 T C . PASS 0.7383000 0.7622000 0.7163000 0.7187000 0.5746000 0.7013000 37.0 68.46 13 507.53 0.00 100.00 0 100.00 1/1
chr1 147131501 rs34675044 A T . PASS 0.1672000 0.4006000 0.1151000 0.4334000 0.2413000 0.2570000 36.17 69.31 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 147313422 rs56163465 G C . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 36.73 69.86 130 1000.00 1.61 33.85 0 33.85 0/1
chr1 147314153 rs10900400 A G . PASS 0.1150000 0.2089000 0.2480000 0.1710000 0.0593000 0.1552000 35.8 70.0 16 325.06 10.00 62.50 0 62.50 0/1
chr1 147381444 rs1532399 A C . PASS 0.3404000 0.6902000 0.7034000 0.7704000 0.7975000 0.6376000 35.11 70.0 19 717.97 0.00 100.00 0 100.00 1/1
chr1 147561737 . T C . PASS . . . . . . 37.0 50.71 21 841.70 0.00 100.00 0 100.00 1/1
chr1 147597152 . T C . PASS . . . . . . 37.0 53.79 70 550.48 65.71 27.14 0 27.14 0/1
chr1 147597158 . T C . PASS . . . . . . 37.0 54.26 77 696.50 67.53 29.87 0 29.87 0/1
chr1 147597166 . T A . PASS . . . . . . 37.0 55.38 93 1000.00 58.27 34.41 0 34.41 0/1
chr1 147597303 rs201826633 G A . PASS . . . . . . 37.0 55.12 89 367.96 1.69 17.98 0 17.98 0/1
chr1 147597316 rs200147526 G T . PASS . . . . . . 37.0 62.44 69 131.62 23.19 13.04 0 13.04 0/1
chr1 147597385 . C G . PASS . . . . . . 37.0 46.5 13 174.87 0.00 46.15 0 46.15 0/1
chr1 147597400 . G C . PASS . . . . . . 37.0 45.5 11 97.35 0.00 36.36 0 36.36 0/1
chr1 147706326 rs113982312 C T . PASS . . . . . . 37.0 69.6 11 143.27 0.00 45.45 0 45.45 0/1
chr1 147706526 rs142484702 T C . PASS . . . . . . 36.04 69.6 116 638.62 8.07 21.55 0 21.55 0/1
chr1 147706592 rs139101841 A C . PASS . . . . . . 37.0 69.6 23 103.01 52.17 21.74 0 21.74 0/1
chr1 147737081 rs141494088 C CG . PASS 0.4039000 0.5375000 0.3482000 0.6720000 0.5317000 0.4900000 36.15 69.97 119 1000.00 0.26 96.64 0 98.32 1/1
chr1 147801279 rs41286753 C T . PASS 0.0008000 0.0072000 0.0000000 0.0149000 0.0031000 0.0047923 36.45 70.0 60 693.87 6.67 36.67 0 36.67 0/1
chr1 147920976 rs147643443 G A . PASS 0.3684000 0.4914000 0.5536000 0.4573000 0.4744000 0.4613000 35.71 54.82 84 821.51 6.61 32.14 0 33.33 0/1
chr1 147931153 . A AC . PASS . . . . . . 37.0 48.8 16 112.63 0.00 31.25 0 31.25 0/1
chr1 147931297 rs201285075 C G . PASS . . . . . . 36.82 51.73 167 1000.00 7.93 39.52 0 39.52 0/1
chr1 147931379 . C G . PASS . . . . . . 36.45 60.18 82 623.50 8.65 26.83 0 26.83 0/1
chr1 148004396 . C A . PASS . . . . . . 34.6 53.0 17 109.06 0.00 29.41 0 29.41 0/1
chr1 148004402 . G A . PASS . . . . . . 37.0 53.0 18 122.20 0.00 27.78 0 27.78 0/1
chr1 148004407 . G C . PASS . . . . . . 37.0 53.0 18 118.05 0.00 27.78 0 27.78 0/1
chr1 148004409 . T C . PASS . . . . . . 37.0 53.0 18 122.21 0.00 27.78 0 27.78 0/1
chr1 148004440 rs61810197 C A . PASS 0.0061000 0.1427000 0.1220000 0.1312000 0.2566000 0.1224000 37.0 68.58 30 374.32 0.00 40.00 0 40.00 0/1
chr1 148004472 . G A . PASS . . . . . . 36.4 65.7 45 655.48 8.89 44.44 0 44.44 0/1
chr1 148004475 rs367648584 C G . PASS 0.3283000 0.0865000 0.0784000 0.0209000 0.0706000 0.1324000 37.0 65.61 52 767.58 14.38 44.23 0 44.23 0/1
chr1 148004568 rs78765201 C A . PASS 0.1755000 0.0533000 0.0228000 0.0606000 0.0491000 0.0801000 36.52 40.28 298 98.66 26.04 8.39 0 8.39 0/1
chr1 148004584 rs78822109 G A . PASS . . . . . . 36.67 39.92 327 475.02 19.98 11.01 0 11.01 0/1
chr1 148004625 rs144324257 C A . PASS . . . . . . 36.7 38.97 270 809.51 19.81 14.81 0 14.81 0/1
chr1 148016252 rs377696733 C G . PASS 0.0121000 0.1830000 0.1597000 0.1750000 0.3640000 0.1669000 37.0 31.33 14 422.48 0.00 85.71 0 85.71 0/1
chr1 148016393 rs141716445 A C . PASS 0.1165000 0.0259000 0.0784000 0.0249000 0.0429000 0.0635000 36.19 47.92 146 1000.00 9.84 40.41 0 40.41 0/1
chr1 148017420 rs202063086 C G . PASS 0.0061000 0.1369000 0.1290000 0.1282000 0.2372000 0.1186000 37.0 33.4 15 127.08 13.33 33.33 0 33.33 0/1
chr1 148017424 rs200095021 G C . PASS 0.2216000 0.4395000 0.4980000 0.3887000 0.4724000 0.3900000 37.0 39.14 14 213.63 14.29 50.00 0 50.00 0/1
chr1 148017578 rs146750541 C T . PASS 0.0061000 0.1369000 0.1290000 0.1282000 0.2362000 0.1184000 37.0 48.89 171 622.41 8.90 16.37 0 16.37 0/1
chr1 148022984 rs9441420 T C . PASS 0.0446000 0.0130000 0.0050000 0.0099000 0.0143000 0.0193690 35.15 34.77 96 197.58 17.31 13.54 0 13.54 0/1
chr1 148023040 rs200232291 G C . PASS 0.0182000 0.1671000 0.1429000 0.1590000 0.3190000 0.1510000 36.68 53.35 141 1000.00 17.33 26.24 0 26.24 0/1
chr1 148023067 rs200903994 C T . PASS . . . . . . 37.0 47.08 124 137.33 18.24 10.48 0 10.48 0/1
chr1 148023146 rs201001638 TG T . PASS 0.0545000 0.0130000 0.0605000 0.0199000 0.0256000 0.0373000 36.45 47.18 50 260.95 0.36 22.00 0 22.00 0/1
chr1 148023207 . T C . PASS . . . . . . 37.0 43.4 16 128.22 12.50 31.25 0 31.25 0/1
chr1 148023399 . C A . PASS . . . . . . 35.0 65.67 15 156.85 13.33 40.00 0 40.00 0/1
chr1 148023403 rs201620940 G A . PASS . . . . . . 34.0 54.25 15 77.45 13.33 26.67 0 26.67 0/1
chr1 148023418 . G A . PASS . . . . . . 35.8 67.4 29 285.93 20.69 34.48 0 34.48 0/1
chr1 148023426 . T C . PASS . . . . . . 37.0 70.0 35 71.04 17.14 14.29 0 14.29 0/1
chr1 148023467 rs371979685 G A . PASS . . . . . . 37.0 68.7 47 661.47 8.51 42.55 0 42.55 0/1
chr1 148023489 rs150361541 C T . PASS 0.1944000 0.3473000 0.4851000 0.2445000 0.3722000 0.3189000 37.0 48.09 50 777.75 3.30 46.00 0 46.00 0/1
chr1 148023509 rs140737308 G A . PASS 0.6483000 0.4957000 0.4683000 0.4911000 0.4898000 0.5284000 35.67 52.33 54 532.84 14.81 33.33 0 33.33 0/1
chr1 148024903 rs75510304 C T . PASS . . . . . . 37.0 38.45 92 150.09 7.71 11.96 0 11.96 0/1
chr1 148024958 . A G . PASS . . . . . . 36.14 62.86 44 407.86 26.62 31.82 0 31.82 0/1
chr1 148024964 rs61810799 A G . PASS 0.5348000 0.2795000 0.2173000 0.1779000 0.3609000 0.3299000 36.73 59.13 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 148025606 rs78327296 C T . PASS 0.8313000 0.6614000 0.6230000 0.6133000 0.7147000 0.6993000 36.25 60.62 16 620.83 0.00 100.00 0 100.00 1/1
chr1 148251874 . T C . PASS . . . . . . 36.56 47.19 180 541.58 19.26 15.00 0 15.00 0/1
chr1 148252049 rs201353547 A C . PASS . . . . . . 35.5 48.12 60 104.94 43.33 13.33 0 13.33 0/1
chr1 148335696 . T A . PASS . . . . . . 37.0 57.5 19 323.89 42.11 52.63 0 52.63 0/1
chr1 148341745 . T C . PASS . . . . . . 37.0 42.67 12 56.72 50.00 25.00 0 25.00 0/1
chr1 148341812 rs202096824 G A . PASS . . . . . . 37.0 39.0 56 133.14 35.71 14.29 0 14.29 0/1
chr1 148341920 . C A . PASS . . . . . . 36.43 49.57 130 437.25 7.84 16.15 0 16.15 0/1
chr1 148342066 rs61809875 G T . PASS . . . . . . 37.0 42.2 29 293.80 27.59 34.48 0 34.48 0/1
chr1 148342089 . GAC GGT . PASS . . . . . . 37.0 42.75 13 59.73 30.77 23.08 1 30.77 0/1
chr1 148342090 rs61809876 A G . PASS . . . . . . 37.0 42.75 11 101.50 36.36 36.36 1 36.36 0/1
chr1 148342345 . A T . PASS 0.0522000 0.1037000 0.1488000 0.1133000 0.1022000 0.1008000 34.0 48.0 21 55.25 0.00 19.05 0 19.05 0/1
chr1 148342369 rs61809880 A G . PASS 0.1967000 0.3256000 0.3859000 0.3757000 0.3241000 0.3135000 37.0 55.86 30 169.63 13.33 23.33 0 23.33 0/1
chr1 148342373 rs61809881 C T . PASS 0.1967000 0.3256000 0.3859000 0.3757000 0.3241000 0.3135000 37.0 54.5 34 115.82 11.76 17.65 0 17.65 0/1
chr1 148342446 rs498452 A T . PASS . . . . . . 36.11 57.15 147 624.70 18.29 18.37 0 18.37 0/1
chr1 148342488 rs3863697 T C . PASS . . . . . . 37.0 56.77 193 1000.00 0.08 20.21 0 22.28 0/1
chr1 148342562 rs200973419 A G . PASS . . . . . . 37.0 54.94 129 874.14 0.10 24.03 0 24.03 0/1
chr1 148344469 rs61809888 G T . PASS . . . . . . 37.0 42.6 10 142.13 20.00 50.00 0 50.00 0/1
chr1 148344557 . G A . PASS . . . . . . 37.0 49.62 68 97.02 26.47 11.76 0 11.76 0/1
chr1 148344564 rs3895198 T C . PASS . . . . . . 36.29 52.74 75 1000.00 11.14 45.33 0 45.33 0/1
chr1 148344624 rs75650621 T A . PASS . . . . . . 36.14 56.37 240 1000.00 5.83 50.00 0 63.75 0/1
chr1 148344627 rs61809889 G A . PASS . . . . . . 36.41 68.0 246 915.68 16.26 16.67 0 16.67 0/1
chr1 148344660 rs61809890 G C . PASS . . . . . . 37.0 49.26 270 445.59 24.37 11.48 0 11.48 0/1
chr1 148344741 rs61809891 G C . PASS . . . . . . 35.56 52.68 95 685.67 45.89 26.32 0 26.32 0/1
chr1 148344843 . C G . PASS . . . . . . 31.0 39.25 15 61.29 0.00 26.67 0 26.67 0/1
chr1 148344858 . G C . PASS . . . . . . 34.0 39.25 15 73.30 0.00 26.67 0 26.67 0/1
chr1 148346783 . A G . PASS 0.0174000 0.0058000 0.0060000 0.0089000 0.0153000 0.0113820 37.0 42.1 45 249.79 17.78 22.22 0 22.22 0/1
chr1 148346785 . T C . PASS 0.0174000 0.0058000 0.0060000 0.0089000 0.0153000 0.0113820 37.0 40.44 42 217.06 17.46 21.43 0 21.43 0/1
chr1 148544980 . A G . PASS 0.0000000 0.0000000 0.0000000 0.0020000 0.0082000 0.0019968 35.5 68.88 67 88.04 4.48 11.94 0 11.94 0/1
chr1 148579625 rs201422830 T C . PASS . . . . . . 37.0 42.5 31 208.39 13.71 25.81 0 25.81 0/1
chr1 148579636 rs200012164 T C . PASS . . . . . . 37.0 46.67 44 85.72 59.09 13.64 0 13.64 0/1
chr1 148588954 . ACTG A . PASS . . . . . . 35.74 31.16 86 468.73 16.03 22.09 0 22.09 0/1
chr1 148588978 . C A . PASS . . . . . . 37.0 24.36 90 151.96 34.75 12.22 0 12.22 0/1
chr1 148756499 rs201435207 A G . PASS 0.3608000 0.4568000 0.3978000 0.4632000 0.3926000 0.4083000 35.67 45.0 11 298.35 10.10 81.82 0 81.82 0/1
chr1 148756515 rs74698828 A C . PASS 0.8275000 0.8660000 0.9087000 0.8837000 0.7975000 0.8546000 35.91 41.55 11 407.83 0.00 100.00 0 100.00 1/1
chr1 148756607 rs373485062 G T . PASS 0.5734000 0.7565000 0.6974000 0.7535000 0.6728000 0.6793000 36.0 44.92 15 407.46 3.33 80.00 0 80.00 0/1
chr1 148806435 . G A . PASS . . . . . . 37.0 46.6 24 312.99 58.33 41.67 0 41.67 0/1
chr1 148806473 . G C . PASS . . . . . . 37.0 49.2 17 121.06 70.59 29.41 0 29.41 0/1
chr1 148873322 rs3881802 T C . PASS . . . . . . 37.0 57.0 14 50.70 52.38 21.43 0 21.43 0/1
chr1 148873483 . C T . PASS . . . . . . 37.0 55.62 227 495.64 3.16 12.78 0 12.78 0/1
chr1 148873574 rs74545317 G T . PASS . . . . . . 36.48 66.39 72 695.38 6.88 31.94 0 31.94 0/1
chr1 148873584 . G A . PASS . . . . . . 37.0 49.75 67 100.03 38.81 11.94 0 11.94 0/1
chr1 148873588 rs201184728 A T . PASS . . . . . . 37.0 52.43 62 361.56 21.20 22.58 0 22.58 0/1
chr1 148876254 rs199583343 T A . PASS . . . . . . 37.0 38.0 33 156.44 11.26 21.21 0 21.21 0/1
chr1 148876274 . C T . PASS . . . . . . 37.0 44.0 47 76.70 2.13 12.77 0 12.77 0/1
chr1 148876294 rs200827760 A G . PASS . . . . . . 37.0 40.27 67 392.42 12.54 22.39 0 22.39 0/1
chr1 148876343 rs201760311 G A . PASS . . . . . . 37.0 44.11 93 63.56 1.43 9.68 0 9.68 0/1
chr1 148876400 rs421825 G A . PASS . . . . . . 37.0 59.84 101 457.17 5.52 18.81 0 18.81 0/1
chr1 148876411 rs446702 G T . PASS . . . . . . 36.37 59.63 92 468.11 5.95 20.65 0 20.65 0/1
chr1 148876432 rs79353130 C A . PASS . . . . . . 37.0 51.78 66 140.67 12.12 13.64 0 13.64 0/1
chr1 148876490 rs75373855 A G . PASS . . . . . . 35.67 53.78 48 187.00 4.17 18.75 0 18.75 0/1
chr1 148876492 rs76087296 A G . PASS . . . . . . 37.0 53.0 39 120.25 33.33 15.38 0 30.77 0/1
chr1 148876534 . T C . PASS . . . . . . 37.0 55.0 25 101.14 0.00 20.00 0 20.00 0/1
chr1 148876559 . T A . PASS . . . . . . 37.0 53.0 23 61.23 0.00 17.39 0 17.39 0/1
chr1 148876568 . G A . PASS . . . . . . 34.0 53.0 20 62.40 0.00 20.00 0 20.00 0/1
chr1 148876595 rs4089281 C G . PASS . . . . . . 37.0 51.5 15 85.32 0.00 26.67 0 26.67 0/1
chr1 148881996 rs377397732 G A . PASS . . . . . . 37.0 62.86 69 344.63 21.33 20.29 0 20.29 0/1
chr1 148882326 rs372814763 C A . PASS 0.3048000 0.3199000 0.2659000 0.4622000 0.4039000 0.3500000 37.0 53.11 101 453.03 14.17 18.81 0 18.81 0/1
chr1 148882389 rs200751874 T G . PASS . . . . . . 37.0 42.0 59 203.50 62.03 16.95 0 16.95 0/1
chr1 148882472 rs199851052 T C . PASS . . . . . . 37.0 50.25 18 80.43 0.00 22.22 0 22.22 0/1
chr1 148887541 rs149126785 T C . PASS . . . . . . 37.0 54.6 12 140.26 6.67 41.67 0 41.67 0/1
chr1 148888070 rs377229012 G A . PASS . . . . . . 35.5 47.25 33 190.36 21.21 24.24 0 24.24 0/1
chr1 148888276 rs71257934 C CAA . PASS . . . . . . 37.0 42.62 20 345.22 5.00 40.00 0 55.00 0/1
chr1 148889543 rs56278457 AT A . PASS . . . . . . 36.07 58.52 203 1000.00 6.37 45.32 0 45.32 0/1
chr1 148889550 . TTAA TT . PASS . . . . . . . . 223 682.72 8.28 40.36 1 55.61 0/1
chr1 148889551 rs76691563 T A . PASS . . . . . . 36.27 66.55 211 682.72 2.38 15.64 1 15.64 0/1
chr1 148889551 . TA T . PASS . . . . . . 35.86 68.74 212 1000.00 6.71 40.57 1 40.57 0/1
chr1 148889552 . AA A . PASS . . . . . . 35.86 68.74 213 1000.00 8.21 40.38 1 40.38 0/1
chr1 148889699 rs10157381 A G . PASS . . . . . . 36.28 64.13 259 1000.00 3.58 38.61 0 38.61 0/1
chr1 148889778 rs61788508 T C . PASS . . . . . . 36.25 58.34 77 1000.00 2.19 41.56 0 41.56 0/1
chr1 148889889 rs71264326 A G . PASS . . . . . . 37.0 61.0 18 163.98 22.22 33.33 0 33.33 0/1
chr1 148890173 rs170528 A C . PASS 0.9440000 0.9971000 1.0000000 1.0000000 1.0000000 0.9848000 35.36 55.58 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 148890273 rs200628157 A G . PASS . . . . . . 37.0 51.76 98 549.73 12.24 21.43 0 21.43 0/1
chr1 148891643 rs200975583 A G . PASS . . . . . . 37.0 49.53 126 214.85 33.97 11.90 0 11.90 0/1
chr1 148891675 rs148986249 A G . PASS . . . . . . 37.0 58.37 160 1000.00 1.62 42.50 0 42.50 0/1
chr1 148891790 rs151025 T A . PASS . . . . . . 36.14 68.21 61 352.56 7.96 22.95 0 22.95 0/1
chr1 148902223 rs151007 G A . PASS . . . . . . 35.5 61.5 28 205.41 14.29 28.57 0 28.57 0/1
chr1 148902298 rs6708279 G A . PASS . . . . . . 35.67 46.11 90 60.57 22.22 10.00 0 10.00 0/1
chr1 148902392 rs2531506 G A . PASS . . . . . . 35.94 43.85 277 517.94 7.07 12.27 0 12.27 0/1
chr1 148902416 rs28510245 T C . PASS . . . . . . 36.56 47.52 300 1000.00 17.19 18.00 0 18.00 0/1
chr1 148902483 rs55993601 G A . PASS . . . . . . 36.48 58.9 179 1000.00 7.72 77.09 0 77.09 0/1
chr1 148902522 rs77238322 G A . PASS . . . . . . 36.06 55.38 203 1000.00 16.24 43.84 0 43.84 0/1
chr1 148902589 . TAC TGG . PASS . . . . . . 36.7 54.91 205 1000.00 4.70 39.02 0 39.02 0/1
chr1 148902627 rs71258377 T C . PASS . . . . . . 36.38 50.62 166 1000.00 7.89 34.94 0 34.94 0/1
chr1 148902659 rs143619209 C T . PASS . . . . . . 35.77 49.33 108 1000.00 11.68 36.11 0 36.11 0/1
chr1 148902759 rs200898882 C G . PASS . . . . . . 37.0 48.33 40 720.16 13.81 52.50 0 52.50 0/1
chr1 148902833 rs201726721 C G . PASS . . . . . . 36.25 46.75 26 541.44 30.77 61.54 0 61.54 0/1
chr1 148902979 rs151092652 C T . PASS . . . . . . 36.25 56.15 151 1000.00 2.95 31.79 0 31.79 0/1
chr1 148903047 rs145813307 G A . PASS . . . . . . 36.29 59.09 206 1000.00 4.97 33.01 0 33.01 0/1
chr1 148903089 rs199822054 G A . PASS . . . . . . 35.74 61.68 215 90.03 4.80 8.84 0 8.84 0/1
chr1 148903118 rs200471450 C T . PASS . . . . . . 36.68 59.5 216 892.65 33.14 17.59 0 17.59 0/1
chr1 148903133 rs201570727 C T . PASS . . . . . . 35.56 61.0 199 376.81 26.49 12.56 0 12.56 0/1
chr1 148903226 . G A . PASS . . . . . . 37.0 54.25 147 360.49 18.84 13.61 0 13.61 0/1
chr1 148903238 . A C . PASS . . . . . . 37.0 52.78 160 818.45 17.50 20.00 0 20.00 0/1
chr1 148903246 rs79611996 G A . PASS . . . . . . 36.27 52.52 166 822.28 24.79 19.88 0 19.88 0/1
chr1 148903313 rs76621361 T C . PASS . . . . . . 36.52 51.02 219 1000.00 6.16 22.83 0 22.83 0/1
chr1 148903375 rs143965084 C T . PASS . . . . . . 37.0 46.17 111 594.15 30.40 20.72 0 20.72 0/1
chr1 148903507 rs142037290 A G . PASS . . . . . . 36.61 52.52 81 1000.00 28.91 38.27 0 38.27 0/1
chr1 148903547 rs76622879 C T . PASS . . . . . . 37.0 46.18 93 147.09 79.57 11.83 0 11.83 0/1
chr1 148903577 rs79177226 A G . PASS . . . . . . 37.0 48.19 96 346.93 33.33 16.67 0 16.67 0/1
chr1 148903615 . CGG CAA . PASS . . . . . . 35.71 46.71 77 305.59 33.77 18.18 0 18.18 0/1
chr1 148903639 rs74758496 A G . PASS . . . . . . 37.0 46.38 61 661.10 22.17 34.43 0 34.43 0/1
chr1 148903758 rs61786300 A G . PASS . . . . . . 36.6 57.65 134 1000.00 4.38 44.78 0 44.78 0/1
chr1 148932713 rs372189157 C T . PASS . . . . . . 37.0 55.88 35 196.35 5.71 22.86 0 22.86 0/1
chr1 148932843 . G A . PASS . . . . . . 36.69 54.64 292 1000.00 5.81 26.37 0 26.37 0/1
chr1 148932848 rs13653 A G . PASS . . . . . . 36.89 54.49 292 1000.00 1.20 36.30 0 36.30 0/1
chr1 148932885 rs1048214 C T . PASS . . . . . . 35.47 68.94 295 970.77 1.30 15.93 0 15.93 0/1
chr1 148932965 rs200950551 T C . PASS . . . . . . 37.0 55.38 72 753.30 13.89 33.33 0 33.33 0/1
chr1 149065368 rs5006227 C A . PASS 0.0182000 0.0346000 0.0585000 0.0457000 0.0961000 0.0493000 37.0 30.0 25 55.21 36.00 16.00 0 16.00 0/1
chr1 149261236 rs138043743 G T . PASS . . . . . . 36.45 57.59 42 743.90 4.33 52.38 0 52.38 0/1
chr1 149261248 rs149782666 C T . PASS 0.3850000 0.4020000 0.3254000 0.4414000 0.4448000 0.3984000 36.4 57.05 41 667.52 7.80 48.78 0 48.78 0/1
chr1 149262467 rs71620886 A T . PASS . . . . . . 37.0 60.1 59 203.50 11.53 16.95 0 16.95 0/1
chr1 149262528 rs75608424 T G . PASS . . . . . . 36.62 66.69 101 984.03 20.36 31.68 0 31.68 0/1
chr1 149262554 rs656978 T C . PASS . . . . . . 36.47 67.0 109 1000.00 19.86 41.28 0 41.28 0/1
chr1 149262915 rs2787771 T C . PASS . . . . . . 37.0 70.0 82 96.66 90.24 10.98 0 10.98 0/1
chr1 149263435 rs145340638 T A . PASS 0.4970000 0.4769000 0.4405000 0.4791000 0.5164000 0.4830000 36.63 58.65 119 1000.00 3.78 54.62 0 54.62 0/1
chr1 149263441 rs145816098 G A . PASS . . . . . . 36.8 58.21 115 1000.00 7.13 53.04 0 53.04 0/1
chr1 149263481 rs199582966,rs150102858 C CA . PASS 0.4826000 0.4452000 0.3462000 0.3907000 0.4939000 0.4337000 35.86 54.95 80 1000.00 8.33 52.50 0 52.50 0/1
chr1 149263614 rs200625415 A T . PASS . . . . . . 37.0 50.5 11 97.35 36.36 36.36 0 36.36 0/1
chr1 149291003 rs201487380 C T . PASS . . . . . . 35.0 63.5 61 261.15 41.80 19.67 0 19.67 0/1
chr1 149370665 . G A . PASS . . . . . . 37.0 45.5 22 68.39 18.18 18.18 0 18.18 0/1
chr1 149552999 rs138613319 A C . PASS . . . . . . 37.0 43.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 149553054 rs200683730 A G . PASS . . . . . . 36.11 44.44 31 978.00 0.48 87.10 0 87.10 0/1
chr1 149553166 . T C . PASS . . . . . . 36.2 45.67 27 500.81 14.81 55.56 0 55.56 0/1
chr1 149553176 . G A . PASS . . . . . . 37.0 46.86 19 202.74 27.07 36.84 0 36.84 0/1
chr1 149576430 . ACCTCCT A . PASS . . . . . . 35.2 66.0 11 282.78 0.00 90.91 0 90.91 0/1
chr1 149576441 . C T . PASS . . . . . . 35.8 66.0 12 337.10 0.00 83.33 0 83.33 0/1
chr1 149576823 . A G . PASS . . . . . . 37.0 49.09 17 375.83 6.42 64.71 0 64.71 0/1
chr1 149646759 . C T . PASS 0.0000000 0.0029000 0.0000000 0.0119000 0.0031000 0.0033946 37.0 54.36 17 375.84 8.56 64.71 0 64.71 0/1
chr1 149646993 rs150617669 C G . PASS . . . . . . 37.0 60.29 31 162.47 51.61 22.58 0 22.58 0/1
chr1 149647154 rs1756043 A C . PASS 0.9077000 0.9121000 0.8056000 0.9920000 0.9540000 0.9137000 36.25 56.6 80 1000.00 0.00 100.00 0 100.00 1/1
chr1 149647183 rs74996416 G C . PASS . . . . . . 36.6 56.67 74 981.75 9.55 40.54 0 40.54 0/1
chr1 149647518 rs139909939 A T . PASS 0.2443000 0.4827000 0.5942000 0.5994000 0.4264000 0.4547000 35.0 63.5 17 150.82 11.76 35.29 0 35.29 0/1
chr1 149648130 rs479085 T G . PASS . . . . . . 36.17 63.9 66 952.05 9.82 43.94 0 43.94 0/1
chr1 149648156 . T C . PASS . . . . . . 37.0 64.8 57 422.53 70.18 26.32 0 26.32 0/1
chr1 149648168 . A G . PASS . . . . . . 37.0 64.0 60 329.95 73.33 21.67 0 21.67 0/1
chr1 149648285 rs147167068 GAGTTCTAAACA G . PASS 0.4561000 0.3804000 0.1687000 0.3280000 0.4785000 0.3664000 35.53 63.88 41 465.83 8.32 41.46 0 41.46 0/1
chr1 149648547 rs482887 C T . PASS . . . . . . 36.18 59.55 177 1000.00 4.19 41.24 0 41.24 0/1
chr1 149648627 rs2481101 A G . PASS . . . . . . 36.03 69.12 236 1000.00 3.79 67.80 0 68.22 0/1
chr1 149648696 rs654715 G A . PASS . . . . . . 36.43 68.98 225 1000.00 6.06 37.33 0 37.33 0/1
chr1 149676401 rs146138154 A G . PASS . . . . . . 36.89 58.8 249 1000.00 3.34 45.78 0 45.78 0/1
chr1 149726032 rs2664744 T C . PASS 0.4970000 0.4986000 0.5000000 0.4970000 0.5000000 0.4984000 36.08 50.23 23 429.30 18.73 56.52 0 56.52 0/1
chr1 149726118 rs2664745 A G . PASS 0.5008000 0.5014000 0.5000000 0.5000000 0.5000000 0.5004000 35.0 44.67 12 170.03 0.00 50.00 0 50.00 0/1
chr1 149783886 rs139776319 C T . PASS 0.0068000 0.0331000 0.0010000 0.0915000 0.0082000 0.0266000 36.14 67.64 68 908.42 7.56 41.18 0 41.18 0/1
chr1 149784689 rs370907162 CCCA C . PASS 0.0734000 0.0317000 0.0000000 0.0924000 0.0082000 0.0266000 37.0 69.0 16 199.19 0.00 43.75 0 43.75 0/1
chr1 149784752 . C T . PASS 0.0008000 0.0101000 0.0069000 0.0417000 0.0358000 0.0183710 35.11 69.05 44 592.70 18.18 43.18 0 43.18 0/1
chr1 149813866 rs200138530 G A . PASS . . . . . . 37.0 51.6 21 113.17 15.24 23.81 0 23.81 0/1
chr1 149813886 . G A . PASS . . . . . . 37.0 50.89 27 262.19 7.41 33.33 0 33.33 0/1
chr1 149815013 rs3029050 GCTCC G . PASS 0.3086000 0.0375000 0.0079000 0.0457000 0.0389000 0.1050000 37.0 65.43 22 187.15 72.73 31.82 1 31.82 0/1
chr1 149815015 . TC T . PASS . . . . . . 37.0 65.43 19 193.17 63.16 36.84 1 36.84 0/1
chr1 149815016 . CC C . PASS . . . . . . 37.0 65.43 19 193.17 63.16 36.84 1 36.84 0/1
chr1 149821912 rs138035086 CGGAG C . PASS 0.3086000 0.0418000 0.0129000 0.0457000 0.0389000 0.1066000 34.43 56.71 13 193.22 26.37 53.85 0 53.85 0/1
chr1 149823060 . C T . PASS . . . . . . 37.0 52.67 28 133.87 0.00 21.43 0 21.43 0/1
chr1 149871905 rs1044808 G C . PASS 0.0008000 0.0288000 0.0000000 0.0865000 0.0082000 0.0232000 36.83 70.0 114 1000.00 0.44 63.16 0 63.16 0/1
chr1 149880863 rs68002561 A G . PASS 0.4652000 0.0821000 0.0010000 0.0944000 0.0112000 0.1556000 37.0 70.0 33 536.52 8.33 48.48 0 48.48 0/1
chr1 149881173 rs55909843 A C . PASS 0.4856000 0.0908000 0.0079000 0.1282000 0.0256000 0.1731000 36.21 70.0 76 1000.00 0.00 100.00 0 100.00 1/1
chr1 149881183 rs56351279 C T . PASS 0.4357000 0.0893000 0.0089000 0.1262000 0.0245000 0.1593000 36.21 70.0 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 149897966 rs72692812 T G . PASS 0.0008000 0.0331000 0.0010000 0.0875000 0.0082000 0.0242000 37.0 70.0 19 198.59 30.08 36.84 0 36.84 0/1
chr1 149898951 rs16836630 G C . PASS 0.1853000 0.0476000 0.0010000 0.0895000 0.0082000 0.0753000 37.0 70.0 17 162.84 43.14 35.29 0 35.29 0/1
chr1 149900610 rs1804775 T C . PASS 0.0091000 0.0346000 0.0010000 0.0905000 0.0082000 0.0272000 37.0 70.0 13 179.03 0.00 46.15 0 46.15 0/1
chr1 149902588 rs72692816 A G . PASS 0.0091000 0.0346000 0.0010000 0.0905000 0.0082000 0.0272000 37.0 70.0 14 50.70 42.86 21.43 0 21.43 0/1
chr1 149903122 rs72692819 G C . PASS 0.0703000 0.0375000 0.0010000 0.0895000 0.0082000 0.0435000 36.14 70.0 67 907.27 3.30 41.79 0 41.79 0/1
chr1 149905279 rs72692821 G A . PASS 0.0242000 0.2911000 0.3403000 0.1332000 0.1943000 0.1799000 37.0 70.0 67 726.58 0.13 34.33 0 34.33 0/1
chr1 149908108 rs1868992 A G . PASS 0.6914000 0.3991000 0.3571000 0.2594000 0.2812000 0.4167000 36.14 70.0 61 929.48 0.47 45.90 0 45.90 0/1
chr1 149931541 rs4926400 G A . PASS 0.0250000 0.2939000 0.3433000 0.1292000 0.2495000 0.1911000 37.0 70.0 11 226.81 2.60 63.64 0 63.64 0/1
chr1 150027004 rs7550323 T C . PASS 0.1989000 0.0850000 0.0010000 0.1700000 0.0266000 0.1038000 37.0 69.89 13 304.34 11.97 69.23 0 69.23 0/1
chr1 150049934 rs72692897 A G . PASS 0.2095000 0.0893000 0.0010000 0.1740000 0.0256000 0.1078000 35.43 70.0 45 756.78 10.43 51.11 0 51.11 0/1
chr1 150049982 rs72692898 C T . PASS 0.0023000 0.0620000 0.0010000 0.1690000 0.0256000 0.0483000 37.0 70.0 17 166.99 0.00 35.29 0 35.29 0/1
chr1 150122493 rs4553237 T C . PASS 0.9750000 0.9971000 1.0000000 0.9990000 1.0000000 0.9928000 35.7 69.46 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 150128425 rs1545762 C T . PASS 0.3336000 0.8790000 0.9990000 0.8250000 0.9744000 0.7670000 36.38 70.0 94 1000.00 5.06 61.70 0 61.70 0/1
chr1 150129267 rs10749675 G A . PASS 0.9266000 0.9942000 1.0000000 1.0000000 1.0000000 0.9798000 36.62 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 150129335 rs3208509 G A . PASS 0.3676000 0.8804000 0.9990000 0.8241000 0.9744000 0.7760000 37.0 70.0 10 188.06 0.00 60.00 0 60.00 0/1
chr1 150130982 rs143570918 G GC . PASS 0.1324000 0.0836000 0.0010000 0.1650000 0.0194000 0.0837000 36.5 70.0 60 761.82 1.67 40.00 1 40.00 0/1
chr1 150130982 rs374923164 GG GCT . PASS . . . . . . . . 62 728.48 0.84 37.10 1 37.10 0/1
chr1 150130983 rs34773647 G T . PASS 0.1324000 0.0836000 0.0010000 0.1650000 0.0194000 0.0837000 36.48 70.0 61 728.48 2.85 37.70 1 37.70 0/1
chr1 150187336 rs6680040 T C . PASS 0.5817000 0.4380000 0.6240000 0.4274000 0.5061000 0.5246000 37.0 70.0 91 946.75 12.23 32.97 0 32.97 0/1
chr1 150199123 rs7522034 G T . PASS 0.9228000 0.4683000 0.5456000 0.4304000 0.4980000 0.6020000 35.67 70.0 20 267.10 16.67 45.00 0 45.00 0/1
chr1 150249101 rs11205354 C A . PASS 0.8994000 0.6859000 0.6915000 0.4751000 0.6176000 0.6877000 35.4 70.0 28 481.64 8.57 53.57 0 53.57 0/1
chr1 150258838 rs1122967 C G . PASS 0.9667000 0.7190000 0.7738000 0.5497000 0.6493000 0.7478000 36.2 70.0 28 493.65 8.57 53.57 0 53.57 0/1
chr1 150298192 rs11205362 G A . PASS 0.0008000 0.0548000 0.0010000 0.1382000 0.0256000 0.0407000 36.25 70.0 37 512.48 11.82 43.24 0 43.24 0/1
chr1 150300727 rs834225 T C . PASS 0.7027000 0.4942000 0.2817000 0.5944000 0.3722000 0.5028000 37.0 70.0 23 925.24 0.00 100.00 0 100.00 1/1
chr1 150315759 . G GGTATACTAATATCTCTGCCTGACAGTTGACA . PASS . . . . . . 36.75 70.0 15 72.88 6.67 26.67 0 26.67 0/1
chr1 150337289 rs72696841 G T . PASS 0.0008000 0.0548000 0.0010000 0.1382000 0.0256000 0.0407000 36.5 70.0 104 1000.00 1.92 46.15 0 46.15 0/1
chr1 150415631 rs3862206 T G . PASS 0.3616000 0.1182000 0.0020000 0.2078000 0.0491000 0.1635000 37.0 70.0 16 207.61 37.50 43.75 0 43.75 0/1
chr1 150416913 rs16836940 A G . PASS 0.6664000 0.2450000 0.0585000 0.2087000 0.0521000 0.2738000 37.0 70.0 16 462.39 8.65 81.25 0 81.25 0/1
chr1 150429944 rs41273537 A G . PASS 0.0008000 0.0562000 0.0020000 0.1372000 0.0256000 0.0409000 36.25 70.0 77 1000.00 6.49 41.56 0 41.56 0/1
chr1 150432802 rs12029359 G A . PASS 0.0257000 0.1614000 0.1796000 0.2068000 0.1800000 0.1420000 35.2 70.0 37 655.54 3.51 54.05 0 54.05 0/1
chr1 150437215 rs66513313 A G . PASS 0.3623000 0.1182000 0.0020000 0.2068000 0.0491000 0.1635000 36.41 70.0 70 1000.00 2.58 58.57 0 58.57 0/1
chr1 150445819 rs7002 A G . PASS 0.0340000 0.2536000 0.2242000 0.3857000 0.3221000 0.2296000 36.56 70.0 45 947.88 2.96 60.00 0 60.00 0/1
chr1 150463772 rs7542068 C G . PASS 0.3623000 0.1167000 0.0020000 0.2068000 0.0481000 0.1631000 37.0 70.0 10 100.36 0.00 40.00 0 40.00 0/1
chr1 150468842 rs1343965 A G . PASS 0.3623000 0.1153000 0.0020000 0.2068000 0.0481000 0.1629000 37.0 70.0 11 268.58 13.64 72.73 0 72.73 0/1
chr1 150470296 rs11588874 G A . PASS 0.3623000 0.1153000 0.0020000 0.2068000 0.0481000 0.1629000 35.5 70.0 17 238.51 23.53 47.06 0 47.06 0/1
chr1 150470322 rs11590324 C A . PASS 0.0915000 0.2622000 0.2212000 0.3837000 0.3200000 0.2446000 37.0 70.0 11 97.35 0.00 36.36 0 36.36 0/1
chr1 150477061 rs3738487 C T . PASS 0.0318000 0.2550000 0.2212000 0.3847000 0.2986000 0.2238000 35.96 70.0 61 1000.00 2.64 75.41 0 75.41 0/1
chr1 150482255 rs41264469 A G . PASS 0.0008000 0.0648000 0.0010000 0.1630000 0.0327000 0.0485000 36.64 69.39 79 1000.00 10.82 41.77 0 41.77 0/1
chr1 150482738 rs11205387 G A . PASS 0.1831000 0.3098000 0.2907000 0.2594000 0.2464000 0.2500000 37.0 70.0 29 548.56 10.78 55.17 0 55.17 0/1
chr1 150483355 rs3737240 C T . PASS 0.0325000 0.2493000 0.2371000 0.3757000 0.2945000 0.2238000 35.91 69.55 69 1000.00 0.99 63.77 0 63.77 0/1
chr1 150483840 rs4970979 C T . PASS 0.5741000 0.4856000 0.2976000 0.5934000 0.3497000 0.4663000 37.0 70.0 21 841.70 0.00 100.00 0 100.00 1/1
chr1 150484395 rs149815479 ACC A . PASS 0.6165000 0.4928000 0.2966000 0.5934000 0.3497000 0.4782000 36.41 70.0 22 623.28 0.00 100.00 0 100.00 1/1
chr1 150484987 rs13294 G A . PASS 0.1747000 0.2709000 0.2371000 0.3827000 0.2986000 0.2666000 37.0 70.0 115 1000.00 8.70 43.48 0 43.48 0/1
chr1 150526044 rs41317515 G C . PASS 0.6074000 0.4337000 0.5675000 0.5338000 0.4427000 0.5284000 36.71 70.0 64 1000.00 0.30 64.06 0 64.06 0/1
chr1 150526406 rs6681639 C T . PASS 0.5832000 0.2666000 0.3056000 0.2853000 0.1922000 0.3472000 36.2 70.0 89 1000.00 3.35 50.56 0 50.56 0/1
chr1 150528090 rs146160043 G GACAC . PASS . . . . . . 36.77 70.0 57 929.95 4.89 49.12 0 49.12 0/1
chr1 150528118 rs149100901 T TACAC . PASS 0.5242000 0.7378000 0.8363000 0.6292000 0.7873000 0.6891000 36.75 70.0 29 397.67 9.02 44.83 0 44.83 0/1
chr1 150529322 rs34379037 T TAA . PASS 0.8759000 0.9697000 0.9990000 0.9523000 0.9622000 0.9459000 36.38 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 150531008 rs10888382 T C . PASS 0.6475000 0.9049000 0.8373000 0.9314000 0.8323000 0.8145000 36.5 70.0 96 1000.00 0.00 100.00 0 100.00 1/1
chr1 150531050 rs10749657 G A . PASS 0.8290000 0.8444000 0.9831000 0.8390000 0.9018000 0.8784000 36.3 70.0 86 1000.00 0.00 100.00 0 100.00 1/1
chr1 150531170 rs10749658 C T . PASS 0.7133000 0.9841000 1.0000000 0.9970000 1.0000000 0.9215000 36.86 70.0 86 1000.00 0.00 100.00 0 100.00 1/1
chr1 150531380 rs11204664 T C . PASS 0.4304000 0.4481000 0.6915000 0.5855000 0.4693000 0.5242000 35.76 69.31 51 989.33 1.35 56.86 0 56.86 0/1
chr1 150532376 rs56411234 G A . PASS 0.0015000 0.0101000 0.0000000 0.0278000 0.0010000 0.0075879 36.76 69.6 85 1000.00 0.94 58.82 0 58.82 0/1
chr1 150536180 rs111358816 C CAAG . PASS 0.4637000 0.5029000 0.5248000 0.5736000 0.3763000 0.4864000 36.4 69.57 72 1000.00 3.00 68.06 0 68.06 0/1
chr1 150552042 rs16837903 G A . PASS 0.0068000 0.1052000 0.0248000 0.1461000 0.0491000 0.0603000 37.0 70.0 19 286.27 7.02 47.37 0 47.37 0/1
chr1 150671243 rs139837908 AC A . PASS 0.2852000 0.4597000 0.3581000 0.4314000 0.5695000 0.4089000 35.38 70.0 20 218.92 10.00 40.00 0 40.00 0/1
chr1 150679033 rs1336900 G A . PASS 0.2269000 0.4467000 0.3571000 0.4095000 0.5613000 0.3856000 36.4 70.0 40 670.53 0.00 50.00 0 50.00 0/1
chr1 150679358 rs11586422 C T . PASS 0.2859000 0.4597000 0.3581000 0.4314000 0.5695000 0.4091000 35.5 70.0 17 238.52 22.06 47.06 0 47.06 0/1
chr1 150686633 rs34593358 A T . PASS 0.0809000 0.2003000 0.1885000 0.2416000 0.1350000 0.1619000 37.0 68.82 27 592.21 0.44 62.96 0 62.96 0/1
chr1 150727539 rs2230061 G A . PASS 0.2610000 0.4366000 0.3532000 0.3698000 0.5511000 0.3824000 37.0 70.0 69 1000.00 5.25 46.38 0 46.38 0/1
chr1 150730279 rs2275235 A G . PASS 0.2587000 0.4380000 0.4058000 0.3718000 0.5532000 0.3934000 37.0 70.0 35 446.96 14.29 40.00 0 40.00 0/1
chr1 150771703 rs10788796 T C . PASS 0.8986000 0.9870000 0.9931000 0.9980000 0.9673000 0.9633000 36.03 70.0 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 150789961 rs3894771 A T . PASS 0.6082000 0.4597000 0.5050000 0.4264000 0.5245000 0.5140000 37.0 70.0 16 207.62 1.79 43.75 0 43.75 0/1
chr1 150808889 rs2228099 C G . PASS 0.5174000 0.4625000 0.4018000 0.3926000 0.5665000 0.4710000 36.22 70.0 103 1000.00 7.18 44.66 0 44.66 0/1
chr1 150849071 rs34415707 AC A . PASS . . . . . . 35.94 70.0 140 1000.00 1.87 92.14 0 92.14 0/1
chr1 150916657 rs2271076 C T . PASS 0.5825000 0.5476000 0.4355000 0.3897000 0.5235000 0.4978000 36.45 70.0 78 1000.00 7.93 56.41 0 56.41 0/1
chr1 150938571 rs8444 G A . PASS 0.2693000 0.5144000 0.4345000 0.3668000 0.5153000 0.4042000 34.33 70.0 40 550.96 15.00 45.00 0 45.00 0/1
chr1 150938616 rs267739 G A . PASS 0.9251000 0.9928000 1.0000000 1.0000000 1.0000000 0.9792000 36.58 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 150939744 rs11204750 C A . PASS 0.2194000 0.5130000 0.4345000 0.3688000 0.5153000 0.3912000 37.0 70.0 27 299.82 21.48 37.04 0 37.04 0/1
chr1 150940356 . GGC GTT . PASS . . . . . . 35.71 70.0 76 839.58 0.75 36.84 0 36.84 0/1
chr1 150941381 rs752376 C T . PASS 0.5817000 0.5476000 0.4355000 0.3897000 0.5225000 0.4974000 36.44 70.0 91 1000.00 3.17 47.25 0 47.25 0/1
chr1 150958977 rs2305814 T C . PASS 0.5182000 0.6095000 0.5883000 0.4453000 0.6237000 0.5509000 37.0 70.0 35 655.82 5.41 54.29 0 54.29 0/1
chr1 150960350 rs7532008 A C . PASS 0.5106000 0.4092000 0.5813000 0.3429000 0.5859000 0.4918000 37.0 70.0 41 424.75 16.03 34.15 0 34.15 0/1
chr1 150969992 rs2925740 T C . PASS 0.6641000 0.9524000 1.0000000 0.9344000 0.9939000 0.8904000 36.54 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 150970577 rs2925741 G T . PASS 0.7943000 0.9856000 1.0000000 0.9980000 1.0000000 0.9433000 36.02 69.67 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 150972538 rs708909 G A . PASS 0.8457000 0.9870000 1.0000000 0.9980000 0.9980000 0.9567000 35.8 70.0 10 370.22 0.00 100.00 0 100.00 1/1
chr1 150974162 rs771204 G A . PASS 0.7254000 0.8833000 0.8413000 0.8300000 0.8834000 0.8225000 37.0 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 150975108 rs771205 T C . PASS 0.3192000 0.9424000 0.8492000 0.9692000 0.9141000 0.7590000 36.56 70.0 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 150990466 rs71090118 C CAT . PASS 0.1316000 0.4236000 0.4236000 0.5517000 0.5900000 0.4048000 36.28 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 150999863 rs55717234 A G . PASS 0.4592000 0.3963000 0.2629000 0.5686000 0.7055000 0.4810000 36.27 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 151006539 rs3738476 C A . PASS 0.4387000 0.5187000 0.5952000 0.5030000 0.5164000 0.5094000 36.59 69.97 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 151010934 rs12119096 G A . PASS 0.0000000 0.0000000 0.0000000 0.0020000 0.0000000 0.0003994 37.0 70.0 15 465.39 8.21 86.67 0 86.67 0/1
chr1 151019180 rs6587553 A G . PASS 0.7118000 0.8228000 0.9077000 0.8111000 0.8395000 0.8115000 37.0 70.0 66 1000.00 12.12 50.00 0 50.00 0/1
chr1 151026815 rs2902810 C T . PASS 0.6884000 0.8098000 0.9058000 0.8062000 0.8384000 0.8019000 36.25 70.0 34 521.51 13.97 47.06 0 47.06 0/1
chr1 151028234 rs11204767 G T . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.41 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 151104950 rs10788800 G A . PASS 0.2103000 0.7334000 0.8770000 0.7237000 0.7321000 0.6220000 36.57 70.0 58 950.51 3.45 48.28 0 48.28 0/1
chr1 151105076 rs75585997 G A . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 35.8 70.0 73 964.88 11.96 41.10 0 41.10 0/1
chr1 151105824 rs4971006 C G . PASS 0.5371000 0.7939000 0.9028000 0.8121000 0.8272000 0.7582000 37.0 70.0 80 1000.00 3.61 45.00 0 45.00 0/1
chr1 151108137 rs4971007 T G . PASS 0.7632000 0.8084000 0.9048000 0.8201000 0.8354000 0.8235000 36.66 70.0 65 1000.00 5.27 53.85 0 53.85 0/1
chr1 151110832 rs72708441 G A . PASS 0.0038000 0.0490000 0.0000000 0.0805000 0.0123000 0.0264000 37.0 69.35 82 1000.00 8.65 37.80 0 37.80 0/1
chr1 151146186 rs7552226 C G . PASS 0.8480000 0.9841000 0.9286000 0.9861000 0.9192000 0.9247000 37.0 70.0 22 879.32 0.00 100.00 0 100.00 1/1
chr1 151149601 rs6656261 A G . PASS 0.9168000 0.9957000 1.0000000 1.0000000 1.0000000 0.9774000 36.67 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 151209063 rs12407426 C T . PASS 0.6657000 0.6138000 0.6121000 0.7008000 0.5971000 0.6414000 36.74 67.48 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 151210789 rs7532935 C T . PASS 0.5053000 0.6023000 0.6121000 0.6958000 0.5879000 0.5946000 36.64 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 151212399 rs141190258,rs59256423 C CCTT . PASS 0.8359000 0.7968000 0.6736000 0.8817000 0.6963000 0.7798000 36.33 70.0 31 1000.00 2.15 96.77 0 100.00 1/1
chr1 151227371 rs3811405 A G . PASS 0.8374000 0.7680000 0.6766000 0.8280000 0.6718000 0.7612000 35.8 70.0 10 370.22 0.00 100.00 0 100.00 1/1
chr1 151237589 rs3216063 TC T . PASS 0.6649000 0.6182000 0.6121000 0.7048000 0.5982000 0.6428000 36.38 70.0 21 819.12 0.00 100.00 0 100.00 1/1
chr1 151239051 rs7489 T C . PASS 0.6384000 0.6167000 0.6121000 0.7048000 0.5971000 0.6354000 36.48 69.96 92 1000.00 0.00 100.00 0 100.00 1/1
chr1 151263677 rs145032688 G GACA . PASS 0.0023000 0.0144000 0.0000000 0.0547000 0.0143000 0.0163740 36.68 70.0 138 1000.00 6.45 44.93 0 44.93 0/1
chr1 151263782 rs10788803 A G . PASS 0.4546000 0.5937000 0.6200000 0.6352000 0.5930000 0.5705000 36.66 69.81 105 1000.00 0.00 100.00 0 100.00 1/1
chr1 151288172 rs1056847 G A . PASS 0.2693000 0.5735000 0.5764000 0.6342000 0.5920000 0.5096000 36.1 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 151288391 rs1752379 A G . PASS 0.9198000 0.9957000 1.0000000 1.0000000 1.0000000 0.9782000 36.5 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 151316161 rs1752386 G A . PASS 0.9191000 0.9957000 1.0000000 1.0000000 1.0000000 0.9780000 36.87 70.0 92 1000.00 0.00 100.00 0 100.00 1/1
chr1 151337703 rs72710112 C T . PASS 0.0166000 0.0086000 0.0000000 0.0169000 0.0061000 0.0101840 36.41 69.51 98 1000.00 1.19 41.84 0 41.84 0/1
chr1 151337788 rs10788804 A G . PASS 0.2352000 0.5576000 0.5863000 0.6173000 0.6503000 0.5084000 36.38 70.0 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 151340830 rs72710113 A G . PASS 0.0091000 0.0115000 0.0010000 0.0249000 0.0041000 0.0099840 37.0 70.0 32 497.77 15.42 46.88 0 46.88 0/1
chr1 151341728 rs35093538 G GC . PASS 0.6846000 0.6412000 0.2956000 0.5278000 0.3037000 0.4944000 37.0 70.0 17 402.01 13.73 70.59 0 70.59 0/1
chr1 151372138 rs7172 G A . PASS 0.3321000 0.4669000 0.2123000 0.8350000 0.6667000 0.4930000 36.52 70.0 100 1000.00 0.00 100.00 0 100.00 1/1
chr1 151372770 rs2495390 A G . PASS 0.9183000 0.9971000 1.0000000 1.0000000 1.0000000 0.9780000 35.91 70.0 22 859.44 0.00 100.00 0 100.00 1/1
chr1 151373200 rs2495391 T C . PASS 0.9100000 0.9971000 1.0000000 1.0000000 1.0000000 0.9758000 35.62 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 151377248 rs6667714 T C . PASS 0.9100000 0.9971000 1.0000000 1.0000000 1.0000000 0.9758000 36.4 70.0 20 787.91 0.00 100.00 0 100.00 1/1
chr1 151379250 rs2274535 G A . PASS 0.3328000 0.4654000 0.2093000 0.8350000 0.6646000 0.4920000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 151380505 . AA A . PASS . . . . . . 35.06 70.0 17 551.39 2.21 94.12 1 94.12 1/1
chr1 151380505 . AAAG AAAA . PASS . . . . . . 37.0 70.0 19 551.39 52.63 5.26 1 100.00 0/1
chr1 151380505 . AAAG A . PASS . . . . . . 34.94 70.0 19 551.39 2.92 94.74 1 100.00 0/1
chr1 151380506 rs57279505 AA A . PASS . . . . . . 35.06 70.0 17 551.39 2.21 94.12 1 94.12 1/1
chr1 151380507 rs148187584 AG A . PASS . . . . . . 35.18 70.0 17 592.26 2.21 94.12 1 100.00 1/1
chr1 151381320 rs3831142 GA G . PASS 0.3313000 0.4654000 0.2113000 0.8350000 0.6646000 0.4920000 36.44 70.0 55 1000.00 0.00 100.00 0 100.00 1/1
chr1 151384733 rs3748550 G A . PASS 0.8449000 0.6960000 0.6825000 0.8539000 0.7975000 0.7841000 36.52 70.0 25 996.76 0.00 100.00 0 100.00 1/1
chr1 151395782 rs2274533 T C . PASS 0.5560000 0.4769000 0.2113000 0.8320000 0.6656000 0.5525000 35.0 70.0 12 441.74 0.00 100.00 0 100.00 1/1
chr1 151396037 rs2274534 A C . PASS 0.3268000 0.4640000 0.2113000 0.8350000 0.6656000 0.4908000 36.12 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 151400942 rs11204811 A C . PASS 0.3729000 0.4683000 0.2113000 0.8350000 0.6636000 0.5032000 36.82 70.0 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 151402045 rs6587577 A G . PASS 0.7534000 0.6902000 0.6825000 0.8539000 0.7965000 0.7590000 36.32 69.62 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 151403380 rs145138089,rs71795199,rs74263412,rs71903837 CTTTAT C . PASS 0.5877000 0.7666000 0.5764000 0.9284000 0.8579000 0.7314000 35.73 70.0 16 481.78 3.33 93.75 0 93.75 1/1
chr1 151497140 rs1573130 T C . PASS 0.5424000 0.4150000 0.8115000 0.1750000 0.3384000 0.4653000 37.0 70.0 32 957.24 9.62 81.25 0 81.25 0/1
chr1 151497376 rs1573129 G A . PASS 0.1672000 0.4035000 0.7927000 0.1720000 0.3364000 0.3598000 35.71 70.0 61 917.48 6.67 45.90 0 45.90 0/1
chr1 151499635 rs2298168 C T . PASS 0.3457000 0.5720000 0.1885000 0.8250000 0.6472000 0.5006000 37.0 70.0 32 706.62 16.25 62.50 0 62.50 0/1
chr1 151512802 rs16833376 G T . PASS 0.0340000 0.1110000 0.0466000 0.2555000 0.1534000 0.1150000 36.05 70.0 52 1000.00 8.84 71.15 0 73.08 0/1
chr1 151529918 rs11204848 C T . PASS 0.1657000 0.5101000 0.6290000 0.3469000 0.2986000 0.3690000 35.91 69.91 21 351.79 24.24 52.38 0 52.38 0/1
chr1 151534142 rs4132646 A C . PASS 0.1664000 0.5115000 0.6300000 0.3499000 0.2986000 0.3702000 36.56 70.0 54 916.64 3.70 50.00 0 50.00 0/1
chr1 151538784 rs57179871,rs140188723 T TTC . PASS 0.0408000 0.3674000 0.3690000 0.0845000 0.2526000 0.2023000 36.14 70.0 31 179.78 45.97 25.81 0 25.81 0/1
chr1 151546931 rs6660238 A G . PASS 0.8548000 0.8184000 0.9296000 0.9076000 0.9836000 0.9006000 37.0 70.0 16 211.76 7.14 43.75 0 43.75 0/1
chr1 151551320 rs3748608 G A . PASS 0.2791000 0.5461000 0.4187000 0.6720000 0.4663000 0.4597000 37.0 69.29 76 908.34 0.75 36.84 0 36.84 0/1
chr1 151552301 rs3833527 TG T . PASS 0.2799000 0.5461000 0.4187000 0.6720000 0.4673000 0.4601000 37.0 70.0 26 380.95 12.82 46.15 0 46.15 0/1
chr1 151588735 rs12122920 G A . PASS 0.0219000 0.4092000 0.1974000 0.5616000 0.3292000 0.2794000 34.6 70.0 20 751.87 0.00 100.00 0 100.00 1/1
chr1 151588815 rs1196357 A G . PASS 0.3177000 0.4870000 0.3681000 0.6650000 0.4601000 0.4489000 35.41 69.71 68 1000.00 0.00 100.00 0 100.00 1/1
chr1 151634803 rs11808761 G A . PASS 0.0212000 0.3977000 0.1974000 0.5268000 0.3262000 0.2700000 37.0 70.0 20 758.16 8.95 95.00 0 100.00 1/1
chr1 151700189 rs72506285 C CCTG . PASS 0.8979000 0.8833000 0.8601000 0.8628000 0.8742000 0.8766000 36.69 70.0 12 437.17 0.00 100.00 0 100.00 1/1
chr1 151740479 rs1196457 C A . PASS 0.9992000 1.0000000 1.0000000 1.0000000 1.0000000 0.9998000 36.25 70.0 16 616.68 0.00 100.00 0 100.00 1/1
chr1 151740666 rs2495397 T C . PASS 0.9985000 1.0000000 1.0000000 1.0000000 1.0000000 0.9996000 36.88 70.0 101 1000.00 1.13 99.01 0 100.00 1/1
chr1 151747043 rs1123855 C T . PASS 0.2201000 0.2695000 0.1984000 0.5139000 0.4121000 0.3191000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 151747733 rs1781421 C T . PASS 0.2201000 0.2709000 0.1786000 0.5139000 0.4100000 0.3149000 37.0 70.0 16 632.84 0.00 100.00 0 100.00 1/1
chr1 151747799 rs1781419 G A . PASS 0.7284000 0.6513000 0.6954000 0.6581000 0.7812000 0.7073000 36.74 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 151748425 rs3923394 C A . PASS 0.6074000 0.4251000 0.3194000 0.6531000 0.5235000 0.5170000 37.0 70.0 11 419.85 0.00 100.00 0 100.00 1/1
chr1 151750963 rs1996730 C T . PASS 0.9985000 1.0000000 1.0000000 1.0000000 1.0000000 0.9996000 36.29 69.9 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 151751081 rs1996729 G A . PASS 0.2247000 0.2709000 0.1984000 0.5139000 0.4131000 0.3207000 36.08 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 151754112 rs35077383 T C . PASS 0.2216000 0.2752000 0.1994000 0.5149000 0.4121000 0.3207000 36.25 70.0 16 620.83 0.00 100.00 0 100.00 1/1
chr1 151780177 rs3828057 C T . PASS 0.2110000 0.2334000 0.1716000 0.4364000 0.3834000 0.2851000 35.4 70.0 22 503.85 3.03 68.18 0 68.18 0/1
chr1 151789588 rs151171878 C CTGTGTG . PASS . . . . . . 36.6 70.0 19 718.55 3.01 36.84 0 100.00 0/1
chr1 151789588 rs151171878 C CTGTGTGTG . PASS 0.2163000 0.4524000 0.4504000 0.4602000 0.4479000 0.3904000 36.38 70.0 19 718.55 12.87 47.37 0 100.00 0/1
chr1 151789609 rs56273334 C T . PASS 0.8578000 0.9885000 0.9990000 0.9970000 0.9990000 0.9599000 35.75 70.0 24 859.44 4.55 91.67 0 100.00 1/1
chr1 151789611 rs55841824 C T . PASS 0.7020000 0.6340000 0.8472000 0.8767000 0.8476000 0.7853000 35.62 70.0 27 339.74 4.71 40.74 0 48.15 0/1
chr1 151789647 rs12144914 T G . PASS 0.2670000 0.2781000 0.4702000 0.5507000 0.4294000 0.3982000 36.11 70.0 49 919.67 9.07 55.10 0 55.10 0/1
chr1 151801951 rs4845606 G A . PASS 0.1354000 0.2320000 0.1488000 0.1183000 0.1350000 0.1480000 34.18 70.0 53 470.06 8.66 32.08 0 32.08 0/1
chr1 151809254 . CT C . PASS . . . . . . 36.0 70.0 10 172.49 26.67 60.00 0 60.00 0/1
chr1 151810304 rs12122596 G C . PASS 0.4818000 0.5331000 0.3750000 0.4980000 0.6943000 0.5122000 37.0 70.0 14 213.64 0.00 50.00 0 50.00 0/1
chr1 151811226 rs6673556 G A . PASS 0.7496000 0.9841000 1.0000000 1.0000000 1.0000000 0.9317000 36.67 70.0 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 151819738 . G GGGAGGCA . PASS . . . . . . 36.87 70.0 15 369.01 7.27 73.33 0 80.00 0/1
chr1 151820298 rs6587624 G C . PASS 0.9879000 0.9986000 1.0000000 1.0000000 1.0000000 0.9966000 36.09 69.78 92 1000.00 0.00 100.00 0 100.00 1/1
chr1 151820324 rs6587625 T C . PASS 0.8752000 0.8674000 0.6815000 0.8330000 0.6258000 0.7780000 36.85 69.75 79 1000.00 0.00 100.00 0 100.00 1/1
chr1 151825991 rs7556386 G T . PASS 0.7421000 0.5620000 0.6567000 0.6859000 0.4243000 0.6266000 37.0 70.0 69 1000.00 0.00 100.00 0 100.00 1/1
chr1 151867560 rs3762427 G A . PASS 0.9047000 0.9092000 0.9504000 0.9175000 0.9356000 0.9231000 36.24 68.3 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 151881885 rs3748805 A C . PASS 0.8986000 0.9092000 0.9494000 0.9155000 0.9458000 0.9229000 36.39 70.0 98 1000.00 0.00 100.00 0 100.00 1/1
chr1 151952885 rs2999528 C T . PASS 0.3669000 0.6844000 0.6458000 0.5994000 0.3671000 0.5138000 36.74 70.0 78 1000.00 1.56 58.97 0 58.97 0/1
chr1 152005327 rs35135981 TA T . PASS 0.3654000 0.1470000 0.0010000 0.2634000 0.1268000 0.1947000 36.2 70.0 32 476.21 9.17 46.88 0 46.88 0/1
chr1 152009530 rs3811422 T C . PASS 0.7179000 0.9380000 0.8938000 0.9672000 0.9325000 0.8758000 36.0 70.0 24 942.98 0.00 100.00 0 100.00 1/1
chr1 152079823 rs1131473 C G . PASS 0.2806000 0.5850000 0.4960000 0.3688000 0.7229000 0.4702000 37.0 70.0 45 788.65 6.96 51.11 0 51.11 0/1
chr1 152079989 rs1131471 T G . PASS 0.5136000 0.6484000 0.5992000 0.4016000 0.7751000 0.5781000 37.0 70.0 80 1000.00 12.44 48.75 0 48.75 0/1
chr1 152081921 rs2496253 G C . PASS 0.4781000 0.6470000 0.5992000 0.4016000 0.7751000 0.5685000 35.67 70.0 53 895.63 13.14 50.94 0 50.94 0/1
chr1 152083325 rs11803731 A T . PASS 0.0045000 0.0937000 0.0010000 0.2286000 0.0634000 0.0727000 36.12 69.51 92 1000.00 14.32 44.57 0 44.57 0/1
chr1 152084039 rs6680692 G T . PASS 0.0015000 0.0072000 0.0020000 0.0209000 0.0000000 0.0055910 35.31 70.0 151 1000.00 4.57 47.02 0 47.02 0/1
chr1 152085505 rs2515663 A C . PASS 0.9614000 0.9957000 1.0000000 1.0000000 1.0000000 0.9892000 36.45 70.0 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 152128121 rs72696940 G A . PASS 0.0023000 0.0735000 0.0040000 0.1233000 0.0777000 0.0515000 36.52 69.67 263 1000.00 14.80 47.15 0 47.15 0/1
chr1 152185500 rs12726613 C G . PASS 0.2428000 0.4265000 0.6190000 0.1700000 0.4888000 0.3774000 34.82 70.0 17 347.67 17.11 64.71 0 64.71 0/1
chr1 152185750 rs12729662 G A . PASS 0.1172000 0.4150000 0.6181000 0.1700000 0.4898000 0.3427000 36.67 69.98 137 1000.00 5.44 80.29 0 80.29 0/1
chr1 152185762 rs41266112 C G . PASS 0.5287000 0.5576000 0.3859000 0.8300000 0.5112000 0.5611000 35.59 69.76 136 240.11 45.59 12.50 0 12.50 0/1
chr1 152185768 rs41266114 T G . PASS . . . . . . 37.0 69.73 137 177.59 44.28 10.95 0 10.95 0/1
chr1 152186099 rs144801487 C T . PASS 0.0038000 0.0159000 0.0020000 0.0537000 0.0072000 0.0157750 36.0 57.77 67 1000.00 21.77 71.64 0 71.64 0/1
chr1 152186141 rs41266128 C T . PASS . . . . . . 36.59 54.69 83 917.03 41.21 34.94 0 34.94 0/1
chr1 152186178 rs4845748 C T . PASS 0.3306000 0.3429000 0.3125000 0.6342000 0.4008000 0.4034000 36.4 52.75 91 517.03 54.51 21.98 0 21.98 0/1
chr1 152186222 rs4845424 T C . PASS 0.2685000 0.3285000 0.2569000 0.6561000 0.3057000 0.3596000 35.5 50.62 68 85.02 57.35 11.76 0 11.76 0/1
chr1 152186490 rs201463788 C T . PASS 0.1203000 0.2147000 0.2679000 0.0934000 0.2209000 0.1773000 35.5 58.0 30 199.39 13.33 26.67 0 26.67 0/1
chr1 152186699 . T A . PASS . . . . . . 36.66 48.3 664 864.79 22.55 10.54 0 10.54 0/1
chr1 152186766 rs4845747 G A . PASS . . . . . . 36.4 48.35 732 1000.00 14.99 21.86 0 21.99 0/1
chr1 152187183 rs138393387 C A . PASS . . . . . . 36.52 61.38 374 1000.00 3.89 26.74 0 26.74 0/1
chr1 152187276 rs199952550 C T . PASS . . . . . . 37.0 67.64 82 180.20 1.33 13.41 0 13.41 0/1
chr1 152187554 rs61814935 C T . PASS . . . . . . 36.31 50.86 465 1000.00 16.70 18.71 0 18.71 0/1
chr1 152187562 rs61814936 A C . PASS 0.8570000 0.9885000 1.0000000 1.0000000 1.0000000 0.9607000 36.68 49.07 456 1000.00 0.00 100.00 0 100.00 1/1
chr1 152187589 rs143684430 G A . PASS . . . . . . 36.18 43.71 702 1000.00 11.30 18.66 0 18.66 0/1
chr1 152187628 rs75639578 A G . PASS . . . . . . 36.56 46.13 1036 1000.00 10.36 15.93 0 15.93 0/1
chr1 152187810 rs145371085 G A . PASS . . . . . . 35.84 65.97 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 152187935 rs61814938 C T . PASS . . . . . . 37.0 53.89 145 1000.00 28.75 26.21 0 26.21 0/1
chr1 152187945 rs61814939 C T . PASS . . . . . . 36.79 54.7 163 1000.00 19.26 34.36 0 34.36 0/1
chr1 152188062 rs79940627 T C . PASS . . . . . . 36.48 56.46 332 1000.00 8.11 20.78 0 20.78 0/1
chr1 152188109 rs61814940 T A . PASS . . . . . . 36.57 57.06 378 1000.00 29.63 44.44 0 44.44 0/1
chr1 152188176 rs147618491 G A . PASS . . . . . . 36.85 60.84 514 1000.00 12.92 15.76 0 15.76 0/1
chr1 152188413 rs200760332 C T . PASS . . . . . . 36.82 66.6 645 812.75 6.15 10.39 0 10.39 0/1
chr1 152188463 rs61814941 G A . PASS . . . . . . 36.44 63.23 579 862.07 15.80 11.05 0 11.05 0/1
chr1 152188847 rs145667921 A G . PASS . . . . . . 36.59 42.55 166 667.22 22.85 17.47 0 17.47 0/1
chr1 152188920 rs61814942 C T . PASS . . . . . . 36.75 45.7 339 1000.00 0.57 28.32 0 28.32 0/1
chr1 152188998 rs80018286 C T . PASS . . . . . . 36.37 51.74 270 718.11 23.74 14.07 0 14.07 0/1
chr1 152189055 rs4845749 G C . PASS . . . . . . 36.76 53.84 99 1000.00 0.41 98.99 0 100.00 1/1
chr1 152190682 rs71625163 G A . PASS 0.1778000 0.4222000 0.6558000 0.1700000 0.4928000 0.3678000 37.0 23.0 13 95.48 0.00 30.77 0 30.77 0/1
chr1 152190720 rs7514457 C T . PASS 0.5166000 0.5432000 0.3423000 0.8062000 0.5061000 0.5413000 37.0 69.93 21 489.10 0.00 66.67 0 66.67 0/1
chr1 152190835 rs144383071 G A . PASS 0.0242000 0.3919000 0.6319000 0.1412000 0.4305000 0.3003000 36.76 54.54 115 1000.00 8.70 43.48 0 43.48 0/1
chr1 152190945 rs77376932 C T . PASS 0.0242000 0.3905000 0.6190000 0.1402000 0.4243000 0.2961000 36.88 64.96 213 1000.00 0.79 45.07 0 45.07 0/1
chr1 152191709 rs6662450 C G . PASS 0.4682000 0.5519000 0.3274000 0.8290000 0.5082000 0.5317000 36.29 70.0 153 1000.00 8.82 44.44 0 44.44 0/1
chr1 152191879 rs10788828 G A . PASS 0.5280000 0.5576000 0.3800000 0.8300000 0.5133000 0.5601000 35.88 69.95 108 1000.00 7.88 39.81 0 39.81 0/1
chr1 152192114 rs7520249 C T . PASS 0.5280000 0.5576000 0.3800000 0.8300000 0.5102000 0.5595000 36.58 69.71 224 1000.00 3.86 37.95 0 37.95 0/1
chr1 152192219 rs79513582 G C . PASS . . . . . . 36.14 68.36 125 159.93 27.77 11.20 0 11.20 0/1
chr1 152192293 rs7520375 C T . PASS 0.5272000 0.5576000 0.3313000 0.8300000 0.5082000 0.5491000 36.14 65.5 145 1000.00 1.26 38.62 0 38.62 0/1
chr1 152192555 rs41266134 T C . PASS 0.0242000 0.3905000 0.5962000 0.1412000 0.4274000 0.2923000 36.81 69.98 129 1000.00 3.63 48.06 0 48.06 0/1
chr1 152192631 rs6587647 C T . PASS 0.5287000 0.5576000 0.3800000 0.8300000 0.5112000 0.5599000 36.72 69.51 117 1000.00 6.12 36.75 0 36.75 0/1
chr1 152192687 rs6587648 T C . PASS 0.7905000 0.9841000 1.0000000 1.0000000 1.0000000 0.9425000 36.38 69.77 116 1000.00 0.00 100.00 0 100.00 1/1
chr1 152192825 rs6666097 C T . PASS 0.2073000 0.2795000 0.2917000 0.5855000 0.3875000 0.3454000 36.33 70.0 134 1000.00 5.14 53.73 0 53.73 0/1
chr1 152192978 rs6587649 T C . PASS 0.7905000 0.9841000 0.9990000 1.0000000 1.0000000 0.9423000 36.88 70.0 99 1000.00 0.00 100.00 0 100.00 1/1
chr1 152193052 rs6587650 A G . PASS 0.6891000 0.9784000 1.0000000 1.0000000 0.9990000 0.9147000 36.9 69.98 118 1000.00 0.00 100.00 0 100.00 1/1
chr1 152193121 rs6587651 G T . PASS 0.5287000 0.5576000 0.3304000 0.8300000 0.5082000 0.5493000 36.83 70.0 157 1000.00 2.31 43.95 0 43.95 0/1
chr1 152193286 rs7545406 G T . PASS 0.2088000 0.2795000 0.2917000 0.5855000 0.3875000 0.3458000 36.19 69.8 220 1000.00 0.75 40.45 0 40.45 0/1
chr1 152193291 rs6587652 G T . PASS 0.5295000 0.5576000 0.3800000 0.8300000 0.5112000 0.5601000 36.74 69.79 224 1000.00 1.24 40.62 0 40.62 0/1
chr1 152193544 rs7535536 A G . PASS 0.4690000 0.5519000 0.3274000 0.8290000 0.5082000 0.5319000 36.68 70.0 90 1000.00 6.08 42.22 0 42.22 0/1
chr1 152193547 rs6587653 G A . PASS 0.7905000 0.9841000 1.0000000 0.9990000 1.0000000 0.9423000 36.45 69.77 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 152193851 rs11204937 C T . PASS 0.4705000 0.5519000 0.3284000 0.8290000 0.5082000 0.5325000 36.73 70.0 87 1000.00 3.37 51.72 0 51.72 0/1
chr1 152193990 rs11204938 A G . PASS 0.4690000 0.5519000 0.3274000 0.8290000 0.5082000 0.5319000 36.11 70.0 47 929.85 5.67 57.45 0 57.45 0/1
chr1 152195579 rs74127901 G A . PASS 0.0817000 0.4150000 0.6091000 0.1680000 0.4877000 0.3307000 36.35 70.0 75 1000.00 17.87 49.33 0 49.33 0/1
chr1 152195728 rs34061715 AT A . PASS . . . . . . 35.82 70.0 69 1000.00 1.36 98.55 0 98.55 1/1
chr1 152195851 rs370014740,rs71582220 TAGTC T . PASS 0.4410000 0.5533000 0.3423000 0.8310000 0.5092000 0.5284000 37.0 67.14 18 196.18 22.22 38.89 0 38.89 0/1
chr1 152276149 rs77422831 C T . PASS 0.0113000 0.3919000 0.5804000 0.1421000 0.4315000 0.2869000 36.45 69.39 218 1000.00 1.83 50.00 0 50.00 0/1
chr1 152276377 rs139284720 C G . PASS . . . . . . 36.52 49.28 105 679.58 28.19 23.81 0 23.81 0/1
chr1 152276459 rs75448155 C T . PASS . . . . . . 36.38 54.22 217 1000.00 4.59 26.73 0 26.73 0/1
chr1 152276583 rs12083389 C G . PASS 0.4796000 0.3213000 0.4732000 0.1233000 0.3599000 0.3614000 37.0 65.31 108 724.33 9.26 24.07 0 24.07 0/1
chr1 152276598 rs12742178 G A . PASS 0.0227000 0.0965000 0.1984000 0.0199000 0.1299000 0.0887000 36.5 61.33 92 681.10 3.99 26.09 0 26.09 0/1
chr1 152276626 rs3126075 G C . PASS 0.6074000 0.4395000 0.6498000 0.1561000 0.4836000 0.4778000 37.0 60.17 88 951.62 2.42 34.09 0 34.09 0/1
chr1 152276699 rs12728605 A G . PASS . . . . . . 36.7 61.1 160 1000.00 30.00 25.00 0 25.00 0/1
chr1 152276772 rs72697000 C A . PASS 0.0113000 0.3919000 0.5853000 0.1421000 0.4448000 0.2905000 36.36 68.38 132 1000.00 5.63 42.42 0 42.42 0/1
chr1 152276871 rs3126066 A G . PASS 0.5204000 0.4395000 0.6448000 0.1471000 0.4581000 0.4471000 36.79 69.3 114 1000.00 0.00 50.00 0 50.00 0/1
chr1 152276889 rs3126067 A G . PASS 0.7912000 0.4553000 0.6498000 0.1511000 0.4581000 0.5226000 36.28 69.36 142 1000.00 4.31 47.18 0 47.18 0/1
chr1 152277055 rs2065955 C G . PASS 0.7882000 0.4481000 0.6349000 0.1481000 0.4427000 0.5142000 36.59 68.78 216 1000.00 1.56 40.28 0 40.28 0/1
chr1 152277168 rs3091276 A G . PASS 0.5567000 0.4539000 0.6587000 0.1730000 0.4939000 0.4736000 36.84 68.37 182 1000.00 0.43 41.76 0 41.76 0/1
chr1 152277345 rs2065956 C T . PASS 0.0113000 0.3905000 0.5823000 0.1421000 0.4335000 0.2875000 37.0 69.37 158 1000.00 1.71 43.04 0 43.04 0/1
chr1 152277396 rs6681433 T C . PASS 0.1150000 0.4193000 0.6062000 0.1710000 0.4928000 0.3411000 36.05 69.47 155 1000.00 1.99 49.03 0 49.03 0/1
chr1 152277717 rs9436066 C A . PASS 0.5212000 0.4524000 0.6835000 0.1730000 0.4969000 0.4696000 36.55 66.89 96 1000.00 12.03 55.21 0 55.21 0/1
chr1 152277822 rs3126069 T C . PASS 0.0378000 0.2709000 0.4831000 0.0944000 0.3078000 0.2238000 36.08 69.46 91 224.64 48.35 14.29 0 14.29 0/1
chr1 152277826 rs2065957 A C . PASS 0.4894000 0.3674000 0.5883000 0.1123000 0.3712000 0.3936000 35.15 69.62 95 196.43 48.58 13.68 0 13.68 0/1
chr1 152278555 rs80221306 T C . PASS . . . . . . 37.0 64.67 90 949.74 0.00 33.33 0 33.33 0/1
chr1 152278689 rs57672167 C A . PASS 0.3147000 0.4337000 0.6101000 0.1710000 0.4918000 0.3964000 36.62 64.76 174 1000.00 0.36 72.99 0 72.99 0/1
chr1 152278814 rs2184952 C T . PASS . . . . . . 37.0 61.27 289 1000.00 4.15 17.65 0 17.65 0/1
chr1 152278856 rs11582087 T G . PASS . . . . . . 36.82 68.26 237 1000.00 1.27 28.69 0 28.69 0/1
chr1 152279019 rs57670307 G A . PASS . . . . . . 36.56 59.01 341 1000.00 3.56 23.46 0 23.75 0/1
chr1 152279406 rs192116923 T G . PASS 0.0507000 0.1700000 0.2123000 0.3628000 0.2055000 0.1927000 35.0 69.67 15 156.84 26.67 40.00 0 40.00 0/1
chr1 152279729 rs3126072 C T . PASS 0.5658000 0.4510000 0.6548000 0.1730000 0.4939000 0.4748000 36.53 69.32 164 1000.00 1.41 46.34 0 46.34 0/1
chr1 152279841 rs3126074 G C . PASS 0.5189000 0.4510000 0.6548000 0.1720000 0.4939000 0.4623000 36.81 68.9 128 1000.00 1.44 49.22 0 49.22 0/1
chr1 152279920 rs55650366 A G . PASS 0.1203000 0.4207000 0.6071000 0.1710000 0.4908000 0.3425000 36.42 68.4 149 1000.00 0.53 55.70 0 55.70 0/1
chr1 152280032 rs71625200 T C . PASS 0.1218000 0.4222000 0.6071000 0.1710000 0.4908000 0.3431000 36.37 68.93 236 1000.00 4.24 56.78 0 56.78 0/1
chr1 152280170 rs71625201 C G . PASS 0.1135000 0.4092000 0.5665000 0.1690000 0.4908000 0.3305000 36.81 65.97 105 1000.00 12.26 59.05 0 59.05 0/1
chr1 152280265 rs71625202 C G . PASS . . . . . . 37.0 64.56 66 516.58 72.73 27.27 0 27.27 0/1
chr1 152280471 rs78179835 C G . PASS . . . . . . 36.08 58.87 182 1000.00 11.72 21.43 0 21.43 0/1
chr1 152280559 rs150122015 T C . PASS . . . . . . 37.0 51.39 154 255.87 21.65 11.69 0 11.69 0/1
chr1 152280573 rs76471961 C A . PASS 0.0136000 0.0533000 0.1200000 0.0258000 0.0593000 0.0491000 37.0 51.82 153 212.96 27.45 11.11 0 11.11 0/1
chr1 152280736 rs78974621 T C . PASS . . . . . . 37.0 69.11 96 54.51 45.14 9.38 0 9.38 0/1
chr1 152280759 rs2338554 A G . PASS 0.4720000 0.3501000 0.4454000 0.1531000 0.3773000 0.3672000 37.0 69.07 88 287.46 31.49 15.91 0 15.91 0/1
chr1 152280782 rs2184953 A G . PASS 0.7897000 0.4683000 0.6607000 0.1759000 0.5020000 0.5397000 36.79 69.55 93 1000.00 2.82 62.37 0 62.37 0/1
chr1 152280788 rs66954353 T G . PASS . . . . . . 37.0 68.71 99 375.51 24.36 17.17 0 17.17 0/1
chr1 152280864 rs2184954 A G . PASS 0.5204000 0.4524000 0.6577000 0.1720000 0.4949000 0.4637000 36.58 67.89 169 1000.00 2.09 68.05 0 68.05 0/1
chr1 152280900 rs74129452 T G . PASS 0.3843000 0.3487000 0.4444000 0.1541000 0.3773000 0.3438000 36.59 67.67 193 1000.00 1.20 30.05 0 30.05 0/1
chr1 152281006 . TAA TGG . PASS . . . . . . 36.76 69.92 182 1000.00 0.09 28.02 0 29.67 0/1
chr1 152281039 rs7522925 G A . PASS . . . . . . 36.23 70.0 171 1000.00 5.05 27.49 0 27.49 0/1
chr1 152281228 rs7546186 C G . PASS . . . . . . 36.81 68.03 224 1000.00 2.68 28.57 0 28.57 0/1
chr1 152281290 rs80353812 A G . PASS 0.3850000 0.3343000 0.4355000 0.1292000 0.3405000 0.3281000 36.81 65.98 212 1000.00 2.42 30.19 0 30.19 0/1
chr1 152281304 rs7512857 A C . PASS . . . . . . 36.83 65.94 230 1000.00 6.46 30.43 0 30.43 0/1
chr1 152281479 rs3126079 G T . PASS 0.7897000 0.4683000 0.6607000 0.1759000 0.4939000 0.5381000 36.45 69.61 231 1000.00 1.73 66.67 0 66.67 0/1
chr1 152281523 rs80059102 A C . PASS . . . . . . 36.8 68.19 205 1000.00 22.98 28.78 0 28.78 0/1
chr1 152281534 rs113544881 A T . PASS 0.3336000 0.3285000 0.4335000 0.1302000 0.3405000 0.3135000 36.77 67.92 219 1000.00 19.88 23.74 0 23.74 0/1
chr1 152281690 rs12407748 C T . PASS 0.0113000 0.3905000 0.5843000 0.1421000 0.4315000 0.2875000 36.36 69.89 236 1000.00 5.50 47.88 0 47.88 0/1
chr1 152281948 rs12405241 G A . PASS 0.0113000 0.3905000 0.5843000 0.1421000 0.4315000 0.2875000 36.02 69.73 218 1000.00 1.05 39.45 0 39.45 0/1
chr1 152282267 rs12405278 G A . PASS 0.0121000 0.3905000 0.5843000 0.1421000 0.4315000 0.2877000 37.0 69.98 124 1000.00 3.67 46.77 0 46.77 0/1
chr1 152282311 rs12407807 C T . PASS 0.0461000 0.3905000 0.5843000 0.1421000 0.4315000 0.2967000 36.65 69.96 135 1000.00 0.70 50.37 0 50.37 0/1
chr1 152282917 rs11204978 G T . PASS 0.0113000 0.3905000 0.5823000 0.1421000 0.4315000 0.2871000 36.58 69.96 136 1000.00 3.12 41.91 0 41.91 0/1
chr1 152283236 rs11581433 T C . PASS 0.1218000 0.4236000 0.6062000 0.1710000 0.4908000 0.3431000 36.66 66.86 169 1000.00 7.78 41.42 0 41.42 0/1
chr1 152283283 rs11586631 C T . PASS 0.0144000 0.3890000 0.5823000 0.1421000 0.4315000 0.2877000 36.52 67.63 171 1000.00 2.57 43.86 0 43.86 0/1
chr1 152283862 rs58001094 G C . PASS 0.7806000 0.4611000 0.6577000 0.1759000 0.4939000 0.5341000 36.63 68.76 216 1000.00 5.56 44.44 0 44.91 0/1
chr1 152283975 rs66831674 A G . PASS 0.5204000 0.4524000 0.6558000 0.1720000 0.4939000 0.4631000 36.39 68.09 148 1000.00 3.80 53.38 0 53.38 0/1
chr1 152284854 rs3120653 A G . PASS 0.5567000 0.4553000 0.6558000 0.1730000 0.4939000 0.4732000 36.67 69.56 153 1000.00 8.06 47.71 0 47.71 0/1
chr1 152285099 rs74129461 C T . PASS 0.0681000 0.4150000 0.6062000 0.1710000 0.4908000 0.3277000 36.34 69.96 182 1000.00 1.10 50.00 0 50.00 0/1
chr1 152285930 rs11584340 G A . PASS 0.1286000 0.4222000 0.6062000 0.1710000 0.4908000 0.3446000 36.44 69.9 173 1000.00 6.04 61.85 0 61.85 0/1
chr1 152286002 rs2011331 T C . PASS 0.5204000 0.4539000 0.6587000 0.1730000 0.4939000 0.4641000 36.81 69.98 111 1000.00 7.12 56.76 0 56.76 0/1
chr1 152286032 rs11588170 C T . PASS 0.0113000 0.3905000 0.5823000 0.1421000 0.4315000 0.2871000 36.33 70.0 96 1000.00 10.19 56.25 0 56.25 0/1
chr1 152286367 rs41267154 C A . PASS 0.1150000 0.4193000 0.6062000 0.1710000 0.4908000 0.3407000 36.78 70.0 109 1000.00 0.88 49.54 0 49.54 0/1
chr1 152323132 rs12568784 G T . PASS 0.2905000 0.4049000 0.4554000 0.1421000 0.3272000 0.3169000 36.57 70.0 104 1000.00 9.34 53.85 0 53.85 0/1
chr1 152325732 rs12022217 G A . PASS 0.2905000 0.4049000 0.4534000 0.1421000 0.3272000 0.3165000 35.74 69.88 144 1000.00 2.34 39.58 0 39.58 0/1
chr1 152327469 rs76514540 C T . PASS 0.0159000 0.3804000 0.4534000 0.1372000 0.3272000 0.2396000 35.86 69.13 239 1000.00 28.39 26.36 0 26.36 0/1
chr1 152327502 rs138997916 A G . PASS 0.0129000 0.2939000 0.4018000 0.1044000 0.2495000 0.1947000 35.56 68.76 175 449.06 43.43 14.29 0 14.29 0/1
chr1 152328411 rs6679449 A G . PASS 0.7988000 0.4553000 0.5079000 0.1690000 0.3742000 0.4832000 36.84 68.47 232 1000.00 13.25 32.76 0 32.76 0/1
chr1 152329435 rs2282303 C T . PASS 0.3631000 0.4164000 0.5020000 0.1441000 0.3313000 0.3482000 35.8 70.0 64 991.98 12.92 46.88 0 46.88 0/1
chr1 152331240 rs3818831 G A . PASS 0.4493000 0.4222000 0.5010000 0.1461000 0.3303000 0.3718000 37.0 70.0 70 1000.00 10.00 57.14 0 57.14 0/1
chr1 152372035 rs7515448 A G . PASS 0.6437000 0.4510000 0.4960000 0.1700000 0.3384000 0.4325000 37.0 70.0 10 62.74 13.33 30.00 0 30.00 0/1
chr1 152382062 rs10888486 C T . PASS 0.0189000 0.3689000 0.4296000 0.1431000 0.3231000 0.2344000 36.29 70.0 45 530.17 8.10 37.78 0 37.78 0/1
chr1 152382120 rs3829868 C T . PASS 0.0635000 0.3689000 0.4315000 0.1441000 0.3231000 0.2468000 36.48 70.0 62 729.62 4.35 37.10 0 37.10 0/1
chr1 152384498 rs3215709 G GT . PASS . . . . . . 37.0 70.0 11 408.41 0.00 100.00 0 100.00 1/1
chr1 152384759 rs7521839 A G . PASS 0.2791000 0.3890000 0.4325000 0.1491000 0.3241000 0.3079000 37.0 69.29 43 1000.00 0.50 65.12 0 65.12 0/1
chr1 152384833 rs1923492 T C . PASS 0.7829000 0.8862000 0.9802000 0.8181000 0.9509000 0.8768000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 152484129 rs2105117 G A . PASS 0.3132000 0.5346000 0.6111000 0.6223000 0.6002000 0.5220000 36.4 70.0 100 1000.00 0.00 100.00 0 100.00 1/1
chr1 152487979 rs2282296 C T . PASS 0.1611000 0.5245000 0.6081000 0.6213000 0.6002000 0.4796000 36.61 70.0 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 152488063 rs1053588 C T . PASS 0.5151000 0.5476000 0.6478000 0.6213000 0.6043000 0.5851000 35.94 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 152552285 rs512208 C A . PASS 0.1384000 0.2853000 0.3264000 0.3827000 0.2975000 0.2768000 36.02 68.72 169 1000.00 2.96 50.89 0 50.89 0/1
chr1 152590187 rs6677595 C T . PASS 0.3714000 0.6225000 0.6379000 0.6412000 0.6217000 0.5629000 36.8 70.0 102 1000.00 0.59 58.82 0 58.82 0/1
chr1 152636843 rs9793541 A T . PASS 0.0159000 0.1585000 0.0298000 0.3032000 0.1616000 0.1246000 35.45 69.68 317 1000.00 4.87 39.12 0 39.12 0/1
chr1 152681543 rs1332496 T C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 0.9990000 0.9998000 35.74 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 152681680 rs6143428,rs11269814 C CAGCTCTGGGGGCTGCTGT . PASS 0.9758000 0.8530000 0.6855000 0.7177000 0.7301000 0.8005000 36.67 70.0 103 1000.00 0.00 100.00 0 100.00 1/1
chr1 152691943 rs1332499 G A . PASS 0.5461000 0.3804000 0.1716000 0.3608000 0.2321000 0.3492000 37.0 70.0 31 417.23 21.34 41.94 0 41.94 0/1
chr1 152692074 rs1332500 G C . PASS 0.5461000 0.3804000 0.1716000 0.3608000 0.2321000 0.3492000 37.0 70.0 109 1000.00 0.62 43.12 0 43.12 0/1
chr1 152692472 rs873775 A C . PASS 0.5461000 0.3804000 0.1716000 0.3608000 0.2321000 0.3492000 36.77 70.0 119 1000.00 13.80 43.70 0 43.70 0/1
chr1 152692588 rs944682 A G . PASS 0.5461000 0.3804000 0.1716000 0.3608000 0.2321000 0.3492000 37.0 70.0 58 1000.00 3.45 58.62 0 58.62 0/1
chr1 152692781 rs3814350 G T . PASS 0.5461000 0.3804000 0.1716000 0.3608000 0.2321000 0.3492000 37.0 70.0 41 591.84 10.84 43.90 0 43.90 0/1
chr1 152692803 rs41268476 A C . PASS 0.0166000 0.0447000 0.0169000 0.0517000 0.0440000 0.0329000 37.0 70.0 26 511.68 15.90 57.69 0 57.69 0/1
chr1 152710165 rs11588950 G T . PASS 0.3275000 0.2565000 0.1042000 0.3917000 0.2403000 0.2686000 37.0 68.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 152732436 rs4845480 G C . PASS 0.5787000 0.4914000 0.4187000 0.5159000 0.4182000 0.4904000 36.49 70.0 71 1000.00 0.00 100.00 0 100.00 1/1
chr1 152733301 rs4329520 T A . PASS 0.5787000 0.4914000 0.4177000 0.5159000 0.4182000 0.4902000 36.58 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 152759678 rs1034109 C T . PASS 0.7648000 0.5058000 0.4087000 0.5000000 0.4192000 0.5365000 37.0 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 152759950 rs11205106 A G . PASS 0.7625000 0.5058000 0.4097000 0.5000000 0.4172000 0.5357000 36.58 68.81 258 1000.00 0.00 100.00 0 100.00 1/1
chr1 152777465 rs1048535 A G . PASS 0.1657000 0.2262000 0.0347000 0.3608000 0.1646000 0.1867000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 152777868 rs36107483 A G . PASS 0.1672000 0.2262000 0.0347000 0.3608000 0.1636000 0.1869000 35.79 68.18 169 1000.00 0.00 100.00 0 100.00 1/1
chr1 152777964 rs17624493 G A . PASS 0.0703000 0.2176000 0.0347000 0.3588000 0.1636000 0.1597000 36.68 69.86 151 1000.00 0.00 100.00 0 100.00 1/1
chr1 152778118 rs35436039 G A . PASS 0.2973000 0.2565000 0.0774000 0.3917000 0.2577000 0.2586000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 152785170 rs56056379 G A . PASS 0.0000000 0.0303000 0.0000000 0.0408000 0.0092000 0.0141770 36.59 68.64 189 1000.00 2.10 61.38 0 61.38 0/1
chr1 152882952 rs11807064 G C . PASS . . . . . . 35.48 69.93 309 1000.00 3.71 22.98 0 22.98 0/1
chr1 152882979 rs17855670 C T . PASS . . . . . . 35.57 69.82 367 1000.00 7.00 40.87 0 41.14 0/1
chr1 152882980 . CAC CTG . PASS . . . . . . 36.47 69.75 345 1000.00 9.04 42.03 0 42.61 0/1
chr1 152883056 rs45609438 A G . PASS . . . . . . 36.52 69.88 255 232.28 8.31 9.80 0 9.80 0/1
chr1 152908814 rs58298199 A C . PASS 0.4735000 0.4452000 0.6438000 0.4821000 0.4724000 0.5054000 37.0 70.0 88 1000.00 2.27 52.27 0 52.27 0/1
chr1 152944594 rs3170863 C T . PASS 0.8306000 0.4986000 0.6319000 0.5656000 0.4918000 0.6252000 36.0 70.0 72 729.28 5.56 33.33 0 33.33 0/1
chr1 152957832 rs1611762 C A . PASS 0.4523000 0.4395000 0.5972000 0.5348000 0.4990000 0.5054000 36.14 69.04 153 1000.00 2.92 36.60 0 36.60 0/1
chr1 152957887 rs1611764 G A . PASS 0.6278000 0.4524000 0.6319000 0.5348000 0.5020000 0.5611000 36.82 68.97 185 1000.00 1.47 36.22 0 36.22 0/1
chr1 152975495 rs2075739 G A . PASS 0.5000000 0.4337000 0.6319000 0.5328000 0.5051000 0.5250000 36.08 70.0 26 420.27 7.69 50.00 0 50.00 0/1
chr1 152975715 rs28989168 C T . PASS 0.0015000 0.0000000 0.0000000 0.0000000 0.0000000 0.0003994 36.23 69.15 258 1000.00 2.45 24.03 0 24.03 0/1
chr1 152975739 rs17851565 T A . PASS . . . . . . 35.57 68.74 274 779.59 23.76 14.60 0 15.33 0/1
chr1 152975763 rs1977734 C A . PASS 0.5000000 0.4323000 0.6319000 0.5318000 0.5051000 0.5246000 35.89 69.44 298 1000.00 3.09 32.55 0 36.24 0/1
chr1 152975829 rs1970328 A G . PASS 0.5000000 0.4337000 0.6319000 0.5328000 0.5051000 0.5250000 36.65 69.83 268 1000.00 0.88 51.87 0 51.87 0/1
chr1 152975941 rs1055935 C G . PASS 0.7133000 0.4496000 0.6319000 0.5328000 0.5051000 0.5835000 36.68 70.0 85 1000.00 14.18 43.53 0 43.53 0/1
chr1 153004778 rs3820141 C T . PASS 0.4402000 0.4251000 0.5913000 0.5099000 0.4990000 0.4940000 37.0 70.0 20 74.41 40.00 20.00 0 20.00 0/1
chr1 153004809 rs3181787 T C . PASS 0.4402000 0.4251000 0.5913000 0.5099000 0.4990000 0.4940000 37.0 70.0 53 392.79 32.61 26.42 0 26.42 0/1
chr1 153004848 rs3795381 T C . PASS 0.4402000 0.4251000 0.5913000 0.5099000 0.4990000 0.4940000 37.0 69.95 103 1000.00 17.67 38.83 0 38.83 0/1
chr1 153004853 rs3795382 C T . PASS 0.4402000 0.4251000 0.5913000 0.5099000 0.4990000 0.4940000 37.0 69.93 120 1000.00 11.67 37.50 0 37.50 0/1
chr1 153004983 rs12195 C T . PASS 0.4410000 0.4265000 0.5923000 0.5179000 0.5061000 0.4976000 36.29 68.76 133 1000.00 3.56 51.13 0 51.13 0/1
chr1 153005156 rs2711 C T . PASS 0.4402000 0.4251000 0.5913000 0.5099000 0.4990000 0.4940000 37.0 70.0 24 438.30 9.62 54.17 0 54.17 0/1
chr1 153029137 rs3737864 C T . PASS 0.0983000 0.2233000 0.1151000 0.4384000 0.2352000 0.2141000 37.0 64.6 32 288.91 12.50 31.25 0 31.25 0/1
chr1 153066262 rs1933388 T C . PASS . . . . . . 37.0 70.0 27 95.11 42.96 18.52 0 18.52 0/1
chr1 153122310 rs510277 G A . PASS 0.2080000 0.4294000 0.5149000 0.5517000 0.5000000 0.4265000 35.0 70.0 27 363.49 16.67 44.44 0 44.44 0/1
chr1 153122620 rs513555 T C . PASS 0.4682000 0.4957000 0.6091000 0.5537000 0.5000000 0.5238000 37.0 70.0 30 336.71 14.55 36.67 0 36.67 0/1
chr1 153198457 rs1410862 A C . PASS 0.0507000 0.1571000 0.0685000 0.2793000 0.1564000 0.1356000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 153233510 rs6661601 A G . PASS 0.0908000 0.2810000 0.0655000 0.3419000 0.1912000 0.1821000 36.82 70.0 233 1000.00 8.38 51.93 0 56.22 0/1
chr1 153233991 rs11272549,rs11275959 A ACTCTGGCGGCGG . PASS 0.6664000 0.7954000 0.4563000 0.7147000 0.6493000 0.6484000 36.64 70.0 197 1000.00 2.25 39.09 0 40.10 0/1
chr1 153270362 rs2771110 C G . PASS 0.5658000 0.4841000 0.7282000 0.3598000 0.5429000 0.5413000 37.0 70.0 26 177.52 6.59 26.92 0 26.92 0/1
chr1 153271524 rs821431 C T . PASS 0.5719000 0.5216000 0.7083000 0.4016000 0.5685000 0.5575000 36.33 70.0 18 704.37 0.00 100.00 0 100.00 1/1
chr1 153277423 rs843971 C T . PASS 0.3850000 0.4553000 0.5833000 0.3996000 0.5501000 0.4698000 36.29 70.0 54 1000.00 10.24 62.96 0 62.96 0/1
chr1 153279462 rs66966700,rs377019962 TAAG T . PASS 0.6997000 0.8213000 0.7857000 0.8628000 0.8221000 0.7905000 36.4 70.0 29 688.07 5.86 68.97 0 68.97 0/1
chr1 153279696 rs55991125 C T . PASS 0.0045000 0.0303000 0.0000000 0.0398000 0.0266000 0.0185700 36.55 70.0 141 1000.00 11.99 37.59 0 37.59 0/1
chr1 153283004 rs821423 C T . PASS 0.8404000 0.8732000 0.8036000 0.8658000 0.8476000 0.8440000 37.0 70.0 18 331.05 17.78 55.56 0 55.56 0/1
chr1 153313044 rs12063091 C T . PASS 0.1536000 0.0389000 0.0000000 0.0398000 0.0256000 0.0589000 36.66 70.0 58 1000.00 10.74 60.34 0 60.34 0/1
chr1 153314153 rs3006448 C A . PASS 0.7466000 0.8660000 0.9058000 0.8767000 0.8650000 0.8444000 36.71 70.0 101 1000.00 0.39 40.59 0 40.59 0/1
chr1 153314347 rs3006449 C T . PASS 0.7027000 0.8588000 0.7411000 0.8728000 0.8476000 0.7945000 37.0 70.0 11 143.27 14.55 45.45 0 45.45 0/1
chr1 153315467 rs5777858 T TAAG . PASS 0.9879000 0.9135000 0.9058000 0.9165000 0.8906000 0.9277000 36.64 70.0 11 404.41 0.00 100.00 0 100.00 1/1
chr1 153315579 rs3014863 A G . PASS 0.9864000 0.9135000 0.9058000 0.9165000 0.8896000 0.9271000 36.4 70.0 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 153320334 rs3006457 T C . PASS 0.7451000 0.8660000 0.9058000 0.8767000 0.8630000 0.8436000 36.33 70.0 30 617.09 2.22 60.00 0 60.00 0/1
chr1 153320372 rs3006458 T G . PASS 0.7027000 0.8588000 0.7411000 0.8728000 0.8456000 0.7941000 36.65 70.0 57 1000.00 1.75 59.65 0 59.65 0/1
chr1 153320401 rs12096209 G A . PASS 0.2247000 0.0476000 0.0000000 0.0398000 0.0266000 0.0791000 37.0 70.0 61 1000.00 4.92 49.18 0 49.18 0/1
chr1 153362788 rs41264638 T C . PASS 0.0038000 0.1571000 0.0069000 0.2704000 0.0654000 0.0913000 35.8 70.0 18 319.04 15.56 55.56 0 55.56 0/1
chr1 153390626 rs55985140 G A . PASS 0.0015000 0.0144000 0.0000000 0.0348000 0.0061000 0.0105830 36.08 69.5 169 1000.00 1.78 46.15 0 46.15 0/1
chr1 153410822 rs10888561 C A . PASS 0.5000000 0.7061000 0.6042000 0.7376000 0.5869000 0.6142000 35.74 70.0 51 579.50 25.80 37.25 0 37.25 0/1
chr1 153412392 rs3006428 T G . PASS 0.9599000 0.8703000 0.7649000 0.8310000 0.6718000 0.8261000 36.58 69.74 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 153430249 rs35971850 TG T . PASS 0.0106000 0.3617000 0.3988000 0.2594000 0.3507000 0.2538000 36.79 69.93 39 1000.00 2.30 74.36 0 74.36 0/1
chr1 153431406 rs3014837 C G . PASS 0.9879000 0.9856000 1.0000000 0.9573000 0.9857000 0.9834000 36.65 69.29 138 1000.00 0.00 100.00 0 100.00 1/1
chr1 153431435 rs72708760 T G . PASS 0.0000000 0.0014000 0.0000000 0.0070000 0.0000000 0.0015974 36.09 69.49 117 1000.00 0.74 45.30 0 45.30 0/1
chr1 153433068 rs12217109 G A . PASS 0.1566000 0.1369000 0.1587000 0.0895000 0.0849000 0.1268000 36.52 69.08 36 891.42 4.00 69.44 0 69.44 0/1
chr1 153509890 rs3795393 T C . PASS 0.0045000 0.1254000 0.2440000 0.0805000 0.1186000 0.1070000 36.11 70.0 55 905.76 16.16 49.09 0 49.09 0/1
chr1 153587308 rs11548104 C T . PASS 0.7700000 0.7032000 0.6776000 0.5149000 0.6227000 0.6621000 35.5 70.0 27 530.57 1.85 59.26 0 59.26 0/1
chr1 153588208 rs9792963 G A . PASS 0.0772000 0.5980000 0.6726000 0.4612000 0.4663000 0.4223000 37.0 70.0 16 211.76 7.14 43.75 0 43.75 0/1
chr1 153588279 rs9792967 G A . PASS 0.0772000 0.5980000 0.6726000 0.4612000 0.4663000 0.4223000 36.67 70.0 65 1000.00 4.62 55.38 0 55.38 0/1
chr1 153588340 rs11548103 C T . PASS 0.2300000 0.2983000 0.3224000 0.4851000 0.3753000 0.3377000 36.25 70.0 78 1000.00 8.49 41.03 0 41.03 0/1
chr1 153602861 rs3790411 G C . PASS 0.5053000 0.7003000 0.6964000 0.5268000 0.6728000 0.6078000 37.0 70.0 19 282.13 9.36 47.37 0 47.37 0/1
chr1 153636432 rs10598064,rs111228460,rs78824938 TTAC T . PASS 0.4697000 0.1268000 0.0764000 0.1392000 0.1513000 0.2145000 37.0 70.0 16 369.28 22.73 68.75 0 68.75 0/1
chr1 153658480 rs11264236 G A . PASS 0.0091000 0.1009000 0.1647000 0.2972000 0.1677000 0.1420000 36.2 70.0 15 579.06 0.00 100.00 0 100.00 1/1
chr1 153662544 . ATCTC A . PASS . . . . . . 33.75 70.0 21 196.88 1.19 38.10 0 38.10 0/1
chr1 153742610 rs12120312 G T . PASS . . . . . . 37.0 70.0 16 127.09 25.00 31.25 0 37.50 0/1
chr1 153743234 rs6675978 T C . PASS 0.2995000 0.3573000 0.7004000 0.4264000 0.4458000 0.4423000 36.68 69.47 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 153743289 rs12068256 C G . PASS 0.4629000 0.1844000 0.4127000 0.2942000 0.2321000 0.3353000 35.8 70.0 20 771.75 0.00 100.00 0 100.00 1/1
chr1 153750207 rs139720425 C CCTT . PASS 0.3759000 0.3055000 0.5198000 0.3678000 0.2403000 0.3670000 36.0 70.0 36 662.98 13.33 55.56 0 55.56 0/1
chr1 153750214 rs374974027,rs3841381 TC T . PASS 0.4115000 0.3213000 0.5417000 0.3787000 0.2699000 0.3910000 35.52 70.0 40 844.81 13.00 62.50 0 62.50 0/1
chr1 153790495 rs72694221 A T . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 70.0 25 598.22 7.06 68.00 0 68.00 0/1
chr1 153790501 rs4363451 C T . PASS 0.0847000 0.4049000 0.2847000 0.2893000 0.3323000 0.2588000 35.11 70.0 30 634.85 3.51 63.33 0 63.33 0/1
chr1 153824852 rs16835630 T C . PASS 0.0015000 0.0058000 0.0337000 0.0109000 0.0072000 0.0115820 37.0 70.0 15 214.77 20.95 46.67 0 46.67 0/1
chr1 153825208 rs4540690 A G . PASS 0.3457000 0.3285000 0.0685000 0.5239000 0.3323000 0.3207000 37.0 70.0 39 518.47 22.44 41.03 0 41.03 0/1
chr1 153825404 rs4845576 C T . PASS 0.0174000 0.3991000 0.2837000 0.2883000 0.3272000 0.2388000 37.0 70.0 10 146.28 60.00 50.00 0 50.00 0/1
chr1 153900067 . TTG T . PASS . . . . . . 37.0 69.0 14 208.22 14.29 50.00 0 50.00 0/1
chr1 153900073 . GT G . PASS . . . . . . 37.0 67.67 11 50.17 60.61 27.27 0 27.27 0/1
chr1 153906397 rs11264621 A G . PASS 0.6225000 0.6700000 0.9315000 0.4861000 0.6677000 0.6727000 37.0 70.0 18 289.28 22.22 50.00 0 50.00 0/1
chr1 153907278 rs3835302,rs71794006 CCTGCTGCTG C . PASS . . . . . . 36.17 70.0 185 1000.00 2.33 37.30 0 44.32 0/1
chr1 153909069 rs1043608 G C . PASS 0.0991000 0.4063000 0.2847000 0.2913000 0.3303000 0.2628000 37.0 69.64 111 1000.00 6.40 50.45 0 50.45 0/1
chr1 153913699 rs1110165 T G . PASS 0.1150000 0.4092000 0.2837000 0.2922000 0.3303000 0.2674000 35.86 69.05 73 596.81 19.70 28.77 0 28.77 0/1
chr1 153913770 rs2252508 A G . PASS 0.7443000 0.6816000 0.9315000 0.4791000 0.6677000 0.7051000 36.6 70.0 69 1000.00 8.12 43.48 0 43.48 0/1
chr1 153920564 rs10559 A G . PASS 0.0991000 0.4063000 0.2847000 0.2903000 0.3303000 0.2626000 35.34 70.0 118 1000.00 9.83 55.08 0 55.08 0/1
chr1 153926078 rs11264680 T C . PASS 0.0991000 0.4078000 0.2847000 0.2913000 0.3303000 0.2630000 36.6 70.0 57 1000.00 2.81 52.63 0 52.63 0/1
chr1 153927270 rs10908558 T C . PASS 0.0893000 0.4049000 0.2847000 0.2903000 0.3292000 0.2596000 37.0 70.0 14 176.01 9.52 42.86 0 42.86 0/1
chr1 153941514 rs11264743 C T . PASS 0.0832000 0.4107000 0.2837000 0.2853000 0.3262000 0.2570000 36.73 70.0 79 1000.00 5.81 55.70 0 55.70 0/1
chr1 153954674 rs10908578 T C . PASS 0.6558000 0.6801000 0.9296000 0.4891000 0.6759000 0.6847000 37.0 70.0 39 727.33 2.20 53.85 0 53.85 0/1
chr1 153954778 rs371625659 AAC A . PASS 0.2466000 0.3156000 0.2103000 0.2356000 0.3200000 0.2610000 33.9 70.0 40 165.77 20.00 25.00 0 25.00 0/1
chr1 153958732 . G A . PASS . . . . . . 37.0 70.0 28 50.34 28.57 14.29 0 14.29 0/1
chr1 153963995 rs140257179 A AAG . PASS 0.1513000 0.4236000 0.2817000 0.2972000 0.3436000 0.2821000 37.0 70.0 36 626.95 4.44 55.56 0 55.56 0/1
chr1 153994647 rs11264875 C T . PASS 0.1407000 0.4035000 0.2817000 0.2793000 0.3292000 0.2702000 37.0 70.0 71 1000.00 2.75 60.56 0 60.56 0/1
chr1 154029450 rs11264964 G C . PASS 0.1180000 0.4020000 0.2867000 0.2813000 0.3303000 0.2656000 37.0 70.0 18 201.59 26.98 38.89 0 38.89 0/1
chr1 154061855 rs2066135 T G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.03 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 154108387 rs3001361 G A . PASS 0.8858000 0.9942000 1.0000000 1.0000000 1.0000000 0.9690000 36.67 70.0 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 154108501 rs16835819 T C . PASS 0.0015000 0.0058000 0.0327000 0.0109000 0.0072000 0.0113820 37.0 70.0 18 289.28 11.11 50.00 0 50.00 0/1
chr1 154186918 rs12408458 G C . PASS 0.0348000 0.4986000 0.4335000 0.3648000 0.4816000 0.3329000 37.0 70.0 62 821.02 18.32 40.32 0 40.32 0/1
chr1 154218639 rs4040743,rs3838414 TTCAG T . PASS 0.3200000 0.6210000 0.5248000 0.4115000 0.6769000 0.4910000 35.65 70.0 28 800.37 5.90 82.14 0 82.14 0/1
chr1 154227239 rs1194604 C A . PASS . . . . . . 37.0 70.0 14 255.41 3.57 57.14 0 57.14 0/1
chr1 154228287 rs1194603 T C . PASS 0.8321000 0.7349000 0.9534000 0.5656000 0.7515000 0.7738000 33.57 70.0 14 193.76 14.29 50.00 0 50.00 0/1
chr1 154245142 rs11265425 T G . PASS . . . . . . 37.0 68.67 34 487.60 16.86 44.12 0 44.12 0/1
chr1 154245512 rs1194593 A G . PASS 0.6619000 0.3545000 0.4742000 0.5527000 0.3037000 0.4896000 36.67 70.0 78 1000.00 18.80 46.15 0 46.15 0/1
chr1 154310048 rs1760795 C G . PASS 0.1551000 0.4957000 0.6240000 0.4523000 0.5317000 0.4299000 36.7 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 154317153 rs1194587 C T . PASS 0.1203000 0.4899000 0.6240000 0.4523000 0.5317000 0.4199000 35.7 70.0 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 154317418 rs1194586 T C . PASS 0.1203000 0.4928000 0.6240000 0.4523000 0.5327000 0.4205000 36.14 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 154321072 rs1194591 A G . PASS 0.7882000 0.9726000 1.0000000 0.9990000 1.0000000 0.9401000 37.0 70.0 17 674.61 0.00 100.00 0 100.00 1/1
chr1 154387025 rs72698123 T C . PASS 0.0371000 0.0130000 0.0476000 0.0070000 0.0072000 0.0240000 37.0 70.0 10 229.82 17.14 70.00 0 70.00 0/1
chr1 154401679 rs2228144 G A . PASS 0.0484000 0.1023000 0.1042000 0.1789000 0.1738000 0.1178000 35.4 70.0 38 455.69 9.47 39.47 0 39.47 0/1
chr1 154401972 rs6694817 T C . PASS 0.6891000 0.6816000 0.4345000 0.5567000 0.4826000 0.5699000 36.56 70.0 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 154407419 rs7518199 A C . PASS 0.1944000 0.5490000 0.3323000 0.3678000 0.3037000 0.3275000 35.8 70.0 21 305.86 6.67 47.62 0 47.62 0/1
chr1 154407713 rs7521458 T C . PASS 0.0893000 0.5331000 0.3442000 0.3688000 0.3037000 0.3001000 37.0 70.0 23 190.69 3.73 30.43 0 30.43 0/1
chr1 154408340 rs4845371 T C . PASS 0.6657000 0.6816000 0.4296000 0.5596000 0.5041000 0.5675000 36.4 70.0 20 787.91 0.00 100.00 0 100.00 1/1
chr1 154420778 rs7529229 T C . PASS 0.6604000 0.5850000 0.3204000 0.3738000 0.3016000 0.4539000 37.0 70.0 13 220.79 0.00 53.85 0 53.85 0/1
chr1 154426947 rs4845374 T A . PASS 0.2617000 0.1066000 0.1042000 0.1759000 0.1922000 0.1777000 35.8 70.0 33 401.09 7.46 39.39 0 45.45 0/1
chr1 154426970 rs2228145 A C . PASS 0.0870000 0.5360000 0.3234000 0.3598000 0.2996000 0.2931000 37.0 70.0 40 761.93 8.18 55.00 0 55.00 0/1
chr1 154437896 rs2229238 T C . PASS 0.7731000 0.8631000 0.8065000 0.7803000 0.7894000 0.7969000 36.34 69.73 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 154458932 rs4845632 A G . PASS 0.6392000 0.9784000 1.0000000 0.9970000 1.0000000 0.9012000 36.74 69.57 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 154459197 rs4845633 C G . PASS 0.8563000 0.9928000 1.0000000 1.0000000 1.0000000 0.9611000 37.0 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 154474131 rs4845635 C G . PASS 0.5635000 0.8790000 0.9117000 0.8241000 0.8057000 0.7770000 36.38 70.0 68 1000.00 6.94 57.35 0 57.35 0/1
chr1 154474557 rs6703672 T C . PASS 0.5711000 0.8790000 0.9117000 0.8241000 0.8057000 0.7790000 37.0 70.0 50 610.67 0.84 38.00 0 38.00 0/1
chr1 154479657 rs10654618 C CAT . PASS 0.6422000 0.9798000 1.0000000 0.9970000 1.0000000 0.9022000 36.57 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 154479670 rs6664608 C T . PASS 0.1180000 0.7089000 0.7401000 0.5934000 0.5777000 0.5104000 35.86 70.0 47 679.22 8.92 44.68 0 44.68 0/1
chr1 154492702 rs10908842 G A . PASS 0.1180000 0.7089000 0.7381000 0.5944000 0.5746000 0.5096000 37.0 70.0 14 217.79 28.57 50.00 0 50.00 0/1
chr1 154493721 rs6684225 T C . PASS 0.6377000 0.9784000 1.0000000 0.9970000 1.0000000 0.9008000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 154494082 rs4269769 G C . PASS . . . . . . 37.0 70.0 10 142.13 0.00 50.00 0 50.00 0/1
chr1 154516477 rs12750774 G A . PASS 0.0144000 0.2522000 0.0308000 0.3082000 0.1258000 0.1314000 37.0 70.0 130 1000.00 1.98 53.08 0 53.08 0/1
chr1 154516571 rs6678164 T C . PASS 0.6362000 0.9784000 1.0000000 0.9970000 1.0000000 0.9004000 36.83 70.0 141 1000.00 0.00 100.00 0 100.00 1/1
chr1 154523562 rs9427082 G T . PASS 0.0212000 0.1499000 0.0982000 0.1730000 0.1973000 0.1194000 37.0 70.0 19 240.35 11.84 42.11 0 42.11 0/1
chr1 154523588 rs10908849 T G . PASS 0.4766000 0.9539000 0.9990000 0.9871000 0.9969000 0.8520000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 154524973 rs12144146 A G . PASS 0.0144000 0.2522000 0.0169000 0.3052000 0.1319000 0.1292000 37.0 69.35 70 1000.00 1.84 44.29 0 44.29 0/1
chr1 154528053 rs56047170 G A . PASS 0.2587000 0.1643000 0.0982000 0.1640000 0.1820000 0.1793000 35.93 70.0 69 1000.00 1.93 65.22 0 65.22 0/1
chr1 154528086 rs4078519 T C . PASS 0.4554000 0.9625000 1.0000000 0.9970000 1.0000000 0.8504000 36.64 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 154531090 rs368389808,rs377524998 TCCG T . PASS 0.7216000 0.8429000 0.9008000 0.8360000 0.8149000 0.8157000 34.62 62.0 35 167.77 80.00 22.86 0 22.86 0/1
chr1 154540468 rs2280781 C T . PASS 0.0832000 0.1196000 0.1161000 0.0974000 0.1708000 0.1148000 37.0 70.0 30 670.87 2.46 63.33 0 63.33 0/1
chr1 154544651 rs4845378 G T . PASS 0.0507000 0.1138000 0.1280000 0.0984000 0.1810000 0.1100000 36.54 70.0 48 892.92 8.65 54.17 0 54.17 0/1
chr1 154557685 rs9427094 C T . PASS 0.1997000 0.4769000 0.4990000 0.4712000 0.3834000 0.3888000 36.04 70.0 57 816.20 11.23 43.86 0 43.86 0/1
chr1 154562624 rs201932953 CG C . PASS 0.4826000 0.5447000 0.5823000 0.5427000 0.5419000 0.5349000 36.01 69.75 80 1000.00 16.54 32.50 0 100.00 0/1
chr1 154562625 rs7532276 G C . PASS 0.5023000 0.4553000 0.4177000 0.4573000 0.4581000 0.4611000 36.01 69.75 80 1000.00 7.96 67.50 0 100.00 0/1
chr1 154573967 rs2229857 T C . PASS 0.3691000 0.7579000 0.6687000 0.6730000 0.7699000 0.6226000 36.64 70.0 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 154574820 rs1466731 T C . PASS 0.9856000 1.0000000 1.0000000 1.0000000 1.0000000 0.9962000 36.45 70.0 87 1000.00 0.00 100.00 0 100.00 1/1
chr1 154575040 rs1802645 C T . PASS 0.9887000 1.0000000 1.0000000 1.0000000 1.0000000 0.9970000 36.45 70.0 110 1000.00 0.00 100.00 0 100.00 1/1
chr1 154580458 rs58655370 C A . PASS 0.4834000 0.2968000 0.1369000 0.1909000 0.3589000 0.3047000 35.98 70.0 113 1000.00 9.21 52.21 0 52.21 0/1
chr1 154744807 rs1051614 C G . PASS 0.4493000 0.4625000 0.5198000 0.6252000 0.6268000 0.5353000 36.76 70.0 102 1000.00 3.92 50.00 0 50.00 0/1
chr1 154744852 rs1131820 A G . PASS 0.5930000 0.8401000 0.9831000 0.7445000 0.8129000 0.7792000 37.0 70.0 66 1000.00 1.13 53.03 0 53.03 0/1
chr1 154810030 rs1218578 A G . PASS 0.3949000 0.5259000 0.6260000 0.5169000 0.5389000 0.5122000 36.89 70.0 113 1000.00 0.00 100.00 0 100.00 1/1
chr1 154832290 rs1061122 C T . PASS 0.4592000 0.1571000 0.0159000 0.2306000 0.1135000 0.2147000 37.0 70.0 29 506.80 11.03 51.72 0 51.72 0/1
chr1 154832304 rs4845397 T C . PASS 0.4070000 0.7939000 0.9841000 0.7028000 0.8221000 0.7173000 37.0 70.0 22 402.55 13.64 54.55 0 54.55 0/1
chr1 154832322 rs1218586 A C . PASS 0.9251000 0.9683000 1.0000000 0.9602000 0.9489000 0.9579000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 154842199 . G GGCTGCTGCTGCTGCT . PASS . . . . . . 36.57 69.96 136 1000.00 0.26 78.68 0 96.32 0/1
chr1 154919080 rs2061690 C T . PASS 0.1498000 0.6297000 0.8958000 0.4334000 0.6237000 0.5160000 36.54 70.0 45 906.10 6.67 57.78 0 57.78 0/1
chr1 154934665 rs7528548 C T . PASS 0.0885000 0.0173000 0.0020000 0.0199000 0.0521000 0.0403000 35.96 69.13 60 723.63 1.74 38.33 0 38.33 0/1
chr1 154938235 rs1131397 G C . PASS 0.5061000 0.0576000 0.0020000 0.0278000 0.0552000 0.1583000 37.0 70.0 76 1000.00 8.36 44.74 0 44.74 0/1
chr1 154938662 rs8191979 T C . PASS 0.1505000 0.0288000 0.0020000 0.0278000 0.0552000 0.0605000 36.62 70.0 121 1000.00 4.46 52.07 0 52.07 0/1
chr1 154983539 rs6686021 C T . PASS 0.2345000 0.3646000 0.7421000 0.4245000 0.5695000 0.4583000 37.0 70.0 27 679.90 5.85 70.37 0 70.37 0/1
chr1 154987526 rs11264295 C T . PASS 0.4592000 0.6671000 0.9058000 0.4513000 0.6718000 0.6178000 36.37 70.0 38 634.78 15.79 50.00 0 50.00 0/1
chr1 154988957 rs2242195 A G . PASS 0.4811000 0.7478000 0.9127000 0.5785000 0.7321000 0.6735000 36.88 70.0 104 1000.00 0.00 100.00 0 100.00 1/1
chr1 154995503 rs2242193 G A . PASS 0.4569000 0.6686000 0.9058000 0.4503000 0.6810000 0.6190000 37.0 70.0 24 438.31 2.56 54.17 0 54.17 0/1
chr1 154995920 rs72702247 G A . PASS 0.0000000 0.0187000 0.0000000 0.0139000 0.0235000 0.0099840 37.0 70.0 66 896.67 2.02 40.91 0 40.91 0/1
chr1 155001929 rs10908452 T C . PASS 0.4342000 0.5908000 0.8790000 0.3618000 0.6196000 0.5671000 37.0 70.0 20 325.03 10.00 50.00 0 50.00 0/1
chr1 155006091 rs10908453 A G . PASS 0.5416000 0.6052000 0.8810000 0.3608000 0.6258000 0.5988000 37.0 70.0 88 1000.00 1.11 55.68 0 55.68 0/1
chr1 155006999 rs6680600 C T . PASS 0.4266000 0.5922000 0.8819000 0.3579000 0.6227000 0.5657000 36.44 70.0 157 1000.00 7.01 40.76 0 40.76 0/1
chr1 155007293 rs4845404 C T . PASS 0.4266000 0.5922000 0.8819000 0.3588000 0.6227000 0.5659000 36.33 70.0 32 611.07 5.56 56.25 0 56.25 0/1
chr1 155007302 rs4845405 C A . PASS 0.4312000 0.5922000 0.8819000 0.3579000 0.6227000 0.5669000 35.67 70.0 32 594.91 10.42 56.25 0 56.25 0/1
chr1 155019710 rs11264300 A C . PASS 0.3858000 0.5865000 0.8849000 0.3569000 0.6227000 0.5545000 37.0 70.0 84 1000.00 0.48 47.62 0 47.62 0/1
chr1 155026942 rs6427128 A C . PASS 0.8676000 0.9308000 0.9901000 0.8439000 0.8967000 0.9020000 37.0 70.0 101 1000.00 2.39 38.61 0 38.61 0/1
chr1 155031376 rs12023499 C T . PASS 0.2988000 0.4870000 0.8661000 0.1918000 0.4714000 0.4513000 37.0 70.0 16 378.84 0.00 68.75 0 68.75 0/1
chr1 155033308 rs11589479 G A . PASS 0.0045000 0.0951000 0.0089000 0.1819000 0.1145000 0.0751000 35.71 70.0 47 959.60 3.65 59.57 0 59.57 0/1
chr1 155033317 rs11264304 T C . PASS 0.4652000 0.7666000 0.9276000 0.6799000 0.7393000 0.6967000 37.0 70.0 48 616.69 3.07 39.58 0 39.58 0/1
chr1 155057499 rs3766918 A G . PASS 0.7073000 0.7089000 0.9177000 0.5815000 0.5706000 0.6979000 37.0 70.0 38 521.47 4.61 42.11 0 42.11 0/1
chr1 155106054 rs4390169 A G . PASS 0.1513000 0.3141000 0.1954000 0.5219000 0.4714000 0.3197000 36.31 70.0 52 1000.00 0.77 67.31 0 67.31 0/1
chr1 155106227 rs4745 A T . PASS 0.1520000 0.3141000 0.1964000 0.5209000 0.4714000 0.3199000 36.5 70.0 53 794.33 6.45 45.28 0 45.28 0/1
chr1 155106550 rs9297 A G . PASS 0.2352000 0.5937000 0.8046000 0.4105000 0.4888000 0.4842000 36.56 70.0 97 1000.00 3.34 56.70 0 56.70 0/1
chr1 155108287 rs11264333 G A . PASS 0.3094000 0.5951000 0.8046000 0.4095000 0.4877000 0.5036000 37.0 70.0 14 259.56 7.14 57.14 0 57.14 0/1
chr1 155142210 rs4421576 A G . PASS 0.6498000 0.6657000 0.7897000 0.4950000 0.5297000 0.6256000 37.0 70.0 35 655.82 2.41 54.29 0 54.29 0/1
chr1 155142229 rs4276914 G A . PASS 0.6498000 0.6657000 0.7897000 0.4940000 0.5297000 0.6254000 36.14 70.0 49 965.60 13.27 57.14 0 57.14 0/1
chr1 155149718 rs3814316 G A . PASS 0.2194000 0.5706000 0.7629000 0.3579000 0.4274000 0.4459000 35.11 70.0 57 553.58 3.51 33.33 0 33.33 0/1
chr1 155161168 rs12743084 C G . PASS 0.6104000 0.7147000 0.7619000 0.5477000 0.5481000 0.6306000 34.82 69.23 45 490.30 11.94 35.56 0 48.89 0/1
chr1 155161205 . G C . PASS . . . . . . 33.57 65.64 55 334.59 2.34 25.45 0 25.45 0/1
chr1 155161209 rs12728535 T C . PASS . . . . . . 34.47 66.05 48 386.89 0.60 29.17 0 39.58 0/1
chr1 155161234 rs61811943 G C . PASS . . . . . . 34.6 64.93 146 114.47 16.62 10.27 0 10.27 0/1
chr1 155161236 rs61811944 G C . PASS . . . . . . 36.14 65.0 146 96.73 10.37 9.59 0 9.59 0/1
chr1 155161265 rs201443032 G C . PASS . . . . . . 35.36 65.86 165 102.37 37.58 9.09 0 13.33 0/1
chr1 155161294 . G C . PASS . . . . . . 33.8 60.73 158 66.35 19.41 9.49 0 9.49 0/1
chr1 155161323 . TGG TTG . PASS . . . . . . 35.57 62.86 99 71.84 8.08 9.09 0 21.21 0/1
chr1 155161323 . TGG TGC . PASS . . . . . . 35.57 62.86 99 71.84 28.03 8.08 0 21.21 0/1
chr1 155161329 . G C . PASS . . . . . . 33.4 46.8 77 113.32 13.51 12.99 0 12.99 0/1
chr1 155162067 rs4072037 C T . PASS 0.6044000 0.7133000 0.7619000 0.5477000 0.5481000 0.6288000 36.54 70.0 60 860.95 1.28 43.33 0 43.33 0/1
chr1 155175892 rs914615 A G . PASS 0.6180000 0.7104000 0.7758000 0.5447000 0.5511000 0.6348000 36.14 70.0 23 471.08 2.48 60.87 0 60.87 0/1
chr1 155178782 rs760077 A T . PASS 0.6331000 0.7608000 0.7738000 0.6054000 0.5982000 0.6667000 37.0 70.0 49 818.39 2.04 48.98 0 48.98 0/1
chr1 155181843 rs2974935 G T . PASS 0.6112000 0.6859000 0.7609000 0.5239000 0.5460000 0.6214000 37.0 69.45 44 749.90 4.55 50.00 0 50.00 0/1
chr1 155182164 rs2075570 C T . PASS 0.6135000 0.6859000 0.7609000 0.5249000 0.5481000 0.6226000 37.0 61.93 33 452.99 9.52 42.42 0 42.42 0/1
chr1 155184975 rs140081212 A G . PASS 0.6309000 0.7608000 0.7669000 0.6044000 0.5982000 0.6645000 37.0 69.52 49 780.78 3.90 46.94 0 46.94 0/1
chr1 155186729 rs28445596 T C . PASS 0.6180000 0.6873000 0.7629000 0.5229000 0.5470000 0.6238000 36.53 69.2 85 1000.00 0.78 60.00 0 60.00 0/1
chr1 155186742 rs1057941 G A . PASS 0.1725000 0.5994000 0.7411000 0.3917000 0.4499000 0.4443000 36.25 69.12 78 1000.00 1.28 61.54 0 61.54 0/1
chr1 155202689 rs10796940 A C . PASS 0.5461000 0.3242000 0.6944000 0.3350000 0.3763000 0.4696000 37.0 70.0 39 597.86 5.98 46.15 0 46.15 0/1
chr1 155203060 rs56310840 G A . PASS 0.5348000 0.3314000 0.6944000 0.3410000 0.3753000 0.4687000 37.0 67.13 28 509.81 8.57 53.57 0 53.57 0/1
chr1 155205170 rs143255568 A G . PASS 0.0008000 0.1167000 0.0188000 0.0109000 0.0143000 0.0252000 37.0 68.83 18 163.98 55.56 33.33 0 33.33 0/1
chr1 155205669 rs28559737 G T . PASS 0.7912000 0.9798000 0.9990000 0.9960000 0.9990000 0.9409000 36.66 69.17 71 1000.00 0.00 100.00 0 100.00 1/1
chr1 155209360 rs2075569 C T . PASS 0.6195000 0.3300000 0.6984000 0.3360000 0.3722000 0.4900000 35.71 70.0 66 902.41 9.31 42.42 0 42.42 0/1
chr1 155230131 rs1142287 C T . PASS 0.5416000 0.3199000 0.6944000 0.2753000 0.3558000 0.4519000 36.79 70.0 116 1000.00 0.00 50.00 0 50.00 0/1
chr1 155231545 rs2242576 T G . PASS 0.6657000 0.3285000 0.6984000 0.2753000 0.3558000 0.4866000 36.59 70.0 53 1000.00 17.96 54.72 0 54.72 0/1
chr1 155232074 rs1046188 C T . PASS 0.5416000 0.3199000 0.6925000 0.2753000 0.3558000 0.4515000 37.0 70.0 11 101.50 36.36 36.36 0 36.36 0/1
chr1 155247707 rs12749306 G T . PASS 0.3011000 0.3069000 0.6944000 0.2813000 0.3344000 0.3836000 37.0 70.0 50 773.61 11.65 46.00 0 46.00 0/1
chr1 155258752 rs3814319 G A . PASS 0.6815000 0.3689000 0.6935000 0.3300000 0.3763000 0.5104000 36.23 70.0 155 1000.00 0.63 50.32 0 50.32 0/1
chr1 155258756 rs3814318 C T . PASS 0.4864000 0.3271000 0.6905000 0.2803000 0.3538000 0.4381000 37.0 70.0 155 1000.00 0.66 50.32 0 50.32 0/1
chr1 155260350 rs1052177 A G . PASS 0.4879000 0.3271000 0.6905000 0.2803000 0.3548000 0.4387000 36.08 69.23 49 882.06 1.57 53.06 0 53.06 0/1
chr1 155260383 rs1052176 G T . PASS 0.4879000 0.3271000 0.6895000 0.2803000 0.3548000 0.4385000 37.0 69.39 66 1000.00 0.00 50.00 0 50.00 0/1
chr1 155265177 rs2071053 A G . PASS 0.6293000 0.3429000 0.6905000 0.2833000 0.3558000 0.4790000 35.0 70.0 30 593.08 24.44 60.00 0 60.00 0/1
chr1 155279482 rs2297480 T G . PASS 0.2821000 0.3055000 0.6895000 0.2634000 0.3119000 0.3694000 35.29 70.0 18 189.58 4.76 38.89 0 38.89 0/1
chr1 155289545 rs11264361 T G . PASS 0.2133000 0.2954000 0.7054000 0.2644000 0.3067000 0.3522000 36.6 70.0 69 996.79 6.09 43.48 0 43.48 0/1
chr1 155291253 rs72704152 C T . PASS 0.0000000 0.0029000 0.0000000 0.0139000 0.0409000 0.0111820 35.85 70.0 120 1000.00 1.03 60.83 0 60.83 0/1
chr1 155291431 rs12741581 C T . PASS 0.0038000 0.0360000 0.0010000 0.0497000 0.0184000 0.0197680 35.0 70.0 20 384.56 3.33 60.00 0 60.00 0/1
chr1 155294274 rs914616 A G . PASS 0.8132000 0.9827000 1.0000000 1.0000000 1.0000000 0.9483000 36.5 69.79 96 1000.00 0.00 100.00 0 100.00 1/1
chr1 155294772 rs4971075 A G . PASS 0.7057000 0.9784000 0.9990000 1.0000000 0.9806000 0.9153000 35.38 70.0 53 1000.00 1.60 98.11 0 98.11 1/1
chr1 155311658 rs80187273 C T . PASS 0.0038000 0.0331000 0.0010000 0.0457000 0.0184000 0.0185700 36.2 70.0 31 488.77 1.29 48.39 0 48.39 0/1
chr1 155313047 rs4971051 T C . PASS 0.7073000 0.9784000 0.9990000 1.0000000 0.9806000 0.9157000 36.25 70.0 16 620.83 0.00 100.00 0 100.00 1/1
chr1 155327091 rs41264233 G A . PASS 0.0000000 0.0029000 0.0000000 0.0149000 0.0419000 0.0115820 37.0 70.0 44 670.50 5.45 45.45 0 45.45 0/1
chr1 155408635 rs4971053 T C . PASS 0.8147000 0.9827000 1.0000000 1.0000000 1.0000000 0.9487000 36.22 70.0 77 1000.00 0.00 100.00 0 100.00 1/1
chr1 155429490 rs10796946 A T . PASS 0.1422000 0.3069000 0.7063000 0.2763000 0.3139000 0.3391000 37.0 70.0 21 401.41 7.14 57.14 0 57.14 0/1
chr1 155429725 rs10908466 A C . PASS 0.1422000 0.3069000 0.7063000 0.2763000 0.3139000 0.3391000 36.57 70.0 42 994.52 4.76 66.67 0 66.67 0/1
chr1 155532316 rs12403379 T C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 37.0 69.84 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 155532325 rs12403380 T C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 37.0 69.83 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 155532332 rs34869594 T C . PASS 0.9592000 0.9971000 1.0000000 1.0000000 1.0000000 0.9888000 37.0 69.83 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 155532341 rs61812107 T C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 37.0 69.82 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 155581311 rs141265144 T C . PASS 0.1309000 0.2983000 0.6835000 0.2734000 0.3221000 0.3313000 37.0 59.67 55 929.78 9.16 49.09 0 49.09 0/1
chr1 155618415 rs5777949 CT C . PASS 0.6649000 0.9798000 1.0000000 1.0000000 0.9990000 0.9085000 36.6 68.64 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 155630752 rs3738590 A G . PASS 0.1581000 0.3026000 0.6806000 0.2744000 0.3211000 0.3385000 37.0 70.0 28 509.80 16.67 53.57 0 53.57 0/1
chr1 155658085 rs2666826 T C . PASS 0.8041000 0.3631000 0.6855000 0.2972000 0.3650000 0.5315000 36.51 69.98 108 1000.00 16.52 45.37 0 45.37 0/1
chr1 155658341 rs678157 T C . PASS 0.6664000 0.3271000 0.6835000 0.2435000 0.3108000 0.4685000 37.0 70.0 11 226.81 20.78 63.64 0 63.64 0/1
chr1 155715641 rs11264409 G A . PASS 0.2284000 0.3184000 0.6746000 0.2654000 0.2863000 0.3494000 37.0 63.5 15 89.46 6.67 26.67 0 26.67 0/1
chr1 155721911 rs201235180 C T . PASS 0.0000000 0.0000000 0.0000000 0.0070000 0.0225000 0.0057907 36.62 65.56 61 1000.00 1.33 52.46 0 52.46 0/1
chr1 155733358 rs72706143 G A . PASS . . . . . . 37.0 70.0 25 268.22 27.56 36.00 0 36.00 0/1
chr1 155735012 rs2297775 T C . PASS 0.1815000 0.3256000 0.6865000 0.2972000 0.3241000 0.3542000 37.0 70.0 46 664.48 5.65 43.48 0 43.48 0/1
chr1 155737385 rs849712 C T . PASS 0.7368000 0.9827000 1.0000000 1.0000000 0.9990000 0.9279000 37.0 66.56 16 632.84 0.00 100.00 0 100.00 1/1
chr1 155753676 rs822019 A G . PASS 0.4380000 0.9337000 0.9970000 0.9443000 0.9448000 0.8199000 35.91 70.0 11 411.98 0.00 100.00 0 100.00 1/1
chr1 155755097 rs822021 G A . PASS 0.7383000 0.9827000 1.0000000 1.0000000 1.0000000 0.9285000 35.95 69.75 80 1000.00 0.00 100.00 0 100.00 1/1
chr1 155755239 rs822022 T C . PASS 0.5802000 0.9395000 0.9980000 0.9443000 0.9652000 0.8624000 36.2 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 155785578 rs375366111,rs148569012 CAACT C . PASS 0.5809000 0.9395000 0.9980000 0.9443000 0.9652000 0.8626000 35.8 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 155829511 rs3820594 C T . PASS 0.1672000 0.3199000 0.6915000 0.2883000 0.3241000 0.3488000 36.37 70.0 51 595.65 1.86 37.25 0 37.25 0/1
chr1 155837865 rs822522 G C . PASS 0.8374000 0.9827000 1.0000000 1.0000000 1.0000000 0.9547000 36.52 69.47 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 155838267 rs822521 T C . PASS 0.7466000 0.9856000 1.0000000 1.0000000 1.0000000 0.9311000 36.38 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 155850558 rs822508 T C . PASS 0.2209000 0.6167000 0.1845000 0.6581000 0.6186000 0.4339000 35.67 70.0 15 286.31 4.44 60.00 0 60.00 0/1
chr1 155870416 rs1749409 G A . PASS 0.4327000 0.9078000 0.9405000 0.8926000 0.8763000 0.7798000 36.51 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 155880159 rs867549 T C . PASS 0.2965000 0.3084000 0.7579000 0.2376000 0.3016000 0.3802000 36.08 70.0 18 444.35 10.26 72.22 0 72.22 0/1
chr1 155880391 rs867550 T C . PASS 0.2708000 0.3069000 0.7619000 0.2376000 0.3016000 0.3740000 35.59 70.0 33 554.28 3.57 51.52 0 51.52 0/1
chr1 155880573 rs493446 C G . PASS 0.4334000 0.9078000 0.9405000 0.8926000 0.8763000 0.7800000 37.0 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 155880760 rs5777961,rs79437610 C CA . PASS 0.3472000 0.9035000 0.9405000 0.8917000 0.8691000 0.7550000 35.06 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 155899020 rs539602 A T . PASS 0.1369000 0.5994000 0.1786000 0.6551000 0.5746000 0.3990000 36.33 70.0 34 600.90 1.31 52.94 0 52.94 0/1
chr1 155903408 rs4661151 C T . PASS 0.1369000 0.5994000 0.1786000 0.6551000 0.5746000 0.3990000 37.0 70.0 54 765.72 2.90 42.59 0 42.59 0/1
chr1 155904177 rs2275079 T C . PASS 0.4334000 0.9063000 0.9395000 0.8926000 0.8763000 0.7796000 36.79 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 155912486 rs2152051 T C . PASS 0.7383000 0.9813000 0.9990000 1.0000000 0.9796000 0.9241000 36.56 70.0 82 1000.00 0.00 100.00 0 100.00 1/1
chr1 155917880 rs1010033 T A . PASS 0.4070000 0.9078000 0.9405000 0.8936000 0.8763000 0.7732000 36.0 68.33 12 449.60 0.00 100.00 0 100.00 1/1
chr1 155927752 rs2364403 G A . PASS 0.2723000 0.2882000 0.7827000 0.1819000 0.2996000 0.3644000 34.82 68.18 16 354.83 20.45 68.75 0 68.75 0/1
chr1 155928232 rs2364404 T C . PASS 0.4100000 0.9078000 0.9405000 0.8936000 0.8763000 0.7740000 36.67 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 155928242 rs2886069 C T . PASS 0.4334000 0.9092000 0.9405000 0.8936000 0.8763000 0.7804000 36.6 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 155935244 rs2297649 C A . PASS 0.2103000 0.3055000 0.7877000 0.2366000 0.3047000 0.3634000 36.0 70.0 24 380.38 16.67 50.00 0 50.00 0/1
chr1 155981489 rs1475766 C G . PASS 0.3094000 0.5375000 0.1498000 0.6054000 0.5583000 0.4169000 35.29 70.0 17 192.59 11.76 41.18 0 41.18 0/1
chr1 156011444 rs2297792 T C . PASS 0.3782000 0.5461000 0.1438000 0.6014000 0.5521000 0.4331000 37.0 69.24 86 1000.00 0.31 43.02 0 43.02 0/1
chr1 156104292 rs12117552 G A . PASS 0.0000000 0.0029000 0.0000000 0.0089000 0.0297000 0.0079872 36.56 70.0 57 911.75 12.87 47.37 0 47.37 0/1
chr1 156107534 rs4641 C T . PASS 0.0658000 0.3012000 0.2738000 0.2247000 0.3119000 0.2202000 36.49 70.0 69 1000.00 1.67 68.12 0 68.12 0/1
chr1 156128220 rs56271605 T C . PASS 0.0000000 0.0014000 0.0000000 0.0020000 0.0000000 0.0005990 37.0 70.0 63 989.25 7.66 46.03 0 46.03 0/1
chr1 156131095 rs201004039 C CGGGGCGG . PASS . . . . . . 36.0 70.0 10 358.64 0.00 100.00 0 100.00 1/1
chr1 156133038 rs7555253 T C . PASS 0.5825000 0.4179000 0.2907000 0.4066000 0.4356000 0.4369000 37.0 70.0 11 268.58 0.00 72.73 0 72.73 0/1
chr1 156146218 rs12401573 C T . PASS 0.3949000 0.5231000 0.2321000 0.6044000 0.4407000 0.4309000 35.29 69.43 66 1000.00 4.59 53.03 0 53.03 0/1
chr1 156169610 rs2072499 A G . PASS 0.6740000 0.3271000 0.1369000 0.3618000 0.2996000 0.3820000 35.95 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 156182710 rs2241107 T C . PASS 0.6725000 0.3271000 0.1379000 0.3618000 0.2996000 0.3818000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 156186369 rs11264459 A C . PASS . . . . . . 36.0 68.33 12 380.04 0.00 16.67 0 100.00 0/1
chr1 156186369 rs11264459 A T . PASS . . . . . . 36.0 68.33 12 380.04 0.00 83.33 0 100.00 0/1
chr1 156195482 rs72708297 G T . PASS 0.0000000 0.0000000 0.0000000 0.0040000 0.0000000 0.0007987 36.57 70.0 60 940.34 13.33 46.67 0 46.67 0/1
chr1 156202173 rs1052053 A G . PASS 0.7065000 0.3660000 0.3313000 0.3708000 0.3528000 0.4473000 36.8 70.0 123 1000.00 0.00 100.00 0 100.00 1/1
chr1 156206121 rs1052067 G A . PASS 0.1127000 0.2190000 0.2073000 0.2773000 0.1851000 0.1937000 36.33 70.0 99 1000.00 0.00 36.36 0 36.36 0/1
chr1 156255833 rs2842883 G C . PASS 0.9236000 0.9957000 1.0000000 0.9940000 1.0000000 0.9780000 36.47 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 156264648 rs1570805 C T . PASS 0.0113000 0.1254000 0.0466000 0.1074000 0.0348000 0.0581000 37.0 70.0 49 446.60 0.54 30.61 0 30.61 0/1
chr1 156314497 rs41265043 C T . PASS 0.0015000 0.0086000 0.0000000 0.0229000 0.0092000 0.0079872 34.74 70.0 106 1000.00 1.89 50.00 0 50.00 0/1
chr1 156347131 rs2245623 G A . PASS 0.1936000 0.2781000 0.1012000 0.4563000 0.3528000 0.2706000 36.33 70.0 96 1000.00 0.69 56.25 0 56.25 0/1
chr1 156347309 rs56353055 A G . PASS 0.1293000 0.0461000 0.0169000 0.0666000 0.0286000 0.0629000 36.57 70.0 79 887.32 12.57 35.44 0 35.44 0/1
chr1 156351066 rs942679 C A . PASS 0.0507000 0.2651000 0.1111000 0.4553000 0.3517000 0.2326000 37.0 70.0 19 198.58 16.54 36.84 0 36.84 0/1
chr1 156351699 rs3748569 G A . PASS 0.5719000 0.6037000 0.7014000 0.4095000 0.4438000 0.5447000 37.0 70.0 71 1000.00 1.41 47.89 0 47.89 0/1
chr1 156351792 rs3748568 G A . PASS 0.5431000 0.5490000 0.7480000 0.4016000 0.4417000 0.5369000 37.0 70.0 69 1000.00 1.57 50.72 0 50.72 0/1
chr1 156354293 rs6668731 A G . PASS 0.6074000 0.2911000 0.5446000 0.2396000 0.3313000 0.4231000 37.0 70.0 28 384.49 2.38 42.86 0 42.86 0/1
chr1 156354347 rs11303415 TC T . PASS 0.6059000 0.2925000 0.5446000 0.2396000 0.3313000 0.4229000 36.25 70.0 81 1000.00 3.86 39.51 0 39.51 0/1
chr1 156354367 rs6668857 A G . PASS 0.8956000 0.6686000 0.8978000 0.5149000 0.6135000 0.7330000 37.0 70.0 86 1000.00 16.28 50.00 0 50.00 0/1
chr1 156446242 rs2274316 C A . PASS 0.2360000 0.5937000 0.7560000 0.6710000 0.7147000 0.5711000 35.72 70.0 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 156446903 rs2274317 T C . PASS 0.2368000 0.5951000 0.7560000 0.6720000 0.7147000 0.5717000 36.66 70.0 107 1000.00 0.00 100.00 0 100.00 1/1
chr1 156450740 rs1925950 G A . PASS 0.2368000 0.5951000 0.7560000 0.6730000 0.7168000 0.5723000 35.97 70.0 117 1000.00 0.00 100.00 0 100.00 1/1
chr1 156450873 rs2274319 T C . PASS 0.5265000 0.6138000 0.7560000 0.6750000 0.7168000 0.6518000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 156498673 rs1171564 T A . PASS 0.8472000 0.4366000 0.5933000 0.3191000 0.6769000 0.5998000 36.7 70.0 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 156499969 rs1171566 T C . PASS 0.8449000 0.4424000 0.6022000 0.3300000 0.6851000 0.6056000 36.82 69.7 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 156500128 rs746505 T C . PASS 0.5469000 0.3357000 0.5744000 0.1958000 0.5521000 0.4537000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 156503541 rs6699212 T C . PASS 0.9539000 0.9986000 1.0000000 1.0000000 1.0000000 0.9876000 37.0 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 156504104 rs7552082 A C . PASS 0.8487000 0.4452000 0.6022000 0.3290000 0.6892000 0.6076000 35.91 70.0 11 407.83 0.00 100.00 0 100.00 1/1
chr1 156505061 rs942965 C T . PASS 0.2511000 0.3156000 0.5655000 0.1899000 0.5358000 0.3666000 36.69 69.49 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 156509552 rs1171570 C G . PASS 0.9539000 0.9986000 1.0000000 1.0000000 1.0000000 0.9876000 37.0 70.0 22 879.32 0.00 100.00 0 100.00 1/1
chr1 156518379 rs744224 G A . PASS 0.2958000 0.3646000 0.5724000 0.2575000 0.5716000 0.4071000 35.93 69.85 134 1000.00 0.00 100.00 0 100.00 1/1
chr1 156520173 rs1778819 T A . PASS 0.9554000 0.9986000 1.0000000 1.0000000 1.0000000 0.9880000 36.77 70.0 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 156524221 rs6694580 G T . PASS 0.2262000 0.3617000 0.5367000 0.3062000 0.5982000 0.3962000 36.62 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 156526444 rs2488269 T C . PASS 0.8548000 0.9885000 1.0000000 1.0000000 1.0000000 0.9601000 36.58 69.86 142 1000.00 0.00 100.00 0 100.00 1/1
chr1 156526564 rs2489138 C A . PASS 0.1982000 0.3588000 0.5397000 0.3062000 0.5982000 0.3890000 37.0 70.0 20 795.78 0.00 100.00 0 100.00 1/1
chr1 156532252 rs1778827 C T . PASS 0.8548000 0.9885000 1.0000000 1.0000000 1.0000000 0.9601000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 156532977 rs1171547 T C . PASS 0.8540000 0.9885000 1.0000000 1.0000000 1.0000000 0.9599000 36.37 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 156536123 rs2066378 T C . PASS 0.8540000 0.9885000 1.0000000 1.0000000 1.0000000 0.9599000 36.45 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 156536133 rs4382715 A G . PASS 0.8540000 0.9885000 1.0000000 1.0000000 1.0000000 0.9599000 36.48 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 156536221 rs2066377 G C . PASS 0.8540000 0.9885000 1.0000000 1.0000000 1.0000000 0.9599000 36.58 70.0 86 1000.00 0.00 100.00 0 100.00 1/1
chr1 156536251 rs947662 T C . PASS 0.8540000 0.9885000 1.0000000 1.0000000 1.0000000 0.9599000 36.62 70.0 96 1000.00 0.00 100.00 0 100.00 1/1
chr1 156536353 rs947663 A G . PASS 0.8540000 0.9885000 1.0000000 1.0000000 1.0000000 0.9599000 36.67 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 156539154 rs6427319 T C . PASS 0.9667000 1.0000000 1.0000000 0.9980000 1.0000000 0.9908000 36.72 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 156553102 rs34924172 AG A . PASS 0.1135000 0.2752000 0.4583000 0.2455000 0.5521000 0.3175000 36.73 69.09 22 867.90 0.00 100.00 0 100.00 1/1
chr1 156553762 rs11264502 A C . PASS 0.8056000 0.9424000 0.9692000 0.9583000 0.9151000 0.9095000 37.0 70.0 13 503.38 0.00 100.00 0 100.00 1/1
chr1 156556321 rs10796961 G A . PASS 0.2859000 0.9063000 0.9692000 0.9573000 0.9192000 0.7680000 36.33 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 156561557 rs149629319 G GGGGTCGGGCC . PASS . . . . . . 36.83 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 156561651 rs7516274 G C . PASS 0.8638000 0.9568000 0.9722000 0.9592000 0.9202000 0.9287000 36.69 70.0 77 1000.00 0.00 100.00 0 100.00 1/1
chr1 156562008 rs1925949 G A . PASS 0.8638000 0.9568000 0.9722000 0.9592000 0.9192000 0.9285000 37.0 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 156562143 rs942959 G A . PASS 0.8638000 0.9568000 0.9722000 0.9592000 0.9192000 0.9285000 36.28 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 156563375 rs6427321 G A . PASS 0.8638000 0.9568000 0.9722000 0.9592000 0.9192000 0.9285000 36.39 70.0 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 156563726 rs6427322 A C . PASS 0.8638000 0.9568000 0.9722000 0.9592000 0.9192000 0.9285000 36.41 69.87 101 1000.00 0.00 100.00 0 100.00 1/1
chr1 156563813 rs6668178 G A . PASS 0.8638000 0.9568000 0.9722000 0.9592000 0.9192000 0.9285000 35.88 69.94 96 1000.00 0.00 100.00 0 100.00 1/1
chr1 156563852 rs942963 C T . PASS 0.8638000 0.9568000 0.9722000 0.9592000 0.9192000 0.9285000 36.09 70.0 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 156563898 rs1270 T C . PASS 0.8638000 0.9568000 0.9722000 0.9592000 0.9192000 0.9285000 36.68 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 156565049 rs72559129 A AAC . PASS 0.9781000 1.0000000 1.0000000 1.0000000 1.0000000 0.9942000 36.45 69.39 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 156565834 rs12024215 G C . PASS 0.1135000 0.2752000 0.4544000 0.2445000 0.5573000 0.3175000 36.41 69.51 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 156594364 rs12405992 T C . PASS 0.1089000 0.2349000 0.3770000 0.2465000 0.5440000 0.2929000 36.82 70.0 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 156617968 rs2277873 G A . PASS 0.2413000 0.3530000 0.3482000 0.3718000 0.5225000 0.3594000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 156618768 rs4661209 T G . PASS 0.8949000 0.4669000 0.4038000 0.4742000 0.6810000 0.6104000 37.0 70.0 20 795.78 0.00 100.00 0 100.00 1/1
chr1 156622252 rs1056695 G A . PASS 0.2595000 0.3718000 0.3532000 0.3926000 0.5337000 0.3742000 36.73 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 156626920 rs7524611 T C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.66 70.0 71 1000.00 0.00 100.00 0 100.00 1/1
chr1 156628717 rs951964 C A . PASS 0.4213000 0.4597000 0.3968000 0.4414000 0.6656000 0.4734000 36.5 70.0 24 950.84 0.00 100.00 0 100.00 1/1
chr1 156629037 rs11360 A G . PASS 0.6611000 0.4726000 0.4077000 0.4483000 0.6718000 0.5433000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 156641537 rs951781 C T . PASS 0.0363000 0.2738000 0.1200000 0.3439000 0.3252000 0.2043000 37.0 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 156646668 rs4278369 A G . PASS 0.9939000 1.0000000 1.0000000 1.0000000 1.0000000 0.9984000 37.0 70.0 89 1000.00 0.00 100.00 0 100.00 1/1
chr1 156670545 rs4661213 C T . PASS 0.7352000 0.9697000 1.0000000 0.9732000 0.9622000 0.9131000 35.91 70.0 22 859.44 0.00 100.00 0 100.00 1/1
chr1 156696603 rs35890195 G A . PASS 0.0045000 0.0144000 0.0010000 0.0567000 0.0399000 0.0226000 37.0 70.0 14 217.79 0.00 50.00 0 50.00 0/1
chr1 156705593 rs4311877 G C . PASS 0.8933000 0.9942000 1.0000000 1.0000000 1.0000000 0.9710000 37.0 70.0 98 1000.00 0.00 100.00 0 100.00 1/1
chr1 156706559 rs8658 A G . PASS 0.6974000 0.8170000 0.6865000 0.6740000 0.7290000 0.6382000 37.0 70.0 43 1000.00 5.00 62.79 0 100.00 0/1
chr1 156706559 rs8658 A C . PASS 0.6974000 0.8170000 0.6865000 0.6740000 0.7290000 0.6382000 37.0 70.0 43 1000.00 8.43 37.21 0 100.00 0/1
chr1 156707697 rs11581044 G A . PASS 0.1369000 0.1700000 0.6855000 0.3260000 0.2710000 0.3161000 37.0 70.0 16 211.76 26.79 43.75 0 43.75 0/1
chr1 156707775 rs6670122 T G . PASS 0.8601000 0.9899000 1.0000000 1.0000000 1.0000000 0.9617000 36.27 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 156708244 rs28697076 C G . PASS 0.1838000 0.2695000 0.0833000 0.2336000 0.3517000 0.2183000 35.5 70.0 37 818.47 3.15 64.86 0 64.86 0/1
chr1 156713512 rs4437869 C T . PASS 0.8616000 0.9899000 1.0000000 1.0000000 1.0000000 0.9621000 36.25 69.95 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 156713558 rs4399146 G A . PASS 0.0666000 0.2219000 0.1250000 0.3340000 0.2638000 0.1921000 36.38 69.95 74 1000.00 10.12 52.70 0 52.70 0/1
chr1 156721654 . C T . PASS . . . . . . 35.0 70.0 12 170.02 16.67 50.00 0 50.00 0/1
chr1 156752048 rs2274503 C G . PASS 0.4629000 0.6715000 0.8145000 0.7038000 0.6411000 0.6458000 36.5 69.58 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 156752231 rs367770256,rs3831129 AT A . PASS 0.4629000 0.6715000 0.8145000 0.7038000 0.6411000 0.6458000 36.65 70.0 17 659.05 0.00 100.00 0 100.00 1/1
chr1 156784982 rs926103 T C . PASS 0.3192000 0.6297000 0.8155000 0.6620000 0.6401000 0.5936000 36.61 70.0 123 1000.00 0.00 100.00 0 100.00 1/1
chr1 156785617 rs1800601 G A . PASS 0.4440000 0.6657000 0.8135000 0.6948000 0.6360000 0.6370000 35.99 70.0 83 1000.00 0.00 100.00 0 100.00 1/1
chr1 156785762 rs11325907 AG A . PASS 0.2761000 0.6340000 0.8125000 0.6610000 0.6339000 0.5809000 36.39 70.0 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 156785771 rs7546838 A G . PASS 0.4062000 0.6398000 0.8125000 0.6610000 0.6339000 0.6160000 36.3 70.0 69 1000.00 0.00 100.00 0 100.00 1/1
chr1 156785779 rs1800600 G A . PASS 0.5340000 0.6744000 0.8135000 0.6958000 0.6401000 0.6629000 36.65 70.0 69 1000.00 0.00 100.00 0 100.00 1/1
chr1 156786573 rs34770558 CTC CAA . PASS . . . . . . 35.29 70.0 17 201.62 13.45 41.18 1 41.18 0/1
chr1 156786574 rs12738727 T A . PASS 0.0015000 0.0043000 0.0010000 0.0239000 0.0123000 0.0083866 35.5 70.0 15 240.38 3.33 53.33 1 53.33 0/1
chr1 156786575 rs12753240 C A . PASS 0.0015000 0.0043000 0.0020000 0.0239000 0.0123000 0.0085863 35.29 70.0 14 201.62 0.00 50.00 1 50.00 0/1
chr1 156818647 rs11590051 T C . PASS 0.0091000 0.2032000 0.0278000 0.1928000 0.1329000 0.1008000 36.33 70.0 33 608.06 7.07 54.55 0 54.55 0/1
chr1 156830779 rs1007211 G A . PASS 0.0008000 0.0043000 0.0000000 0.0010000 0.0000000 0.0009984 36.74 70.0 98 1000.00 0.26 47.96 0 47.96 0/1
chr1 156838141 rs1800879 T C . PASS 0.6097000 0.6369000 0.9554000 0.6034000 0.7628000 0.7117000 37.0 70.0 33 536.53 15.15 48.48 0 48.48 0/1
chr1 156845492 . AG A . PASS . . . . . . 35.45 70.0 114 1000.00 2.95 46.49 1 46.49 0/1
chr1 156845492 . AGT AGTGTGT . PASS . . . . . . . . 119 1000.00 1.01 42.02 1 97.48 0/1
chr1 156845492 . AGT A . PASS . . . . . . 35.48 70.0 119 1000.00 2.49 45.38 1 97.48 0/1
chr1 156845493 . GT G . PASS . . . . . . 35.45 70.0 114 1000.00 1.19 46.49 1 46.49 0/1
chr1 156846233 rs6334 G A . PASS 0.1142000 0.2205000 0.3204000 0.1968000 0.2464000 0.2129000 36.75 70.0 108 1000.00 6.02 44.44 0 44.44 0/1
chr1 156848995 rs6337 C T . PASS 0.1384000 0.5735000 0.0437000 0.7127000 0.3384000 0.3341000 36.23 70.0 145 1000.00 6.23 42.76 0 42.76 0/1
chr1 156850104 rs2274499 G C . PASS 0.5779000 0.8256000 0.4484000 0.9225000 0.6339000 0.6663000 36.14 70.0 14 533.14 0.00 100.00 0 100.00 1/1
chr1 156850112 rs2274500 T G . PASS 0.5779000 0.8271000 0.4474000 0.9235000 0.6350000 0.6667000 37.0 70.0 16 628.69 0.00 100.00 0 100.00 1/1
chr1 156873727 rs12407843 G A . PASS 0.1460000 0.1499000 0.3442000 0.1113000 0.2229000 0.1945000 37.0 70.0 34 115.82 21.57 17.65 0 17.65 0/1
chr1 156875037 rs6676171 T G . PASS 0.7103000 0.4179000 0.7966000 0.2038000 0.5982000 0.5635000 37.0 70.0 17 413.45 8.82 70.59 0 70.59 0/1
chr1 156875092 rs4661074 G A . PASS 0.1369000 0.5735000 0.2034000 0.7962000 0.4018000 0.3950000 37.0 70.0 46 748.02 18.97 47.83 0 47.83 0/1
chr1 156875097 rs4661075 G A . PASS 0.2595000 0.5850000 0.2450000 0.7992000 0.4254000 0.4425000 37.0 70.0 44 712.27 19.70 47.73 0 47.73 0/1
chr1 156875107 rs2644590 C A . PASS 0.1263000 0.5735000 0.2034000 0.7952000 0.4018000 0.3920000 36.0 70.0 56 773.29 17.86 42.86 0 42.86 0/1
chr1 156876206 rs6688345 G A . PASS 0.3434000 0.1657000 0.3641000 0.1103000 0.2249000 0.2530000 37.0 70.0 31 417.23 1.99 41.94 0 41.94 0/1
chr1 156876221 rs6688349 G A . PASS 0.3427000 0.1657000 0.3641000 0.1103000 0.2249000 0.2528000 37.0 70.0 18 331.05 20.00 55.56 0 55.56 0/1
chr1 156876237 rs6664765 C T . PASS 0.3434000 0.1671000 0.3641000 0.1103000 0.2249000 0.2532000 37.0 70.0 16 253.53 25.00 50.00 0 50.00 0/1
chr1 156876260 rs6664770 C T . PASS 0.3434000 0.1671000 0.3631000 0.1103000 0.2249000 0.2530000 37.0 70.0 12 223.80 38.10 58.33 0 58.33 0/1
chr1 156876373 rs6677442 A G . PASS 0.3427000 0.1715000 0.3681000 0.1302000 0.2260000 0.2586000 36.66 69.43 56 1000.00 12.14 62.50 0 62.50 0/1
chr1 156876729 rs735953 T C . PASS 0.3480000 0.1657000 0.3641000 0.1093000 0.2270000 0.2544000 36.0 70.0 34 354.43 1.96 35.29 0 35.29 0/1
chr1 156877457 rs1952294 T C . PASS 0.9100000 0.9971000 1.0000000 1.0000000 1.0000000 0.9758000 36.71 69.88 165 1000.00 0.00 100.00 0 100.00 1/1
chr1 156877797 rs77235035 C A . PASS 0.2383000 0.1931000 0.3502000 0.1223000 0.2198000 0.2276000 36.53 68.82 119 1000.00 8.96 42.86 0 42.86 0/1
chr1 156877884 rs150532135 T TG . PASS 0.1543000 0.1816000 0.3492000 0.1262000 0.2280000 0.2061000 36.25 68.75 37 481.87 4.68 40.54 0 43.24 0/1
chr1 156878435 rs11800463 C T . PASS 0.2617000 0.1585000 0.3135000 0.1243000 0.2260000 0.2232000 35.24 70.0 94 1000.00 0.57 43.62 0 43.62 0/1
chr1 156878531 rs11264580 T C . PASS 0.2617000 0.1585000 0.3135000 0.1243000 0.2260000 0.2232000 36.72 70.0 84 1000.00 6.64 51.19 0 51.19 0/1
chr1 156878737 rs6671392 T C . PASS 0.2617000 0.1585000 0.3145000 0.1243000 0.2260000 0.2234000 36.4 70.0 52 634.41 5.38 38.46 0 38.46 0/1
chr1 156878887 rs11810027 G A . PASS 0.1944000 0.1484000 0.3135000 0.1243000 0.2260000 0.2041000 37.0 70.0 15 173.00 20.00 40.00 0 40.00 0/1
chr1 156879504 rs41273205 A G . PASS 0.2617000 0.1196000 0.3145000 0.1074000 0.1881000 0.2073000 35.8 68.0 38 258.86 5.26 26.32 0 26.32 0/1
chr1 156879532 rs41273207 C T . PASS 0.0000000 0.0202000 0.0000000 0.0358000 0.0286000 0.0155750 36.52 68.4 71 786.07 24.68 35.21 0 35.21 0/1
chr1 156879580 rs3737224 C T . PASS 0.1589000 0.1037000 0.3145000 0.1024000 0.1871000 0.1767000 36.64 69.39 88 1000.00 11.36 37.50 0 37.50 0/1
chr1 156881959 rs41273215 C T . PASS 0.1536000 0.1037000 0.3145000 0.1034000 0.1728000 0.1727000 36.43 69.05 48 688.22 7.14 43.75 0 43.75 0/1
chr1 156882996 rs822441 G C . PASS 0.5477000 0.1470000 0.3323000 0.1590000 0.2843000 0.3193000 36.43 70.0 59 650.96 15.33 35.59 0 35.59 0/1
chr1 156883215 rs822442 C A . PASS 0.2481000 0.1023000 0.2897000 0.1034000 0.1585000 0.1897000 36.08 70.0 67 823.72 9.18 38.81 0 38.81 0/1
chr1 156884365 rs749256 T C . PASS 0.9705000 0.8602000 1.0000000 0.7316000 0.9560000 0.9103000 32.2 70.0 14 110.22 17.14 35.71 0 35.71 0/1
chr1 156884584 rs56260937 C T . PASS 0.1573000 0.1628000 0.2827000 0.1730000 0.1616000 0.1873000 35.7 70.0 93 1000.00 0.98 49.46 0 49.46 0/1
chr1 156890672 rs41273221 T C . PASS 0.1604000 0.1628000 0.2847000 0.1740000 0.1616000 0.1887000 36.79 70.0 117 1000.00 5.25 47.01 0 47.86 0/1
chr1 156891504 . AA A . PASS . . . . . . 33.0 70.0 12 223.98 25.00 66.67 1 66.67 0/1
chr1 156891504 . AACACACAC AAC . PASS . . . . . . . . 11 63.89 45.45 18.18 1 63.64 0/1
chr1 156891504 rs71732184,rs72207061 AACACACAC A . PASS . . . . . . 32.25 70.0 11 63.89 45.45 36.36 1 63.64 0/1
chr1 156891505 . AC A . PASS . . . . . . 33.0 70.0 12 223.98 25.00 66.67 1 66.67 0/1
chr1 156891506 . CA C . PASS . . . . . . 33.0 70.0 12 223.98 25.00 66.67 1 66.67 0/1
chr1 156891507 . AC A . PASS . . . . . . 33.0 70.0 12 223.98 25.00 66.67 1 66.67 0/1
chr1 156891610 rs12143768 G A . PASS 0.2042000 0.1657000 0.2847000 0.1740000 0.1616000 0.2007000 34.0 70.0 10 92.51 10.00 40.00 0 40.00 0/1
chr1 156893843 . A C . PASS . . . . . . 32.2 70.0 73 113.34 134.25 13.70 0 13.70 0/1
chr1 156893847 . G C . PASS . . . . . . 35.0 70.0 72 223.91 133.33 16.67 0 16.67 0/1
chr1 156894006 rs822438 C G . PASS 0.9168000 0.7089000 0.8512000 0.5298000 0.7444000 0.7634000 37.0 67.14 23 186.55 2.48 30.43 0 30.43 0/1
chr1 156894363 . A C . PASS . . . . . . 34.6 70.0 32 63.90 168.75 15.62 0 15.62 0/1
chr1 156894367 . G C . PASS . . . . . . 37.0 70.0 34 111.66 158.82 17.65 0 17.65 0/1
chr1 156894613 rs12117221 G T . PASS 0.1899000 0.1643000 0.2847000 0.1720000 0.1616000 0.1963000 35.5 70.0 15 240.38 8.33 53.33 0 53.33 0/1
chr1 156894825 rs72698699 C T . PASS 0.1929000 0.1816000 0.3135000 0.1928000 0.2188000 0.2206000 35.98 70.0 96 1000.00 6.47 48.96 0 48.96 0/1
chr1 156899288 rs11264584 G A . PASS 0.1921000 0.1628000 0.2867000 0.1720000 0.1616000 0.1971000 35.43 70.0 54 729.69 15.46 42.59 0 42.59 0/1
chr1 156899592 rs822427 A G . PASS 0.4592000 0.2133000 0.3343000 0.1928000 0.2239000 0.3005000 36.59 70.0 45 1000.00 1.38 64.44 0 64.44 0/1
chr1 156901888 rs822429 T C . PASS 0.5212000 0.2147000 0.3343000 0.1948000 0.2290000 0.3185000 37.0 70.0 32 664.85 4.93 59.38 0 59.38 0/1
chr1 156902222 rs12119908 G A . PASS 0.1936000 0.1643000 0.2907000 0.1740000 0.1656000 0.1997000 37.0 70.0 74 1000.00 1.43 45.95 0 45.95 0/1
chr1 156902259 rs822430 G A . PASS 0.8880000 0.7061000 0.8492000 0.5318000 0.7413000 0.7548000 37.0 70.0 116 1000.00 3.96 40.52 0 40.52 0/1
chr1 156902281 rs822431 T G . PASS 0.4470000 0.2997000 0.2917000 0.1750000 0.1513000 0.2829000 36.48 70.0 116 1000.00 0.00 39.66 0 39.66 0/1
chr1 156906881 rs2275198 G A . PASS 0.1641000 0.1628000 0.2867000 0.1740000 0.1656000 0.1909000 36.48 70.0 45 780.79 2.13 51.11 0 51.11 0/1
chr1 156906910 rs868187 C T . PASS 0.5121000 0.2176000 0.3343000 0.1958000 0.2280000 0.3165000 37.0 70.0 31 500.78 10.75 48.39 0 48.39 0/1
chr1 156907031 rs4570419 C T . PASS . . . . . . 35.84 70.0 69 1000.00 8.23 44.93 0 44.93 0/1
chr1 156907081 rs945508 T C . PASS 0.8880000 0.7233000 0.8512000 0.5517000 0.7454000 0.7624000 36.49 70.0 83 1000.00 8.87 56.63 0 56.63 0/1
chr1 156909303 rs3818807 T A . PASS 0.1929000 0.1643000 0.2867000 0.1740000 0.1656000 0.1987000 36.54 69.23 50 886.90 15.08 52.00 0 52.00 0/1
chr1 156909695 rs2275199 G A . PASS 0.1634000 0.1628000 0.2867000 0.1740000 0.1656000 0.1907000 37.0 70.0 47 577.93 3.07 38.30 0 38.30 0/1
chr1 156914070 rs16837807 C A . PASS 0.3003000 0.2003000 0.3343000 0.1948000 0.2280000 0.2580000 37.0 70.0 17 329.91 14.12 58.82 0 58.82 0/1
chr1 156914240 rs112088642,rs71669293,rs72328716,rs59862718 CCATTCATT C . PASS 0.5015000 0.5086000 0.5010000 0.3638000 0.5307000 0.4804000 36.5 70.0 24 365.93 8.33 50.00 0 50.00 0/1
chr1 156915038 rs2275201 C T . PASS 0.6536000 0.2205000 0.3343000 0.1948000 0.2280000 0.3540000 37.0 70.0 40 724.31 3.33 52.50 0 52.50 0/1
chr1 156916640 rs3831269,rs111988963 G GCCTATCCCTT . PASS 0.6573000 0.2233000 0.3343000 0.1948000 0.2301000 0.3558000 36.33 70.0 17 263.70 18.30 52.94 0 52.94 0/1
chr1 156925435 rs2275204 T C . PASS 0.2700000 0.1758000 0.2867000 0.1750000 0.1708000 0.2218000 37.0 70.0 21 489.10 0.00 66.67 0 66.67 0/1
chr1 156928776 rs1572409 A T . PASS 0.2610000 0.1715000 0.2857000 0.1740000 0.1769000 0.2196000 37.0 70.0 39 639.63 1.89 48.72 0 48.72 0/1
chr1 156930101 rs72700711 C T . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0010000 0.0003994 37.0 70.0 29 548.57 6.03 55.17 0 55.17 0/1
chr1 156939067 rs2275206 G A . PASS 0.1483000 0.1628000 0.2669000 0.1750000 0.1718000 0.1841000 37.0 70.0 63 1000.00 1.64 49.21 0 49.21 0/1
chr1 156939175 rs1336149 C T . PASS 0.8207000 0.6700000 0.8353000 0.4891000 0.7137000 0.7153000 35.67 70.0 19 274.26 26.90 47.37 0 47.37 0/1
chr1 156946898 rs1006168 T G . PASS 0.2466000 0.1671000 0.2956000 0.1759000 0.1759000 0.2175000 37.0 70.0 18 285.13 0.00 50.00 0 50.00 0/1
chr1 156947928 rs16837897 T C . PASS 0.2436000 0.1671000 0.2956000 0.1759000 0.1759000 0.2167000 36.37 70.0 37 637.79 9.10 51.35 0 51.35 0/1
chr1 156947953 rs12141806 A T . PASS 0.1944000 0.1643000 0.2946000 0.1759000 0.1708000 0.2021000 37.0 70.0 67 1000.00 12.87 47.76 0 47.76 0/1
chr1 156954267 rs6427339 C T . PASS 0.7027000 0.5375000 0.7798000 0.3926000 0.4918000 0.5919000 37.0 70.0 22 68.39 4.55 18.18 0 18.18 0/1
chr1 157028990 rs866605 T C . PASS 0.8729000 0.9697000 0.9980000 0.9115000 0.9376000 0.9319000 36.0 69.88 24 942.98 0.00 100.00 0 100.00 1/1
chr1 157029199 rs11264607 A G . PASS 0.0287000 0.1556000 0.2798000 0.1740000 0.1646000 0.1526000 36.14 70.0 39 422.92 10.62 35.90 0 35.90 0/1
chr1 157043044 rs2316334 T C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 37.0 69.79 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 157043172 rs34834514,rs142051288 G GGCA . PASS . . . . . . 37.0 70.0 23 417.73 3.34 56.52 0 56.52 0/1
chr1 157043491 rs11264609 A G . PASS 0.3979000 0.4914000 0.2867000 0.6282000 0.5716000 0.4687000 37.0 68.38 23 441.31 1.34 56.52 0 56.52 0/1
chr1 157043732 rs56389633 A G . PASS 0.2572000 0.4280000 0.2540000 0.5159000 0.4601000 0.3718000 36.2 69.93 33 482.75 15.76 45.45 0 45.45 0/1
chr1 157043989 rs140355077 CCG C . PASS 0.3116000 0.4568000 0.2560000 0.6044000 0.5204000 0.4201000 37.0 70.0 41 255.27 2.93 24.39 0 24.39 0/1
chr1 157062364 rs1176536 G A . PASS 0.0431000 0.2493000 0.2391000 0.3698000 0.2035000 0.2081000 37.0 70.0 27 471.05 7.94 51.85 0 51.85 0/1
chr1 157062696 rs1176537 G T . PASS 0.0908000 0.2637000 0.2381000 0.3728000 0.2076000 0.2238000 36.45 70.0 56 701.77 1.62 39.29 0 39.29 0/1
chr1 157068533 rs12083811 G A . PASS 0.0234000 0.0144000 0.0000000 0.0288000 0.0031000 0.0145770 36.49 70.0 91 1000.00 7.62 51.65 0 51.65 0/1
chr1 157079130 rs1176529 G A . PASS 0.3903000 0.5173000 0.3532000 0.5646000 0.4294000 0.4431000 36.67 69.81 108 1000.00 0.00 100.00 0 100.00 1/1
chr1 157369715 rs6686786 C T . PASS 0.3162000 0.6167000 0.5129000 0.5547000 0.5204000 0.4852000 36.67 64.54 164 1000.00 4.34 43.90 0 43.90 0/1
chr1 157369744 rs4971196 G A . PASS 0.3162000 0.6167000 0.5129000 0.5547000 0.5204000 0.4852000 36.61 64.13 143 1000.00 1.67 43.36 0 43.36 0/1
chr1 157369792 rs6427375 A G . PASS 0.8230000 0.8458000 0.9683000 0.7167000 0.9151000 0.8520000 36.14 64.24 88 1000.00 0.87 47.73 0 47.73 0/1
chr1 157369882 rs6686904 C T . PASS 0.6619000 0.8141000 0.9187000 0.6700000 0.8701000 0.7770000 37.0 69.0 17 375.83 0.00 64.71 0 64.71 0/1
chr1 157485561 rs3811035 G A . PASS 0.0900000 0.6484000 0.6558000 0.6252000 0.6840000 0.5048000 35.05 69.77 86 1000.00 0.00 100.00 0 100.00 1/1
chr1 157485720 rs1002967 T C . PASS 0.8805000 0.9928000 1.0000000 1.0000000 1.0000000 0.9675000 37.0 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 157490710 rs6696309 G A . PASS 0.1241000 0.6470000 0.8244000 0.6153000 0.6953000 0.5477000 37.0 68.89 18 716.39 0.00 100.00 0 100.00 1/1
chr1 157508801 rs1972239 C T . PASS 0.6157000 0.8314000 0.8780000 0.8658000 0.9264000 0.8093000 36.48 70.0 23 913.22 0.00 100.00 0 100.00 1/1
chr1 157508882 rs6427384 C T . PASS 0.3222000 0.8098000 0.7887000 0.8539000 0.8487000 0.6933000 36.17 69.95 87 1000.00 0.00 100.00 0 100.00 1/1
chr1 157509025 rs2012199 C T . PASS 0.7345000 0.8357000 0.8780000 0.8648000 0.9264000 0.8411000 36.7 70.0 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 157514097 rs6679793 A G . PASS 0.4115000 0.7334000 0.9067000 0.8221000 0.7648000 0.7073000 36.6 70.0 91 1000.00 0.00 100.00 0 100.00 1/1
chr1 157550066 rs10489673 T C . PASS 0.0318000 0.5159000 0.6190000 0.3817000 0.5194000 0.3826000 36.33 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 157557701 rs2777962 G A . PASS 0.3623000 0.5375000 0.6806000 0.4284000 0.5389000 0.4984000 36.38 70.0 77 1000.00 0.00 100.00 0 100.00 1/1
chr1 157559122 rs11582663 C T . PASS 0.0045000 0.0692000 0.0010000 0.1581000 0.0204000 0.0467000 36.62 69.69 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 157567751 rs1361889 A G . PASS 0.6694000 0.8501000 0.9008000 0.7823000 0.8354000 0.7961000 36.81 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 157599858 rs2777997 C T . PASS 0.4697000 0.5461000 0.7034000 0.4394000 0.5675000 0.5403000 35.91 70.0 11 411.98 0.00 100.00 0 100.00 1/1
chr1 157599917 rs2758629 A G . PASS 0.4107000 0.5432000 0.7034000 0.4384000 0.5654000 0.5238000 37.0 70.0 16 632.84 0.00 100.00 0 100.00 1/1
chr1 157599937 rs2777998 T A . PASS 0.4107000 0.5418000 0.7034000 0.4394000 0.5654000 0.5238000 37.0 70.0 19 754.01 0.00 100.00 0 100.00 1/1
chr1 157606064 rs2758695 C T . PASS 0.8767000 0.7378000 0.8165000 0.6700000 0.7249000 0.7742000 35.74 70.0 19 734.13 0.00 100.00 0 100.00 1/1
chr1 157606294 rs2248138 T A . PASS 0.8767000 0.7378000 0.8165000 0.6700000 0.7260000 0.7744000 36.2 69.8 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 157739631 rs56360917 C T . PASS 0.0015000 0.0072000 0.0000000 0.0119000 0.0010000 0.0039936 36.37 67.89 37 637.79 7.68 51.35 0 51.35 0/1
chr1 157771880 rs4971154 C T . PASS 0.0643000 0.5072000 0.5238000 0.4930000 0.5010000 0.3896000 36.59 69.77 87 1000.00 0.00 100.00 0 100.00 1/1
chr1 157802979 rs2261295 C T . PASS 0.8427000 0.7622000 0.8095000 0.7197000 0.8620000 0.8039000 36.61 70.0 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 157811392 rs2260040 G A . PASS 0.7912000 0.7522000 0.8095000 0.7187000 0.8620000 0.7887000 35.86 69.05 21 817.67 0.00 100.00 0 100.00 1/1
chr1 157894797 rs3923515 T C . PASS 0.8994000 0.8545000 0.9147000 0.6859000 0.7382000 0.8219000 37.0 70.0 30 670.87 0.35 63.33 0 63.33 0/1
chr1 157922669 . CG CGA . PASS . . . . . . . . 20 107.15 10.00 30.00 1 45.00 0/1
chr1 157922670 . G A . PASS . . . . . . 37.0 70.0 23 107.15 156.52 21.74 1 21.74 0/1
chr1 158056299 rs7367384 C G . PASS 0.0825000 0.5591000 0.7609000 0.4384000 0.4325000 0.4249000 36.57 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 158056651 rs7364493 A G . PASS 0.1536000 0.6671000 0.7411000 0.6531000 0.5072000 0.5124000 36.0 70.0 12 453.75 0.00 100.00 0 100.00 1/1
chr1 158058109 rs6427419 C A . PASS 0.0257000 0.5836000 0.6974000 0.5149000 0.6196000 0.4525000 36.22 70.0 77 1000.00 0.00 100.00 0 100.00 1/1
chr1 158146946 rs3021477 T C . PASS 0.7844000 0.7579000 0.8482000 0.5964000 0.6401000 0.7276000 37.0 69.4 46 664.48 15.65 43.48 0 43.48 0/1
chr1 158153996 rs426336 T C . PASS 0.9758000 1.0000000 1.0000000 1.0000000 1.0000000 0.9936000 36.68 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 158165661 rs382436 T C . PASS 0.5930000 0.8012000 0.9276000 0.9652000 0.9029000 0.8245000 37.0 69.75 12 465.77 0.00 100.00 0 100.00 1/1
chr1 158165722 rs1633129 G A . PASS 0.3185000 0.3213000 0.6071000 0.4443000 0.6769000 0.4722000 37.0 69.48 31 751.40 5.22 67.74 0 67.74 0/1
chr1 158165742 rs1633130 A T . PASS 0.3185000 0.3213000 0.6071000 0.4443000 0.6769000 0.4722000 35.96 69.43 33 800.75 10.80 69.70 0 69.70 0/1
chr1 158165938 rs1633131 A C . PASS 0.3185000 0.3213000 0.6071000 0.4443000 0.6769000 0.4722000 35.67 70.0 18 273.12 22.22 50.00 0 50.00 0/1
chr1 158166831 rs1633134 A C . PASS 0.3185000 0.3213000 0.6071000 0.4443000 0.6769000 0.4722000 35.5 70.0 39 490.30 12.82 41.03 0 41.03 0/1
chr1 158224575 . CT C . PASS . . . . . . 36.14 70.0 16 196.20 17.86 43.75 1 43.75 0/1
chr1 158224575 . CTGTGTG CTGTG . PASS . . . . . . . . 15 70.89 80.00 6.67 1 40.00 0/1
chr1 158224575 rs200343605 CTGTGTG C . PASS . . . . . . 35.5 70.0 15 70.89 20.00 26.67 1 40.00 0/1
chr1 158224576 . TG T . PASS . . . . . . 36.14 70.0 16 196.20 17.86 43.75 1 43.75 0/1
chr1 158224577 . GT G . PASS . . . . . . 36.0 70.0 16 154.43 8.33 37.50 1 37.50 0/1
chr1 158224578 . TG T . PASS . . . . . . 36.0 70.0 16 154.43 8.33 37.50 1 37.50 0/1
chr1 158424637 rs1844787 A C . PASS 0.9622000 0.7954000 0.8829000 0.9195000 0.8681000 0.8962000 36.66 70.0 66 1000.00 5.89 53.03 0 53.03 0/1
chr1 158495244 . C A . PASS . . . . . . 37.0 70.0 26 52.20 23.08 15.38 0 15.38 0/1
chr1 158548788 rs72698782 A G . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 36.29 70.0 77 1000.00 0.61 44.16 0 44.16 0/1
chr1 158577167 rs2427808 A T . PASS 0.0461000 0.0980000 0.0794000 0.1332000 0.2096000 0.1094000 37.0 70.0 37 478.56 9.37 40.54 0 40.54 0/1
chr1 158587784 rs857717 T G . PASS 0.9992000 1.0000000 1.0000000 1.0000000 1.0000000 0.9998000 37.0 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 158597309 rs12044097 A G . PASS 0.0076000 0.2795000 0.2817000 0.1640000 0.2853000 0.1861000 37.0 70.0 11 59.73 36.36 27.27 0 27.27 0/1
chr1 158607788 rs2518492 T G . PASS 0.9992000 1.0000000 1.0000000 1.0000000 1.0000000 0.9998000 37.0 70.0 20 795.78 0.00 100.00 0 100.00 1/1
chr1 158619728 rs2482965 A C . PASS 0.9796000 1.0000000 1.0000000 1.0000000 1.0000000 0.9946000 36.14 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 158639601 rs2298801 A G . PASS 0.2791000 0.5000000 0.3383000 0.4612000 0.3763000 0.3772000 35.17 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 158644105 rs703116 T A . PASS 0.0900000 0.4323000 0.4177000 0.3767000 0.5675000 0.3542000 36.57 70.0 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 158647495 rs325996 A T . PASS 0.8442000 0.9914000 1.0000000 0.9960000 1.0000000 0.9569000 36.68 69.73 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 158647631 rs325995 T A . PASS 0.8442000 0.9914000 1.0000000 0.9960000 1.0000000 0.9569000 36.57 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 158654786 rs385096 C T . PASS 0.8880000 0.9957000 1.0000000 1.0000000 1.0000000 0.9698000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 158655036 rs435080 G A . PASS 0.8880000 0.9957000 1.0000000 1.0000000 1.0000000 0.9698000 36.31 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 158655162 rs2564859 C A . PASS 0.8880000 0.9957000 1.0000000 1.0000000 1.0000000 0.9698000 36.47 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 158656281 rs2564858 T C . PASS 0.8880000 0.9957000 1.0000000 1.0000000 1.0000000 0.9698000 36.69 69.49 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 158656347 rs111674514,rs60465109 C CAGAG . PASS . . . . . . 36.2 69.59 52 1000.00 1.72 90.38 0 96.15 1/1
chr1 158735595 rs857824 C T . PASS 0.7784000 0.7839000 0.6171000 0.7217000 0.4335000 0.6679000 36.74 70.0 47 1000.00 2.13 97.87 0 97.87 1/1
chr1 158735691 rs857825 T C . PASS 0.7784000 0.7839000 0.6171000 0.7217000 0.4335000 0.6679000 36.74 69.13 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 158735740 rs857826 A G . PASS 0.7784000 0.7839000 0.6171000 0.7217000 0.4335000 0.6679000 36.52 69.47 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 158735892 rs857827 A G . PASS 0.7784000 0.7839000 0.6171000 0.7217000 0.4335000 0.6679000 36.69 70.0 77 1000.00 0.00 100.00 0 100.00 1/1
chr1 158736215 rs6666753 G A . PASS 0.7300000 0.9308000 0.9087000 0.9473000 0.6022000 0.8125000 36.46 69.7 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 158736445 rs1864346 C T . PASS 0.0182000 0.3314000 0.4246000 0.3340000 0.2198000 0.2462000 36.71 70.0 82 1000.00 0.00 100.00 0 100.00 1/1
chr1 158736517 rs1864347 A T . PASS 0.0182000 0.3314000 0.4246000 0.3340000 0.2198000 0.2462000 36.7 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 158813819 rs857870 A G . PASS 0.3071000 0.5447000 0.6954000 0.5825000 0.5869000 0.5282000 36.21 70.0 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 158819324 rs2261161 G C . PASS 0.3646000 0.5533000 0.6954000 0.5815000 0.5869000 0.5443000 37.0 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 158848721 rs2427820 T G . PASS 0.7027000 0.8429000 0.9623000 0.7396000 0.7076000 0.7827000 37.0 70.0 14 545.15 0.00 100.00 0 100.00 1/1
chr1 158909164 rs2325704 C A . PASS 0.7602000 0.8271000 0.8522000 0.7734000 0.7965000 0.7977000 37.0 70.0 10 58.59 0.00 30.00 0 30.00 0/1
chr1 158913525 rs856082 A G . PASS 0.7073000 0.9625000 1.0000000 0.9970000 1.0000000 0.9169000 35.8 70.0 10 370.22 0.00 100.00 0 100.00 1/1
chr1 158913532 rs4656498 C T . PASS 0.1120000 0.3948000 0.5030000 0.4751000 0.4356000 0.3660000 35.91 70.0 11 411.98 0.00 100.00 0 100.00 1/1
chr1 158943382 rs12071136 C A . PASS 0.6800000 0.2507000 0.0913000 0.1531000 0.0971000 0.2823000 34.75 70.0 25 520.43 15.50 64.00 0 64.00 0/1
chr1 158985652 rs4262539 T C . PASS 0.1135000 0.0764000 0.0000000 0.0895000 0.0644000 0.0711000 37.0 70.0 52 1000.00 10.34 55.77 0 55.77 0/1
chr1 158985831 rs66519738 C T . PASS 0.0280000 0.0706000 0.0000000 0.0885000 0.0644000 0.0475000 36.08 70.0 36 390.17 16.24 36.11 0 36.11 0/1
chr1 158986477 rs866484 G C . PASS 0.4123000 0.8444000 0.5933000 0.7853000 0.6820000 0.6362000 36.74 70.0 84 1000.00 5.90 54.76 0 54.76 0/1
chr1 158986561 rs16841500 C T . PASS 0.0038000 0.0562000 0.0000000 0.0616000 0.0143000 0.0240000 37.0 70.0 25 435.29 9.23 52.00 0 52.00 0/1
chr1 158988270 rs11539423 T C . PASS 0.0174000 0.0591000 0.0000000 0.0636000 0.0164000 0.0288000 36.31 70.0 61 1000.00 11.05 57.38 0 57.38 0/1
chr1 159002301 rs2518553 T C . PASS 0.3192000 0.8689000 0.5873000 0.8380000 0.7117000 0.6302000 37.0 70.0 26 390.51 3.85 46.15 0 46.15 0/1
chr1 159002377 rs1057027 C A . PASS 0.3207000 0.8689000 0.5883000 0.8380000 0.7127000 0.6310000 37.0 70.0 73 1000.00 0.60 43.84 0 46.58 0/1
chr1 159002389 rs1057028 T A . PASS 0.3207000 0.8689000 0.5873000 0.8380000 0.7127000 0.6308000 36.1 70.0 85 1000.00 7.94 47.06 0 47.06 0/1
chr1 159002557 rs1633256 A G . PASS 0.3162000 0.8689000 0.5893000 0.8390000 0.7106000 0.6298000 37.0 70.0 16 295.30 5.56 56.25 0 56.25 0/1
chr1 159002577 rs58508050,rs147007436 TGGATTG T . PASS 0.3154000 0.8689000 0.5893000 0.8390000 0.7096000 0.6294000 37.0 70.0 12 214.24 0.00 58.33 0 58.33 0/1
chr1 159019515 rs56016614 T A . PASS 0.0953000 0.0490000 0.0000000 0.0447000 0.0102000 0.0429000 34.6 69.8 10 130.13 0.00 50.00 0 50.00 0/1
chr1 159021506 rs62621173 C T . PASS 0.0121000 0.0432000 0.0000000 0.0417000 0.0102000 0.0195690 35.56 70.0 56 807.20 1.29 44.64 0 44.64 0/1
chr1 159169641 rs862999 T C . PASS 0.9123000 0.7205000 0.9276000 0.7425000 0.7914000 0.8311000 36.54 70.0 55 876.01 1.82 47.27 0 47.27 0/1
chr1 159174824 rs863001 G C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.74 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 159174885 rs7550207 T C . PASS 0.1044000 0.1931000 0.0000000 0.2445000 0.0736000 0.1178000 37.0 70.0 14 176.01 0.00 42.86 0 42.86 0/1
chr1 159175354 rs12075 G A . PASS 0.9811000 0.5389000 0.0774000 0.6024000 0.3599000 0.5405000 36.22 70.0 97 1000.00 1.03 47.42 0 47.42 0/1
chr1 159182095 rs3027045 C T . PASS 0.6384000 0.4539000 0.4702000 0.3668000 0.3916000 0.4762000 36.14 70.0 87 851.21 8.29 32.18 0 32.18 0/1
chr1 159402584 rs11419544 G GT . PASS 0.6884000 0.9640000 1.0000000 0.9761000 0.9857000 0.9052000 36.2 70.0 83 1000.00 0.00 100.00 0 100.00 1/1
chr1 159402695 rs4491058 A C . PASS 0.7088000 0.9669000 1.0000000 0.9761000 0.9857000 0.9109000 36.59 69.66 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 159409533 rs10908721 G A . PASS 0.7088000 0.9654000 1.0000000 0.9761000 0.9857000 0.9107000 36.52 70.0 25 996.76 0.00 100.00 0 100.00 1/1
chr1 159409734 rs10908722 G T . PASS 0.9569000 0.9971000 1.0000000 1.0000000 1.0000000 0.9882000 36.54 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 159409857 rs12048482 A G . PASS 0.4297000 0.5101000 0.2381000 0.6471000 0.6022000 0.4796000 37.0 70.0 55 971.56 1.95 50.91 0 50.91 0/1
chr1 159410340 rs12409540 T A . PASS 0.0265000 0.1571000 0.0278000 0.1322000 0.1207000 0.0845000 37.0 70.0 50 982.47 7.14 56.00 0 56.00 0/1
chr1 159505101 rs35393723 G A . PASS 0.0257000 0.1556000 0.0248000 0.1869000 0.1411000 0.0984000 36.67 70.0 83 1000.00 8.23 43.37 0 43.37 0/1
chr1 159505297 rs4656837 C T . PASS 0.2943000 0.6614000 0.4940000 0.6948000 0.7403000 0.5529000 36.54 69.62 101 1000.00 0.99 51.49 0 51.49 0/1
chr1 159652939 rs2592887 C T . PASS 0.5000000 0.4265000 0.5645000 0.3917000 0.3548000 0.4527000 36.17 70.0 68 950.18 11.36 42.65 0 42.65 0/1
chr1 159750802 rs3806189 G C . PASS 0.0673000 0.2464000 0.1210000 0.1710000 0.1217000 0.1344000 37.0 70.0 22 356.64 9.09 50.00 0 50.00 0/1
chr1 159776366 rs61821626 G A . PASS 0.0348000 0.0850000 0.0149000 0.1382000 0.0613000 0.0637000 37.0 68.46 25 435.30 11.69 52.00 0 52.00 0/1
chr1 159778910 rs72700615 G A . PASS 0.0371000 0.0850000 0.0149000 0.1392000 0.0603000 0.0643000 36.5 68.83 54 795.47 2.78 44.44 0 44.44 0/1
chr1 159778983 rs12083967 T C . PASS 0.5265000 0.2363000 0.1855000 0.1998000 0.1145000 0.2716000 37.0 68.92 52 855.28 7.54 48.08 0 48.08 0/1
chr1 159784141 rs61821659 G A . PASS 0.0204000 0.0836000 0.0149000 0.1402000 0.0665000 0.0611000 37.0 70.0 19 202.73 19.55 36.84 0 36.84 0/1
chr1 159784160 rs61823160 T C . PASS 0.0083000 0.0836000 0.0149000 0.1412000 0.0654000 0.0579000 37.0 70.0 13 220.79 8.79 53.85 0 53.85 0/1
chr1 159785284 rs4411129 C G . PASS 0.9614000 0.8184000 0.7867000 0.6948000 0.6687000 0.7957000 36.75 70.0 90 1000.00 2.50 53.33 0 53.33 0/1
chr1 159785413 rs61823162 C T . PASS 0.0076000 0.0836000 0.0149000 0.1402000 0.0665000 0.0577000 36.52 70.0 70 789.08 0.57 35.71 0 35.71 0/1
chr1 159785425 rs4443889 A G . PASS 0.4622000 0.2334000 0.1716000 0.2018000 0.1217000 0.2532000 36.54 70.0 67 839.88 5.74 38.81 0 38.81 0/1
chr1 159785477 rs61823163 G A . PASS 0.0204000 0.0850000 0.0149000 0.1402000 0.0665000 0.0613000 37.0 70.0 35 446.97 2.86 40.00 0 40.00 0/1
chr1 159785518 rs61823164 G C . PASS 0.0204000 0.0836000 0.0149000 0.1412000 0.0665000 0.0613000 37.0 70.0 14 171.86 14.29 42.86 0 42.86 0/1
chr1 159799599 rs11422063 C CA . PASS 0.9894000 0.8689000 0.8274000 0.8191000 0.8395000 0.8766000 36.39 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 159824967 rs2501340 G C . PASS 0.9939000 0.9063000 0.9474000 0.8598000 0.9202000 0.9311000 36.8 69.67 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 159825004 rs72700643 C G . PASS 0.0015000 0.0014000 0.0000000 0.0050000 0.0000000 0.0015974 37.0 69.43 73 1000.00 1.96 47.95 0 47.95 0/1
chr1 159825061 rs2501339 G C . PASS 0.9667000 0.4568000 0.6161000 0.4433000 0.5164000 0.6324000 36.43 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 159826561 rs111861505 C CCA . PASS . . . . . . 35.5 70.0 10 265.89 2.22 90.00 0 90.00 0/1
chr1 159827456 rs2494503 A G . PASS 0.5590000 0.7550000 0.7192000 0.6730000 0.6616000 0.6613000 37.0 70.0 13 137.25 18.46 38.46 0 38.46 0/1
chr1 159827475 rs11584200 G A . PASS 0.5166000 0.3012000 0.3800000 0.2584000 0.2679000 0.3588000 36.25 70.0 29 536.56 0.86 55.17 0 55.17 0/1
chr1 159828128 rs2494504 A G . PASS 0.9955000 0.8905000 0.9504000 0.8608000 0.9233000 0.9307000 36.57 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 159828746 rs2501337 G A . PASS 0.4713000 0.7493000 0.7450000 0.6799000 0.6360000 0.6390000 37.0 70.0 27 512.81 14.81 55.56 0 55.56 0/1
chr1 159842691 rs4460634 C G . PASS 0.3321000 0.7075000 0.7887000 0.6640000 0.6718000 0.6090000 37.0 70.0 17 413.45 19.61 70.59 0 70.59 0/1
chr1 159854251 rs16842789 T C . PASS 0.2284000 0.0591000 0.0556000 0.0666000 0.0583000 0.1044000 37.0 70.0 60 1000.00 9.70 55.00 0 55.00 0/1
chr1 159854392 rs2501325 C A . PASS 0.8343000 0.8228000 0.8433000 0.7604000 0.7403000 0.8013000 37.0 70.0 25 1000.00 0.00 100.00 0 100.00 1/1
chr1 159858290 rs3795334 T A . PASS 0.3321000 0.0850000 0.0556000 0.0835000 0.0634000 0.1398000 37.0 70.0 22 273.09 6.06 40.91 0 40.91 0/1
chr1 159860259 rs2501320 G A . PASS 0.0643000 0.1931000 0.2173000 0.3559000 0.1544000 0.1891000 36.23 70.0 57 1000.00 10.19 54.39 0 54.39 0/1
chr1 159889686 rs2252815 G A . PASS 0.3797000 0.6282000 0.6419000 0.5109000 0.4683000 0.5106000 37.0 70.0 28 509.80 8.57 53.57 0 53.57 0/1
chr1 159897126 rs13052 C T . PASS 0.7663000 0.6268000 0.7143000 0.5547000 0.6299000 0.6673000 35.93 69.64 125 1000.00 4.00 44.80 0 44.80 0/1
chr1 159897388 rs1934074 C T . PASS 0.2859000 0.3804000 0.4444000 0.3698000 0.4499000 0.3798000 37.0 70.0 14 301.32 9.52 64.29 0 64.29 0/1
chr1 159897681 rs60386431 TA T . PASS . . . . . . 34.53 70.0 38 1000.00 0.00 94.74 0 94.74 1/1
chr1 159898100 rs3747615 A G . PASS 0.3646000 0.5403000 0.6528000 0.4453000 0.5613000 0.5016000 35.8 70.0 31 685.61 0.32 64.52 0 64.52 0/1
chr1 159902526 rs3827531 T C . PASS 0.7632000 0.6383000 0.7113000 0.5547000 0.6380000 0.6691000 37.0 70.0 24 480.07 11.90 58.33 0 58.33 0/1
chr1 159906156 rs10908750 A G . PASS 0.1543000 0.3646000 0.4613000 0.3509000 0.3722000 0.3273000 37.0 70.0 55 1000.00 2.84 58.18 0 58.18 0/1
chr1 159907362 rs7524321 A G . PASS 0.4160000 0.4092000 0.4643000 0.4016000 0.4029000 0.4193000 36.47 70.0 104 1000.00 2.69 43.27 0 43.27 0/1
chr1 159907367 rs7526647 T C . PASS 0.4191000 0.4092000 0.4653000 0.4016000 0.4029000 0.4203000 37.0 70.0 107 1000.00 4.97 41.12 0 41.12 0/1
chr1 159923111 rs2789417 T G . PASS 0.7474000 0.9409000 1.0000000 0.8966000 0.9274000 0.8902000 36.38 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 160000435 rs12409352 A T . PASS 0.0091000 0.1182000 0.0357000 0.1292000 0.0828000 0.0681000 36.74 70.0 77 1000.00 5.65 59.74 0 59.74 0/1
chr1 160062340 rs41265757 G A . PASS 0.0091000 0.1643000 0.1786000 0.1004000 0.0685000 0.0946000 36.48 70.0 66 1000.00 3.56 69.70 0 69.70 0/1
chr1 160062472 rs2295622 C T . PASS 0.0189000 0.2507000 0.2252000 0.1869000 0.1636000 0.1546000 36.64 69.8 101 1000.00 0.00 100.00 0 100.00 1/1
chr1 160062727 rs2295621 A G . PASS 0.0287000 0.2522000 0.2232000 0.1879000 0.1769000 0.1597000 36.62 70.0 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 160090674 rs2854246 T C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 37.0 69.35 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 160090681 rs67915591,rs373796693 CCCTT C . PASS 0.3707000 0.9078000 0.8472000 0.8439000 0.6431000 0.6893000 35.2 69.43 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 160093222 rs2820581 C T . PASS 0.7995000 0.9827000 1.0000000 0.9970000 0.9918000 0.9425000 36.87 70.0 92 1000.00 0.00 100.00 0 100.00 1/1
chr1 160093648 rs41265763 G A . PASS 0.0076000 0.1153000 0.1379000 0.1342000 0.0706000 0.0865000 37.0 68.18 17 375.83 2.14 64.71 0 64.71 0/1
chr1 160093911 rs2820582 T C . PASS 0.8419000 0.9885000 1.0000000 0.9980000 0.9918000 0.9547000 37.0 69.0 20 799.93 0.00 100.00 0 100.00 1/1
chr1 160093927 rs2854248 T A . PASS 0.4758000 0.4755000 0.4732000 0.3638000 0.2423000 0.4071000 37.0 70.0 13 216.64 10.99 53.85 0 53.85 0/1
chr1 160095127 rs7548116 T A . PASS 0.4766000 0.5144000 0.5228000 0.6282000 0.7638000 0.5777000 37.0 70.0 12 136.11 0.00 41.67 0 41.67 0/1
chr1 160097315 rs2295623 C A . PASS 0.0091000 0.1095000 0.1409000 0.1233000 0.0552000 0.0815000 36.72 70.0 90 1000.00 6.56 47.78 0 47.78 0/1
chr1 160097666 rs6695366 G A . PASS 0.9418000 0.7190000 0.6637000 0.8350000 0.8487000 0.8153000 35.91 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 160098927 rs5778151 A AG . PASS 0.7239000 0.7233000 0.6677000 0.8628000 0.8609000 0.7672000 36.7 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 160100201 rs17846713 C G . PASS 0.0023000 0.0202000 0.0000000 0.0467000 0.0112000 0.0149760 37.0 70.0 50 857.14 4.00 50.00 0 50.00 0/1
chr1 160121746 rs746362 C T . PASS 0.1316000 0.2738000 0.3125000 0.3012000 0.3804000 0.2704000 37.0 70.0 12 265.57 16.67 66.67 0 66.67 0/1
chr1 160124875 rs6427504 G A . PASS 0.7458000 0.7104000 0.6835000 0.6958000 0.6166000 0.6931000 36.74 70.0 83 1000.00 6.31 56.63 0 56.63 0/1
chr1 160128994 rs10908764 C T . PASS 0.7474000 0.9006000 0.9950000 0.8539000 0.8957000 0.8688000 36.62 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 160134205 rs11265338 C T . PASS 0.3570000 0.6758000 0.5417000 0.6421000 0.5266000 0.5288000 37.0 68.97 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 160136350 rs7529215 G A . PASS 0.2806000 0.5375000 0.4851000 0.5457000 0.5757000 0.4683000 36.44 69.09 88 1000.00 7.29 48.86 0 48.86 0/1
chr1 160137300 rs4656889 A C . PASS 0.7042000 0.6081000 0.5268000 0.5318000 0.4836000 0.5775000 37.0 70.0 27 383.35 20.37 44.44 0 44.44 0/1
chr1 160141196 rs625549 C T . PASS 0.9758000 0.9957000 1.0000000 1.0000000 1.0000000 0.9930000 36.73 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 160141284 . CCC CTG . PASS . . . . . . 37.0 70.0 25 438.31 11.69 52.00 1 52.00 0/1
chr1 160141286 rs625129 C G . PASS 0.5696000 0.5648000 0.5615000 0.4891000 0.4059000 0.5192000 37.0 70.0 24 475.92 8.33 58.33 1 58.33 0/1
chr1 160141636 rs1891265 C T . PASS 0.6256000 0.4135000 0.1379000 0.5219000 0.5593000 0.4643000 35.4 70.0 20 509.87 0.00 75.00 0 75.00 0/1
chr1 160146173 rs881291 T C . PASS 0.0499000 0.2723000 0.6240000 0.3280000 0.2761000 0.2963000 37.0 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 160147502 rs731852 T G . PASS 0.8374000 0.7867000 0.8810000 0.6730000 0.7372000 0.7865000 35.55 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 160147510 rs731853 G A . PASS 0.0371000 0.2709000 0.6200000 0.3270000 0.2699000 0.2905000 36.61 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 160151345 rs113684338 CA C . PASS 0.5915000 0.5245000 0.6280000 0.5388000 0.5470000 0.5703000 36.4 70.0 11 336.84 0.00 90.91 0 90.91 0/1
chr1 160151421 rs11265350 G C . PASS 0.0983000 0.2723000 0.6409000 0.3250000 0.2679000 0.3103000 36.38 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 160151450 rs7519748 T C . PASS 0.8941000 0.7954000 0.8889000 0.6909000 0.7249000 0.8055000 35.5 70.0 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 160151624 rs36097870 G GC . PASS 0.6067000 0.7147000 0.8889000 0.5775000 0.6626000 0.6835000 36.65 69.81 102 1000.00 0.00 100.00 0 100.00 1/1
chr1 160156027 rs12131640 C G . PASS 0.2436000 0.3314000 0.7054000 0.3529000 0.2761000 0.3770000 35.74 70.0 19 729.98 0.00 100.00 0 100.00 1/1
chr1 160160865 rs41265773 C T . PASS 0.0008000 0.0043000 0.0000000 0.0159000 0.0041000 0.0047923 37.0 70.0 14 217.78 28.57 50.00 0 50.00 0/1
chr1 160175210 rs17551437,rs34961337 A AGCG . PASS . . . . . . 35.89 70.0 19 742.56 0.00 100.00 0 100.00 1/1
chr1 160178356 rs667306 A G . PASS 0.9644000 0.9986000 1.0000000 1.0000000 1.0000000 0.9904000 36.41 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 160236470 rs11265366 T A . PASS 0.9115000 0.5951000 0.4484000 0.5696000 0.7301000 0.6703000 36.51 68.14 123 1000.00 0.00 100.00 0 100.00 1/1
chr1 160251792 rs2795067 A G . PASS 0.9115000 0.5951000 0.4484000 0.5676000 0.7321000 0.6703000 36.21 70.0 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 160260233 rs2298104 T C . PASS 0.2224000 0.5187000 0.3264000 0.5089000 0.6350000 0.4225000 37.0 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 160263124 rs1317944 C T . PASS 0.9115000 0.5965000 0.4435000 0.5666000 0.7311000 0.6691000 36.52 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 160265515 rs3789042 T C . PASS 0.3336000 0.5245000 0.3264000 0.5109000 0.6350000 0.4531000 36.41 69.84 122 1000.00 0.89 99.18 0 100.00 1/1
chr1 160275434 rs2066320 A G . PASS 0.9985000 0.9856000 1.0000000 0.9493000 0.9519000 0.9780000 35.24 69.41 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 160302444 rs4656897 G A . PASS 0.9115000 0.5937000 0.4395000 0.5666000 0.7331000 0.6683000 35.91 70.0 23 871.45 5.93 95.65 0 100.00 1/1
chr1 160303416 rs1802778 G A . PASS 0.9100000 0.5922000 0.4395000 0.5517000 0.7229000 0.6627000 35.5 70.0 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 160309664 rs1886419 T G . PASS 0.9123000 0.5951000 0.4385000 0.5626000 0.7311000 0.6673000 36.31 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 160318940 rs6669689 A G . PASS 0.5938000 0.4899000 0.4802000 0.5378000 0.6636000 0.5589000 37.0 70.0 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 160318984 rs16831846 T C . PASS 0.1641000 0.0677000 0.0000000 0.0586000 0.0072000 0.0659000 36.33 70.0 27 626.12 3.70 66.67 0 66.67 0/1
chr1 160386082 rs17371401 A G . PASS 0.2118000 0.2075000 0.0883000 0.2545000 0.2812000 0.2085000 37.0 70.0 17 125.21 0.00 29.41 0 29.41 0/1
chr1 160393905 rs12086448 A G . PASS 0.8003000 0.4524000 0.3710000 0.4970000 0.6564000 0.5767000 36.23 70.0 73 1000.00 0.09 42.47 0 42.47 0/1
chr1 160394937 rs17380127 A C . PASS 0.1702000 0.2075000 0.0843000 0.2783000 0.3119000 0.2075000 37.0 70.0 40 553.07 0.88 42.50 0 42.50 0/1
chr1 160395003 rs17380141 G A . PASS 0.2375000 0.2190000 0.0843000 0.2793000 0.3119000 0.2270000 37.0 70.0 77 1000.00 4.03 49.35 0 49.35 0/1
chr1 160458782 rs3795327 A G . PASS 0.4841000 0.6052000 0.6230000 0.7087000 0.6984000 0.6158000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 160519812 rs3832278 C CA . PASS 0.4864000 0.2911000 0.2212000 0.3489000 0.1994000 0.3223000 37.0 70.0 23 826.12 4.74 95.65 0 95.65 1/1
chr1 160519815 rs58960001 C CT . PASS 0.4856000 0.2911000 0.2212000 0.3489000 0.1994000 0.3221000 35.91 70.0 23 790.08 4.74 95.65 0 95.65 1/1
chr1 160545284 rs5778167,rs5778168 A AAC . PASS 0.3548000 0.4510000 0.5784000 0.5239000 0.4755000 0.4706000 37.0 70.0 14 118.66 28.57 35.71 0 35.71 0/1
chr1 160650792 rs3835477 GC G . PASS 0.8812000 0.7536000 0.5972000 0.8171000 0.8742000 0.7921000 36.57 70.0 52 380.24 4.40 26.92 0 26.92 0/1
chr1 160650913 rs4656926 A G . PASS 0.3767000 0.9539000 1.0000000 0.9980000 1.0000000 0.8287000 36.91 69.85 130 1000.00 0.00 100.00 0 100.00 1/1
chr1 160722064 rs527342 A G . PASS 0.7542000 0.9640000 0.9683000 0.9771000 0.9468000 0.9087000 36.37 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 160766179 rs3831924 C CT . PASS 0.3374000 0.6599000 0.6071000 0.7197000 0.4765000 0.5403000 37.0 70.0 26 291.39 3.08 38.46 0 38.46 0/1
chr1 160771761 rs1556517 C A . PASS 0.0272000 0.3876000 0.2867000 0.2316000 0.2372000 0.2115000 36.4 70.0 34 684.44 1.18 58.82 0 58.82 0/1
chr1 160786670 rs560681 A G . PASS 0.3079000 0.3055000 0.3681000 0.2773000 0.4294000 0.3373000 37.0 70.0 21 447.33 0.73 61.90 0 61.90 0/1
chr1 160788131 rs3817407 T C . PASS 0.4206000 0.4352000 0.3373000 0.2416000 0.3517000 0.3564000 36.77 70.0 95 1000.00 5.84 55.79 0 55.79 0/1
chr1 160788217 rs575217 T A . PASS 0.2905000 0.3012000 0.3661000 0.2763000 0.4427000 0.3341000 36.25 70.0 26 541.44 0.96 61.54 0 61.54 0/1
chr1 160789196 rs537540 A C . PASS 0.9713000 1.0000000 1.0000000 1.0000000 1.0000000 0.9924000 37.0 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 160793442 rs474131 A G . PASS 0.6884000 0.6643000 0.7034000 0.4493000 0.6483000 0.6322000 36.64 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 160793560 rs509749 A G . PASS 0.7912000 0.6686000 0.7034000 0.4503000 0.6483000 0.6601000 36.63 70.0 98 1000.00 0.00 100.00 0 100.00 1/1
chr1 160793962 rs506081 G C . PASS 0.7027000 0.6643000 0.7034000 0.4493000 0.6483000 0.6360000 37.0 70.0 21 837.55 0.00 100.00 0 100.00 1/1
chr1 160797514 rs576334 C G . PASS 0.6641000 0.6628000 0.6954000 0.4672000 0.6575000 0.6294000 37.0 70.0 12 461.62 0.00 100.00 0 100.00 1/1
chr1 160797684 rs574610 A G . PASS 0.5613000 0.6571000 0.6954000 0.4672000 0.6575000 0.6014000 36.68 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 160801046 rs480104 C G . PASS 0.1725000 0.2248000 0.3760000 0.2008000 0.3282000 0.2568000 36.14 70.0 26 457.90 24.18 53.85 0 53.85 0/1
chr1 160803802 rs11265493 A G . PASS 0.3449000 0.5980000 0.4583000 0.6044000 0.5920000 0.5032000 36.4 70.0 57 1000.00 12.28 70.18 0 70.18 0/1
chr1 160848993 rs3766357 G A . PASS 0.2595000 0.6974000 0.6935000 0.6779000 0.6288000 0.5637000 37.0 70.0 13 137.25 15.38 38.46 0 38.46 0/1
chr1 160849030 rs3766358 T A . PASS 0.3154000 0.7003000 0.6935000 0.6779000 0.6278000 0.5787000 35.8 70.0 31 275.76 8.39 32.26 0 32.26 0/1
chr1 160849060 rs3766359 G A . PASS 0.2579000 0.6960000 0.6954000 0.6779000 0.6278000 0.5633000 35.43 70.0 54 729.68 21.58 42.59 0 42.59 0/1
chr1 160849082 rs3820094 A G . PASS 0.4750000 0.7190000 0.6974000 0.6799000 0.7004000 0.6388000 36.68 70.0 86 1000.00 6.60 43.02 0 43.02 0/1
chr1 160850280 rs4656957 G A . PASS 0.5802000 0.7248000 0.6974000 0.6799000 0.7004000 0.6673000 37.0 70.0 13 95.48 15.38 30.77 0 30.77 0/1
chr1 160850936 rs2236515 T C . PASS 0.5968000 0.7277000 0.6974000 0.6799000 0.7014000 0.6723000 37.0 70.0 147 1000.00 3.44 57.82 0 57.82 0/1
chr1 160851826 rs2274907 A T . PASS 0.3275000 0.6960000 0.6935000 0.6779000 0.6278000 0.5813000 36.44 68.81 256 1000.00 4.28 42.19 0 42.19 0/1
chr1 160851894 rs2274908 G A . PASS 0.3147000 0.6945000 0.6944000 0.6779000 0.6278000 0.5779000 36.27 69.0 285 1000.00 0.99 45.96 0 45.96 0/1
chr1 160852022 rs2274909 C T . PASS 0.2769000 0.6931000 0.6935000 0.6779000 0.6278000 0.5675000 36.77 69.11 125 1000.00 12.20 42.40 0 42.40 0/1
chr1 160852046 rs2274910 T C . PASS 0.2769000 0.6931000 0.6935000 0.6779000 0.6278000 0.5675000 37.0 68.67 76 991.89 4.56 39.47 0 39.47 0/1
chr1 160854526 rs2297559 G A . PASS 0.5492000 0.7277000 0.7371000 0.6849000 0.7065000 0.6697000 37.0 70.0 20 492.11 15.71 70.00 0 70.00 0/1
chr1 160864754 rs6658416 A G . PASS 0.2958000 0.6945000 0.6379000 0.6779000 0.5695000 0.5501000 37.0 69.79 84 1000.00 6.52 45.24 0 45.24 0/1
chr1 160917902 rs1556519 T C . PASS 0.0439000 0.3890000 0.2520000 0.3201000 0.3190000 0.2428000 37.0 70.0 12 140.26 33.33 41.67 0 41.67 0/1
chr1 160920809 rs3829790 A G . PASS 0.2383000 0.6239000 0.5694000 0.5736000 0.5184000 0.4804000 36.86 69.41 178 1000.00 2.12 49.44 0 49.44 0/1
chr1 160920813 rs790059 A G . PASS 1.0000000 0.9986000 1.0000000 0.9960000 1.0000000 0.9990000 36.56 69.71 189 1000.00 0.00 100.00 0 100.00 1/1
chr1 160920966 rs6680969 C T . PASS 0.3101000 0.6066000 0.5635000 0.5736000 0.4796000 0.4882000 36.08 68.85 326 1000.00 1.34 47.85 0 47.85 0/1
chr1 160968609 rs41269993 G A . PASS 0.0393000 0.2723000 0.2024000 0.2992000 0.1329000 0.1749000 36.27 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 160969110 rs2297222 T C . PASS 0.0514000 0.2752000 0.2024000 0.2992000 0.1329000 0.1785000 37.0 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 160969585 rs790056 C T . PASS 0.9433000 0.8069000 0.8343000 0.7903000 0.7863000 0.8411000 36.12 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 160969930 rs869985 A C . PASS 0.0514000 0.2752000 0.2014000 0.2992000 0.1339000 0.1785000 36.56 70.0 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 160970089 rs72712862 C T . PASS 0.0000000 0.0058000 0.0000000 0.0089000 0.0000000 0.0025959 37.0 70.0 73 1000.00 1.48 50.68 0 50.68 0/1
chr1 160970968 rs2297221 G A . PASS 0.0514000 0.2752000 0.2014000 0.2992000 0.1339000 0.1785000 35.67 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 160971015 rs2297220 G C . PASS 0.0514000 0.2752000 0.2014000 0.2992000 0.1339000 0.1785000 37.0 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 160971146 rs790055 A G . PASS 0.9206000 0.8040000 0.8343000 0.7913000 0.7607000 0.8299000 36.78 70.0 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 160971155 rs2297219 G C . PASS 0.0514000 0.2752000 0.2014000 0.2992000 0.1329000 0.1783000 36.77 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 160990906 rs2481085 G A . PASS 0.1513000 0.2839000 0.2024000 0.2922000 0.1319000 0.2045000 36.23 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 161010762 rs2073658 C T . PASS 0.0393000 0.2651000 0.1925000 0.2942000 0.1339000 0.1711000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 161010774 rs2516841 A G . PASS 0.8154000 0.7824000 0.8294000 0.7614000 0.7055000 0.7814000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 161011317 rs2516840 A G . PASS 0.8449000 0.7522000 0.8294000 0.7306000 0.6912000 0.7760000 37.0 70.0 15 591.07 0.00 100.00 0 100.00 1/1
chr1 161011355 rs2073656 G C . PASS 0.0393000 0.2651000 0.1925000 0.2942000 0.1339000 0.1711000 36.61 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 161011716 rs2774276 G C . PASS 0.8154000 0.7824000 0.8284000 0.7614000 0.7076000 0.7815000 37.0 70.0 21 837.55 0.00 100.00 0 100.00 1/1
chr1 161012590 rs2073655 G A . PASS 0.0393000 0.2651000 0.1935000 0.2942000 0.1636000 0.1771000 36.79 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 161013121 rs2516839 C T . PASS 0.1846000 0.4654000 0.3333000 0.6292000 0.4611000 0.3968000 37.0 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 161019040 rs3813609 G C . PASS 0.1815000 0.4654000 0.3333000 0.6292000 0.4611000 0.3960000 36.88 69.79 97 1000.00 0.00 100.00 0 100.00 1/1
chr1 161020997 rs55728374 C T . PASS 0.0393000 0.2651000 0.1944000 0.2962000 0.1350000 0.1721000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 161022380 rs4396136 G A . PASS 0.8941000 0.7536000 0.7083000 0.7913000 0.7219000 0.7829000 35.97 70.0 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 161022639 rs3813610 C G . PASS . . . . . . 36.48 69.57 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 161049358 rs3820097 G A . PASS 0.9871000 0.8775000 0.6756000 0.9105000 0.8170000 0.8606000 36.41 69.8 102 1000.00 0.00 100.00 0 100.00 1/1
chr1 161068836 rs11576830 A C . PASS 0.0666000 0.2968000 0.3710000 0.3390000 0.1933000 0.2392000 36.54 70.0 61 853.80 7.19 42.62 0 42.62 0/1
chr1 161089450 rs111473243,rs71090366 C CTAAACT . PASS 0.2398000 0.3746000 0.4494000 0.4006000 0.3640000 0.3572000 36.23 70.0 74 1000.00 0.75 48.65 0 50.00 0/1
chr1 161126975 rs12031437 C G . PASS 0.2322000 0.3746000 0.4494000 0.3996000 0.3620000 0.3546000 37.0 70.0 22 314.87 18.18 45.45 0 45.45 0/1
chr1 161130701 rs34779722 C T . PASS 0.0015000 0.0144000 0.0000000 0.0288000 0.0072000 0.0095847 37.0 70.0 97 1000.00 11.92 42.27 0 42.27 0/1
chr1 161136843 rs2301287 C G . PASS 0.2315000 0.3761000 0.4474000 0.4006000 0.3569000 0.3534000 37.0 70.0 14 255.41 14.29 57.14 0 57.14 0/1
chr1 161143312 rs11579514 T C . PASS 0.1097000 0.3098000 0.3839000 0.3201000 0.2065000 0.2538000 35.8 70.0 14 331.09 5.71 71.43 0 71.43 0/1
chr1 161160872 rs34884997 T C . PASS 0.0333000 0.2305000 0.3621000 0.1551000 0.1022000 0.1647000 36.4 70.0 44 658.49 10.00 45.45 0 45.45 0/1
chr1 161162173 rs7512012 G A . PASS 0.5991000 0.7089000 0.8859000 0.6054000 0.7802000 0.7087000 37.0 70.0 11 59.73 0.00 27.27 0 27.27 0/1
chr1 161163037 rs4233367 T C . PASS 0.5893000 0.7089000 0.8859000 0.6093000 0.7802000 0.7069000 36.76 70.0 100 1000.00 3.88 51.00 0 51.00 0/1
chr1 161163633 rs3813622 C T . PASS 0.5893000 0.7061000 0.8909000 0.5875000 0.7771000 0.7025000 36.64 70.0 72 1000.00 5.81 45.83 0 45.83 0/1
chr1 161167698 rs4589131 T G . PASS 0.6392000 0.7089000 0.8909000 0.5895000 0.7761000 0.7163000 37.0 70.0 10 225.67 8.57 70.00 0 70.00 0/1
chr1 161168004 rs33941127 C T . PASS 0.4145000 0.3141000 0.4494000 0.2087000 0.4080000 0.3650000 36.68 70.0 71 1000.00 9.06 52.11 0 52.11 0/1
chr1 161176137 rs4656993 A G . PASS 0.6097000 0.6902000 0.8909000 0.5825000 0.7761000 0.7045000 35.67 70.0 19 274.26 9.36 47.37 0 47.37 0/1
chr1 161184097 rs1136224 A G . PASS 0.0287000 0.2176000 0.2758000 0.1521000 0.2986000 0.1821000 37.0 70.0 13 220.79 15.38 53.85 0 53.85 0/1
chr1 161185058 rs2070901 G T . PASS 0.4334000 0.3660000 0.4464000 0.2694000 0.4182000 0.3908000 37.0 70.0 34 529.36 0.74 47.06 0 47.06 0/1
chr1 161188649 rs41270849 G A . PASS 0.0023000 0.0245000 0.0000000 0.0567000 0.0041000 0.0161740 35.4 70.0 29 482.78 11.03 51.72 0 51.72 0/1
chr1 161192845 . CC C . PASS . . . . . . 35.63 70.0 95 1000.00 5.26 80.00 1 80.00 0/1
chr1 161192845 rs72374375 CCACACACACACA C . PASS . . . . . . 35.52 70.0 93 1000.00 3.23 66.67 1 80.65 0/1
chr1 161192846 rs72170134 CA C . PASS . . . . . . 35.63 70.0 95 1000.00 5.26 80.00 1 80.00 0/1
chr1 161200586 rs2307418 T G . PASS 0.0068000 0.0836000 0.0923000 0.1491000 0.1063000 0.0827000 37.0 70.0 72 1000.00 0.56 48.61 0 48.61 0/1
chr1 161201350 rs11265567 G T . PASS 0.1067000 0.3271000 0.5218000 0.3499000 0.4540000 0.3375000 37.0 70.0 10 100.36 20.00 40.00 0 40.00 0/1
chr1 161201352 rs11265568 G A . PASS 0.1067000 0.3271000 0.5218000 0.3499000 0.4540000 0.3375000 37.0 70.0 10 104.51 20.00 40.00 0 40.00 0/1
chr1 161202605 rs2307424 G A . PASS 0.1067000 0.3256000 0.5188000 0.3489000 0.4530000 0.3363000 36.43 70.0 83 1000.00 1.23 49.40 0 50.60 0/1
chr1 161228800 rs4078110 C T . PASS 0.1929000 0.3184000 0.3581000 0.2306000 0.3252000 0.2770000 37.0 70.0 60 998.27 0.34 48.33 0 48.33 0/1
chr1 161239143 rs2502812 A G . PASS 0.6233000 0.5375000 0.5000000 0.4056000 0.3558000 0.4906000 36.72 70.0 101 1000.00 2.72 42.57 0 42.57 0/1
chr1 161253657 rs4255401 C T . PASS 0.5514000 0.5807000 0.6567000 0.4036000 0.4744000 0.5319000 37.0 70.0 10 104.51 0.00 40.00 0 40.00 0/1
chr1 161276376 rs6685495 G A . PASS 0.3275000 0.1599000 0.1399000 0.2157000 0.2055000 0.2202000 37.0 70.0 13 262.57 32.69 61.54 0 61.54 0/1
chr1 161276434 rs6674383 A G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.6 69.33 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 161475750 rs10494360 G A . PASS 0.0121000 0.0720000 0.0010000 0.1421000 0.0746000 0.0565000 35.34 70.0 39 1000.00 4.42 74.36 0 74.36 0/1
chr1 161476203 rs201218628 CCA CTG . PASS . . . . . . 36.41 69.52 191 1000.00 7.12 48.17 0 48.17 0/1
chr1 161476533 rs9427399 T C . PASS 0.0499000 0.0749000 0.0010000 0.1421000 0.0746000 0.0669000 32.2 70.0 13 113.23 0.00 38.46 0 38.46 0/1
chr1 161479599 rs7529425 G A . PASS 0.0477000 0.0749000 0.0010000 0.1441000 0.0746000 0.0667000 37.0 70.0 98 1000.00 14.29 42.86 0 42.86 0/1
chr1 161479745 rs1801274 A G . PASS 0.5257000 0.4510000 0.2778000 0.5109000 0.4192000 0.4417000 36.86 69.98 183 1000.00 2.03 45.90 0 45.90 0/1
chr1 161480649 rs11810143 A G . PASS 0.0061000 0.0735000 0.0010000 0.1431000 0.0746000 0.0553000 36.65 69.86 110 1000.00 5.77 62.73 0 62.73 0/1
chr1 161481561 rs10800357 C T . PASS 0.3336000 0.4294000 0.3403000 0.3678000 0.3804000 0.3642000 37.0 70.0 43 506.42 8.43 37.21 0 37.21 0/1
chr1 161483484 rs373579 A G . PASS 0.0053000 0.0778000 0.0069000 0.1471000 0.0767000 0.0581000 36.78 58.96 74 1000.00 2.90 72.97 0 72.97 0/1
chr1 161483579 rs383958 C T . PASS . . . . . . 37.0 39.57 33 160.60 33.77 21.21 0 21.21 0/1
chr1 161483656 rs56157533 C T . PASS . . . . . . 37.0 56.77 135 814.31 8.15 22.22 0 22.22 0/1
chr1 161483750 rs395463 C T . PASS . . . . . . 37.0 52.86 114 209.20 25.31 12.28 0 12.28 0/1
chr1 161487688 rs55703527 T C . PASS . . . . . . 37.0 44.0 26 56.35 19.23 15.38 0 15.38 0/1
chr1 161495477 rs72633678 A T . PASS . . . . . . 36.83 68.76 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 161495885 rs404508 T C . PASS 0.7791000 0.7233000 0.9117000 0.7883000 0.7853000 0.8011000 35.89 69.35 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 161514542 rs396991 A C . PASS . . . . . . 36.69 62.92 124 1000.00 3.43 31.45 0 31.45 0/1
chr1 161518172 rs147342954 C T . PASS . . . . . . 37.0 64.5 35 446.96 20.00 40.00 0 40.00 0/1
chr1 161518333 rs10127939 A T . PASS 0.0651000 0.0476000 0.0010000 0.0805000 0.0450000 0.0389000 36.84 69.15 125 1000.00 3.07 58.40 0 58.40 0/1
chr1 161519411 rs10917571 C A . PASS 0.2073000 0.3818000 0.3651000 0.4235000 0.3804000 0.3405000 37.0 70.0 44 708.12 11.04 47.73 0 47.73 0/1
chr1 161559327 rs3933769 A G . PASS 0.5779000 0.7896000 0.7341000 0.7376000 0.7403000 0.7025000 36.14 68.86 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 161561236 rs143998157 C T . PASS 0.2073000 0.2406000 0.0982000 0.3360000 0.2536000 0.2248000 36.14 64.25 29 1000.00 5.17 96.55 0 96.55 1/1
chr1 161563281 rs149146947 A AG . PASS 0.0098000 0.0793000 0.0010000 0.1372000 0.0624000 0.0535000 37.0 68.0 47 771.20 10.73 48.94 0 48.94 0/1
chr1 161565324 rs61801822 C T . PASS 0.5325000 0.7983000 0.7272000 0.7584000 0.7638000 0.6991000 34.94 67.11 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 161565381 rs76277413 A G . PASS 0.0166000 0.0850000 0.0010000 0.1431000 0.0624000 0.0573000 35.8 68.7 52 216.70 56.15 19.23 0 19.23 0/1
chr1 161576227 rs145679054 C G . PASS 0.6112000 0.7421000 0.6567000 0.7068000 0.6329000 0.6619000 37.0 63.13 23 921.09 0.00 100.00 0 100.00 1/1
chr1 161577657 rs61802306 G A . PASS 0.2375000 0.2925000 0.2728000 0.3738000 0.2710000 0.2861000 37.0 68.11 55 1000.00 0.00 100.00 0 100.00 1/1
chr1 161577669 rs61802307 G A . PASS 0.6195000 0.7392000 0.6577000 0.7048000 0.6258000 0.6621000 36.13 68.58 55 1000.00 0.00 100.00 0 100.00 1/1
chr1 161594226 rs61803008 C T . PASS 0.8737000 0.9452000 0.7411000 0.9990000 0.9448000 0.8960000 36.27 67.91 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 161594246 rs61803009 G T . PASS 0.8737000 0.9452000 0.7411000 0.9990000 0.9448000 0.8960000 36.31 66.87 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 161594524 rs71485860 AGT ACG . PASS . . . . . . 35.5 70.0 12 395.82 0.00 100.00 0 100.00 1/1
chr1 161596283 rs418215 G A . PASS 0.7897000 0.9380000 0.7450000 0.9881000 0.9468000 0.8718000 37.0 63.34 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 161599693 rs76714703 T C . PASS 0.5628000 0.4827000 0.3383000 0.6640000 0.5941000 0.5329000 36.64 57.36 99 1000.00 0.00 100.00 0 100.00 1/1
chr1 161600104 . A T . PASS . . . . . . 35.8 35.9 93 50.42 23.66 9.68 0 10.75 0/1
chr1 161600287 rs143868437 AT A . PASS 0.3313000 0.3199000 0.2817000 0.5189000 0.5409000 0.3984000 37.0 70.0 27 127.32 14.81 22.22 0 22.22 0/1
chr1 161600345 rs145831350 C T . PASS 0.3638000 0.4597000 0.3393000 0.6163000 0.5777000 0.4647000 34.6 66.8 10 134.27 0.00 50.00 0 50.00 0/1
chr1 161600787 rs3883928 G C . PASS 0.8835000 0.9928000 1.0000000 0.9990000 1.0000000 0.9681000 36.77 67.66 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 161600832 rs3883934 G T . PASS 0.4410000 0.4798000 0.3393000 0.6620000 0.5941000 0.5002000 36.45 67.86 132 1000.00 0.00 100.00 0 100.00 1/1
chr1 161601097 rs67020125 C A . PASS 0.0885000 0.0533000 0.1607000 0.0885000 0.0685000 0.0942000 37.0 70.0 87 1000.00 12.64 45.98 0 45.98 0/1
chr1 161601133 rs61803027 T C . PASS 0.8873000 0.9928000 1.0000000 0.9990000 1.0000000 0.9690000 36.37 69.99 76 1000.00 0.00 100.00 0 100.00 1/1
chr1 161644955 rs7532925 G A . PASS 0.0598000 0.0605000 0.1865000 0.1083000 0.0910000 0.1012000 35.8 67.9 10 370.22 0.00 100.00 0 100.00 1/1
chr1 161645010 rs6427615 C A . PASS 0.2443000 0.0865000 0.2510000 0.1233000 0.1411000 0.1793000 35.2 65.5 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 161654693 rs1256287 A G . PASS 0.3790000 0.6859000 0.7242000 0.6024000 0.6002000 0.5791000 36.25 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 161654843 rs1256288 C G . PASS 0.7050000 0.7853000 0.7401000 0.7177000 0.7260000 0.7298000 36.72 68.74 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 161676970 rs1340978 A G . PASS 0.5953000 0.5101000 0.8254000 0.6879000 0.5481000 0.6392000 37.0 70.0 17 674.61 0.00 100.00 0 100.00 1/1
chr1 161680258 rs6427618 G A . PASS 0.1838000 0.4827000 0.3601000 0.6561000 0.6319000 0.4431000 36.64 70.0 80 1000.00 5.53 41.25 0 41.25 0/1
chr1 161681661 rs1105238 C G . PASS 0.6619000 0.4496000 0.5734000 0.2068000 0.2822000 0.4491000 37.0 70.0 13 91.33 3.85 30.77 0 30.77 0/1
chr1 161681780 rs2275603 A G . PASS 0.7640000 0.4553000 0.5734000 0.2078000 0.2822000 0.4770000 35.5 70.0 83 1000.00 10.32 38.55 0 38.55 0/1
chr1 161683136 rs11746 G A . PASS 0.0469000 0.3444000 0.2371000 0.5129000 0.4417000 0.2971000 37.0 70.0 54 765.72 19.16 42.59 0 42.59 0/1
chr1 161695639 rs7520519 G T . PASS 0.9894000 0.9352000 1.0000000 0.8797000 0.8139000 0.9277000 36.46 69.7 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 161696782 rs11585450 G C . PASS 0.0552000 0.3775000 0.2629000 0.5258000 0.4560000 0.3145000 35.38 69.46 74 1000.00 13.51 50.00 0 50.00 0/1
chr1 161696900 rs6658140 A T . PASS 0.6505000 0.1686000 0.5139000 0.1561000 0.1963000 0.3682000 37.0 70.0 11 97.35 18.18 36.36 0 36.36 0/1
chr1 161696998 rs1875763 C G . PASS 0.0998000 0.3847000 0.2401000 0.5239000 0.4550000 0.3221000 36.48 68.26 38 797.71 4.35 60.53 0 60.53 0/1
chr1 161697072 rs72704099 G C . PASS 0.6520000 0.0951000 0.4266000 0.0606000 0.1493000 0.3125000 36.8 70.0 123 1000.00 1.30 47.97 0 47.97 0/1
chr1 161697149 rs16858529 G T . PASS 0.0703000 0.0274000 0.3889000 0.0278000 0.0215000 0.1104000 35.32 70.0 109 1000.00 4.67 52.29 0 52.29 0/1
chr1 161721403 rs200382520 T TG . PASS 0.0053000 0.0159000 0.0010000 0.0497000 0.0256000 0.0187700 35.5 70.0 18 219.91 22.22 33.33 0 44.44 0/1
chr1 161722272 rs10917852 C A . PASS 0.0514000 0.2637000 0.0486000 0.4553000 0.3231000 0.2145000 35.91 70.0 15 365.70 15.76 73.33 0 73.33 0/1
chr1 161722779 rs35439833,rs369176399 C CAAA . PASS 0.6899000 0.4798000 0.5635000 0.6372000 0.5327000 0.5940000 37.0 70.0 12 450.17 6.67 41.67 0 100.00 0/1
chr1 161722779 . C CAA . PASS 0.6899000 0.4798000 0.5635000 0.6372000 0.5327000 0.5940000 37.0 70.0 12 450.17 4.76 58.33 0 100.00 0/1
chr1 161722805 rs17415408 T G . PASS 0.0008000 0.0159000 0.0000000 0.0497000 0.0235000 0.0169730 35.0 70.0 15 156.84 6.67 40.00 0 40.00 0/1
chr1 161751741 rs1058405 A G . PASS 0.0113000 0.1700000 0.2629000 0.2724000 0.1677000 0.1669000 37.0 70.0 67 1000.00 0.28 62.69 0 62.69 0/1
chr1 161751865 rs72706043 G A . PASS 0.0000000 0.0086000 0.0000000 0.0129000 0.0000000 0.0037939 37.0 70.0 24 521.85 21.67 62.50 0 62.50 0/1
chr1 161823011 rs2257107 T A . PASS 0.0696000 0.4395000 0.3056000 0.7038000 0.6084000 0.4010000 37.0 70.0 14 545.15 0.00 100.00 0 100.00 1/1
chr1 161823197 rs3215134 G GT . PASS 0.2678000 0.8098000 0.6329000 0.7853000 0.7137000 0.6074000 36.56 70.0 23 897.63 0.00 100.00 0 100.00 1/1
chr1 161882189 rs72708088 G A . PASS 0.0030000 0.0202000 0.0000000 0.0328000 0.0010000 0.0103830 37.0 70.0 32 247.14 17.36 28.12 0 28.12 0/1
chr1 161928327 rs9482 A G . PASS 0.4183000 0.4928000 0.5060000 0.7763000 0.6258000 0.5587000 36.62 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 161963607 rs4657130 G A . PASS 0.3109000 0.6081000 0.5000000 0.6461000 0.5112000 0.4966000 36.75 70.0 185 1000.00 1.97 52.43 0 52.43 0/1
chr1 161963790 rs4657131 A G . PASS 0.5295000 0.6830000 0.6627000 0.6680000 0.5675000 0.6128000 37.0 70.0 18 372.82 0.00 61.11 0 61.11 0/1
chr1 161967681 rs2499836 A G . PASS 0.5756000 0.6816000 0.6587000 0.6710000 0.6115000 0.6332000 36.74 70.0 89 1000.00 3.49 52.81 0 52.81 0/1
chr1 161976234 rs12022536 A G . PASS 0.4418000 0.7925000 0.4583000 0.8201000 0.5491000 0.5907000 36.57 69.64 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 162269022 rs2341744 G A . PASS 0.4160000 0.4553000 0.4058000 0.5278000 0.4703000 0.4525000 37.0 70.0 85 1000.00 0.00 100.00 0 100.00 1/1
chr1 162313597 rs347278 T C . PASS 0.7610000 0.9683000 1.0000000 0.9781000 0.9888000 0.9259000 36.66 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 162313735 rs3751284 C T . PASS 0.2829000 0.4510000 0.6339000 0.3549000 0.4857000 0.4309000 36.74 70.0 89 1000.00 10.81 52.81 0 52.81 0/1
chr1 162335256 rs348624 C T . PASS 0.4342000 0.2161000 0.1230000 0.1193000 0.2945000 0.2508000 36.52 70.0 104 1000.00 1.77 48.08 0 48.08 0/1
chr1 162335424 rs1964052 T C . PASS 0.4834000 0.7795000 0.8730000 0.8797000 0.6718000 0.7192000 35.5 70.0 30 521.54 2.50 53.33 0 53.33 0/1
chr1 162343774 rs7512126 A G . PASS 0.1861000 0.4337000 0.5099000 0.4115000 0.2996000 0.3530000 37.0 70.0 15 214.77 1.90 46.67 0 46.67 0/1
chr1 162344102 rs2282397 C T . PASS 0.1634000 0.4222000 0.5089000 0.3817000 0.3057000 0.3405000 36.68 70.0 78 1000.00 13.23 48.72 0 48.72 0/1
chr1 162344390 rs164159 A G . PASS 0.9871000 0.9971000 1.0000000 1.0000000 1.0000000 0.9962000 36.91 70.0 132 1000.00 0.00 100.00 0 100.00 1/1
chr1 162345091 rs164181 G A . PASS 0.7874000 0.9755000 1.0000000 0.9980000 0.9918000 0.9385000 37.0 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 162346433 rs150155141 CA C . PASS 0.0287000 0.4020000 0.5040000 0.3569000 0.2515000 0.2855000 36.28 70.0 32 600.50 20.14 56.25 0 56.25 0/1
chr1 162348662 rs164188 C T . PASS 0.9841000 1.0000000 1.0000000 1.0000000 1.0000000 0.9958000 36.69 69.49 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 162352111 rs164189 G A . PASS 0.3994000 0.4035000 0.2619000 0.5070000 0.3671000 0.3876000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 162367071 rs17852003 C T . PASS 0.4418000 0.2925000 0.2063000 0.3171000 0.2301000 0.3073000 36.76 70.0 102 1000.00 0.00 100.00 0 100.00 1/1
chr1 162411199 rs164593 T G . PASS 0.5469000 0.3184000 0.1865000 0.3231000 0.3875000 0.3666000 37.0 70.0 10 183.90 0.00 60.00 0 60.00 0/1
chr1 162415426 rs66587648 C T . PASS 0.1641000 0.2464000 0.1905000 0.2495000 0.2127000 0.2075000 37.0 70.0 16 253.54 0.00 50.00 0 50.00 0/1
chr1 162467014 rs10919549 C G . PASS 0.3896000 0.4337000 0.4683000 0.4513000 0.4172000 0.4293000 35.8 70.0 10 366.07 0.00 100.00 0 100.00 1/1
chr1 162470961 rs5778280 A AT . PASS 0.4160000 0.4251000 0.4593000 0.4294000 0.4294000 0.4313000 36.54 70.0 15 563.47 2.86 93.33 0 100.00 1/1
chr1 162592702 rs16864157 C T . PASS 0.3707000 0.3775000 0.5208000 0.4712000 0.6810000 0.4826000 36.67 70.0 66 1000.00 10.10 54.55 0 54.55 0/1
chr1 162722846 rs1632311 C G . PASS 0.8918000 0.9942000 1.0000000 0.9990000 1.0000000 0.9704000 35.93 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 162725655 rs1115570 A C . PASS 0.7814000 0.9784000 0.9603000 0.9970000 0.9857000 0.9279000 36.52 70.0 25 992.61 0.00 100.00 0 100.00 1/1
chr1 162740327 rs1780003 T C . PASS 0.8033000 0.9827000 1.0000000 0.9990000 1.0000000 0.9455000 37.0 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 162743418 rs1355287 G T . PASS 0.9720000 0.9986000 1.0000000 1.0000000 1.0000000 0.9924000 36.26 70.0 65 1000.00 0.00 100.00 0 100.00 1/1
chr1 162748588 rs907074 C A . PASS 0.8873000 0.9914000 1.0000000 0.9990000 1.0000000 0.9689000 36.33 70.0 18 700.22 0.00 100.00 0 100.00 1/1
chr1 162760551 rs1704754 C T . PASS 0.1944000 0.5620000 0.5764000 0.7813000 0.6616000 0.5314000 36.41 65.71 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 162760554 rs71519246 T C . PASS 0.8048000 0.9827000 1.0000000 0.9990000 1.0000000 0.9459000 36.45 65.89 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 162766476 rs1780019 C T . PASS 0.2118000 0.5692000 0.5645000 0.7813000 0.6595000 0.5341000 36.36 69.93 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 162774236 rs77482353 A G . PASS 0.1498000 0.2637000 0.2282000 0.3479000 0.0920000 0.2099000 35.29 69.71 17 477.13 5.04 82.35 0 82.35 0/1
chr1 162775267 rs12563263 C T . PASS 0.1467000 0.2536000 0.1369000 0.3211000 0.0869000 0.1829000 36.45 66.45 73 1000.00 2.30 60.27 0 60.27 0/1
chr1 162896416 rs72713395 G T . PASS 0.0008000 0.0058000 0.0000000 0.0159000 0.0000000 0.0041933 34.6 70.0 11 127.11 25.45 45.45 0 45.45 0/1
chr1 162896420 rs6427698 G C . PASS 0.6392000 0.4827000 0.6716000 0.5318000 0.4969000 0.5747000 37.0 70.0 12 461.62 0.00 100.00 0 100.00 1/1
chr1 162896495 rs6427699 G A . PASS 0.5356000 0.4265000 0.4821000 0.4841000 0.4029000 0.4734000 36.37 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 162896561 rs6413905 C G . PASS 0.2829000 0.0735000 0.0030000 0.1074000 0.0695000 0.1206000 36.33 70.0 50 552.75 7.11 36.00 0 36.00 0/1
chr1 163117351 rs3768560 G T . PASS 0.1664000 0.5216000 0.4563000 0.4195000 0.4274000 0.3758000 37.0 70.0 11 55.58 6.06 27.27 0 27.27 0/1
chr1 163122528 rs1354939 G C . PASS 0.2224000 0.7205000 0.6230000 0.6431000 0.7393000 0.5575000 37.0 70.0 25 1000.00 0.00 100.00 0 100.00 1/1
chr1 163289571 rs2136241 C T . PASS 0.5091000 0.5202000 0.5278000 0.5408000 0.5297000 0.5248000 36.78 70.0 55 1000.00 0.00 100.00 0 100.00 1/1
chr1 163309302 rs2999852 C T . PASS 0.6952000 0.9236000 0.9722000 0.9602000 0.9734000 0.8902000 37.0 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 163503069 rs2791170 A G . PASS 0.8790000 0.9870000 1.0000000 1.0000000 1.0000000 0.9663000 36.4 70.0 20 787.91 0.00 100.00 0 100.00 1/1
chr1 163503129 rs17364032 G A . PASS 0.0461000 0.3329000 0.2649000 0.2972000 0.2035000 0.2111000 37.0 70.0 55 1000.00 12.73 54.55 0 54.55 0/1
chr1 163910256 rs10799969 T A . PASS 0.5582000 0.4366000 0.3671000 0.3837000 0.5092000 0.4583000 36.82 69.69 65 1000.00 0.00 100.00 0 100.00 1/1
chr1 163910297 rs10799970 A G . PASS 0.5582000 0.4380000 0.3671000 0.3837000 0.5092000 0.4585000 36.62 69.69 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 164326453 rs10917988 G C . PASS 0.1059000 0.2565000 0.4286000 0.2753000 0.2955000 0.2628000 36.57 70.0 69 913.26 8.59 40.58 0 40.58 0/1
chr1 164326589 rs34663453 T G . PASS 0.1891000 0.1354000 0.0208000 0.2386000 0.1892000 0.1577000 34.88 70.0 35 532.10 3.70 48.57 0 48.57 0/1
chr1 164789444 rs1538488 A G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 35.59 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 164904573 rs10753651 T A . PASS 0.5454000 0.4006000 0.3274000 0.4274000 0.4397000 0.4371000 37.0 70.0 50 648.30 2.00 40.00 0 40.00 0/1
chr1 164904581 rs56235501 A C . PASS 0.0000000 0.0216000 0.0000000 0.0328000 0.0020000 0.0099840 37.0 70.0 54 761.56 3.06 42.59 0 42.59 0/1
chr1 165173216 rs1354509 A G . PASS 0.9955000 1.0000000 1.0000000 1.0000000 1.0000000 0.9988000 36.87 69.79 94 1000.00 0.00 100.00 0 100.00 1/1
chr1 165218679 rs9970062 C T . PASS 0.2867000 0.2032000 0.0823000 0.3181000 0.1667000 0.2169000 35.82 69.61 118 1000.00 4.29 43.22 0 43.22 0/1
chr1 165221696 rs1553607 C A . PASS 0.5424000 0.6326000 0.6855000 0.5219000 0.6125000 0.5933000 35.8 70.0 41 1000.00 0.65 73.17 0 73.17 0/1
chr1 165370400 rs56362364 G C . PASS 0.0847000 0.1282000 0.0010000 0.1839000 0.0358000 0.0843000 33.57 70.0 17 180.59 1.68 41.18 0 41.18 0/1
chr1 165370475 rs10918169 G C . PASS 0.3003000 0.1441000 0.0010000 0.1829000 0.0358000 0.1432000 35.38 70.0 80 1000.00 4.39 46.25 0 46.25 0/1
chr1 165370757 rs283690 G A . PASS 0.8540000 0.6124000 0.7133000 0.4761000 0.7679000 0.6995000 35.8 70.0 10 370.22 0.00 100.00 0 100.00 1/1
chr1 165376043 rs283696 T C . PASS 0.8805000 0.8300000 0.9276000 0.7962000 0.9110000 0.8720000 36.0 70.0 28 372.49 14.29 42.86 0 42.86 0/1
chr1 165377389 rs283692 T C . PASS 0.9864000 1.0000000 1.0000000 0.9990000 1.0000000 0.9962000 37.0 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 165377552 rs2134095 G A . PASS 0.2284000 0.6023000 0.5079000 0.6710000 0.5020000 0.4788000 36.81 70.0 96 1000.00 5.95 65.62 0 65.62 0/1
chr1 165378729 . TA T . PASS . . . . . . 36.68 70.0 19 742.59 0.00 100.00 1 100.00 1/1
chr1 165378729 . TACACAC TAC . PASS . . . . . . . . 18 67.86 11.11 33.33 1 100.00 0/1
chr1 165378729 . TACACAC TACAC . PASS . . . . . . . . 18 67.86 22.22 44.44 1 100.00 0/1
chr1 165378730 . AC A . PASS . . . . . . 36.68 70.0 19 742.59 0.00 100.00 1 100.00 1/1
chr1 165378731 . CA C . PASS . . . . . . 37.0 70.0 19 360.25 22.97 57.89 1 57.89 0/1
chr1 165378732 . AC A . PASS . . . . . . 37.0 70.0 19 360.25 22.97 57.89 1 57.89 0/1
chr1 165378992 rs10918172 C T . PASS 0.1399000 0.1225000 0.0000000 0.1769000 0.0327000 0.0958000 35.29 70.0 14 205.77 14.29 50.00 0 50.00 0/1
chr1 165389285 rs157870 C G . PASS 0.5915000 0.4121000 0.1835000 0.3887000 0.1656000 0.3606000 36.54 70.0 26 992.61 3.08 96.15 0 100.00 1/1
chr1 165398115 rs113471 T C . PASS 0.4160000 0.2896000 0.2460000 0.1531000 0.1012000 0.2500000 36.53 70.0 107 1000.00 2.71 47.66 0 47.66 0/1
chr1 165621322 rs9333479,rs77176546 TATTATC T . PASS 0.2315000 0.2190000 0.1865000 0.2356000 0.3497000 0.2446000 33.83 70.0 48 508.33 13.89 37.50 0 37.50 0/1
chr1 165634425 rs3820362 C G . PASS 0.3911000 0.2939000 0.1488000 0.4930000 0.3384000 0.3391000 37.0 70.0 34 571.14 5.88 50.00 0 50.00 0/1
chr1 165636749 rs2176151 A G . PASS 0.3971000 0.3386000 0.1567000 0.4960000 0.4202000 0.3650000 37.0 70.0 21 322.02 1.90 47.62 0 47.62 0/1
chr1 165648559 rs4646897 T G . PASS 0.3654000 0.3343000 0.1538000 0.4990000 0.4100000 0.3540000 37.0 70.0 15 168.85 20.00 40.00 0 40.00 0/1
chr1 165648709 rs1143661 C T . PASS 0.1702000 0.0447000 0.0179000 0.0616000 0.0624000 0.0793000 35.84 69.35 74 1000.00 6.54 41.89 0 41.89 0/1
chr1 165648886 rs4646896 G A . PASS 0.3654000 0.3343000 0.1538000 0.4980000 0.4131000 0.3544000 37.0 70.0 19 328.04 15.79 52.63 0 52.63 0/1
chr1 165648894 rs4646895 C G . PASS 0.3654000 0.3343000 0.1538000 0.4990000 0.4131000 0.3546000 34.6 70.0 15 311.92 6.67 66.67 0 66.67 0/1
chr1 165651502 rs1913844 G C . PASS 0.6074000 0.7723000 0.9881000 0.6362000 0.7781000 0.7460000 37.0 70.0 67 1000.00 6.07 44.78 0 44.78 0/1
chr1 165652273 rs1143659 A G . PASS 0.6074000 0.7723000 0.9881000 0.6372000 0.7781000 0.7462000 37.0 70.0 125 1000.00 7.25 49.60 0 49.60 0/1
chr1 165737704 rs2790053 C G . PASS 0.9168000 0.8703000 0.9911000 0.8598000 0.9560000 0.9215000 35.38 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 165859630 rs477033 C G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.66 70.0 71 1000.00 0.00 100.00 0 100.00 1/1
chr1 165859640 rs138035087,rs71583457 G GTGT . PASS 0.0068000 0.0893000 0.0010000 0.1779000 0.0470000 0.0593000 36.57 70.0 61 966.43 2.08 49.18 0 49.18 0/1
chr1 165967420 rs732285 G A . PASS 0.4599000 0.5548000 0.4306000 0.5795000 0.5041000 0.4998000 36.83 70.0 71 1000.00 0.00 100.00 0 100.00 1/1
chr1 166029825 rs72703906 C T . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 70.0 55 1000.00 9.28 52.73 0 52.73 0/1
chr1 166037909 rs3856211 C T . PASS 0.5930000 0.4424000 0.5675000 0.5855000 0.6288000 0.5725000 36.08 70.0 64 836.91 1.44 40.62 0 40.62 0/1
chr1 166039898 rs41269662 C G . PASS 0.2110000 0.3156000 0.2560000 0.1501000 0.2178000 0.2236000 36.33 70.0 70 1000.00 2.54 51.43 0 51.43 0/1
chr1 166244927 rs1901357 T C . PASS 0.3048000 0.3098000 0.4306000 0.2316000 0.3650000 0.3279000 36.0 69.96 35 840.65 16.43 68.57 0 68.57 0/1
chr1 166244970 rs3841379 C CA . PASS 0.3048000 0.3098000 0.4306000 0.2316000 0.3661000 0.3281000 36.52 69.96 34 840.08 4.90 70.59 0 70.59 0/1
chr1 166245037 rs1823620 A G . PASS 0.5666000 0.9179000 0.9504000 0.9980000 0.9969000 0.8632000 36.53 69.16 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 166245170 rs3813991 G C . PASS 0.2171000 0.1484000 0.3313000 0.2217000 0.3446000 0.2564000 36.69 70.0 65 1000.00 3.08 60.00 0 60.00 0/1
chr1 166245453 rs2599511 T C . PASS 0.2617000 0.6081000 0.5198000 0.7664000 0.6309000 0.5351000 37.0 70.0 34 742.37 4.76 61.76 0 61.76 0/1
chr1 166246419 rs2488896 A G . PASS 0.5756000 0.9179000 0.9504000 0.9980000 0.9969000 0.8656000 36.88 69.62 104 1000.00 0.00 100.00 0 100.00 1/1
chr1 166550501 rs1372685 C T . PASS 0.6021000 0.4582000 0.5853000 0.6223000 0.3937000 0.5421000 36.16 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 166717206 rs1815531 T C . PASS 0.9675000 0.8876000 0.9990000 0.7932000 0.9632000 0.9269000 37.0 69.83 18 716.39 0.00 100.00 0 100.00 1/1
chr1 166717477 rs60029139 CT C . PASS 0.9675000 0.8876000 0.9990000 0.7922000 0.9632000 0.9267000 34.68 69.59 22 822.85 0.00 100.00 0 100.00 1/1
chr1 166717685 rs533295 A G . PASS 0.9750000 0.8876000 0.9990000 0.7922000 0.9632000 0.9287000 35.8 68.65 20 775.90 0.00 100.00 0 100.00 1/1
chr1 166717712 rs549009 G A . PASS 0.5265000 0.2435000 0.2718000 0.2883000 0.2382000 0.3319000 37.0 69.12 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 166765794 rs858796 T C . PASS 0.8154000 0.8026000 0.7470000 0.7247000 0.6810000 0.7554000 37.0 70.0 19 758.16 0.00 100.00 0 100.00 1/1
chr1 166826773 rs6675153 C T . PASS 0.6725000 0.3602000 0.2996000 0.4483000 0.3303000 0.4423000 36.14 69.71 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 166827224 rs6675750 G A . PASS 0.3654000 0.3141000 0.3006000 0.4175000 0.3292000 0.3486000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 166829320 rs3215444 C CT . PASS 0.3918000 0.3127000 0.2986000 0.4155000 0.3333000 0.3554000 36.08 70.0 12 438.16 0.00 100.00 0 100.00 1/1
chr1 166831404 rs2075947 A C . PASS 0.3926000 0.3055000 0.2996000 0.4165000 0.3272000 0.3538000 37.0 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 166833199 rs2272793 C A . PASS 0.3903000 0.3055000 0.2996000 0.4165000 0.3272000 0.3532000 34.6 70.0 10 354.06 0.00 100.00 0 100.00 1/1
chr1 166899807 rs2013526 T C . PASS 0.5325000 0.3862000 0.6944000 0.4602000 0.5143000 0.5268000 36.59 70.0 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 166961857 rs7511933 G A . PASS 0.3669000 0.2421000 0.2460000 0.3091000 0.2577000 0.2923000 37.0 70.0 11 268.58 11.36 72.73 0 72.73 0/1
chr1 166963234 rs3736988 T C . PASS 0.6399000 0.2853000 0.2470000 0.3588000 0.2607000 0.3812000 37.0 70.0 10 62.74 13.33 30.00 0 30.00 0/1
chr1 167059462 rs2281963 G C . PASS 0.5605000 0.3429000 0.1736000 0.5348000 0.2342000 0.3836000 37.0 70.0 58 749.52 4.35 39.66 0 39.66 0/1
chr1 167059575 rs28384507 G T . PASS 0.4629000 0.3012000 0.1736000 0.4523000 0.2331000 0.3353000 37.0 70.0 23 562.48 11.96 69.57 0 69.57 0/1
chr1 167082869 rs12122365 G A . PASS 0.7958000 0.4986000 0.8929000 0.5596000 0.4867000 0.6663000 37.0 70.0 10 188.05 13.33 60.00 0 60.00 0/1
chr1 167088473 rs1410244 C A . PASS 0.3903000 0.2536000 0.7351000 0.2445000 0.3569000 0.4050000 37.0 70.0 49 490.23 2.04 32.65 0 36.73 0/1
chr1 167095163 rs267745 G C . PASS 0.8880000 0.4597000 0.8720000 0.4751000 0.3732000 0.6420000 36.5 70.0 99 1000.00 7.58 48.48 0 48.48 0/1
chr1 167095765 rs6668826 G A . PASS 0.2716000 0.2003000 0.7421000 0.1680000 0.2382000 0.3291000 35.97 70.0 78 1000.00 2.27 44.87 0 44.87 0/1
chr1 167095881 rs3795605 G A . PASS 0.2716000 0.2003000 0.7431000 0.1680000 0.2382000 0.3293000 37.0 70.0 40 724.31 9.76 52.50 0 52.50 0/1
chr1 167097739 rs2281959 C A . PASS 0.2776000 0.2867000 0.7431000 0.3141000 0.2894000 0.3822000 35.4 70.0 46 427.47 15.65 32.61 0 32.61 0/1
chr1 167121665 rs4656525 G A . PASS 0.0098000 0.0937000 0.0020000 0.1292000 0.1411000 0.0695000 37.0 70.0 12 223.81 0.00 58.33 0 58.33 0/1
chr1 167121814 rs10753750 C T . PASS 0.3487000 0.5447000 0.6617000 0.4483000 0.6483000 0.5174000 37.0 70.0 118 1000.00 12.40 34.75 0 34.75 0/1
chr1 167121851 rs4657637 G C . PASS 0.8941000 0.8545000 0.7361000 0.8946000 0.8926000 0.8566000 36.79 70.0 117 1000.00 0.00 100.00 0 100.00 1/1
chr1 167121961 rs4657638 C T . PASS 0.0976000 0.0951000 0.0020000 0.1292000 0.1411000 0.0929000 36.29 70.0 22 599.40 0.00 77.27 0 77.27 0/1
chr1 167353258 rs35617253 AT A . PASS 0.6952000 0.8084000 0.8899000 0.7227000 0.7536000 0.7670000 35.7 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 167367193 rs7524019 C T . PASS 0.0522000 0.6138000 0.6994000 0.4861000 0.6278000 0.4599000 35.57 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 167381640 rs35736613 A AG . PASS 0.2769000 0.7651000 0.8859000 0.6978000 0.7280000 0.6398000 36.2 70.0 15 575.48 0.00 100.00 0 100.00 1/1
chr1 167382374 rs10753757 A C . PASS 0.7042000 0.8084000 0.8899000 0.7247000 0.7546000 0.7700000 35.33 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 167382399 . AG A . PASS . . . . . . 34.62 70.0 33 1000.00 3.60 96.97 1 96.97 1/1
chr1 167382399 rs67647055,rs72176559,rs112044990 AGTGT A . PASS . . . . . . 34.97 70.0 36 965.17 5.91 86.11 1 97.22 0/1
chr1 167382400 . GT G . PASS . . . . . . 34.62 70.0 33 1000.00 3.60 96.97 1 96.97 1/1
chr1 167487586 rs35864197 C G . PASS 0.0424000 0.1095000 0.0298000 0.1501000 0.2474000 0.1108000 35.15 70.0 31 389.07 4.47 41.94 0 41.94 0/1
chr1 167488799 rs863454 C A . PASS 0.0809000 0.5245000 0.0982000 0.4085000 0.4417000 0.2821000 36.08 70.0 27 413.11 11.40 48.15 0 48.15 0/1
chr1 167509623 . T TAGC . PASS 0.0817000 0.3098000 0.6677000 0.2724000 0.3456000 0.3211000 36.79 70.0 20 784.34 0.00 100.00 0 100.00 1/1
chr1 167515272 rs7513428 T C . PASS 0.7345000 0.9006000 0.9802000 0.8509000 0.8671000 0.8562000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 167517192 . C CGA . PASS 0.0053000 0.0101000 0.0000000 0.0328000 0.0031000 0.0091853 36.45 70.0 20 351.21 7.27 55.00 0 55.00 0/1
chr1 167569730 rs7514302 G T . PASS 0.5280000 0.6729000 0.5179000 0.6352000 0.3548000 0.5337000 36.08 70.0 68 820.71 11.31 38.24 0 38.24 0/1
chr1 167599533 rs3738220 C T . PASS 0.0598000 0.1412000 0.2431000 0.1193000 0.0838000 0.1246000 37.0 67.78 18 289.28 33.33 50.00 0 50.00 0/1
chr1 167663678 rs56152546 G T . PASS 0.0091000 0.0663000 0.0288000 0.0726000 0.0726000 0.0461000 37.0 70.0 12 303.19 0.00 75.00 0 75.00 0/1
chr1 167666316 rs72697738 T C . PASS 0.0091000 0.0663000 0.0248000 0.0736000 0.0654000 0.0441000 37.0 70.0 38 897.41 1.05 65.79 0 65.79 0/1
chr1 167734793 rs763283 C T . PASS 0.1225000 0.3718000 0.3710000 0.1640000 0.1595000 0.2226000 35.74 70.0 43 607.72 0.73 44.19 0 44.19 0/1
chr1 167778843 rs3213588 G A . PASS 0.8374000 0.3790000 0.1766000 0.4324000 0.3845000 0.4710000 37.0 70.0 17 375.83 0.00 64.71 0 64.71 0/1
chr1 167787265 rs12060498 C T . PASS 0.2133000 0.1282000 0.0327000 0.1590000 0.0327000 0.1190000 37.0 70.0 25 435.29 27.69 52.00 0 52.00 0/1
chr1 167789196 rs72697795 G C . PASS 0.0310000 0.2133000 0.3611000 0.1054000 0.1861000 0.1679000 35.4 69.87 30 475.63 13.33 50.00 0 50.00 0/1
chr1 167789475 rs4657721 G C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.38 69.79 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 167792356 rs72697797 G A . PASS 0.0008000 0.0144000 0.0000000 0.0378000 0.0072000 0.0111820 37.0 70.0 47 369.08 2.95 27.66 0 27.66 0/1
chr1 167793670 rs1476074 C T . PASS 0.3003000 0.4697000 0.4226000 0.4205000 0.2965000 0.3718000 36.29 70.0 27 584.35 7.84 62.96 0 62.96 0/1
chr1 167806647 rs1034463 T A . PASS 0.9470000 0.7536000 0.4970000 0.6690000 0.6186000 0.7097000 37.0 70.0 10 100.36 40.00 40.00 0 40.00 0/1
chr1 167815030 rs12048517 A G . PASS 0.0106000 0.0533000 0.2381000 0.0358000 0.1145000 0.0877000 36.25 70.0 96 1000.00 2.08 50.00 0 50.00 0/1
chr1 167815167 rs2269678 T C . PASS 0.0825000 0.2853000 0.3800000 0.2843000 0.1871000 0.2314000 37.0 69.26 42 968.91 8.99 64.29 0 64.29 0/1
chr1 167817639 rs203795 A G . PASS 0.9297000 0.8372000 0.8571000 0.7137000 0.7413000 0.8221000 35.6 70.0 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 167823505 rs3738235 G A . PASS 0.0106000 0.0533000 0.2292000 0.0368000 0.1145000 0.0861000 37.0 70.0 26 390.52 20.51 46.15 0 46.15 0/1
chr1 167823512 rs3738236 T C . PASS 0.7602000 0.6282000 0.6746000 0.5229000 0.5542000 0.6368000 35.67 69.26 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 167825485 rs2071921 T C . PASS 0.4599000 0.5749000 0.7113000 0.4105000 0.3988000 0.5046000 36.79 69.66 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 167825606 rs2071922 A G . PASS 0.0756000 0.2752000 0.4177000 0.1272000 0.2076000 0.2083000 36.77 70.0 72 1000.00 1.07 72.22 0 72.22 0/1
chr1 167825718 rs7537851 C T . PASS 0.2012000 0.2637000 0.2361000 0.2734000 0.1616000 0.2236000 35.08 70.0 47 822.28 3.91 53.19 0 53.19 0/1
chr1 167839578 rs67878347 G A . PASS 0.0356000 0.2161000 0.1260000 0.2068000 0.0992000 0.1256000 36.61 70.0 69 1000.00 4.39 44.93 0 44.93 0/1
chr1 167849318 rs203847 A G . PASS 0.4660000 0.3184000 0.1270000 0.3231000 0.1431000 0.2855000 36.59 70.0 58 992.28 3.45 50.00 0 50.00 0/1
chr1 167849414 rs203849 A G . PASS 0.6687000 0.4597000 0.3224000 0.5040000 0.4448000 0.4932000 36.58 69.76 164 1000.00 3.70 51.83 0 51.83 0/1
chr1 167889094 rs17556487 T A . PASS 0.0552000 0.3862000 0.1310000 0.2286000 0.1585000 0.1713000 37.0 70.0 11 55.58 0.00 27.27 0 27.27 0/1
chr1 167893759 rs9618 G A . PASS 0.6823000 0.5202000 0.1806000 0.3519000 0.2423000 0.4065000 37.0 70.0 67 893.67 6.63 40.30 0 40.30 0/1
chr1 167906239 rs203788 A C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.74 69.78 92 1000.00 0.00 100.00 0 100.00 1/1
chr1 167973976 rs1060041 C T . PASS 0.0401000 0.3876000 0.1339000 0.2266000 0.1595000 0.1679000 37.0 69.93 70 884.63 18.52 38.57 0 38.57 0/1
chr1 167992344 rs201541 T A . PASS 0.7549000 0.5432000 0.1895000 0.3608000 0.2474000 0.4335000 36.5 69.88 47 812.39 10.82 51.06 0 51.06 0/1
chr1 168013850 rs11558511 T C . PASS 0.0545000 0.1383000 0.2044000 0.2823000 0.2720000 0.1845000 35.59 70.0 42 527.19 3.36 40.48 0 40.48 0/1
chr1 168025245 rs3977719 T C . PASS . . . . . . 36.08 68.28 108 1000.00 0.94 60.19 0 60.19 0/1
chr1 168025262 rs3977720 A G . PASS . . . . . . 36.03 66.68 119 1000.00 1.50 62.18 0 62.18 0/1
chr1 168025400 rs3977721 G C . PASS . . . . . . 36.23 68.43 96 1000.00 6.47 48.96 0 48.96 0/1
chr1 168025409 rs3977722 A G . PASS . . . . . . 35.72 68.66 94 1000.00 8.51 50.00 0 50.00 0/1
chr1 168025538 rs3977723 T C . PASS 0.7821000 0.6527000 0.5268000 0.5577000 0.5317000 0.6188000 36.74 66.89 80 1000.00 0.11 58.75 0 58.75 0/1
chr1 168025577 rs7535741 C T . PASS . . . . . . 37.0 64.1 61 201.63 4.59 16.39 0 16.39 0/1
chr1 168025628 rs7535915 G A . PASS . . . . . . 36.33 58.44 35 602.04 13.02 51.43 0 51.43 0/1
chr1 168025664 rs7535844 C A . PASS . . . . . . 37.0 60.3 23 311.85 49.57 43.48 0 43.48 0/1
chr1 168059866 rs275149 A G . PASS 0.5257000 0.4063000 0.1518000 0.2634000 0.2147000 0.3205000 36.61 69.35 78 1000.00 5.96 39.74 0 39.74 0/1
chr1 168074145 rs6427119 G A . PASS 0.3321000 0.4827000 0.1488000 0.3390000 0.1759000 0.2869000 36.62 70.0 51 1000.00 2.82 62.75 0 62.75 0/1
chr1 168180219 rs10737540 G T . PASS 0.4887000 0.5029000 0.5298000 0.3897000 0.5685000 0.4946000 35.91 70.0 22 344.63 27.27 50.00 0 50.00 0/1
chr1 168200733 rs11588504 T C . PASS 0.2821000 0.4971000 0.4375000 0.6471000 0.3783000 0.4353000 37.0 70.0 26 348.75 22.38 42.31 0 42.31 0/1
chr1 168208308 rs12142742 T C . PASS 0.5741000 0.5533000 0.4405000 0.6690000 0.4243000 0.5341000 37.0 70.0 27 387.50 7.41 44.44 0 44.44 0/1
chr1 168230331 rs71974117,rs66939843 ACTGGATAGCTGAACCATCATC A . PASS 0.4213000 0.4380000 0.3492000 0.5010000 0.3436000 0.4099000 35.89 70.0 67 858.73 5.65 41.79 0 41.79 0/1
chr1 168262289 rs7543224 A G . PASS 0.6619000 0.4366000 0.5000000 0.6561000 0.5787000 0.5807000 37.0 70.0 12 140.26 16.67 41.67 0 41.67 0/1
chr1 168262299 rs7520743 C T . PASS 0.2020000 0.3501000 0.4058000 0.5954000 0.3415000 0.3698000 35.0 70.0 15 161.00 26.67 40.00 0 40.00 0/1
chr1 168262338 rs56064910 C T . PASS 0.0000000 0.0086000 0.0010000 0.0109000 0.0000000 0.0035942 36.14 70.0 33 440.97 3.46 42.42 0 42.42 0/1
chr1 168262527 rs12096093 G T . PASS . . . . . . 35.26 70.0 114 1000.00 10.78 30.70 0 33.33 0/1
chr1 168262624 rs10800350 A G . PASS 0.9274000 0.9179000 0.9087000 0.9254000 0.8538000 0.9075000 32.2 70.0 12 116.24 0.00 41.67 0 41.67 0/1
chr1 168338716 rs72701783 A G . PASS 0.1619000 0.0231000 0.0000000 0.0268000 0.0235000 0.0559000 37.0 68.57 44 419.87 4.55 31.82 0 31.82 0/1
chr1 168510122 rs470733 T A . PASS 0.4818000 0.6499000 0.8671000 0.5398000 0.6524000 0.6276000 35.77 55.0 66 1000.00 2.10 59.09 0 59.09 0/1
chr1 168511155 rs76400946 T C . PASS 0.6059000 0.6527000 0.8661000 0.5427000 0.6554000 0.6617000 37.0 69.0 20 325.03 10.00 50.00 0 50.00 0/1
chr1 168513067 rs61801330 C A . PASS 0.3986000 0.1599000 0.0298000 0.1958000 0.1738000 0.2067000 37.0 59.6 28 296.81 30.00 35.71 0 35.71 0/1
chr1 168513109 rs3820404 A G . PASS 0.3442000 0.1772000 0.0327000 0.2028000 0.1748000 0.1969000 37.0 55.93 50 443.60 2.67 30.00 0 30.00 0/1
chr1 168513228 rs3820407 G A . PASS 0.1581000 0.0994000 0.0079000 0.1332000 0.0828000 0.1000000 37.0 57.8 29 89.09 17.93 17.24 0 17.24 0/1
chr1 168545821 rs61079363 G A . PASS 0.4387000 0.1513000 0.0317000 0.1869000 0.1677000 0.2135000 37.0 63.72 51 1000.00 6.50 62.75 0 62.75 0/1
chr1 168545864 rs116453184 A G . PASS 0.2216000 0.1239000 0.0079000 0.1640000 0.0992000 0.1296000 37.0 51.83 102 663.01 6.86 23.53 0 23.53 0/1
chr1 168545949 rs34933908 G A . PASS . . . . . . 36.49 65.16 110 1000.00 3.90 63.64 0 63.64 0/1
chr1 168549422 rs6427130 C T . PASS 0.5393000 0.3847000 0.1935000 0.5706000 0.3845000 0.4243000 36.33 69.14 75 1000.00 3.78 48.00 0 48.00 0/1
chr1 168550535 rs79981832 A G . PASS 0.0454000 0.1816000 0.0169000 0.3072000 0.1820000 0.1378000 36.43 68.33 42 706.28 9.52 50.00 0 50.00 0/1
chr1 168575163 rs10800363 C T . PASS 0.4826000 0.5980000 0.4623000 0.6004000 0.5542000 0.5321000 36.02 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 168665747 rs78760104 C CT . PASS 0.8313000 0.5821000 0.5804000 0.5417000 0.6186000 0.6466000 37.0 70.0 58 1000.00 7.12 53.45 0 53.45 0/1
chr1 168665974 rs524705 T C . PASS 0.8313000 0.5821000 0.5804000 0.5417000 0.6186000 0.6466000 37.0 70.0 16 128.22 2.50 31.25 0 31.25 0/1
chr1 168683476 rs35449613 C T . PASS 0.0023000 0.0245000 0.0010000 0.0596000 0.0695000 0.0298000 37.0 69.55 86 1000.00 2.43 51.16 0 51.16 0/1
chr1 168698173 rs1052591 C T . PASS 0.2519000 0.3141000 0.1637000 0.5129000 0.3661000 0.3175000 37.0 70.0 81 1000.00 1.08 39.51 0 39.51 0/1
chr1 168907899 rs3795611 G A . PASS 0.0711000 0.1383000 0.0377000 0.1034000 0.0900000 0.0839000 35.5 70.0 17 579.12 5.88 94.12 0 94.12 1/1
chr1 168908105 rs3795612 C G . PASS 0.0711000 0.1383000 0.0377000 0.1034000 0.0900000 0.0839000 37.0 69.92 30 416.09 7.69 43.33 0 43.33 0/1
chr1 169076212 rs1200128 G C . PASS 0.0106000 0.1902000 0.0327000 0.3072000 0.1022000 0.1174000 37.0 70.0 27 466.90 11.64 51.85 0 51.85 0/1
chr1 169093398 rs10919064 C A . PASS 0.3707000 0.5677000 0.6637000 0.5487000 0.4550000 0.5092000 36.48 70.0 79 1000.00 0.55 58.23 0 58.23 0/1
chr1 169093557 rs10919065 T G . PASS 0.3933000 0.6023000 0.8145000 0.5964000 0.5337000 0.5753000 37.0 70.0 10 142.14 0.00 50.00 0 50.00 0/1
chr1 169272451 rs10800427 A T . PASS 0.9985000 0.9784000 0.9970000 0.9592000 0.9703000 0.9820000 36.57 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 169272453 rs10800428 G A . PASS 0.9992000 0.9784000 0.9990000 0.9592000 0.9714000 0.9828000 37.0 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 169345704 rs12563090 G A . PASS 0.4357000 0.5634000 0.1577000 0.5944000 0.2751000 0.3980000 36.0 70.0 20 396.57 3.33 60.00 0 60.00 0/1
chr1 169349914 rs56859218 G T . PASS 0.1377000 0.1427000 0.1339000 0.1252000 0.0603000 0.1200000 37.0 70.0 20 279.12 12.22 45.00 0 45.00 0/1
chr1 169391154 rs3820059 A G . PASS 0.6422000 0.7176000 0.9236000 0.6690000 0.5102000 0.6889000 35.67 70.0 54 896.78 11.11 50.00 0 50.00 0/1
chr1 169394226 rs10919168 A G . PASS 0.7269000 0.7795000 0.9355000 0.7346000 0.6278000 0.7584000 35.8 70.0 22 307.01 12.73 45.45 0 45.45 0/1
chr1 169435027 rs2678166 C T . PASS 1.0000000 0.9942000 1.0000000 0.9930000 0.9990000 0.9976000 37.0 70.0 15 591.07 0.00 100.00 0 100.00 1/1
chr1 169483561 rs6027 T C . PASS 0.0023000 0.0908000 0.0317000 0.0656000 0.0644000 0.0453000 36.62 70.0 69 1000.00 4.80 46.38 0 46.38 0/1
chr1 169484552 rs3820060 T G . PASS 0.2496000 0.4928000 0.2798000 0.3151000 0.3906000 0.3301000 35.8 70.0 10 366.07 0.00 100.00 0 100.00 1/1
chr1 169487821 rs6013 G T . PASS 0.0076000 0.0908000 0.0317000 0.0656000 0.0573000 0.0453000 36.29 70.0 35 556.12 10.08 48.57 0 48.57 0/1
chr1 169492676 rs9332643 C T . PASS 0.1679000 0.3963000 0.2460000 0.2475000 0.3241000 0.2618000 37.0 70.0 14 343.10 2.86 71.43 0 71.43 0/1
chr1 169494196 rs2301515 C T . PASS 0.3820000 0.6009000 0.8879000 0.3410000 0.5603000 0.5407000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 169498834 rs6009 T C . PASS 0.8805000 0.9496000 1.0000000 0.9324000 0.9407000 0.9363000 36.75 69.58 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 169498975 rs6030 T C . PASS 0.1732000 0.4885000 0.2837000 0.3111000 0.3875000 0.3087000 36.59 70.0 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 169499951 rs9332620 C T . PASS 0.1641000 0.3977000 0.2480000 0.2495000 0.3231000 0.2616000 37.0 70.0 12 98.49 33.33 33.33 0 33.33 0/1
chr1 169509483 rs9332609 T G . PASS 0.0045000 0.0922000 0.0327000 0.0616000 0.0644000 0.0455000 36.59 70.0 45 1000.00 5.21 64.44 0 64.44 0/1
chr1 169510348 rs1800595 T C . PASS 0.0045000 0.0922000 0.0327000 0.0616000 0.0644000 0.0455000 36.03 69.62 187 1000.00 3.57 52.94 0 52.94 0/1
chr1 169510380 rs9287090 G A . PASS 0.1717000 0.3948000 0.2480000 0.2535000 0.3211000 0.2636000 36.2 69.77 203 1000.00 5.19 36.95 0 36.95 0/1
chr1 169510524 rs1800594 A G . PASS 0.1778000 0.4870000 0.2808000 0.3151000 0.3855000 0.3095000 36.28 69.14 249 1000.00 0.00 100.00 0 100.00 1/1
chr1 169511555 rs6032 T C . PASS 0.1679000 0.3948000 0.2480000 0.2535000 0.3221000 0.2628000 37.0 70.0 70 1000.00 11.43 50.00 0 50.00 0/1
chr1 169511734 rs4525 T C . PASS 0.1679000 0.3948000 0.2480000 0.2535000 0.3221000 0.2628000 37.0 70.0 50 819.52 17.00 48.00 0 48.00 0/1
chr1 169511755 rs4524 T C . PASS 0.1679000 0.3948000 0.2480000 0.2535000 0.3425000 0.2668000 35.67 70.0 48 914.83 17.59 56.25 0 56.25 0/1
chr1 169511878 rs6018 T G . PASS 0.0045000 0.0922000 0.0327000 0.0616000 0.0644000 0.0455000 35.91 70.0 47 716.84 6.38 46.81 0 46.81 0/1
chr1 169512027 rs6021 T C . PASS 0.1679000 0.3948000 0.2480000 0.2535000 0.3221000 0.2628000 37.0 70.0 55 637.39 1.82 36.36 0 36.36 0/1
chr1 169512039 rs6024 T C . PASS 0.0045000 0.0922000 0.0327000 0.0616000 0.0644000 0.0455000 36.47 70.0 64 1000.00 1.39 70.31 0 70.31 0/1
chr1 169512093 rs6017 A G . PASS 0.1679000 0.3948000 0.2480000 0.2535000 0.3221000 0.2628000 36.67 70.0 84 1000.00 14.29 42.86 0 42.86 0/1
chr1 169512120 rs6016 G A . PASS 0.1679000 0.3948000 0.2480000 0.2535000 0.3221000 0.2628000 36.72 70.0 89 1000.00 3.61 48.31 0 48.31 0/1
chr1 169513583 rs6037 G T . PASS 0.0053000 0.1009000 0.0298000 0.0736000 0.0726000 0.0503000 36.62 70.0 50 1000.00 12.50 64.00 0 64.00 0/1
chr1 169515726 rs6036 C T . PASS 0.0053000 0.1037000 0.0298000 0.0736000 0.0736000 0.0509000 35.67 70.0 102 1000.00 12.16 44.12 0 44.12 0/1
chr1 169515874 rs13306345 T A . PASS 0.1989000 0.3746000 0.2202000 0.2376000 0.3119000 0.2574000 37.0 70.0 27 341.59 6.06 40.74 0 40.74 0/1
chr1 169515916 rs13306344 G A . PASS 0.1952000 0.3372000 0.2202000 0.1909000 0.3016000 0.2398000 37.0 70.0 19 286.28 14.04 47.37 0 47.37 0/1
chr1 169519049 rs6025 T C . PASS 1.0000000 0.9899000 1.0000000 0.9881000 0.9888000 0.9940000 36.35 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 169519894 rs6015 G A . PASS 0.0053000 0.1023000 0.0298000 0.0736000 0.0746000 0.0509000 35.5 70.0 114 1000.00 7.08 49.12 0 49.12 0/1
chr1 169521853 rs6033 A G . PASS 0.0053000 0.0980000 0.0298000 0.0726000 0.0746000 0.0501000 37.0 70.0 71 1000.00 1.66 54.93 0 54.93 0/1
chr1 169580717 rs3917731 T C . PASS 0.0492000 0.1427000 0.0010000 0.2565000 0.1196000 0.1078000 36.08 70.0 58 854.97 1.06 44.83 0 44.83 0/1
chr1 169580972 rs3917730 C CAT . PASS 0.5711000 0.3055000 0.2024000 0.4583000 0.4213000 0.4081000 37.0 70.0 24 493.24 6.67 62.50 0 62.50 0/1
chr1 169586281 rs72712022 C T . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 35.15 70.0 21 423.32 6.59 61.90 0 61.90 0/1
chr1 169591080 rs3917688 C T . PASS 0.5772000 0.3934000 0.3294000 0.5089000 0.3722000 0.4481000 37.0 70.0 106 1000.00 10.55 41.51 0 41.51 0/1
chr1 169591093 rs3917687 A G . PASS 0.0348000 0.1527000 0.0020000 0.2575000 0.1186000 0.1056000 36.51 70.0 116 1000.00 7.67 42.24 0 42.24 0/1
chr1 169599254 rs732314 T C . PASS 0.6611000 0.3934000 0.3343000 0.5109000 0.3569000 0.4687000 37.0 70.0 27 471.04 4.76 51.85 0 51.85 0/1
chr1 169890933 rs518928 A G . PASS 0.9992000 0.9568000 0.9901000 0.8966000 0.9254000 0.9565000 36.13 69.64 55 1000.00 0.00 100.00 0 100.00 1/1
chr1 169923041 rs375091647,rs35674215 G GT . PASS 0.0431000 0.2709000 0.4911000 0.3072000 0.2035000 0.2492000 35.5 70.0 15 551.46 0.00 100.00 0 100.00 1/1
chr1 169941761 rs511443 A T . PASS 0.9977000 0.9568000 0.9980000 0.8966000 0.9254000 0.9577000 36.4 70.0 20 783.76 0.00 100.00 0 100.00 1/1
chr1 169947146 rs11396984 C CA . PASS 0.6861000 0.7277000 0.7530000 0.7117000 0.6217000 0.6979000 37.0 70.0 13 415.10 6.99 84.62 0 92.31 1/1
chr1 169951748 rs638486 A G . PASS 0.9977000 0.9568000 0.9980000 0.8976000 0.9254000 0.9579000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 169951997 rs33943686 C T . PASS 0.0870000 0.2867000 0.5030000 0.3260000 0.2280000 0.2740000 37.0 70.0 73 1000.00 5.65 43.84 0 43.84 0/1
chr1 169952385 rs2057249 G T . PASS 0.9992000 0.9568000 0.9980000 0.8976000 0.9254000 0.9583000 37.0 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 169985796 rs16862933 A G . PASS 0.0106000 0.2723000 0.4841000 0.2952000 0.1800000 0.2324000 37.0 70.0 16 295.30 13.89 56.25 0 56.25 0/1
chr1 170135669 rs6427234 C T . PASS 0.5076000 0.2421000 0.1349000 0.2724000 0.2137000 0.2911000 36.43 70.0 61 649.09 6.40 34.43 0 34.43 0/1
chr1 170135760 rs6427235 T C . PASS 0.5076000 0.2435000 0.1349000 0.2724000 0.2137000 0.2913000 37.0 70.0 81 1000.00 6.41 45.68 0 45.68 0/1
chr1 170135765 rs6669514 T C . PASS 0.4758000 0.2219000 0.1349000 0.2207000 0.1933000 0.2656000 37.0 70.0 82 1000.00 5.14 45.12 0 45.12 0/1
chr1 170501385 rs7531125 A C . PASS 0.7322000 0.9870000 1.0000000 1.0000000 1.0000000 0.9275000 35.99 70.0 95 1000.00 0.00 100.00 0 100.00 1/1
chr1 170508755 rs141412003,rs5778667 G GT . PASS 0.0310000 0.3084000 0.5724000 0.1809000 0.1933000 0.2402000 34.33 70.0 16 255.70 6.94 56.25 0 56.25 0/1
chr1 170511604 rs7538037 T C . PASS 0.0454000 0.3761000 0.6776000 0.3211000 0.5368000 0.3698000 35.0 70.0 21 381.55 9.52 57.14 0 57.14 0/1
chr1 170521376 rs913257 G A . PASS 0.5257000 0.5865000 0.8770000 0.4692000 0.5215000 0.5927000 36.58 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 170927571 rs200635156 T TTC . PASS . . . . . . 32.5 70.0 18 51.85 11.11 22.22 0 22.22 0/1
chr1 170927615 rs17563089 A G . PASS 0.0204000 0.0937000 0.0000000 0.1163000 0.0665000 0.0547000 35.0 70.0 27 124.88 22.22 22.22 0 22.22 0/1
chr1 170928516 rs77715144 A AAAATAAAT . PASS 0.0197000 0.0937000 0.0000000 0.1163000 0.0665000 0.0545000 36.0 70.0 11 81.92 0.00 36.36 0 36.36 0/1
chr1 170931197 rs17563350 A G . PASS 0.0204000 0.0937000 0.0000000 0.1173000 0.0665000 0.0549000 35.0 68.33 18 390.58 0.00 66.67 0 66.67 0/1
chr1 170959029 rs16863922 C T . PASS 0.4047000 0.1873000 0.0010000 0.2227000 0.1452000 0.2061000 35.67 70.0 46 556.93 6.76 39.13 0 39.13 0/1
chr1 170959088 rs28634500 C T . PASS 0.4614000 0.1902000 0.0010000 0.2227000 0.1452000 0.2214000 36.48 70.0 60 735.64 11.74 38.33 0 38.33 0/1
chr1 170965681 rs9427213 T C . PASS 0.2405000 0.1369000 0.0000000 0.1382000 0.0757000 0.1250000 36.58 69.65 94 1000.00 1.01 60.64 0 60.64 0/1
chr1 171061990 rs2064074 A G . PASS 0.5061000 0.5389000 0.3849000 0.4304000 0.5164000 0.4730000 37.0 70.0 23 274.23 16.43 39.13 0 39.13 0/1
chr1 171076966 rs2266782 G A . PASS 0.4955000 0.3199000 0.1905000 0.3668000 0.3108000 0.3478000 36.37 70.0 78 1000.00 10.66 48.72 0 48.72 0/1
chr1 171077198 rs1920149 G A . PASS 0.7405000 0.5648000 0.3849000 0.4304000 0.5164000 0.5385000 35.5 70.0 45 476.39 5.00 35.56 0 35.56 0/1
chr1 171077372 rs2066534 C G . PASS 0.2723000 0.2104000 0.0238000 0.1938000 0.2771000 0.1989000 36.14 70.0 62 922.32 0.00 45.16 0 45.16 0/1
chr1 171168583 . TCA TTG . PASS . . . . . . 36.48 70.0 107 1000.00 5.28 42.99 0 42.99 0/1
chr1 171174531 rs2020863 A G . PASS 0.0424000 0.2277000 0.2371000 0.0905000 0.2618000 0.1597000 35.34 69.31 61 947.23 7.69 47.54 0 47.54 0/1
chr1 171178257 rs2234889 C CT . PASS 0.0968000 0.2305000 0.2361000 0.0905000 0.2638000 0.1747000 35.5 70.0 51 735.15 0.17 45.10 0 45.10 0/1
chr1 171218955 rs4480395 T A . PASS 0.5696000 0.6037000 0.6111000 0.3579000 0.5726000 0.5407000 36.16 70.0 99 1000.00 4.78 57.58 0 57.58 0/1
chr1 171227216 rs10912675 T C . PASS 0.7663000 0.3444000 0.1855000 0.2833000 0.3845000 0.4193000 37.0 70.0 86 1000.00 4.04 44.19 0 44.19 0/1
chr1 171244759 rs2076320 A C . PASS 0.0877000 0.2709000 0.1806000 0.1431000 0.1483000 0.1548000 37.0 70.0 12 219.66 0.00 58.33 0 58.33 0/1
chr1 171300959 rs2294482 T C . PASS 0.1377000 0.4006000 0.4365000 0.2435000 0.2863000 0.2845000 36.54 70.0 34 939.21 9.95 76.47 0 76.47 0/1
chr1 171302094 rs4140632 A C . PASS 0.7867000 0.5778000 0.4603000 0.4592000 0.5890000 0.5877000 35.29 70.0 16 195.60 19.64 43.75 0 43.75 0/1
chr1 171303836 rs45599742 G A . PASS 0.0008000 0.0014000 0.0000000 0.0050000 0.0000000 0.0013978 37.0 70.0 56 1000.00 8.40 60.71 0 60.71 0/1
chr1 171303925 rs3820170 C T . PASS 0.6982000 0.5576000 0.4563000 0.4304000 0.5215000 0.5417000 37.0 70.0 21 572.64 1.19 76.19 0 76.19 0/1
chr1 171308832 rs2223477 A G . PASS 0.6634000 0.3069000 0.4087000 0.3499000 0.4581000 0.4597000 36.6 70.0 55 1000.00 4.24 54.55 0 54.55 0/1
chr1 171309078 rs12057885 C G . PASS 0.6634000 0.3069000 0.4087000 0.3499000 0.4581000 0.4597000 37.0 70.0 56 839.08 14.71 44.64 0 44.64 0/1
chr1 171311003 rs1042772 A C . PASS 0.7685000 0.4207000 0.4206000 0.4771000 0.6851000 0.5755000 37.0 70.0 24 308.84 1.67 41.67 0 41.67 0/1
chr1 171483662 rs200071125 AT A . PASS 0.0159000 0.0014000 0.0000000 0.0050000 0.0010000 0.0055910 36.28 70.0 30 606.52 6.67 60.00 0 60.00 0/1
chr1 171491264 rs3736679 T A . PASS 0.4992000 0.5000000 0.5972000 0.4970000 0.5593000 0.5304000 37.0 70.0 21 837.55 0.00 100.00 0 100.00 1/1
chr1 171496895 rs10753126 A G . PASS 0.7474000 0.7349000 0.8988000 0.8161000 0.8548000 0.8109000 36.4 70.0 20 787.91 0.00 100.00 0 100.00 1/1
chr1 171509058 rs2015996 G A . PASS 0.7383000 0.7320000 0.8958000 0.8161000 0.8548000 0.8075000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 171509327 rs760644 G A . PASS 0.7179000 0.7248000 0.8958000 0.8151000 0.8548000 0.8009000 36.5 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 171511039 rs1687064 C G . PASS 0.7474000 0.7349000 0.8958000 0.8161000 0.8548000 0.8103000 36.51 70.0 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 171511442 rs2272810 A G . PASS 0.1657000 0.4712000 0.5982000 0.4930000 0.5276000 0.4315000 37.0 70.0 17 674.61 0.00 100.00 0 100.00 1/1
chr1 171514731 rs235468 C G . PASS 0.7277000 0.7305000 0.8968000 0.8161000 0.8548000 0.8047000 36.66 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 171514848 rs57131009,rs144272003 T TTTTA . PASS . . . . . . 36.5 70.0 24 155.10 2.38 29.17 0 29.17 0/1
chr1 171514875 rs77131029,rs144856960 T TATTC . PASS 0.0068000 0.1643000 0.3829000 0.1809000 0.0736000 0.1524000 36.54 70.0 21 404.74 10.26 61.90 0 61.90 0/1
chr1 171526570 rs1687057 G A . PASS 0.7474000 0.7349000 0.8958000 0.8161000 0.8548000 0.8103000 36.57 70.0 140 1000.00 0.00 100.00 0 100.00 1/1
chr1 171526910 rs12025905 G A . PASS 0.1097000 0.1427000 0.1637000 0.1233000 0.0603000 0.1182000 36.58 70.0 120 1000.00 0.79 47.50 0 47.50 0/1
chr1 171527322 rs235482 A G . PASS 0.7474000 0.7349000 0.8968000 0.8161000 0.8548000 0.8105000 36.33 70.0 18 704.37 0.00 100.00 0 100.00 1/1
chr1 171536106 rs11580526 G A . PASS 0.0030000 0.0317000 0.0010000 0.0746000 0.0133000 0.0230000 37.0 70.0 10 146.28 60.00 50.00 0 50.00 0/1
chr1 171546833 rs6685179 C A . PASS 0.5620000 0.6081000 0.8343000 0.6292000 0.6513000 0.6542000 36.14 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 171548617 rs3817772 G A . PASS 0.1422000 0.3228000 0.5933000 0.3131000 0.1360000 0.2911000 36.75 70.0 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 171548868 rs235489 T C . PASS 0.7678000 0.7349000 0.8988000 0.8181000 0.8558000 0.8169000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 171556165 rs235501 G C . PASS 0.7088000 0.7320000 0.8958000 0.8151000 0.8221000 0.7931000 36.51 70.0 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 171605387 rs56314834 T C . PASS 0.0008000 0.0029000 0.0000000 0.0070000 0.0000000 0.0019968 36.64 69.39 65 1000.00 1.77 50.77 0 50.77 0/1
chr1 171607702 rs2032555 C T . PASS 0.8865000 0.6542000 0.7917000 0.7147000 0.8037000 0.7845000 36.61 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 171652584 rs236893 A G . PASS 0.9962000 0.9251000 0.9990000 0.9354000 0.9877000 0.9730000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 171751051 rs2294719 A G . PASS 0.5666000 0.4092000 0.6567000 0.4423000 0.2986000 0.4856000 35.29 70.0 17 196.74 10.08 41.18 0 41.18 0/1
chr1 171751236 rs2294720 T C . PASS 0.7300000 0.4395000 0.6577000 0.4443000 0.2996000 0.5337000 36.64 70.0 72 1000.00 5.81 45.83 0 45.83 0/1
chr1 171755182 rs2232819 G A . PASS 0.0212000 0.1138000 0.1329000 0.1968000 0.0890000 0.1050000 35.91 69.39 82 1000.00 6.58 40.24 0 40.24 0/1
chr1 171761458 rs2232824 T C . PASS 0.2655000 0.1210000 0.1329000 0.1978000 0.1043000 0.1737000 37.0 70.0 11 185.05 3.03 54.55 0 54.55 0/1
chr1 171763549 rs2232825 C T . PASS 0.0234000 0.1556000 0.1329000 0.2177000 0.0930000 0.1164000 36.54 70.0 108 1000.00 4.56 48.15 0 48.15 0/1
chr1 171810960 rs12239702 A G . PASS 0.6838000 0.5821000 0.7907000 0.5437000 0.5286000 0.6328000 36.65 70.0 103 1000.00 0.00 100.00 0 100.00 1/1
chr1 171811031 rs73031718 G C . PASS 0.0545000 0.1715000 0.1111000 0.1541000 0.1534000 0.1214000 35.67 70.0 39 573.85 6.84 46.15 0 46.15 0/1
chr1 172038079 rs12760234 T C . PASS 0.0658000 0.3602000 0.1637000 0.4076000 0.3344000 0.2474000 37.0 70.0 34 784.14 8.56 64.71 0 64.71 0/1
chr1 172356437 rs6688654 A G . PASS 1.0000000 0.9942000 1.0000000 0.9871000 1.0000000 0.9966000 36.84 70.0 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 172356582 rs2269612 G A . PASS 0.0976000 0.6412000 0.8700000 0.5805000 0.5685000 0.5174000 35.8 70.0 19 316.03 11.58 52.63 0 52.63 0/1
chr1 172410967 rs1063412 G A . PASS 0.0605000 0.5360000 0.6597000 0.5994000 0.5675000 0.4543000 36.35 70.0 73 1000.00 1.18 50.68 0 50.68 0/1
chr1 172411496 rs2230471 A G . PASS 0.9047000 0.9092000 1.0000000 0.8499000 0.9591000 0.9241000 36.66 69.06 81 1000.00 16.30 43.21 0 43.21 0/1
chr1 172417781 rs2157451 A G . PASS 0.9871000 0.9179000 1.0000000 0.8519000 0.9591000 0.9475000 35.0 70.0 11 173.03 18.18 54.55 0 54.55 0/1
chr1 172425529 rs2285170 C G . PASS 0.0363000 0.4914000 0.6567000 0.5149000 0.5419000 0.4191000 35.5 70.0 16 237.37 12.50 50.00 0 50.00 0/1
chr1 172431210 rs4916261 G A . PASS 0.6967000 0.8530000 1.0000000 0.8072000 0.9346000 0.8480000 37.0 70.0 10 188.05 6.67 60.00 0 60.00 0/1
chr1 172434375 rs2901655 G A . PASS 0.6959000 0.8530000 1.0000000 0.8072000 0.9346000 0.8478000 37.0 70.0 20 157.95 3.33 30.00 0 30.00 0/1
chr1 172437592 rs1129942 G A . PASS 0.6710000 0.8516000 1.0000000 0.8072000 0.9356000 0.8413000 37.0 70.0 46 455.63 2.61 32.61 0 32.61 0/1
chr1 172501643 rs2239816 T C . PASS 0.2118000 0.2104000 0.1885000 0.2515000 0.3906000 0.2498000 37.0 70.0 37 649.80 24.47 51.35 0 51.35 0/1
chr1 172502041 rs10798043 A G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 172502340 rs2285143 T C . PASS 0.6006000 0.2493000 0.1895000 0.2545000 0.4162000 0.3636000 37.0 70.0 37 983.96 6.41 72.97 0 72.97 0/1
chr1 172502479 rs2285144 T C . PASS 0.7171000 0.4611000 0.3790000 0.5835000 0.7311000 0.5895000 36.38 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 172502727 rs55696309 TA T . PASS 0.2307000 0.2089000 0.1885000 0.2515000 0.3906000 0.2546000 37.0 70.0 10 94.96 0.00 40.00 0 40.00 0/1
chr1 172522602 rs1159378 G A . PASS 0.3797000 0.2320000 0.1994000 0.2306000 0.3885000 0.2947000 37.0 70.0 16 86.46 25.00 25.00 0 25.00 0/1
chr1 172547465 rs2285664 A G . PASS 0.2368000 0.2089000 0.2024000 0.2296000 0.3885000 0.2542000 36.04 70.0 44 855.33 4.00 56.82 0 56.82 0/1
chr1 172607949 rs1894626 A G . PASS 0.4614000 0.3862000 0.3819000 0.4781000 0.6851000 0.4820000 36.37 70.0 76 1000.00 0.00 100.00 0 100.00 1/1
chr1 172624758 rs68098495,rs371404931 AAGG A . PASS 0.5053000 0.3775000 0.3681000 0.4294000 0.5961000 0.4625000 37.0 70.0 12 50.17 50.00 25.00 0 25.00 0/1
chr1 172624864 rs2859242 C T . PASS 0.5068000 0.3761000 0.3681000 0.4284000 0.5859000 0.4605000 36.67 70.0 79 1000.00 5.84 45.57 0 45.57 0/1
chr1 172624910 rs2859243 G C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.82 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 172634734 rs2639653 T C . PASS 1.0000000 0.9942000 1.0000000 0.9831000 1.0000000 0.9958000 37.0 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 173223863 rs844648 G A . PASS 0.4985000 0.5159000 0.4454000 0.4095000 0.4018000 0.4535000 37.0 70.0 48 825.54 0.00 50.00 0 50.00 0/1
chr1 173455644 rs72709303 C G . PASS 0.0000000 0.0029000 0.0000000 0.0070000 0.0000000 0.0017971 37.0 70.0 11 264.43 0.00 72.73 0 72.73 0/1
chr1 173470303 . A T . PASS . . . . . . 37.0 70.0 17 79.29 41.18 23.53 0 23.53 0/1
chr1 173472465 rs72709309 G A . PASS 0.0008000 0.0346000 0.0000000 0.0417000 0.0092000 0.0151760 37.0 70.0 47 536.17 1.50 36.17 0 36.17 0/1
chr1 173794587 . CA C . PASS . . . . . . 34.83 70.0 29 1000.00 0.00 100.00 1 100.00 1/1
chr1 173794587 rs139694771 CATTATTATT C . PASS . . . . . . 33.8 70.0 28 253.36 35.71 35.71 1 100.00 0/1
chr1 173794587 . CATTATTATT CATT . PASS . . . . . . . . 28 253.36 19.84 64.29 1 100.00 0/1
chr1 173794588 . AT A . PASS . . . . . . 34.83 70.0 29 1000.00 0.00 100.00 1 100.00 1/1
chr1 173794589 . TT T . PASS . . . . . . 34.83 70.0 29 1000.00 0.00 100.00 1 100.00 1/1
chr1 173797451 rs55878143 T C . PASS . . . . . . 35.8 68.0 33 273.89 32.73 30.30 0 30.30 0/1
chr1 173832772 rs11438260 C CA . PASS 0.5840000 0.3458000 0.5942000 0.3360000 0.3405000 0.4557000 36.14 70.0 90 1000.00 0.34 43.33 0 43.33 0/1
chr1 173855298 rs1322775 A T . PASS 0.8442000 0.3718000 0.5913000 0.3410000 0.3753000 0.5351000 36.59 70.0 50 1000.00 0.97 58.00 0 58.00 0/1
chr1 173878832 rs5878 T C . PASS 0.8442000 0.3732000 0.5923000 0.3469000 0.3701000 0.5357000 36.51 69.18 106 1000.00 11.13 46.23 0 46.23 0/1
chr1 173878862 rs5877 T C . PASS 0.8366000 0.4251000 0.6190000 0.3400000 0.3722000 0.5453000 36.76 69.2 103 1000.00 15.50 48.54 0 48.54 0/1
chr1 173961807 rs377599781 AAC A . PASS . . . . . . 37.0 70.0 14 85.92 0.00 28.57 0 28.57 0/1
chr1 174188285 rs2103640 G A . PASS 0.4002000 0.3112000 0.0615000 0.2753000 0.2628000 0.2678000 36.14 67.14 39 422.93 15.75 35.90 0 35.90 0/1
chr1 174274062 rs2142864 A G . PASS 0.4682000 0.2954000 0.0605000 0.2386000 0.2219000 0.2680000 35.67 70.0 16 283.30 4.17 56.25 0 56.25 0/1
chr1 174274349 rs2860909 T G . PASS 0.4682000 0.2939000 0.0605000 0.2386000 0.2219000 0.2678000 36.4 70.0 38 672.40 6.84 52.63 0 52.63 0/1
chr1 174417231 rs7516240 G A . PASS 0.9977000 0.9769000 1.0000000 0.9543000 0.9908000 0.9852000 36.05 69.21 76 1000.00 0.00 100.00 0 100.00 1/1
chr1 174945171 rs142125254,rs72312832 CTGTATGACTGTGA C . PASS 0.0840000 0.1210000 0.0109000 0.2326000 0.1933000 0.1256000 36.25 70.0 26 523.99 7.69 61.54 0 61.54 0/1
chr1 174969271 rs1046439 C T . PASS 0.9818000 0.6182000 0.6161000 0.6918000 0.6748000 0.7396000 37.0 70.0 48 366.07 11.86 27.08 0 27.08 0/1
chr1 174984072 . TTC TT . PASS . . . . . . . . 11 65.92 18.18 9.09 0 54.55 0/1
chr1 174984072 rs58881659,rs199952908 TTC T . PASS 0.3222000 0.0807000 0.0288000 0.0885000 0.1022000 0.1398000 30.5 70.0 11 65.92 18.18 36.36 0 54.55 0/1
chr1 175014557 rs6425313 T C . PASS 0.9977000 0.9654000 0.9990000 0.9066000 0.9683000 0.9694000 36.64 69.82 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 175046488 rs2072033 G A . PASS 0.8533000 0.5173000 0.3819000 0.5080000 0.4888000 0.5713000 36.2 70.0 15 579.06 0.00 100.00 0 100.00 1/1
chr1 175046789 rs2072032 A G . PASS 0.8533000 0.5173000 0.3829000 0.5080000 0.4888000 0.5715000 36.45 70.0 44 1000.00 2.22 97.73 0 100.00 1/1
chr1 175052828 rs2072031 G A . PASS 0.2352000 0.3559000 0.3204000 0.2883000 0.3139000 0.2951000 37.0 70.0 12 223.80 19.05 58.33 0 58.33 0/1
chr1 175053098 rs11577778 T C . PASS 0.1460000 0.1037000 0.0585000 0.1899000 0.1339000 0.1290000 37.0 68.75 38 521.49 3.95 42.11 0 42.11 0/1
chr1 175053101 rs2072030 A T . PASS 0.7617000 0.5072000 0.3829000 0.5080000 0.4806000 0.5443000 36.65 69.41 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 175054418 rs1573759 A G . PASS 0.7980000 0.5115000 0.3829000 0.5080000 0.4908000 0.5565000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 175054548 rs1573758 C T . PASS 0.7496000 0.5072000 0.3829000 0.5080000 0.4806000 0.5411000 36.67 70.0 144 1000.00 0.00 100.00 0 100.00 1/1
chr1 175087606 rs10912888 T C . PASS 0.2738000 0.1369000 0.0526000 0.2336000 0.1370000 0.1755000 35.5 70.0 15 244.53 0.00 53.33 0 53.33 0/1
chr1 175087677 rs6656284 G A . PASS 0.9092000 0.3818000 0.0833000 0.4513000 0.3865000 0.4758000 36.45 69.95 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 175087729 rs6696455 T C . PASS 0.9100000 0.3818000 0.0704000 0.4513000 0.3855000 0.4732000 36.35 69.89 92 1000.00 0.00 100.00 0 100.00 1/1
chr1 175092674 rs2285215 C T . PASS 0.6203000 0.6671000 0.4921000 0.6421000 0.5838000 0.5982000 36.02 69.86 147 1000.00 0.00 100.00 0 100.00 1/1
chr1 175092707 rs10798333 C T . PASS 0.4297000 0.2824000 0.0972000 0.4433000 0.2004000 0.3003000 36.39 70.0 173 1000.00 0.03 45.66 0 45.66 0/1
chr1 175092840 rs2072041 T C . PASS 0.6203000 0.6671000 0.4931000 0.6421000 0.5838000 0.5984000 36.16 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 175097331 rs10912891 G A . PASS 0.3086000 0.4280000 0.3581000 0.6223000 0.3569000 0.4075000 37.0 70.0 28 468.03 0.00 50.00 0 50.00 0/1
chr1 175097349 rs7547567 C T . PASS 0.8116000 0.7435000 0.4871000 0.6680000 0.6002000 0.6667000 36.2 70.0 15 579.06 0.00 100.00 0 100.00 1/1
chr1 175097991 rs10798335 C T . PASS 0.5809000 0.4496000 0.3581000 0.6292000 0.3620000 0.4848000 37.0 70.0 27 679.90 6.63 70.37 0 70.37 0/1
chr1 175105880 rs2072037 G A . PASS 0.6740000 0.7954000 0.4851000 0.7813000 0.6524000 0.6701000 34.82 70.0 11 399.97 0.00 100.00 0 100.00 1/1
chr1 175105942 rs4650703 G A . PASS 0.9962000 0.9827000 1.0000000 0.9583000 0.9980000 0.9878000 37.0 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 175113578 rs10912897 T C . PASS 0.9962000 0.9741000 0.9970000 0.9602000 0.9959000 0.9860000 36.77 70.0 104 1000.00 0.00 100.00 0 100.00 1/1
chr1 175116252 rs4651335 C G . PASS 0.9947000 0.9049000 0.7331000 0.8459000 0.7454000 0.8510000 36.56 69.63 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 175129924 rs150137790,rs11279650 CCTTCTTCTT C . PASS . . . . . . 36.13 70.0 39 433.05 25.64 38.46 0 38.46 0/1
chr1 175129946 rs2072035 C T . PASS . . . . . . 36.04 70.0 41 864.37 14.44 60.98 0 60.98 0/1
chr1 175129955 rs3208835 G T . PASS . . . . . . 35.59 70.0 39 532.07 15.08 43.59 0 43.59 0/1
chr1 175130204 rs1057239 G A . PASS 0.3752000 0.3170000 0.1438000 0.4394000 0.2791000 0.3147000 37.0 70.0 21 280.26 9.52 42.86 0 42.86 0/1
chr1 175210458 rs11807709 A C . PASS 0.4539000 0.5086000 0.3929000 0.6571000 0.6728000 0.5327000 34.73 70.0 37 1000.00 1.50 97.30 0 100.00 1/1
chr1 175210533 rs12750655 A G . PASS 0.9327000 0.8112000 0.7917000 0.7664000 0.6840000 0.8055000 36.29 70.0 29 578.33 6.09 58.62 0 58.62 0/1
chr1 175293424 rs2213635 T C . PASS 0.8427000 0.7637000 0.7877000 0.7197000 0.6902000 0.7662000 37.0 70.0 32 748.39 1.79 65.62 0 65.62 0/1
chr1 175299301 rs2027867 T C . PASS 0.8419000 0.7637000 0.7887000 0.7187000 0.6902000 0.7660000 36.19 69.46 152 1000.00 4.09 48.68 0 48.68 0/1
chr1 175324518 . GC G . PASS . . . . . . 36.5 70.0 29 365.92 15.52 41.38 1 41.38 0/1
chr1 175324518 . GCAA GT . PASS . . . . . . . . 31 362.32 11.29 38.71 1 38.71 0/1
chr1 175324519 . CA C . PASS . . . . . . 36.5 70.0 29 365.92 15.52 41.38 1 41.38 0/1
chr1 175324521 rs55973835 A T . PASS 0.5378000 0.7450000 0.7738000 0.7515000 0.6472000 0.6783000 36.0 70.0 30 362.32 10.00 40.00 1 40.00 0/1
chr1 175324651 rs2228359 A G . PASS 0.5197000 0.7104000 0.7946000 0.6819000 0.6820000 0.6657000 36.65 69.71 147 1000.00 10.86 46.26 0 46.26 0/1
chr1 175336530 rs6697701 T C . PASS 0.5794000 0.7219000 0.7976000 0.6978000 0.6759000 0.6857000 37.0 70.0 19 160.96 19.30 31.58 0 31.58 0/1
chr1 175348723 rs859427 C T . PASS 0.6460000 0.7147000 0.8065000 0.6491000 0.6861000 0.6963000 36.84 69.73 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 175355128 rs859436 C G . PASS 0.6104000 0.7363000 0.7252000 0.5726000 0.6554000 0.6522000 37.0 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 175355152 rs72723450 C T . PASS 0.1172000 0.2550000 0.2163000 0.2137000 0.2658000 0.2047000 36.6 70.0 56 1000.00 7.14 53.57 0 53.57 0/1
chr1 175355391 rs859437 A G . PASS 0.8018000 0.8631000 0.8919000 0.7724000 0.8548000 0.8329000 36.82 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 175365663 rs859446 G A . PASS 0.5492000 0.5130000 0.6032000 0.4274000 0.4141000 0.5042000 35.96 70.0 46 765.78 4.35 50.00 0 50.00 0/1
chr1 175375334 rs859400 C T . PASS 0.4349000 0.4524000 0.5188000 0.3380000 0.3517000 0.4185000 36.51 70.0 84 1000.00 3.40 58.33 0 58.33 0/1
chr1 175375469 rs2239819 C A . PASS 0.0885000 0.3617000 0.5179000 0.2525000 0.3006000 0.2871000 37.0 70.0 103 1000.00 2.95 50.49 0 50.49 0/1
chr1 175375683 rs859399 T C . PASS 0.7625000 0.7781000 0.8194000 0.6302000 0.6462000 0.7268000 36.29 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 175375802 rs859398 T C . PASS 0.7443000 0.7781000 0.8194000 0.6302000 0.6462000 0.7220000 36.7 70.0 122 1000.00 0.00 100.00 0 100.00 1/1
chr1 175594081 rs12028779 T C . PASS 0.5265000 0.3530000 0.4812000 0.3887000 0.3446000 0.4301000 36.36 70.0 130 1000.00 9.67 43.08 0 43.08 0/1
chr1 175850724 rs566842 A G . PASS 0.7814000 0.6599000 0.7817000 0.5944000 0.5501000 0.6819000 36.08 70.0 25 423.29 1.85 52.00 0 52.00 0/1
chr1 175916267 rs6674353 T C . PASS 0.7421000 0.9784000 0.9990000 0.9950000 0.9611000 0.9201000 37.0 70.0 20 799.93 0.00 100.00 0 100.00 1/1
chr1 176012807 rs4233165 G A . PASS 0.8048000 0.9870000 0.9990000 0.9950000 0.9611000 0.9379000 36.04 70.0 25 984.75 0.00 100.00 0 100.00 1/1
chr1 176118219 rs3748618 G A . PASS 0.0378000 0.3876000 0.3542000 0.3986000 0.3067000 0.2750000 36.61 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 176585457 rs11803745 G A . PASS 0.0023000 0.0173000 0.0000000 0.0567000 0.0266000 0.0195690 34.6 65.8 15 119.23 40.00 33.33 0 33.33 0/1
chr1 176659463 rs10913241 C T . PASS 0.2247000 0.1182000 0.0010000 0.2008000 0.1677000 0.1490000 36.06 69.83 115 1000.00 0.00 100.00 0 100.00 1/1
chr1 176664842 rs12138725 C A . PASS 0.3132000 0.1729000 0.0804000 0.2793000 0.3538000 0.2480000 36.23 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 176671912 rs369562585,rs71129581,rs72294417 TGAGAGAGA T . PASS . . . . . . 36.11 70.0 95 1000.00 2.89 93.68 0 100.00 0/1
chr1 176681165 rs66731142,rs67144148 ATG A . PASS 0.6089000 0.3401000 0.0992000 0.3907000 0.5082000 0.4056000 35.0 70.0 51 1000.00 0.25 94.12 0 94.12 1/1
chr1 176734756 rs3737759 C T . PASS 0.5250000 0.2406000 0.0556000 0.3907000 0.3885000 0.3375000 36.29 70.0 17 662.60 0.00 100.00 0 100.00 1/1
chr1 176769358 rs10913256 T C . PASS 0.4690000 0.1686000 0.0020000 0.2217000 0.1708000 0.2254000 36.68 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 176809368 rs12118034 C T . PASS 0.0045000 0.0821000 0.0020000 0.2117000 0.2055000 0.0956000 36.12 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 176857347 rs2072935 A G . PASS 0.8601000 0.7233000 0.8006000 0.8588000 0.8609000 0.8291000 37.0 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 176863836 rs2281180 G C . PASS 0.8601000 0.7233000 0.8006000 0.8588000 0.8620000 0.8293000 36.85 70.0 78 1000.00 0.00 100.00 0 100.00 1/1
chr1 176863867 rs2228956 T C . PASS 0.8593000 0.7233000 0.8006000 0.8588000 0.8609000 0.8289000 36.74 70.0 91 1000.00 0.00 100.00 0 100.00 1/1
chr1 176913215 rs35968661 AT A . PASS 0.4418000 0.4078000 0.3770000 0.4453000 0.4785000 0.4319000 35.88 70.0 17 564.39 3.68 94.12 0 94.12 1/1
chr1 176992553 rs172917 A G . PASS 0.7920000 0.4957000 0.2054000 0.5895000 0.3926000 0.5142000 37.0 70.0 94 1000.00 0.00 100.00 0 100.00 1/1
chr1 176992676 rs10798496 C T . PASS 0.2640000 0.2248000 0.0030000 0.4364000 0.2454000 0.2370000 36.49 70.0 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 177158537 rs66894675 T TG . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.7 69.75 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 177158553 rs12117541 A C . PASS 0.3011000 0.4251000 0.4673000 0.4354000 0.5123000 0.4199000 36.29 69.41 93 1000.00 7.97 36.56 0 36.56 0/1
chr1 177158596 rs12120894 G A . PASS 0.3601000 0.4380000 0.4673000 0.4583000 0.5470000 0.4487000 36.31 69.77 87 1000.00 0.00 100.00 0 100.00 1/1
chr1 177158631 rs12128612 C T . PASS 0.3646000 0.4380000 0.4673000 0.4563000 0.5470000 0.4495000 36.62 69.68 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 177199323 rs3176442 C T . PASS 0.2133000 0.4135000 0.5298000 0.3757000 0.5215000 0.3976000 36.45 70.0 37 763.10 8.35 59.46 0 59.46 0/1
chr1 177236388 rs35757954 C CG . PASS 0.4909000 0.6081000 0.5427000 0.6332000 0.6288000 0.5731000 35.91 70.0 78 1000.00 2.56 56.41 0 56.41 0/1
chr1 177247854 rs3176443 C G . PASS 0.4017000 0.2061000 0.2113000 0.2187000 0.2229000 0.2646000 36.14 70.0 119 1000.00 1.05 47.06 0 47.06 0/1
chr1 177562338 rs6702691 A G . PASS 0.4856000 0.4207000 0.5625000 0.4384000 0.5072000 0.4868000 37.0 70.0 79 732.23 6.33 30.38 0 30.38 0/1
chr1 177901619 rs7531399 G A . PASS 0.1626000 0.2522000 0.1052000 0.2594000 0.2444000 0.1989000 36.85 70.0 185 1000.00 0.57 44.32 0 44.32 0/1
chr1 177901655 rs3748792 G A . PASS 0.2655000 0.2637000 0.1052000 0.2604000 0.2454000 0.2280000 36.55 70.0 256 1000.00 1.30 41.41 0 41.41 0/1
chr1 177901658 rs7554597 C T . PASS 0.2655000 0.2622000 0.1052000 0.2604000 0.2454000 0.2278000 36.64 70.0 256 1000.00 0.57 39.45 0 39.45 0/1
chr1 177901713 rs522367 T C . PASS 0.4947000 0.4438000 0.2827000 0.4433000 0.4049000 0.4171000 36.45 70.0 283 1000.00 9.95 38.87 0 38.87 0/1
chr1 177901741 rs684227 A G . PASS 0.4017000 0.6210000 0.6478000 0.5537000 0.5225000 0.5357000 36.68 70.0 284 1000.00 4.73 39.08 0 39.08 0/1
chr1 177902387 rs61745560 C A . PASS 0.2655000 0.2608000 0.1052000 0.2604000 0.2444000 0.2274000 36.59 70.0 55 997.17 2.76 52.73 0 52.73 0/1
chr1 177902482 rs3813648 G A . PASS 0.2655000 0.2622000 0.1052000 0.2604000 0.2423000 0.2272000 37.0 70.0 15 173.00 13.33 40.00 0 40.00 0/1
chr1 177902725 rs3813649 C T . PASS 0.2352000 0.2594000 0.1052000 0.2604000 0.2444000 0.2192000 37.0 70.0 120 1000.00 5.78 42.50 0 42.50 0/1
chr1 177902753 rs591120 G C . PASS 0.4644000 0.4409000 0.2808000 0.4463000 0.4049000 0.4089000 37.0 70.0 93 1000.00 3.13 37.63 0 37.63 0/1
chr1 177905469 rs7522194 C A . PASS 0.1006000 0.2349000 0.1716000 0.2624000 0.2495000 0.1951000 36.14 70.0 55 943.38 1.43 50.91 0 50.91 0/1
chr1 177906292 rs61816275 C T . PASS 0.1014000 0.2349000 0.1716000 0.2634000 0.2444000 0.1945000 37.0 70.0 24 438.30 19.23 54.17 0 54.17 0/1
chr1 177915474 rs842192 A C . PASS 0.6324000 0.8761000 0.8224000 0.8618000 0.8425000 0.7915000 37.0 70.0 58 1000.00 1.29 55.17 0 55.17 0/1
chr1 177923440 rs12129817 T G . PASS 0.1778000 0.2032000 0.0288000 0.2286000 0.2055000 0.1669000 36.23 70.0 60 1000.00 6.34 51.67 0 51.67 0/1
chr1 177929987 rs12040910 T C . PASS 0.8941000 0.7882000 0.8075000 0.7485000 0.7771000 0.8099000 37.0 70.0 71 1000.00 9.82 49.30 0 49.30 0/1
chr1 177930096 rs867275 T C . PASS 0.1082000 0.3444000 0.3105000 0.2744000 0.3701000 0.2662000 37.0 70.0 53 894.03 9.72 49.06 0 49.06 0/1
chr1 177930894 rs945641 C T . PASS 0.8933000 0.7839000 0.7718000 0.7376000 0.7740000 0.7991000 37.0 70.0 40 599.00 8.33 45.00 0 45.00 0/1
chr1 178063551 rs316255 A C . PASS 1.0000000 1.0000000 1.0000000 0.9990000 1.0000000 0.9998000 37.0 70.0 18 712.24 0.00 100.00 0 100.00 1/1
chr1 178483231 rs10913563 G A . PASS 0.2239000 0.4827000 0.4048000 0.4533000 0.3487000 0.3666000 36.19 70.0 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 178485960 rs72707045 G A . PASS 0.0000000 0.0000000 0.0010000 0.0030000 0.0020000 0.0011981 37.0 70.0 14 176.01 19.05 42.86 0 42.86 0/1
chr1 178489978 rs3813636 T G . PASS 0.2247000 0.4827000 0.4077000 0.4543000 0.3558000 0.3690000 36.38 70.0 96 1000.00 0.00 100.00 0 100.00 1/1
chr1 178528993 rs6425487 T C . PASS 0.5045000 0.7233000 0.9058000 0.8658000 0.8395000 0.7536000 37.0 69.67 12 182.04 0.00 50.00 0 50.00 0/1
chr1 178590394 rs2811300 T C . PASS 0.6566000 0.5951000 0.4256000 0.4513000 0.4581000 0.5216000 36.24 70.0 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 178716163 rs7528223 G A . PASS 0.4145000 0.1153000 0.1042000 0.1034000 0.0941000 0.1855000 37.0 69.75 24 967.01 0.00 100.00 0 100.00 1/1
chr1 178745947 rs6665037 T G . PASS 0.1415000 0.0648000 0.1012000 0.0765000 0.0736000 0.0964000 36.74 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 178780650 rs12131426 A G . PASS 0.8101000 0.5735000 0.5437000 0.5815000 0.4366000 0.6048000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 178854162 rs6425503 C T . PASS 0.8101000 0.5735000 0.5387000 0.5835000 0.4387000 0.6046000 35.67 70.0 18 692.36 0.00 100.00 0 100.00 1/1
chr1 178858711 rs10798635 C A . PASS 0.7088000 0.3401000 0.2282000 0.4175000 0.2209000 0.4071000 34.75 70.0 16 592.66 0.00 100.00 0 100.00 1/1
chr1 178858759 rs3753534 G A . PASS 0.7088000 0.3401000 0.2282000 0.4175000 0.2209000 0.4071000 36.25 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 178871217 rs2275100 G A . PASS 0.4796000 0.1182000 0.1032000 0.1024000 0.0941000 0.2027000 36.45 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 178972276 rs6425511 T C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.49 70.0 118 1000.00 0.00 100.00 0 100.00 1/1
chr1 179004658 rs7541378 A G . PASS 0.4107000 0.3588000 0.2401000 0.3738000 0.4172000 0.3630000 35.29 70.0 27 166.64 16.93 25.93 0 25.93 0/1
chr1 179041011 rs3820163 A G . PASS 0.9259000 0.5288000 0.6260000 0.6372000 0.6094000 0.6907000 36.57 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 179051300 rs2296377 T C . PASS 0.9879000 0.6441000 0.6677000 0.7117000 0.7157000 0.7672000 36.35 70.0 93 1000.00 0.00 100.00 0 100.00 1/1
chr1 179052006 rs2274227 G T . PASS 0.4644000 0.3689000 0.2867000 0.3698000 0.3906000 0.3820000 37.0 70.0 16 291.16 2.78 56.25 0 56.25 0/1
chr1 179054692 rs912758 T G . PASS 0.9259000 0.5317000 0.6091000 0.6332000 0.5961000 0.6843000 37.0 70.0 11 419.85 0.00 100.00 0 100.00 1/1
chr1 179055020 rs2296376 C T . PASS 0.1112000 0.0663000 0.2550000 0.1402000 0.0736000 0.1324000 36.11 70.0 64 878.67 4.51 42.19 0 42.19 0/1
chr1 179087934 rs2171959 T C . PASS 0.7247000 0.5274000 0.5407000 0.6163000 0.6769000 0.6292000 35.8 70.0 20 775.90 0.00 100.00 0 100.00 1/1
chr1 179089213 rs1858551 C T . PASS 0.7247000 0.5274000 0.5407000 0.6163000 0.6769000 0.6292000 36.57 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 179089475 rs9726961 C G . PASS 0.7247000 0.5274000 0.5407000 0.6163000 0.6769000 0.6292000 36.57 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 179089491 rs9728480 A C . PASS 0.7247000 0.5274000 0.5407000 0.6163000 0.6769000 0.6292000 36.43 70.0 21 825.53 0.00 100.00 0 100.00 1/1
chr1 179089518 rs9727252 C G . PASS 0.6838000 0.5144000 0.5407000 0.6163000 0.6789000 0.6170000 37.0 70.0 12 461.62 0.00 100.00 0 100.00 1/1
chr1 179190220 rs149971150 A AC . PASS 0.0000000 0.0014000 0.0000000 0.0040000 0.0000000 0.0009984 37.0 69.6 10 130.69 0.00 50.00 0 50.00 0/1
chr1 179304892 rs1034269 T C . PASS 0.3502000 0.7017000 0.8423000 0.5467000 0.6022000 0.5867000 37.0 70.0 10 229.82 0.00 70.00 0 70.00 0/1
chr1 179310262 rs11576517 C T . PASS 0.1354000 0.2406000 0.4782000 0.2406000 0.3517000 0.2823000 37.0 70.0 52 729.96 14.34 42.31 0 42.31 0/1
chr1 179312102 rs4651024 T C . PASS 0.3843000 0.4294000 0.4871000 0.5497000 0.4468000 0.4567000 37.0 70.0 55 971.56 2.08 50.91 0 50.91 0/1
chr1 179319580 rs3753527 T C . PASS 0.7307000 0.7205000 0.8700000 0.6730000 0.6646000 0.7328000 36.45 70.0 39 757.08 4.90 56.41 0 56.41 0/1
chr1 179320665 rs13306732 A G . PASS 0.2126000 0.3674000 0.4097000 0.4404000 0.4673000 0.3692000 37.0 70.0 17 292.30 11.76 52.94 0 52.94 0/1
chr1 179347832 rs10798674 T C . PASS 0.2799000 0.5274000 0.6974000 0.5159000 0.6186000 0.5118000 37.0 70.0 71 1000.00 3.82 43.66 0 43.66 0/1
chr1 179364391 rs61173288 A G . PASS 0.1884000 0.4135000 0.4246000 0.4294000 0.4335000 0.3634000 37.0 70.0 10 104.51 30.00 40.00 0 40.00 0/1
chr1 179380472 rs5779024 GT G . PASS 0.5469000 0.6455000 0.4792000 0.6938000 0.6319000 0.5931000 36.0 70.0 26 368.95 5.13 46.15 0 46.15 0/1
chr1 179416878 rs7521291 C T . PASS 0.1543000 0.3357000 0.3720000 0.4135000 0.4305000 0.3293000 37.0 70.0 31 500.77 9.89 48.39 0 48.39 0/1
chr1 179417347 rs6425558 C T . PASS 0.6785000 0.8401000 0.8016000 0.7982000 0.8344000 0.7802000 37.0 70.0 26 306.98 3.08 38.46 0 38.46 0/1
chr1 179437523 rs55704523 A T . PASS 0.0000000 0.0014000 0.0000000 0.0030000 0.0153000 0.0037939 37.0 70.0 13 383.72 8.39 84.62 0 84.62 0/1
chr1 179437827 rs7514278 G A . PASS 0.7769000 0.8948000 0.9048000 0.8936000 0.8630000 0.8592000 33.0 70.0 14 151.99 38.10 42.86 0 42.86 0/1
chr1 179452194 rs6668035 C T . PASS 0.2927000 0.5793000 0.7500000 0.5318000 0.6554000 0.5433000 37.0 70.0 28 593.34 6.30 60.71 0 60.71 0/1
chr1 179462149 rs7549194 A G . PASS 0.9932000 0.9971000 1.0000000 1.0000000 1.0000000 0.9978000 36.23 69.35 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 179494665 rs4620484 C T . PASS 0.7988000 0.9107000 0.9643000 0.9056000 0.8722000 0.8834000 37.0 70.0 13 346.11 7.69 76.92 0 76.92 0/1
chr1 179504025 rs141228272 AAAG A . PASS . . . . . . 33.83 70.0 25 333.91 20.67 48.00 0 48.00 0/1
chr1 179504043 rs6658180 C G . PASS 0.2496000 0.4035000 0.4256000 0.4115000 0.4673000 0.3814000 35.0 70.0 32 344.29 10.42 37.50 0 37.50 0/1
chr1 179520254 rs1410591 C G . PASS 0.5946000 0.6354000 0.4911000 0.6153000 0.6166000 0.5879000 36.29 70.0 17 658.45 0.00 100.00 0 100.00 1/1
chr1 179520506 rs1410592 G A . PASS 0.5946000 0.6340000 0.4911000 0.6153000 0.6166000 0.5877000 36.68 70.0 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 179522221 rs9286930 A G . PASS 0.5726000 0.4308000 0.4524000 0.3748000 0.4356000 0.4623000 36.4 70.0 40 670.53 10.00 50.00 0 50.00 0/1
chr1 179522227 rs61826364 A G . PASS 0.0378000 0.2061000 0.0516000 0.2406000 0.1840000 0.1332000 35.8 70.0 43 649.51 6.98 46.51 0 46.51 0/1
chr1 179522340 rs61826365 C G . PASS 0.0386000 0.2061000 0.0516000 0.2406000 0.1840000 0.1334000 34.0 70.0 15 73.30 60.00 26.67 0 26.67 0/1
chr1 179528917 rs12401708 G A . PASS 0.0386000 0.2061000 0.0516000 0.2396000 0.1851000 0.1334000 36.64 70.0 55 1000.00 2.42 60.00 0 60.00 0/1
chr1 179528942 rs12401711 G A . PASS 0.0386000 0.2061000 0.0516000 0.2396000 0.1851000 0.1334000 36.57 70.0 43 995.66 5.15 65.12 0 65.12 0/1
chr1 179544898 rs1079292 T C . PASS 0.8230000 0.9683000 0.9812000 0.9920000 0.9356000 0.9309000 37.0 70.0 71 1000.00 0.00 100.00 0 100.00 1/1
chr1 179556174 rs12121642 T C . PASS 0.1142000 0.1354000 0.1062000 0.2445000 0.1115000 0.1412000 35.5 70.0 18 235.50 8.33 44.44 0 44.44 0/1
chr1 179556848 rs7549026 T A . PASS 0.1142000 0.1354000 0.1062000 0.2445000 0.1115000 0.1412000 36.57 70.0 39 1000.00 2.56 71.79 0 71.79 0/1
chr1 179558324 rs368115293 G A . PASS 0.0106000 0.0072000 0.0000000 0.0119000 0.0307000 0.0121800 35.29 70.0 28 444.02 0.00 50.00 0 50.00 0/1
chr1 179561645 rs4652418 A C . PASS 0.6823000 0.8372000 0.9038000 0.7614000 0.7587000 0.7792000 37.0 70.0 16 165.85 8.33 37.50 0 37.50 0/1
chr1 179561683 rs4652419 A T . PASS 0.6815000 0.8329000 0.9038000 0.7455000 0.7566000 0.7748000 37.0 70.0 34 404.06 20.81 38.24 0 38.24 0/1
chr1 179600001 rs6704505 A G . PASS 0.0908000 0.0447000 0.1081000 0.0855000 0.0521000 0.0793000 37.0 70.0 53 935.81 5.73 50.94 0 50.94 0/1
chr1 179600042 rs72706738 G A . PASS 0.0061000 0.0115000 0.1081000 0.0219000 0.0378000 0.0367000 36.0 70.0 48 801.53 4.17 50.00 0 50.00 0/1
chr1 179604864 rs4628468 C T . PASS 0.7163000 0.8631000 0.9048000 0.7773000 0.7679000 0.7969000 37.0 70.0 55 846.25 5.09 45.45 0 45.45 0/1
chr1 179605058 rs4483370 G A . PASS 0.3616000 0.4798000 0.4782000 0.4851000 0.4438000 0.4423000 37.0 70.0 21 238.48 2.38 38.10 0 38.10 0/1
chr1 179621224 rs10913851 G A . PASS 0.0628000 0.0144000 0.1081000 0.0219000 0.0378000 0.0521000 37.0 70.0 52 1000.00 1.03 57.69 0 57.69 0/1
chr1 179631242 rs35448215 G A . PASS 0.0129000 0.0980000 0.0456000 0.2117000 0.1697000 0.1018000 37.0 70.0 19 411.59 3.51 63.16 0 63.16 0/1
chr1 179632536 rs72706766 A G . PASS 0.0628000 0.0144000 0.1081000 0.0219000 0.0378000 0.0521000 36.38 69.49 87 1000.00 5.84 44.83 0 44.83 0/1
chr1 179632727 rs7513095 G A . PASS 0.3714000 0.4784000 0.4782000 0.4871000 0.4448000 0.4453000 37.0 70.0 20 325.04 0.00 50.00 0 50.00 0/1
chr1 179784230 rs33933453 ACGCG A . PASS . . . . . . 31.2 70.0 10 314.60 0.00 100.00 0 100.00 1/1
chr1 179784249 rs111748247 G C . PASS 0.8260000 0.2795000 0.1329000 0.3141000 0.3272000 0.4105000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 179816816 rs7531195 T A . PASS 0.0976000 0.0865000 0.0079000 0.1342000 0.1309000 0.0919000 35.29 70.0 16 195.60 7.14 43.75 0 43.75 0/1
chr1 179852074 rs1281378 T C . PASS 0.3812000 0.6758000 0.7778000 0.6133000 0.6902000 0.6088000 35.36 70.0 76 621.69 3.83 28.95 0 28.95 0/1
chr1 179858444 rs2245425 G A . PASS 0.4644000 0.6916000 0.7778000 0.6064000 0.7096000 0.6354000 37.0 70.0 24 354.76 0.76 45.83 0 45.83 0/1
chr1 179876988 rs609521 C G . PASS 0.3041000 0.6715000 0.7778000 0.6093000 0.6748000 0.5841000 35.56 69.2 49 824.13 2.61 51.02 0 51.02 0/1
chr1 179887125 rs627897 G A . PASS 0.8449000 0.9510000 0.9147000 0.9523000 0.9642000 0.9185000 36.47 70.0 91 1000.00 0.00 100.00 0 100.00 1/1
chr1 179983665 rs2501607 G A . PASS 0.2481000 0.7349000 0.7004000 0.6461000 0.6483000 0.5647000 35.5 70.0 19 232.50 19.74 42.11 0 42.11 0/1
chr1 179989742 rs2477120 G C . PASS 0.2436000 0.7349000 0.7044000 0.6461000 0.6483000 0.5643000 37.0 70.0 77 1000.00 2.87 62.34 0 62.34 0/1
chr1 179993793 rs4622030 T C . PASS 0.7315000 0.9222000 0.8393000 0.8668000 0.9489000 0.8492000 35.91 70.0 11 411.98 0.00 100.00 0 100.00 1/1
chr1 180013235 rs12124336 T G . PASS 0.1271000 0.0432000 0.0020000 0.0368000 0.0706000 0.0611000 36.0 70.0 87 1000.00 14.18 41.38 0 41.38 0/1
chr1 180022343 rs9425854 T G . PASS 0.2489000 0.7349000 0.7073000 0.6461000 0.6472000 0.5661000 37.0 70.0 16 207.61 17.86 43.75 0 43.75 0/1
chr1 180053158 rs56173179 A C . PASS 0.0000000 0.0029000 0.0000000 0.0030000 0.0000000 0.0009984 37.0 70.0 23 228.31 11.96 34.78 0 34.78 0/1
chr1 180059811 rs10798729 A C . PASS 0.2489000 0.7349000 0.7083000 0.6461000 0.6472000 0.5663000 37.0 70.0 25 138.76 21.33 24.00 0 24.00 0/1
chr1 180080115 rs3767202 T G . PASS 0.1989000 0.7248000 0.7083000 0.6451000 0.6472000 0.5515000 36.14 70.0 33 436.83 7.36 42.42 0 42.42 0/1
chr1 180124288 rs77647137 G C . PASS 0.2814000 0.0490000 0.0020000 0.0686000 0.0971000 0.1142000 36.38 70.0 78 1000.00 7.69 50.00 0 50.00 0/1
chr1 180124379 rs35481032 T C . PASS 0.8116000 0.3573000 0.3433000 0.3668000 0.4080000 0.4862000 37.0 70.0 20 799.93 0.00 100.00 0 100.00 1/1
chr1 180135757 rs10715769 TG T . PASS 0.3767000 0.0778000 0.0069000 0.0964000 0.1810000 0.1663000 35.42 70.0 79 1000.00 0.39 56.96 0 56.96 0/1
chr1 180145088 rs2298206 A G . PASS 0.8094000 0.9669000 0.8472000 0.9563000 0.8978000 0.8856000 36.83 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 180155376 rs2298207 C G . PASS 0.6513000 0.7608000 0.5139000 0.7793000 0.6861000 0.6713000 36.2 70.0 80 1000.00 5.00 56.25 0 56.25 0/1
chr1 180155382 rs3216058 AG A . PASS 0.8079000 0.9294000 0.5873000 0.9374000 0.8681000 0.8181000 36.85 70.0 68 1000.00 4.52 60.29 0 60.29 0/1
chr1 180159797 rs3215795 TC T . PASS 0.7247000 0.7738000 0.5139000 0.7793000 0.6861000 0.6925000 35.81 70.0 39 489.89 1.92 41.03 0 41.03 0/1
chr1 180163578 rs67343209 G T . PASS 0.1483000 0.0965000 0.0714000 0.0477000 0.0879000 0.0937000 36.17 70.0 53 991.17 7.94 54.72 0 54.72 0/1
chr1 180165699 rs3738115 A C . PASS 0.0030000 0.0375000 0.2520000 0.0189000 0.0266000 0.0657000 37.0 70.0 40 720.16 9.29 52.50 0 52.50 0/1
chr1 180229566 rs357054 T C . PASS 0.6778000 0.6268000 0.4990000 0.5527000 0.3783000 0.5511000 36.76 70.0 208 1000.00 4.96 49.04 0 49.04 0/1
chr1 180231411 rs701762 G A . PASS 0.9365000 0.9553000 0.9901000 0.9314000 0.8763000 0.9371000 35.96 70.0 33 804.90 15.02 69.70 0 69.70 0/1
chr1 180231416 . G GAAA . PASS . . . . . . 34.14 70.0 34 742.54 24.71 29.41 0 64.71 0/1
chr1 180235728 rs16855642 C T . PASS 0.1195000 0.0187000 0.0099000 0.0149000 0.0184000 0.0427000 36.57 70.0 129 1000.00 6.84 43.41 0 43.41 0/1
chr1 180240752 rs3845397 C T . PASS 0.0983000 0.3112000 0.5615000 0.5288000 0.6043000 0.4063000 36.43 70.0 34 730.37 4.48 61.76 0 61.76 0/1
chr1 180243524 rs7536561 A G . PASS 0.1165000 0.3256000 0.5942000 0.5487000 0.6176000 0.4263000 36.76 70.0 86 1000.00 5.55 56.98 0 56.98 0/1
chr1 180257692 rs2254465 A C . PASS 0.9675000 0.9582000 0.9871000 0.9404000 0.9018000 0.9519000 37.0 70.0 12 136.12 26.67 41.67 0 41.67 0/1
chr1 180567335 rs10753220 C T . PASS 0.6891000 0.6873000 0.6607000 0.7594000 0.7117000 0.7017000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 180567390 rs10753221 C A . PASS 0.6762000 0.6859000 0.6617000 0.7594000 0.7106000 0.6981000 37.0 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 180567428 rs10798783 G A . PASS 0.3585000 0.5303000 0.6081000 0.6640000 0.6074000 0.5425000 36.37 70.0 58 574.59 19.06 32.76 0 32.76 0/1
chr1 180567541 rs10798784 A G . PASS 0.6899000 0.6873000 0.6607000 0.7614000 0.7117000 0.7023000 36.33 70.0 18 704.37 0.00 100.00 0 100.00 1/1
chr1 180757117 rs34984251 G GT . PASS 0.9985000 1.0000000 1.0000000 1.0000000 1.0000000 0.9996000 37.0 70.0 11 408.41 0.00 100.00 0 100.00 1/1
chr1 180849494 rs10914123 T C . PASS 0.5749000 0.6311000 0.8393000 0.5080000 0.5849000 0.6244000 36.1 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 180885430 rs10732273 T C . PASS 0.9773000 1.0000000 1.0000000 1.0000000 1.0000000 0.9940000 36.44 70.0 86 1000.00 0.00 100.00 0 100.00 1/1
chr1 180896902 rs3845417 A G . PASS 0.9153000 0.9885000 1.0000000 0.9990000 1.0000000 0.9758000 36.28 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 180897521 rs7544551 C T . PASS 0.7390000 0.9582000 1.0000000 0.9970000 1.0000000 0.9247000 36.33 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 180897792 rs71804221,rs71988721,rs35197779 ATGC A . PASS 0.6286000 0.5735000 0.4375000 0.6312000 0.7290000 0.6026000 34.5 69.47 91 1000.00 9.37 41.76 1 41.76 0/1
chr1 180897793 rs10554533 TG T . PASS . . . . . . 34.43 69.46 78 1000.00 1.80 47.44 1 47.44 0/1
chr1 180897794 . GC G . PASS . . . . . . 34.43 69.46 79 1000.00 3.49 46.84 1 46.84 0/1
chr1 180905352 rs3795505 C T . PASS 0.1536000 0.4006000 0.2599000 0.4245000 0.5061000 0.3325000 36.2 70.0 66 997.97 7.27 45.45 0 45.45 0/1
chr1 180905448 rs3795504 G T . PASS 0.3548000 0.4280000 0.2748000 0.4533000 0.5337000 0.4036000 37.0 70.0 52 976.43 3.85 53.85 0 53.85 0/1
chr1 180913597 rs2331995 A G . PASS 0.9871000 0.9986000 1.0000000 1.0000000 1.0000000 0.9964000 36.82 70.0 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 180934761 rs201671740,rs35849727 CGT C . PASS 0.8994000 0.8040000 0.9107000 0.7932000 0.8701000 0.8614000 36.66 67.86 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 180934977 rs4652544 C T . PASS 0.8994000 0.8040000 0.9107000 0.7932000 0.8701000 0.8614000 36.45 69.95 22 871.45 0.00 100.00 0 100.00 1/1
chr1 180953853 rs3747957 A G . PASS 0.4486000 0.6282000 0.6310000 0.5686000 0.3978000 0.5244000 36.81 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 180991665 rs12565758 C G . PASS 0.1936000 0.3732000 0.2004000 0.3419000 0.2832000 0.2672000 34.6 70.0 15 115.09 13.33 33.33 0 33.33 0/1
chr1 181018180 rs2236411 C G . PASS 0.2179000 0.0706000 0.0605000 0.0795000 0.0532000 0.1058000 37.0 68.41 30 583.18 0.78 56.67 0 56.67 0/1
chr1 181018236 rs2236410 A G . PASS 0.1263000 0.2161000 0.3502000 0.1372000 0.1616000 0.1929000 36.5 68.58 60 777.42 1.67 40.00 0 40.00 0/1
chr1 181021483 rs35223984 C T . PASS 0.0000000 0.0216000 0.0000000 0.0318000 0.0010000 0.0095847 37.0 70.0 63 1000.00 1.73 52.38 0 52.38 0/1
chr1 181022895 rs2275469 C A . PASS 0.6566000 0.5173000 0.7827000 0.2843000 0.5123000 0.5597000 37.0 70.0 12 461.62 0.00 100.00 0 100.00 1/1
chr1 181024404 rs3747956 G A . PASS 0.5340000 0.5058000 0.7609000 0.2942000 0.5072000 0.5224000 36.48 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 181058313 rs3747955 G A . PASS 0.2489000 0.4452000 0.6002000 0.3777000 0.6104000 0.4433000 37.0 69.23 66 854.90 3.03 39.39 0 39.39 0/1
chr1 181058618 rs1416829 C G . PASS 0.2489000 0.4452000 0.6012000 0.3777000 0.6115000 0.4437000 37.0 70.0 69 1000.00 10.47 44.93 0 44.93 0/1
chr1 181058643 rs1361365 A G . PASS 0.8797000 0.9856000 1.0000000 0.9990000 1.0000000 0.9661000 37.0 70.0 76 1000.00 0.00 100.00 0 100.00 1/1
chr1 181147914 rs7523662 A G . PASS 0.3654000 0.6556000 0.6885000 0.6143000 0.6145000 0.5693000 36.38 70.0 67 1000.00 0.23 58.21 0 58.21 0/1
chr1 181549547 rs10494540 T G . PASS 0.3949000 0.4323000 0.6419000 0.4881000 0.3231000 0.4545000 36.4 70.0 115 1000.00 0.29 52.17 0 52.17 0/1
chr1 181684605 rs12407563 A G . PASS 0.8321000 0.8170000 0.8056000 0.8300000 0.8937000 0.8363000 35.82 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 181686216 rs7540850 T C . PASS 0.2005000 0.6311000 0.7550000 0.6829000 0.6431000 0.5551000 37.0 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 181719679 rs704332 C T . PASS 0.4554000 0.5130000 0.7192000 0.5467000 0.5256000 0.5485000 37.0 70.0 16 632.84 0.00 100.00 0 100.00 1/1
chr1 181727273 rs704329 G A . PASS 0.1581000 0.3213000 0.3790000 0.4115000 0.4356000 0.3303000 36.57 70.0 51 971.58 2.38 54.90 0 54.90 0/1
chr1 181750469 rs704328 G T . PASS 0.1225000 0.4078000 0.3829000 0.4324000 0.1820000 0.2883000 37.0 70.0 16 628.69 0.00 100.00 0 100.00 1/1
chr1 181752923 rs36163765,rs3830692 AAGCTT A . PASS 0.8805000 0.7493000 0.8274000 0.7565000 0.8067000 0.8123000 35.48 70.0 77 1000.00 0.03 97.40 0 97.40 1/1
chr1 181759657 rs704326 G A . PASS 0.1203000 0.3242000 0.3879000 0.4314000 0.1789000 0.2764000 36.31 70.0 87 1000.00 0.00 100.00 0 100.00 1/1
chr1 181870217 rs498212 C T . PASS 0.3835000 0.5908000 0.5377000 0.6392000 0.4325000 0.5042000 36.24 69.68 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 182026813 rs12568050 G C . PASS 0.0900000 0.1210000 0.2837000 0.1471000 0.2546000 0.1769000 36.78 69.63 113 1000.00 0.56 47.79 0 47.79 0/1
chr1 182027022 rs12564283 C T . PASS 0.0862000 0.1210000 0.2827000 0.1471000 0.2546000 0.1757000 36.5 70.0 121 1000.00 3.34 39.67 0 39.67 0/1
chr1 182226882 rs12044140 G A . PASS 0.1906000 0.0807000 0.3105000 0.0825000 0.1779000 0.1753000 37.0 70.0 15 256.54 21.67 53.33 0 53.33 0/1
chr1 182427659 rs1822271 C T . PASS 0.3298000 0.2983000 0.3829000 0.2048000 0.2965000 0.3045000 37.0 70.0 17 417.60 14.71 70.59 0 70.59 0/1
chr1 182429295 rs10572829,rs57601655 CTG C . PASS . . . . . . 35.11 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 182491107 rs607269 A C . PASS 0.8805000 0.7896000 0.6131000 0.8748000 0.7423000 0.7859000 35.5 70.0 24 926.82 0.00 100.00 0 100.00 1/1
chr1 182496829 rs7535533 A G . PASS 0.1914000 0.2435000 0.4315000 0.3877000 0.3231000 0.3121000 36.52 70.0 73 1000.00 0.11 68.49 0 68.49 0/1
chr1 182501933 rs266534 C A . PASS 0.4478000 0.4784000 0.5357000 0.6581000 0.5593000 0.5337000 36.66 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 182509292 rs3856115 A G . PASS 0.4289000 0.4049000 0.4415000 0.5427000 0.5378000 0.4722000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 182509617 rs3911280 C A . PASS 0.3707000 0.3963000 0.4415000 0.5417000 0.5368000 0.4553000 37.0 70.0 18 712.24 0.00 100.00 0 100.00 1/1
chr1 182509646 rs12749557 T C . PASS 0.4289000 0.4049000 0.4415000 0.5427000 0.5378000 0.4722000 36.0 70.0 12 453.75 0.00 100.00 0 100.00 1/1
chr1 182544581 rs36053738 C T . PASS 0.0008000 0.0115000 0.0000000 0.0398000 0.0041000 0.0105830 36.31 70.0 62 1000.00 13.82 56.45 0 56.45 0/1
chr1 182551337 rs627928 A C . PASS 0.2632000 0.4424000 0.7093000 0.5686000 0.4714000 0.4798000 37.0 70.0 49 943.69 4.23 55.10 0 55.10 0/1
chr1 182554557 rs486907 C T . PASS 0.0666000 0.2233000 0.2421000 0.3708000 0.3016000 0.2306000 37.0 70.0 53 1000.00 18.04 60.38 0 60.38 0/1
chr1 182556036 rs3738579 A G . PASS 0.0658000 0.2089000 0.2450000 0.3598000 0.3037000 0.2272000 37.0 70.0 31 459.00 16.59 45.16 0 45.16 0/1
chr1 182569626 rs1144566 T C . PASS 0.9766000 0.9856000 1.0000000 0.9781000 0.9928000 0.9860000 36.4 69.75 80 1000.00 0.00 100.00 0 100.00 1/1
chr1 182571003 rs610367 C T . PASS 0.3192000 0.7089000 0.7054000 0.6064000 0.6646000 0.5761000 37.0 70.0 12 182.03 0.00 50.00 0 50.00 0/1
chr1 182571277 rs569790 C T . PASS 0.1278000 0.4683000 0.2381000 0.3817000 0.4581000 0.3127000 37.0 70.0 43 422.89 6.31 32.56 0 32.56 0/1
chr1 182573227 rs509476 T C . PASS 0.9977000 0.9885000 1.0000000 0.9781000 0.9928000 0.9920000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 182581157 rs34085461 T G . PASS 0.5121000 0.5360000 0.3413000 0.5199000 0.5900000 0.4978000 36.76 70.0 122 1000.00 9.44 40.98 0 40.98 0/1
chr1 182784022 rs2275171 T C . PASS 0.7557000 0.5058000 0.3810000 0.5696000 0.6319000 0.5841000 36.53 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 182825772 rs72727044 T A . PASS 0.0008000 0.0029000 0.0000000 0.0050000 0.0010000 0.0017971 34.6 70.0 28 272.79 14.29 35.71 0 35.71 0/1
chr1 182850727 rs6677840 T C . PASS 0.9470000 0.9899000 1.0000000 1.0000000 1.0000000 0.9846000 36.79 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 182972542 rs10911186 A G . PASS 0.3169000 0.6110000 0.6280000 0.5328000 0.5982000 0.5186000 36.81 70.0 115 1000.00 7.47 55.65 0 55.65 0/1
chr1 182993025 rs10911194 C T . PASS 0.3192000 0.6110000 0.6280000 0.5338000 0.5992000 0.5196000 35.98 70.0 117 1000.00 9.24 50.43 0 50.43 0/1
chr1 183072590 rs2296288 T C . PASS 0.3321000 0.6268000 0.6280000 0.5646000 0.6022000 0.5319000 36.61 70.0 70 1000.00 3.23 44.29 0 44.29 0/1
chr1 183077296 rs3835273 A AG . PASS 0.3313000 0.6254000 0.6290000 0.5626000 0.6022000 0.5314000 37.0 70.0 11 169.45 15.15 54.55 0 54.55 0/1
chr1 183077615 rs3765521 C T . PASS 0.2398000 0.6138000 0.6290000 0.5596000 0.6033000 0.5052000 37.0 70.0 26 348.74 17.48 42.31 0 42.31 0/1
chr1 183077618 rs3765522 C T . PASS 0.3321000 0.6254000 0.6290000 0.5626000 0.6033000 0.5317000 37.0 70.0 25 351.76 11.64 44.00 0 44.00 0/1
chr1 183079853 rs6672093 T C . PASS 0.2398000 0.6138000 0.6280000 0.5596000 0.6033000 0.5050000 37.0 70.0 28 509.81 10.00 53.57 0 53.57 0/1
chr1 183084606 rs34038496 TAC TGA . PASS . . . . . . 37.0 70.0 14 133.11 17.14 35.71 0 35.71 0/1
chr1 183085696 rs6424888 A G . PASS 0.3268000 0.6254000 0.6280000 0.5636000 0.6022000 0.5302000 35.29 70.0 24 175.68 26.19 29.17 0 29.17 0/1
chr1 183085755 rs20563 A G . PASS 0.3321000 0.6254000 0.6280000 0.5636000 0.6033000 0.5317000 36.4 70.0 51 637.42 12.35 39.22 0 39.22 0/1
chr1 183086757 rs2296292 A C . PASS 0.3321000 0.6254000 0.6280000 0.5636000 0.6033000 0.5317000 37.0 69.62 91 1000.00 5.18 58.24 0 58.24 0/1
chr1 183093875 rs20557 T C . PASS 0.3321000 0.6254000 0.6280000 0.5636000 0.6033000 0.5317000 36.71 70.0 82 1000.00 4.88 51.22 0 51.22 0/1
chr1 183094547 rs20558 T C . PASS 0.3321000 0.6254000 0.6280000 0.5636000 0.6033000 0.5317000 35.7 70.0 71 1000.00 7.61 52.11 0 52.11 0/1
chr1 183094802 rs10797850 G A . PASS 0.1089000 0.3660000 0.5159000 0.4384000 0.3333000 0.3365000 37.0 70.0 13 95.49 19.23 30.77 0 30.77 0/1
chr1 183095234 rs1886501 A G . PASS 0.3321000 0.6254000 0.6280000 0.5636000 0.6033000 0.5317000 36.67 70.0 59 1000.00 10.64 61.02 0 61.02 0/1
chr1 183095477 rs2296293 G A . PASS 0.3321000 0.6254000 0.6280000 0.5636000 0.6033000 0.5317000 34.33 70.0 19 262.25 23.39 47.37 0 47.37 0/1
chr1 183097956 rs71127335,rs34133998,rs113559578 G GTTA . PASS 0.3321000 0.6239000 0.6280000 0.5636000 0.6033000 0.5315000 36.25 70.0 30 484.20 6.67 50.00 0 50.00 0/1
chr1 183098001 rs10797851 A G . PASS 0.3321000 0.6254000 0.6280000 0.5636000 0.6022000 0.5315000 37.0 70.0 11 268.58 13.64 72.73 0 72.73 0/1
chr1 183099560 rs20559 G A . PASS 0.0008000 0.0144000 0.0000000 0.0467000 0.0204000 0.0155750 35.43 70.0 57 720.66 13.12 40.35 0 40.35 0/1
chr1 183099701 rs2296300 G A . PASS 0.3321000 0.6254000 0.6280000 0.5636000 0.6033000 0.5317000 36.5 70.0 51 804.50 5.39 47.06 0 47.06 0/1
chr1 183100555 rs2333620 T C . PASS 0.3298000 0.6239000 0.6280000 0.5636000 0.6033000 0.5310000 33.57 69.86 27 154.64 10.58 25.93 0 25.93 0/1
chr1 183100563 rs4997370 G T . PASS 0.4183000 0.6470000 0.6756000 0.5845000 0.6247000 0.5755000 35.29 69.86 21 180.55 38.10 33.33 0 33.33 0/1
chr1 183100596 rs2333619 A G . PASS 0.3313000 0.6254000 0.6240000 0.5636000 0.6033000 0.5308000 37.0 70.0 11 62.74 54.55 27.27 0 36.36 0/1
chr1 183101471 rs12061219 G A . PASS 0.3321000 0.6254000 0.6280000 0.5636000 0.6022000 0.5315000 36.0 70.0 11 107.52 54.55 36.36 0 54.55 0/1
chr1 183101686 rs12095664 G A . PASS 0.3321000 0.6254000 0.6280000 0.5636000 0.6033000 0.5317000 37.0 70.0 33 578.30 3.92 51.52 0 51.52 0/1
chr1 183104013 rs2296299 G A . PASS 0.3729000 0.4063000 0.5188000 0.4573000 0.4039000 0.4299000 37.0 70.0 21 238.49 20.24 38.10 0 38.10 0/1
chr1 183105534 rs20560 T C . PASS 0.4539000 0.6354000 0.6250000 0.5666000 0.5787000 0.5605000 34.88 70.0 27 560.33 0.87 62.96 0 62.96 0/1
chr1 183105705 rs20561 G A . PASS 0.1702000 0.3833000 0.5109000 0.4433000 0.3170000 0.3518000 35.77 70.0 64 1000.00 4.81 60.94 0 60.94 0/1
chr1 183155482 rs684527 C A . PASS 0.0666000 0.3516000 0.4315000 0.3052000 0.3088000 0.2748000 36.35 70.0 83 1000.00 9.90 44.58 0 44.58 0/1
chr1 183155700 rs6678888 C A . PASS 0.1838000 0.3934000 0.4365000 0.3201000 0.3384000 0.3213000 35.0 70.0 13 162.87 0.00 46.15 0 46.15 0/1
chr1 183155715 rs60707856 CT C . PASS 0.7118000 0.6066000 0.7014000 0.4672000 0.5378000 0.6120000 34.4 70.0 11 120.70 0.00 45.45 1 45.45 0/1
chr1 183155715 . CTC CA . PASS . . . . . . . . 11 100.36 0.00 36.36 1 36.36 0/1
chr1 183155717 rs61418038 C A . PASS 0.7118000 0.6066000 0.7014000 0.4672000 0.5378000 0.6120000 37.0 70.0 10 100.36 0.00 40.00 1 40.00 0/1
chr1 183176970 rs10668798,rs34720363 G GTT . PASS . . . . . . 35.43 70.0 60 1000.00 1.40 31.67 0 65.00 0/1
chr1 183177218 rs647347 A G . PASS 0.4713000 0.4957000 0.5734000 0.4553000 0.4928000 0.4962000 36.33 70.0 48 562.91 20.83 37.50 0 37.50 0/1
chr1 183230516 rs67770192,rs66537330 ATCCGC A . PASS 0.4924000 0.6772000 0.6310000 0.8410000 0.6677000 0.6502000 36.04 70.0 26 980.20 0.00 100.00 0 100.00 1/1
chr1 183253213 rs607332 G A . PASS 0.3994000 0.2968000 0.2480000 0.3608000 0.3875000 0.3446000 36.59 70.0 67 965.19 17.81 43.28 0 43.28 0/1
chr1 183253959 rs603850 T G . PASS 0.6014000 0.3617000 0.3244000 0.4016000 0.5337000 0.4591000 37.0 70.0 164 1000.00 1.36 48.17 0 48.17 0/1
chr1 183259125 rs2301877 G A . PASS 0.0817000 0.2882000 0.3006000 0.3787000 0.2904000 0.2548000 37.0 70.0 19 286.28 1.17 47.37 0 47.37 0/1
chr1 183486859 rs789169 G A . PASS 0.9584000 0.9135000 0.9980000 0.8698000 0.9560000 0.9419000 35.91 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 183616926 rs1174657 T C . PASS 0.4932000 0.3473000 0.2440000 0.4006000 0.3190000 0.3702000 36.34 70.0 91 1000.00 0.00 100.00 0 100.00 1/1
chr1 183617105 rs1174658 A G . PASS 0.4932000 0.3473000 0.2440000 0.4006000 0.3190000 0.3702000 36.29 70.0 85 1000.00 0.00 100.00 0 100.00 1/1
chr1 183675846 rs60540773 GC G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 35.67 69.42 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 183775638 rs11579867 A T . PASS 0.0522000 0.2320000 0.0496000 0.3231000 0.1912000 0.1581000 36.33 70.0 42 576.82 28.57 42.86 0 42.86 0/1
chr1 183816623 . CTTCA C . PASS . . . . . . 37.0 70.0 23 270.69 11.86 47.83 0 47.83 0/1
chr1 183852914 rs10797919 G C . PASS 0.4750000 0.4308000 0.5099000 0.4165000 0.4192000 0.4533000 37.0 70.0 19 365.68 11.48 57.89 0 57.89 0/1
chr1 183867085 rs3814330 C T . PASS 0.3812000 0.2795000 0.4990000 0.2714000 0.3722000 0.3670000 36.5 70.0 61 774.40 6.42 39.34 0 39.34 0/1
chr1 183871637 rs4604659 G A . PASS 0.6112000 0.5173000 0.5694000 0.5308000 0.5051000 0.5529000 37.0 70.0 13 95.48 11.54 30.77 0 30.77 0/1
chr1 183876287 rs16861715 T C . PASS 0.2088000 0.2478000 0.4970000 0.2684000 0.3476000 0.3113000 37.0 70.0 31 333.70 22.87 35.48 0 35.48 0/1
chr1 183895178 rs4328036 G A . PASS 0.5726000 0.5576000 0.5764000 0.5606000 0.5470000 0.5639000 35.91 70.0 127 1000.00 3.58 51.97 0 51.97 0/1
chr1 183942950 rs2296714 C T . PASS 0.1846000 0.5360000 0.3115000 0.7654000 0.6104000 0.4587000 35.5 70.0 16 608.82 0.00 100.00 0 100.00 1/1
chr1 183947757 rs3833521 G GA . PASS . . . . . . 37.0 70.0 10 366.64 0.00 100.00 0 100.00 1/1
chr1 184006549 rs114661926 C G . PASS 0.1203000 0.2824000 0.4425000 0.3042000 0.3211000 0.2837000 37.0 70.0 15 586.92 0.00 100.00 0 100.00 1/1
chr1 184020945 rs2274432 G A . PASS 0.1233000 0.3040000 0.4504000 0.3270000 0.3732000 0.3039000 36.43 69.84 127 1000.00 0.00 100.00 0 100.00 1/1
chr1 184023529 rs1046934 A C . PASS 0.1233000 0.3026000 0.4504000 0.3270000 0.3691000 0.3029000 35.48 70.0 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 184240508 rs10797953 C T . PASS 0.3139000 0.3674000 0.4990000 0.4453000 0.4346000 0.4085000 36.83 69.72 71 1000.00 0.00 100.00 0 100.00 1/1
chr1 184663537 rs9425343 A C . PASS 0.0356000 0.3401000 0.5784000 0.3698000 0.5440000 0.3534000 36.4 70.0 45 651.34 6.67 44.44 0 44.44 0/1
chr1 184663581 rs9425634 T C . PASS 0.1906000 0.3963000 0.5873000 0.4324000 0.5726000 0.4221000 35.8 70.0 44 646.48 20.91 45.45 0 45.45 0/1
chr1 184663643 rs34236444 TA T . PASS 0.1906000 0.3977000 0.6300000 0.4344000 0.5859000 0.4339000 37.0 70.0 29 580.77 10.14 58.62 0 58.62 0/1
chr1 184675814 rs1062994 G A . PASS 0.0257000 0.3372000 0.5784000 0.3708000 0.5440000 0.3506000 36.48 69.13 105 1000.00 0.95 43.81 0 43.81 0/1
chr1 184677464 rs3736757 G A . PASS 0.8525000 0.5101000 0.7004000 0.4761000 0.6125000 0.6520000 36.14 70.0 34 437.96 13.45 41.18 0 41.18 0/1
chr1 184681802 rs4651230 T C . PASS 0.0340000 0.3401000 0.5784000 0.3698000 0.5440000 0.3530000 35.5 70.0 11 256.57 4.55 72.73 0 72.73 0/1
chr1 184695571 rs10752941 C T . PASS 0.8381000 0.5086000 0.7004000 0.4751000 0.6166000 0.6486000 37.0 70.0 11 101.50 36.36 36.36 0 36.36 0/1
chr1 184706212 rs10711907 GT G . PASS 0.8177000 0.5072000 0.7004000 0.4751000 0.6166000 0.6430000 34.33 70.0 33 679.78 1.73 63.64 0 63.64 0/1
chr1 184764067 rs581100 C G . PASS 0.1868000 0.3660000 0.5635000 0.3459000 0.4509000 0.3710000 35.97 70.0 35 1000.00 2.18 97.14 0 100.00 1/1
chr1 184777177 rs543912 C A . PASS 0.0136000 0.2522000 0.4058000 0.1660000 0.3252000 0.2171000 36.4 70.0 41 663.37 3.17 48.78 0 48.78 0/1
chr1 184777467 rs338566 A T . PASS 0.6528000 0.3775000 0.5397000 0.2594000 0.3947000 0.4625000 37.0 70.0 11 264.43 15.91 72.73 0 72.73 0/1
chr1 184886737 rs66930146 C A . PASS 0.4425000 0.3948000 0.4157000 0.4284000 0.5429000 0.4473000 37.0 70.0 71 1000.00 10.11 47.89 0 47.89 0/1
chr1 185069561 rs1046592 A G . PASS 0.2436000 0.1441000 0.3542000 0.0636000 0.1258000 0.1929000 37.0 70.0 10 104.51 0.00 40.00 0 40.00 0/1
chr1 185113216 rs368392638,rs150245199 AAG A . PASS 0.1641000 0.1398000 0.2500000 0.0626000 0.0838000 0.1420000 36.25 70.0 14 243.99 7.14 57.14 0 57.14 0/1
chr1 185143721 rs10489579 A G . PASS 0.6982000 0.3487000 0.2718000 0.3439000 0.4008000 0.4347000 37.0 70.0 72 1000.00 2.78 50.00 0 50.00 0/1
chr1 185153545 rs76544683 G GT . PASS 0.6989000 0.3458000 0.3720000 0.3469000 0.4294000 0.4609000 37.0 70.0 11 127.69 14.55 45.45 0 45.45 0/1
chr1 185171869 rs6698109 A G . PASS 0.2179000 0.2464000 0.1964000 0.3410000 0.3885000 0.2756000 35.96 70.0 68 1000.00 2.81 67.65 0 67.65 0/1
chr1 185195953 rs3766717 C T . PASS 0.6982000 0.3444000 0.2768000 0.3449000 0.4008000 0.4353000 35.56 69.76 42 849.35 13.52 59.52 0 59.52 0/1
chr1 185219680 rs12135172 C T . PASS 0.5514000 0.3256000 0.3978000 0.3370000 0.4233000 0.4211000 35.15 70.0 59 827.93 1.69 44.07 0 44.07 0/1
chr1 185240474 rs12041704 A G . PASS 0.2428000 0.3963000 0.2450000 0.4433000 0.4642000 0.3480000 37.0 70.0 50 903.06 4.00 52.00 0 52.00 0/1
chr1 185259731 rs2378909 A G . PASS 0.3487000 0.4135000 0.2431000 0.4423000 0.4877000 0.3824000 37.0 70.0 15 256.54 1.67 53.33 0 53.33 0/1
chr1 185833565 rs7556537 A C . PASS 0.9735000 0.4438000 0.4792000 0.4493000 0.5368000 0.6100000 35.96 70.0 23 897.06 0.00 100.00 0 100.00 1/1
chr1 185988567 rs11290212 CT C . PASS 0.6672000 0.5303000 0.5516000 0.4950000 0.4519000 0.5483000 34.13 70.0 42 1000.00 3.66 92.86 0 92.86 0/1
chr1 186022032 rs10911808 T G . PASS 0.9546000 0.6657000 0.5933000 0.5249000 0.5409000 0.6747000 37.0 69.26 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 186026474 rs12129650 T C . PASS 0.5393000 0.6124000 0.5675000 0.4960000 0.4550000 0.5300000 36.55 70.0 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 186031041 rs7522627 C T . PASS 0.8495000 0.6470000 0.5903000 0.5348000 0.5849000 0.6544000 35.8 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 186039006 rs761905 C T . PASS 0.9221000 0.6585000 0.5754000 0.5040000 0.5102000 0.6514000 36.25 68.75 16 620.83 0.00 100.00 0 100.00 1/1
chr1 186050417 rs10798035 A G . PASS 0.6952000 0.6311000 0.5694000 0.4990000 0.4959000 0.5827000 35.59 69.71 70 1000.00 0.17 97.14 0 97.14 1/1
chr1 186055371 rs6425017 A G . PASS 0.9213000 0.6599000 0.5794000 0.5169000 0.5440000 0.6613000 35.7 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 186057181 rs10911816 T C . PASS 0.9690000 0.6686000 0.5942000 0.5139000 0.5900000 0.6865000 36.44 69.07 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 186081918 rs7555520 C T . PASS 0.9690000 0.6715000 0.5913000 0.5129000 0.5900000 0.6861000 37.0 69.46 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 186086578 rs10157742 G A . PASS 0.9675000 0.6700000 0.5933000 0.5030000 0.5470000 0.6755000 35.5 69.5 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 186089072 rs2891230 G A . PASS 0.2496000 0.4942000 0.5079000 0.3082000 0.4039000 0.3774000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 186089112 rs2383434 T C . PASS 0.5772000 0.5130000 0.5159000 0.3171000 0.4151000 0.4720000 36.45 70.0 22 871.45 0.00 100.00 0 100.00 1/1
chr1 186092076 rs2057388 A C . PASS 0.8850000 0.5663000 0.5724000 0.3559000 0.5153000 0.5994000 36.65 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 186101539 rs10911825 A G . PASS 0.6498000 0.4841000 0.5685000 0.2634000 0.4018000 0.4844000 36.57 70.0 71 911.40 9.86 39.44 0 39.44 0/1
chr1 186113852 rs17531405 G C . PASS 0.0076000 0.0994000 0.0149000 0.1869000 0.0583000 0.0677000 37.0 70.0 54 594.48 7.80 35.19 0 35.19 0/1
chr1 186113931 rs3737941 T G . PASS 0.5310000 0.4712000 0.5506000 0.2565000 0.3814000 0.4423000 37.0 70.0 18 368.67 10.10 61.11 0 61.11 0/1
chr1 186135236 rs6425021 G A . PASS 0.5174000 0.2046000 0.0913000 0.3221000 0.2812000 0.3029000 37.0 70.0 10 146.29 20.00 50.00 0 50.00 0/1
chr1 186141301 rs4651302 G A . PASS 0.9539000 0.6196000 0.5863000 0.4662000 0.5440000 0.6556000 36.43 70.0 21 829.68 0.00 100.00 0 100.00 1/1
chr1 186143815 rs72707483 G A . PASS 0.0000000 0.0072000 0.0000000 0.0179000 0.0031000 0.0051917 37.0 70.0 51 482.34 0.49 31.37 0 31.37 0/1
chr1 186244372 rs1293996 A G . PASS 0.4115000 0.5980000 0.5476000 0.5755000 0.6810000 0.5503000 37.0 70.0 20 241.50 0.00 40.00 0 40.00 0/1
chr1 186265948 rs1293987 T A . PASS 0.7579000 0.5562000 0.9315000 0.5577000 0.7505000 0.7232000 35.67 70.0 16 279.14 13.89 56.25 0 56.25 0/1
chr1 186277088 rs68069719 G C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.35 68.3 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 186313249 rs2950829 A G . PASS 0.9735000 0.9135000 0.9692000 0.9881000 0.9939000 0.9712000 35.4 70.0 15 567.05 0.00 100.00 0 100.00 1/1
chr1 186357523 rs1290390 T C . PASS 0.9977000 0.9135000 0.9683000 0.9881000 0.9939000 0.9774000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 186863385 rs2307193 TAA T . PASS 0.5265000 0.5865000 0.3343000 0.3360000 0.4765000 0.4481000 36.41 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 186919732 rs4650709 A T . PASS 0.9977000 0.9755000 0.9970000 0.9483000 0.9826000 0.9816000 36.0 70.0 24 938.83 0.00 100.00 0 100.00 1/1
chr1 186919993 rs969357 G A . PASS 0.9977000 0.9755000 0.9970000 0.9483000 0.9826000 0.9816000 35.59 70.0 17 650.59 0.00 100.00 0 100.00 1/1
chr1 186925168 rs5007825 A G . PASS 0.9977000 0.9755000 0.9970000 0.9483000 0.9826000 0.9816000 36.48 70.0 23 913.22 0.00 100.00 0 100.00 1/1
chr1 186925194 rs5007824 T C . PASS 0.9977000 0.9755000 0.9970000 0.9483000 0.9826000 0.9816000 37.0 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 186925552 rs2307199 T C . PASS 0.9977000 0.9755000 0.9970000 0.9483000 0.9826000 0.9816000 37.0 69.05 21 841.70 0.00 100.00 0 100.00 1/1
chr1 186946869 rs28395831 A G . PASS 0.0015000 0.0014000 0.0000000 0.0189000 0.0112000 0.0065895 37.0 70.0 57 882.00 10.12 45.61 0 45.61 0/1
chr1 186946912 rs2307198 G A . PASS 0.9985000 0.9841000 0.9980000 0.9742000 0.9816000 0.9882000 36.04 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 187276553 rs1390496 A G . PASS 0.8487000 0.7637000 0.8710000 0.7425000 0.7996000 0.8105000 35.0 70.0 23 136.92 20.29 26.09 0 26.09 0/1
chr1 187532444 rs147554046,rs3062449 T TGTGGGCTC . PASS . . . . . . 36.9 69.9 20 784.34 4.21 95.00 0 100.00 1/1
chr1 187532575 rs4651392 C T . PASS 0.0688000 0.1643000 0.0010000 0.2684000 0.1329000 0.1210000 36.4 70.0 20 787.91 0.00 100.00 0 100.00 1/1
chr1 187784824 rs6693349 G A . PASS 0.4682000 0.4813000 0.4008000 0.4453000 0.5041000 0.4589000 36.08 70.0 46 891.08 6.69 56.52 0 56.52 0/1
chr1 188219894 rs35239313 ACT A . PASS 0.6551000 0.4597000 0.4266000 0.3260000 0.3119000 0.4489000 35.67 70.0 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 188943636 rs66701550 G GT . PASS 0.7852000 0.6455000 0.5992000 0.5616000 0.6299000 0.6532000 37.0 70.0 21 222.89 7.14 38.10 0 38.10 0/1
chr1 188943726 rs12047149 A G . PASS 0.3616000 0.6138000 0.5228000 0.5785000 0.5297000 0.5054000 37.0 70.0 63 989.25 0.77 46.03 0 46.03 0/1
chr1 189555729 rs1848826 A C . PASS 0.5439000 0.4914000 0.4534000 0.5268000 0.4468000 0.4960000 36.73 70.0 87 1000.00 7.97 51.72 0 51.72 0/1
chr1 189555774 rs516084 C G . PASS 0.5522000 0.4755000 0.4554000 0.5239000 0.4499000 0.4964000 36.5 70.0 150 1000.00 1.33 48.00 0 48.00 0/1
chr1 189911084 rs7516624 C T . PASS 0.4221000 0.3934000 0.3760000 0.5427000 0.4131000 0.4313000 37.0 70.0 24 229.46 25.00 33.33 0 33.33 0/1
chr1 189958874 rs1730734 T C . PASS 0.2088000 0.1931000 0.1835000 0.2704000 0.2382000 0.2196000 36.37 70.0 41 625.76 11.81 46.34 0 46.34 0/1
chr1 190863011 rs12135498 G A . PASS 0.0893000 0.0720000 0.2302000 0.1083000 0.1769000 0.1362000 37.0 70.0 17 334.07 10.59 58.82 0 58.82 0/1
chr1 191115638 rs10753974 C T . PASS 0.6498000 0.6354000 0.6458000 0.6292000 0.5112000 0.6158000 37.0 69.89 39 602.00 23.08 46.15 0 46.15 0/1
chr1 191563157 rs6689623 C T . PASS 0.4100000 0.5014000 0.6577000 0.5467000 0.4847000 0.5146000 35.86 69.05 53 661.16 10.42 39.62 0 39.62 0/1
chr1 191863777 rs71938308,rs67717700 ATATCCACT A . PASS 0.6694000 0.4135000 0.5833000 0.5686000 0.4223000 0.5481000 36.07 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 192082721 rs10921083 A G . PASS 0.3018000 0.6398000 0.6260000 0.5885000 0.3783000 0.4864000 37.0 69.57 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 192216230 rs1175148 A G . PASS 0.7610000 0.3775000 0.1627000 0.4483000 0.4888000 0.4714000 35.98 68.59 110 1000.00 3.07 52.73 0 53.64 0/1
chr1 192216486 rs1175147 T C . PASS 0.7610000 0.3775000 0.1627000 0.4483000 0.4888000 0.4714000 37.0 70.0 48 1000.00 5.00 62.50 0 62.50 0/1
chr1 192216818 rs1175145 G A . PASS 0.7610000 0.3775000 0.1627000 0.4483000 0.4888000 0.4714000 36.54 69.92 47 900.08 6.38 55.32 0 55.32 0/1
chr1 192216848 rs1175144 C G . PASS 0.7610000 0.3775000 0.1627000 0.4483000 0.4888000 0.4714000 34.91 69.91 42 749.64 9.11 54.76 0 54.76 0/1
chr1 192335271 rs59139714 C CTAAT . PASS 0.6619000 0.3905000 0.1558000 0.5169000 0.4826000 0.4583000 36.25 70.0 23 193.87 2.17 34.78 0 34.78 0/1
chr1 192545099 rs7535818 G A . PASS 0.2882000 0.6513000 0.6419000 0.8091000 0.8793000 0.6298000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 192561545 rs2760512 A G . PASS 0.6324000 0.3256000 0.3482000 0.3241000 0.5746000 0.4595000 35.11 70.0 52 568.62 2.43 36.54 0 36.54 0/1
chr1 192780498 rs17647363 A G . PASS 0.0098000 0.1196000 0.0575000 0.1809000 0.0665000 0.0801000 36.29 70.0 17 662.60 0.00 100.00 0 100.00 1/1
chr1 192989594 rs72738589 G A . PASS 0.0023000 0.0418000 0.0000000 0.0507000 0.0072000 0.0179710 37.0 70.0 12 140.26 3.33 41.67 0 41.67 0/1
chr1 193021022 rs12123970 T A . PASS 0.0023000 0.0418000 0.0000000 0.0507000 0.0102000 0.0185700 37.0 70.0 16 500.00 3.57 87.50 0 87.50 0/1
chr1 193051685 rs2275444 G A . PASS 0.5242000 0.6614000 0.4435000 0.6849000 0.6994000 0.5935000 36.71 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 193057971 rs10737620 T A . PASS 0.5242000 0.6614000 0.4435000 0.6839000 0.6963000 0.5927000 36.4 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 193074371 rs10801175 A G . PASS 0.7466000 0.6960000 0.4454000 0.6928000 0.8160000 0.6817000 36.78 69.63 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 193074651 rs10921310 T A . PASS 0.7458000 0.6960000 0.4454000 0.6928000 0.8119000 0.6807000 36.53 68.68 76 1000.00 0.00 100.00 0 100.00 1/1
chr1 193094375 rs4466634 T C . PASS 0.5106000 0.6268000 0.4494000 0.6332000 0.7730000 0.5903000 35.08 70.0 57 792.19 2.81 43.86 0 43.86 0/1
chr1 193104827 rs10921318 G A . PASS 0.4622000 0.6182000 0.4484000 0.6332000 0.7730000 0.5761000 37.0 70.0 13 262.57 9.62 61.54 0 61.54 0/1
chr1 193150219 rs28930674 A G . PASS 0.0378000 0.0476000 0.0000000 0.0507000 0.0102000 0.0288000 37.0 70.0 61 1000.00 1.64 59.02 0 59.02 0/1
chr1 193173028 rs72740231 A G . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 35.86 70.0 36 712.34 0.79 58.33 0 58.33 0/1
chr1 193181434 rs41302543 C T . PASS 0.0008000 0.0360000 0.0000000 0.0189000 0.0020000 0.0093850 37.0 70.0 13 179.03 74.36 46.15 0 46.15 0/1
chr1 193438775 rs34936308 GA G . PASS 0.3253000 0.3646000 0.5030000 0.5129000 0.6789000 0.4732000 35.25 70.0 87 1000.00 5.34 45.98 0 45.98 0/1
chr1 194158916 rs1982793 A G . PASS 0.6967000 0.8818000 0.9980000 0.8797000 0.9151000 0.8624000 36.59 69.66 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 194294602 rs147722143 G GCACACA . PASS 0.2610000 0.5591000 0.6786000 0.6153000 0.5429000 0.5126000 36.43 70.0 73 1000.00 6.85 76.71 0 93.15 1/1
chr1 194482268 rs72735062 C T . PASS 0.0008000 0.0101000 0.0000000 0.0169000 0.0000000 0.0049920 35.8 70.0 42 625.75 6.27 45.24 0 47.62 0/1
chr1 194482304 rs2494129 C T . PASS 0.5000000 0.5504000 0.6905000 0.6481000 0.3681000 0.5493000 36.33 70.0 89 1000.00 0.00 100.00 0 100.00 1/1
chr1 195218258 rs1999129 T C . PASS 0.1127000 0.2277000 0.2024000 0.2058000 0.2434000 0.1909000 37.0 70.0 13 220.79 4.40 53.85 0 53.85 0/1
chr1 195568569 rs3904256 A T . PASS 0.4879000 0.5159000 0.5744000 0.5507000 0.6237000 0.5483000 35.67 70.0 37 579.86 14.11 48.65 0 48.65 0/1
chr1 196090171 . TA T . PASS . . . . . . 36.33 70.0 11 294.79 12.12 81.82 1 81.82 0/1
chr1 196090171 . TACACAC TACAC . PASS . . . . . . . . 12 208.24 50.00 16.67 1 75.00 0/1
chr1 196090171 rs67883815,rs149686383 TACACAC T . PASS 0.1634000 0.2565000 0.2153000 0.1252000 0.2689000 0.1989000 36.14 70.0 12 208.24 7.14 58.33 1 75.00 0/1
chr1 196090172 . AC A . PASS . . . . . . 36.33 70.0 11 294.79 12.12 81.82 1 81.82 0/1
chr1 196090268 rs56929451 TA T . PASS 0.3132000 0.4669000 0.4315000 0.3549000 0.5971000 0.4221000 36.18 70.0 45 1000.00 0.00 66.67 0 100.00 0/1
chr1 196090269 rs10801514 A T . PASS 0.8472000 0.9726000 0.9861000 0.9861000 0.9550000 0.9415000 36.18 70.0 45 1000.00 0.00 33.33 0 100.00 0/1
chr1 196227526 rs977157 A G . PASS 0.9561000 0.9914000 1.0000000 1.0000000 1.0000000 0.9872000 36.81 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 196251522 rs2477357 T C . PASS 0.3079000 0.8329000 0.9514000 0.8211000 0.8333000 0.7159000 37.0 70.0 15 591.07 0.00 100.00 0 100.00 1/1
chr1 196254970 rs2477360 C T . PASS 0.9788000 0.9957000 1.0000000 1.0000000 1.0000000 0.9938000 36.2 70.0 15 579.06 0.00 100.00 0 100.00 1/1
chr1 196398619 rs1538684 T C . PASS . . . . . . 37.0 70.0 12 140.26 33.33 41.67 0 41.67 0/1
chr1 196398974 rs12121250 T A . PASS 0.1974000 0.5202000 0.6448000 0.5915000 0.6033000 0.4906000 37.0 70.0 12 177.88 16.67 50.00 0 50.00 0/1
chr1 196438244 rs61820754 C G . PASS 0.0015000 0.0159000 0.0010000 0.0239000 0.0092000 0.0093850 36.2 70.0 26 499.67 26.15 57.69 0 57.69 0/1
chr1 196461513 rs4607811 C T . PASS 0.9410000 0.9914000 1.0000000 1.0000000 1.0000000 0.9832000 36.08 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 196642072 rs551397 C T . PASS 0.7912000 0.4193000 0.4067000 0.2604000 0.3425000 0.4681000 37.0 70.0 13 179.03 28.21 46.15 0 46.15 0/1
chr1 196642233 rs800292 G A . PASS 0.7912000 0.4193000 0.4067000 0.2604000 0.3425000 0.4681000 35.59 70.0 44 521.17 13.10 38.64 0 38.64 0/1
chr1 196642969 rs35507625,rs55714531 C CTT . PASS . . . . . . 36.45 70.0 32 366.62 14.58 37.50 0 40.62 0/1
chr1 196654324 rs1061147 A C . PASS 0.5688000 0.7565000 0.9504000 0.6382000 0.7096000 0.7131000 36.63 69.38 65 1000.00 0.00 100.00 0 100.00 1/1
chr1 196658497 rs482934 G T . PASS 0.8147000 0.7752000 0.9514000 0.6402000 0.7117000 0.7815000 37.0 70.0 13 503.38 0.00 100.00 0 100.00 1/1
chr1 196659237 rs1061170 C T . PASS 0.6377000 0.7666000 0.9514000 0.6382000 0.7127000 0.7334000 36.39 69.33 79 1000.00 0.00 100.00 0 100.00 1/1
chr1 196682346 rs7535263 G A . PASS 0.5620000 0.5504000 0.4246000 0.4235000 0.5593000 0.5044000 37.0 69.25 48 658.46 5.83 41.67 0 41.67 0/1
chr1 196682947 rs2274700 G A . PASS 0.4735000 0.5389000 0.4246000 0.4235000 0.5573000 0.4790000 37.0 70.0 72 1000.00 3.10 47.22 0 47.22 0/1
chr1 196705926 rs375046 C A . PASS 0.8290000 0.7594000 0.9405000 0.6034000 0.7178000 0.7748000 37.0 70.0 24 308.84 16.67 41.67 0 41.67 0/1
chr1 196712517 . GT G . PASS . . . . . . 37.0 61.75 17 73.88 11.76 23.53 0 23.53 0/1
chr1 196712522 rs61822180 C T . PASS . . . . . . 37.0 61.75 18 80.44 11.11 22.22 0 22.22 0/1
chr1 196712577 rs513699 T C . PASS . . . . . . 36.29 64.18 74 442.89 22.26 22.97 0 22.97 0/1
chr1 196712586 rs61822181 C T . PASS . . . . . . 36.5 64.88 85 702.17 13.33 28.24 0 28.24 0/1
chr1 196757392 rs400344 C T . PASS 0.6460000 0.6657000 0.9484000 0.5010000 0.4867000 0.6494000 37.0 64.41 64 485.00 19.30 26.56 0 26.56 0/1
chr1 196794909 rs409549 G C . PASS 0.5023000 0.5101000 0.5427000 0.4433000 0.3640000 0.4726000 35.8 65.9 17 317.90 8.24 58.82 0 58.82 0/1
chr1 196796184 rs399507 G A . PASS 0.5023000 0.5101000 0.5446000 0.4433000 0.3661000 0.4734000 35.86 70.0 39 703.30 5.13 53.85 0 53.85 0/1
chr1 196796240 rs438781 T A . PASS 0.5893000 0.5130000 0.5446000 0.4443000 0.3661000 0.4970000 37.0 70.0 16 332.93 7.50 62.50 0 62.50 0/1
chr1 196797123 rs677961 C T . PASS 0.5030000 0.5101000 0.5446000 0.4433000 0.3671000 0.4738000 37.0 56.83 11 185.04 15.15 54.55 0 54.55 0/1
chr1 196797238 rs425757 C T . PASS . . . . . . 37.0 56.4 61 201.62 41.64 16.39 0 16.39 0/1
chr1 196797244 rs113811987 C G . PASS . . . . . . 37.0 59.5 64 104.90 50.00 12.50 0 12.50 0/1
chr1 196801042 rs4230 G T . PASS 0.6157000 0.5187000 0.5437000 0.4463000 0.3783000 0.5074000 36.14 68.79 106 1000.00 0.99 39.62 0 39.62 0/1
chr1 196801078 rs414628 A T . PASS 0.3260000 0.5072000 0.5228000 0.4433000 0.3742000 0.4237000 37.0 68.54 84 1000.00 6.67 41.67 0 41.67 0/1
chr1 196801190 rs390679 C A . PASS 0.3253000 0.5072000 0.5228000 0.4433000 0.3742000 0.4235000 37.0 69.82 27 341.58 4.71 40.74 0 40.74 0/1
chr1 196874356 rs10801578 G T . PASS 0.9796000 0.9986000 1.0000000 1.0000000 1.0000000 0.9944000 36.41 69.12 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 196876458 rs7417769 A G . PASS 0.2095000 0.7305000 0.8304000 0.6839000 0.6554000 0.5891000 35.55 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 196920148 rs4085749 C T . PASS 0.0272000 0.4640000 0.7024000 0.2505000 0.3160000 0.3249000 36.41 70.0 90 1000.00 21.46 45.56 0 45.56 0/1
chr1 196967458 rs1332664 G T . PASS 0.0507000 0.4265000 0.6667000 0.1750000 0.3292000 0.3061000 36.33 70.0 25 627.99 5.78 72.00 0 72.00 0/1
chr1 197008365 rs698859 C T . PASS 0.0870000 0.2291000 0.1706000 0.4135000 0.2883000 0.2284000 37.0 70.0 12 307.34 0.00 75.00 0 75.00 0/1
chr1 197008597 rs5990 A C . PASS 0.1921000 0.6455000 0.8194000 0.5010000 0.6104000 0.5250000 37.0 70.0 26 511.68 2.56 57.69 0 57.69 0/1
chr1 197009798 rs5998 A G . PASS 0.1921000 0.6455000 0.8194000 0.5010000 0.6104000 0.5250000 36.25 68.75 54 1000.00 9.72 59.26 0 59.26 0/1
chr1 197026672 rs1759009 A G . PASS 0.6868000 0.9063000 1.0000000 0.9145000 0.9029000 0.8682000 36.14 70.0 14 537.29 0.00 100.00 0 100.00 1/1
chr1 197029644 . A G . PASS . . . . . . 37.0 70.0 46 79.72 15.94 13.04 0 13.04 0/1
chr1 197030201 rs5997 T C . PASS 0.3820000 0.8804000 1.0000000 0.9125000 0.9029000 0.7837000 35.8 70.0 20 775.90 0.00 100.00 0 100.00 1/1
chr1 197031021 rs6003 C T . PASS 0.3162000 0.8790000 0.9831000 0.9115000 0.8988000 0.7618000 36.28 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 197053373 rs12677 G A . PASS 0.3782000 0.8804000 1.0000000 0.9125000 0.9008000 0.7823000 36.54 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 197055925 rs10754213 T C . PASS 0.3790000 0.8804000 1.0000000 0.9135000 0.9008000 0.7827000 36.69 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 197059864 rs72736482 C T . PASS 0.0061000 0.0692000 0.0010000 0.1034000 0.0603000 0.0439000 37.0 70.0 11 143.27 0.00 45.45 0 45.45 0/1
chr1 197059878 rs4915315 G A . PASS 0.3419000 0.8761000 0.9831000 0.9135000 0.9008000 0.7690000 36.0 70.0 12 453.75 0.00 100.00 0 100.00 1/1
chr1 197059892 rs10754214 A G . PASS 0.2988000 0.8746000 0.9831000 0.9125000 0.9008000 0.7572000 35.0 70.0 12 441.74 0.00 100.00 0 100.00 1/1
chr1 197059928 rs4915316 A G . PASS 0.2958000 0.8746000 0.9831000 0.9125000 0.9008000 0.7564000 36.29 70.0 17 662.60 0.00 100.00 0 100.00 1/1
chr1 197063352 rs41304071 C T . PASS 0.0431000 0.2277000 0.1637000 0.4105000 0.2863000 0.2143000 37.0 70.0 27 554.59 4.17 59.26 0 59.26 0/1
chr1 197070442 rs3762271 G T . PASS 0.0431000 0.2277000 0.1637000 0.4105000 0.2863000 0.2143000 36.43 70.0 50 678.06 4.76 42.00 0 42.00 0/1
chr1 197070697 rs41310927 T C . PASS 0.0431000 0.2277000 0.1637000 0.4105000 0.2863000 0.2143000 35.97 70.0 70 1000.00 2.86 50.00 0 50.00 0/1
chr1 197070707 rs41308365 G A . PASS 0.0431000 0.2277000 0.1637000 0.4105000 0.2863000 0.2143000 36.67 69.44 73 1000.00 7.08 49.32 0 49.32 0/1
chr1 197070776 rs10922162 C T . PASS 0.0159000 0.4280000 0.6696000 0.1720000 0.3180000 0.2949000 37.0 70.0 57 589.60 14.04 33.33 0 33.33 0/1
chr1 197070815 rs1412640 T C . PASS 0.4970000 0.8934000 1.0000000 0.9125000 0.9029000 0.8159000 36.08 69.62 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 197070901 rs964201 A G . PASS 1.0000000 0.9942000 1.0000000 0.9950000 0.9959000 0.9974000 36.38 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 197072420 rs41310925 T C . PASS 0.0386000 0.2262000 0.1637000 0.4115000 0.2863000 0.2131000 37.0 70.0 58 962.53 4.19 48.28 0 48.28 0/1
chr1 197073932 rs2878749 T C . PASS 0.0431000 0.2262000 0.1647000 0.4115000 0.2863000 0.2145000 36.45 70.0 37 763.10 8.11 59.46 0 59.46 0/1
chr1 197091537 rs4915337 A T . PASS 0.3790000 0.8804000 1.0000000 0.9125000 0.9008000 0.7825000 37.0 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 197091808 rs61819088 T C . PASS 0.0386000 0.2248000 0.1637000 0.4115000 0.2863000 0.2129000 37.0 70.0 13 53.71 0.00 23.08 0 23.08 0/1
chr1 197102745 rs4915344 A G . PASS 0.0265000 0.4280000 0.6706000 0.1720000 0.3272000 0.2997000 36.14 70.0 23 471.08 16.15 60.87 0 60.87 0/1
chr1 197104149 rs35659894 TA T . PASS 0.2950000 0.8746000 0.9831000 0.9115000 0.9008000 0.7560000 36.54 70.0 13 491.97 0.00 100.00 0 100.00 1/1
chr1 197108427 rs1332662 A G . PASS 0.3389000 0.8761000 1.0000000 0.9125000 0.9008000 0.7714000 37.0 70.0 25 1000.00 0.00 100.00 0 100.00 1/1
chr1 197109042 rs1332663 C T . PASS 0.3790000 0.8804000 1.0000000 0.9125000 0.9008000 0.7825000 36.52 70.0 25 996.76 0.00 100.00 0 100.00 1/1
chr1 197112533 rs6677082 G A . PASS 0.2950000 0.8746000 0.9831000 0.9095000 0.9008000 0.7556000 36.67 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 197113073 rs1571964 G A . PASS 0.2950000 0.8746000 0.9831000 0.9095000 0.9008000 0.7556000 37.0 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 197128726 rs12128631 G A . PASS 0.0265000 0.4251000 0.6716000 0.1700000 0.3200000 0.2977000 36.5 70.0 54 795.47 0.00 44.44 0 44.44 0/1
chr1 197141243 rs6428389 A C . PASS 0.2632000 0.8069000 0.8879000 0.8459000 0.8303000 0.6921000 35.4 70.0 17 514.75 0.78 88.24 0 88.24 0/1
chr1 197147471 rs61819118 A C . PASS 0.0424000 0.2277000 0.1627000 0.4105000 0.2883000 0.2143000 35.8 70.0 31 681.46 4.84 64.52 0 64.52 0/1
chr1 197163747 . AG AGA . PASS . . . . . . . . 14 92.47 42.86 42.86 1 92.86 0/1
chr1 197163748 rs372582082 G A . PASS . . . . . . 37.0 70.0 14 92.47 107.14 28.57 1 28.57 0/1
chr1 197297540 rs12042179 A T . PASS 0.0378000 0.5461000 0.7599000 0.4235000 0.4070000 0.4032000 36.4 70.0 32 690.46 1.25 62.50 0 62.50 0/1
chr1 197316435 rs1337167 T C . PASS 0.9244000 0.7968000 0.7649000 0.7714000 0.9008000 0.8393000 37.0 70.0 27 136.89 59.26 22.22 0 22.22 0/1
chr1 197325908 rs2786098 T G . PASS 0.9251000 0.8055000 0.7649000 0.7783000 0.9039000 0.8427000 35.67 70.0 17 276.13 2.61 52.94 0 52.94 0/1
chr1 197390368 rs3902057 A G . PASS 0.7065000 0.9813000 1.0000000 0.9990000 1.0000000 0.9197000 36.83 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 197398086 rs7534863 A G . PASS 0.1952000 0.4452000 0.3363000 0.5139000 0.3804000 0.3584000 37.0 70.0 26 432.29 0.00 50.00 0 50.00 0/1
chr1 197404770 rs72740568 G T . PASS 0.0008000 0.0014000 0.0000000 0.0030000 0.0010000 0.0011981 37.0 70.0 30 708.49 3.33 66.67 0 66.67 0/1
chr1 197407886 rs5779871 A AT . PASS 0.0401000 0.2032000 0.1181000 0.2266000 0.1421000 0.1358000 37.0 70.0 18 148.38 11.11 33.33 0 33.33 0/1
chr1 197482167 rs2013617 C G . PASS 0.8026000 0.9841000 1.0000000 0.9990000 1.0000000 0.9455000 37.0 70.0 19 754.01 0.00 100.00 0 100.00 1/1
chr1 197510025 rs3902061 G T . PASS 0.8245000 0.9856000 0.9911000 0.9990000 1.0000000 0.9497000 35.74 70.0 19 729.98 0.00 100.00 0 100.00 1/1
chr1 197515777 rs4316386 A T . PASS 0.7519000 0.7752000 0.8720000 0.7922000 0.8558000 0.8077000 37.0 70.0 22 356.63 9.09 50.00 0 50.00 0/1
chr1 197546093 rs1998711 A T . PASS 0.3116000 0.5620000 0.6498000 0.5825000 0.6166000 0.5284000 35.74 70.0 43 603.57 5.14 44.19 0 44.19 0/1
chr1 197576307 rs11411505 A AT . PASS 0.9251000 0.9914000 1.0000000 0.9950000 1.0000000 0.9780000 36.68 70.0 36 1000.00 2.54 97.22 0 97.22 1/1
chr1 197741951 rs2477067 C A . PASS 1.0000000 0.9928000 1.0000000 0.9950000 0.9959000 0.9972000 37.0 70.0 43 1000.00 0.79 95.35 0 95.35 1/1
chr1 197890422 rs12122995 C G . PASS 0.7829000 0.9741000 1.0000000 0.9632000 0.9908000 0.9299000 36.52 69.2 25 992.61 0.00 100.00 0 100.00 1/1
chr1 197896728 rs12046958 T C . PASS 0.1959000 0.3545000 0.4067000 0.1859000 0.2454000 0.2680000 37.0 70.0 34 700.60 11.18 58.82 0 58.82 0/1
chr1 198095633 rs35168123 C CA . PASS 0.5454000 0.4395000 0.3115000 0.6581000 0.3967000 0.4772000 37.0 70.0 52 797.91 20.63 42.31 0 46.15 0/1
chr1 198167287 rs12240144 T C . PASS 0.2405000 0.1556000 0.2500000 0.1630000 0.1462000 0.1967000 36.08 69.85 22 432.32 10.49 59.09 0 59.09 0/1
chr1 198201907 rs3084926,rs5779913 AT A . PASS . . . . . . 37.0 70.0 11 342.85 0.00 90.91 0 90.91 0/1
chr1 198288709 rs6679100 A G . PASS 0.7640000 0.6599000 0.8988000 0.3777000 0.7382000 0.6941000 37.0 70.0 24 967.01 0.00 100.00 0 100.00 1/1
chr1 198498325 . A AAT . PASS . . . . . . 35.0 70.0 15 180.17 30.00 26.67 0 46.67 0/1
chr1 198679093 rs10753834 G A . PASS 0.6732000 0.4741000 0.3661000 0.3032000 0.3865000 0.4535000 37.0 70.0 12 182.04 0.00 50.00 0 50.00 0/1
chr1 198918502 rs4915331 T C . PASS 0.7216000 0.8228000 0.9325000 0.7823000 0.8487000 0.8151000 36.27 69.03 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 198918524 rs4915332 A G . PASS 0.7663000 0.8228000 0.9325000 0.7833000 0.8487000 0.8271000 36.54 69.62 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 199213309 rs1536093 C T . PASS 0.5794000 0.6542000 0.4375000 0.6203000 0.5920000 0.5719000 37.0 70.0 18 372.83 1.01 61.11 0 61.11 0/1
chr1 199213358 rs1536094 C T . PASS 0.5794000 0.6542000 0.4375000 0.6183000 0.5920000 0.5715000 34.47 70.0 48 568.66 11.84 39.58 0 39.58 0/1
chr1 199357243 rs502360 A G . PASS 0.4433000 0.5620000 0.2986000 0.4046000 0.4029000 0.4149000 35.15 69.85 28 402.25 0.55 46.43 0 46.43 0/1
chr1 199537638 rs34610390 G GAAA . PASS . . . . . . 36.67 70.0 46 1000.00 38.13 28.26 0 95.65 0/1
chr1 199537638 . G GAA . PASS . . . . . . 36.14 70.0 46 1000.00 2.90 45.65 0 95.65 0/1
chr1 199885509 rs4915395 G A . PASS 0.5439000 0.5951000 0.6458000 0.4930000 0.6411000 0.5803000 37.0 70.0 10 62.75 33.33 30.00 0 30.00 0/1
chr1 200014762 rs2817008 A G . PASS 0.7738000 0.2752000 0.0635000 0.3290000 0.2106000 0.3624000 37.0 70.0 24 104.14 13.33 20.83 0 20.83 0/1
chr1 200014766 rs2363454 G T . PASS 0.2610000 0.1066000 0.0238000 0.1501000 0.0798000 0.1342000 37.0 70.0 22 106.02 16.36 22.73 0 22.73 0/1
chr1 200117310 rs2816964 C T . PASS 0.9834000 0.9813000 0.9405000 0.9433000 0.8783000 0.9459000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 200143281 rs1060060 C T . PASS 0.3669000 0.3213000 0.5179000 0.2913000 0.2577000 0.3544000 36.7 70.0 72 1000.00 0.56 55.56 0 55.56 0/1
chr1 200182703 . GG G . PASS . . . . . . 37.0 70.0 10 220.26 0.00 70.00 1 70.00 0/1
chr1 200182703 . GGAGGACGCCGGAGAGGAGGCCGGA GGAGGACGCCGGAGAGGACGCCAGA . PASS . . . . . . 36.5 70.0 11 208.22 0.00 36.36 1 100.00 0/1
chr1 200182703 rs369891064,rs141962771 GGAGGACGCCGGAGAGGAGGCCGGA G . PASS 0.2050000 0.1110000 0.0595000 0.0497000 0.2106000 0.1326000 37.0 70.0 11 208.22 0.00 63.64 1 100.00 0/1
chr1 200182704 . GA G . PASS . . . . . . 37.0 70.0 11 217.25 0.00 63.64 1 63.64 0/1
chr1 200182705 . AG A . PASS . . . . . . 37.0 70.0 11 217.25 0.00 63.64 1 63.64 0/1
chr1 200182706 . GG G . PASS . . . . . . 37.0 70.0 11 217.25 0.00 63.64 1 63.64 0/1
chr1 200182707 . GA G . PASS . . . . . . 37.0 70.0 11 217.25 0.00 63.64 1 63.64 0/1
chr1 200182708 . AC A . PASS . . . . . . 37.0 70.0 11 217.25 0.00 63.64 1 63.64 0/1
chr1 200182709 . CG C . PASS . . . . . . 37.0 70.0 11 217.25 0.00 63.64 1 63.64 0/1
chr1 200182710 . GC G . PASS . . . . . . 37.0 70.0 11 217.25 0.00 63.64 1 63.64 0/1
chr1 200182711 . CC C . PASS . . . . . . 37.0 70.0 11 217.25 0.00 63.64 1 63.64 0/1
chr1 200182712 . CG C . PASS . . . . . . 37.0 70.0 11 217.25 0.00 63.64 1 63.64 0/1
chr1 200182713 . GG G . PASS . . . . . . 37.0 70.0 12 214.24 0.00 58.33 1 58.33 0/1
chr1 200182714 . GA G . PASS . . . . . . 37.0 70.0 12 214.24 0.00 58.33 1 58.33 0/1
chr1 200182715 . AG A . PASS . . . . . . 37.0 70.0 13 211.23 0.00 53.85 1 53.85 0/1
chr1 200182716 . GA G . PASS . . . . . . 37.0 70.0 13 211.23 0.00 53.85 1 53.85 0/1
chr1 200182717 . AG A . PASS . . . . . . 37.0 70.0 13 211.23 0.00 53.85 1 53.85 0/1
chr1 200182718 . GG G . PASS . . . . . . 37.0 70.0 13 211.23 0.00 53.85 1 53.85 0/1
chr1 200182719 . GA G . PASS . . . . . . 37.0 70.0 14 208.22 0.00 50.00 1 50.00 0/1
chr1 200182720 . AG A . PASS . . . . . . 37.0 70.0 14 463.98 0.00 50.00 1 100.00 0/1
chr1 200182721 rs61826220 G C . PASS 0.6278000 0.5778000 0.6687000 0.3459000 0.5348000 0.5543000 37.0 70.0 14 463.98 0.00 50.00 1 100.00 0/1
chr1 200182721 . GG G . PASS . . . . . . 37.0 70.0 14 208.22 0.00 50.00 1 50.00 0/1
chr1 200182722 . GC G . PASS . . . . . . 37.0 70.0 14 208.22 0.00 50.00 1 50.00 0/1
chr1 200182723 . CC C . PASS . . . . . . 37.0 70.0 14 208.22 0.00 50.00 1 50.00 0/1
chr1 200182724 . CG C . PASS . . . . . . 37.0 70.0 14 468.13 0.00 50.00 1 100.00 0/1
chr1 200182725 rs76632737 G A . PASS 0.5514000 0.4164000 0.4444000 0.2853000 0.4990000 0.4475000 37.0 70.0 14 468.13 0.00 50.00 1 100.00 0/1
chr1 200182725 . GG G . PASS . . . . . . 37.0 70.0 14 208.22 0.00 50.00 1 50.00 0/1
chr1 200182726 . GA G . PASS . . . . . . 37.0 70.0 14 208.22 0.00 50.00 1 50.00 0/1
chr1 200182731 . GAC GGT . PASS . . . . . . 37.0 70.0 14 217.78 0.00 50.00 0 50.00 0/1
chr1 200182834 rs12028402 A G . PASS 0.7549000 0.5850000 0.8462000 0.3459000 0.6022000 0.6378000 36.68 69.54 76 1000.00 0.00 100.00 0 100.00 1/1
chr1 200183398 rs10919847 C A . PASS 0.8525000 0.5965000 0.8452000 0.3439000 0.5992000 0.6639000 36.53 69.16 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 200183460 rs10919848 C T . PASS 0.5658000 0.5447000 0.6667000 0.3121000 0.5266000 0.5246000 36.61 67.42 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 200202231 rs10753873 A T . PASS 0.4410000 0.5735000 0.5188000 0.5875000 0.6636000 0.5479000 36.4 69.67 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 200376695 rs35342093 C T . PASS 0.0038000 0.0288000 0.0000000 0.0447000 0.0112000 0.0161740 35.84 69.85 135 1000.00 0.00 100.00 0 100.00 1/1
chr1 200522566 rs12120084 G C . PASS 0.0424000 0.2017000 0.2302000 0.3917000 0.2843000 0.2196000 36.35 70.0 66 1000.00 0.98 56.06 0 56.06 0/1
chr1 200534248 rs7543730 C T . PASS 0.4077000 0.5461000 0.6895000 0.5765000 0.6431000 0.5635000 36.38 70.0 92 1000.00 6.30 42.39 0 42.39 0/1
chr1 200544650 rs35571944 TAC T . PASS . . . . . . 35.44 70.0 33 427.44 10.23 48.48 0 48.48 0/1
chr1 200558363 rs6665951 T C . PASS 0.9032000 0.6700000 0.6875000 0.7475000 0.7515000 0.7666000 35.4 70.0 52 1000.00 12.31 57.69 0 57.69 0/1
chr1 200563706 rs4623737 C A . PASS 0.5182000 0.5432000 0.6885000 0.5755000 0.6462000 0.5571000 37.0 70.0 49 943.69 2.42 55.10 0 55.10 0/1
chr1 200567596 rs2809358 T G . PASS 0.3442000 0.3213000 0.1825000 0.3519000 0.2342000 0.2885000 37.0 70.0 24 225.31 41.67 33.33 0 33.33 0/1
chr1 200574959 rs2808238 T C . PASS 0.3464000 0.3199000 0.1825000 0.3519000 0.2342000 0.2889000 37.0 70.0 25 435.30 4.31 52.00 0 52.00 0/1
chr1 200575744 rs10577607,rs59704195 CTAAA C . PASS 0.3442000 0.3199000 0.1825000 0.3519000 0.2342000 0.2883000 35.29 70.0 11 205.24 0.00 63.64 0 63.64 0/1
chr1 200575794 rs2794410 A G . PASS 0.3442000 0.3199000 0.1825000 0.3519000 0.2342000 0.2883000 37.0 70.0 21 447.33 8.79 61.90 0 61.90 0/1
chr1 200578093 rs2794409 G A . PASS 0.9130000 0.8948000 0.8710000 0.9662000 0.9100000 0.9121000 36.45 70.0 22 871.45 0.00 100.00 0 100.00 1/1
chr1 200583380 rs2808241 T G . PASS 0.4924000 0.3285000 0.1825000 0.3529000 0.2342000 0.3289000 37.0 70.0 39 263.70 12.31 25.64 0 25.64 0/1
chr1 200617533 rs17416794 G T . PASS 0.0061000 0.0735000 0.0000000 0.1431000 0.0225000 0.0449000 36.14 70.0 35 430.81 34.29 40.00 0 40.00 0/1
chr1 200618238 rs6665604 T C . PASS 0.9092000 0.9654000 1.0000000 0.9543000 0.9765000 0.9575000 36.44 70.0 86 1000.00 0.00 100.00 0 100.00 1/1
chr1 200619478 rs2808230 C A . PASS 0.9448000 0.9971000 1.0000000 1.0000000 1.0000000 0.9850000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 200619530 rs2809365 T C . PASS 0.9092000 0.9971000 1.0000000 1.0000000 1.0000000 0.9756000 37.0 70.0 22 883.47 0.00 100.00 0 100.00 1/1
chr1 200816519 . TT T . PASS . . . . . . 37.0 70.0 10 53.18 20.00 30.00 1 30.00 0/1
chr1 200816519 rs374164964,rs71138304,rs72312755 TTG T . PASS . . . . . . 37.0 70.0 11 53.18 36.36 27.27 1 100.00 0/1
chr1 200816520 . TG T . PASS 0.1573000 0.1311000 0.1915000 0.1262000 0.1104000 0.1452000 37.0 70.0 10 308.94 20.00 40.00 1 100.00 0/1
chr1 200816521 rs2172666 G T . PASS 0.6853000 0.7767000 0.7431000 0.7724000 0.6943000 0.7288000 37.0 70.0 10 308.94 13.33 60.00 1 100.00 0/1
chr1 200824108 rs2275193 C T . PASS 0.2103000 0.1354000 0.1815000 0.1262000 0.1115000 0.1579000 37.0 70.0 27 345.73 6.06 40.74 0 40.74 0/1
chr1 200826395 rs2292095 A T . PASS 0.1967000 0.1311000 0.1815000 0.1262000 0.1115000 0.1538000 37.0 70.0 15 335.93 20.00 66.67 0 66.67 0/1
chr1 200833217 rs7526103 T C . PASS 0.1967000 0.1311000 0.1835000 0.1262000 0.1115000 0.1542000 36.43 69.9 34 730.36 5.60 61.76 0 61.76 0/1
chr1 200842341 rs138176594 T C . PASS 0.0015000 0.0014000 0.0000000 0.0129000 0.0020000 0.0035942 36.5 70.0 51 804.50 25.00 47.06 0 47.06 0/1
chr1 200843305 rs3738250 G T . PASS 0.0832000 0.2392000 0.1766000 0.3320000 0.1851000 0.1935000 36.37 70.0 68 1000.00 9.44 55.88 0 55.88 0/1
chr1 200867492 rs2271018 C G . PASS 0.1150000 0.3112000 0.1577000 0.2495000 0.2198000 0.1983000 36.65 70.0 61 1000.00 12.05 55.74 0 55.74 0/1
chr1 200868493 rs72225687,rs71138306 GTGTGTGTGCA G . PASS . . . . . . 35.5 70.0 10 82.93 20.00 40.00 0 40.00 0/1
chr1 200877786 rs2279837 T C . PASS 0.0741000 0.4193000 0.1458000 0.3489000 0.2495000 0.2258000 37.0 70.0 13 53.71 15.38 23.08 0 23.08 0/1
chr1 200877850 rs41299637 T G . PASS 0.1362000 0.1585000 0.0020000 0.2734000 0.1207000 0.1368000 37.0 70.0 39 890.25 12.92 64.10 0 64.10 0/1
chr1 200880978 rs296520 C T . PASS 0.6089000 0.8213000 0.9970000 0.7256000 0.8753000 0.7919000 36.57 63.25 80 884.29 6.79 35.00 0 35.00 0/1
chr1 200881172 rs296521 C A . PASS 0.0923000 0.5432000 0.2688000 0.5298000 0.3364000 0.3259000 36.38 65.92 89 1000.00 9.80 43.82 0 43.82 0/1
chr1 200943793 rs71991687,rs201905676 CAGGA C . PASS 0.9955000 1.0000000 1.0000000 1.0000000 1.0000000 0.9988000 34.98 70.0 96 1000.00 0.00 100.00 0 100.00 1/1
chr1 200944840 rs296563 T G . PASS 0.7746000 0.7954000 0.7877000 0.6899000 0.8190000 0.7718000 36.44 70.0 124 1000.00 2.32 51.61 0 51.61 0/1
chr1 200957697 rs12142704 A G . PASS 0.1566000 0.1571000 0.0020000 0.2813000 0.0859000 0.1368000 37.0 70.0 15 256.55 28.33 53.33 0 53.33 0/1
chr1 200960307 rs2297909 G A . PASS 0.2330000 0.2046000 0.2073000 0.3101000 0.1769000 0.2284000 36.45 69.55 57 1000.00 3.59 77.19 0 77.19 0/1
chr1 200967490 rs10920089 A G . PASS 0.8722000 0.4669000 0.6270000 0.4692000 0.3896000 0.5915000 36.2 70.0 69 988.94 11.59 43.48 0 43.48 0/1
chr1 200978379 rs35918012 G C . PASS 0.0015000 0.0231000 0.0000000 0.0288000 0.0092000 0.0111820 37.0 69.05 57 668.99 11.53 36.84 0 36.84 0/1
chr1 201009556 rs1546416 A G . PASS 0.4160000 0.2882000 0.3026000 0.3648000 0.2485000 0.3325000 37.0 70.0 25 435.29 11.08 52.00 0 52.00 0/1
chr1 201009897 rs6427875 T C . PASS 1.0000000 0.9942000 1.0000000 0.9940000 0.9949000 0.9970000 36.33 70.0 18 704.37 0.00 100.00 0 100.00 1/1
chr1 201020105 rs6702590 A G . PASS 0.9735000 0.8213000 0.9931000 0.6700000 0.8967000 0.8804000 36.68 70.0 80 1000.00 1.71 47.50 0 47.50 0/1
chr1 201031307 rs2297903 A C . PASS 0.4917000 0.6643000 0.7609000 0.4960000 0.7055000 0.6124000 36.45 70.0 29 783.03 1.25 75.86 0 75.86 0/1
chr1 201038687 rs7415038 A G . PASS 0.5182000 0.3012000 0.0010000 0.4215000 0.1575000 0.2941000 36.7 70.0 165 1000.00 4.13 49.09 0 49.09 0/1
chr1 201044748 rs1998721 A G . PASS 0.4955000 0.7536000 0.9643000 0.7604000 0.9090000 0.7596000 36.7 69.5 98 1000.00 1.33 40.82 0 40.82 0/1
chr1 201047062 rs4915476 G A . PASS 0.2920000 0.2695000 0.0367000 0.2425000 0.1043000 0.1909000 35.97 70.0 89 1000.00 0.51 39.33 0 39.33 0/1
chr1 201047075 rs4915477 A G . PASS 0.9433000 0.6484000 0.2302000 0.6571000 0.2761000 0.5711000 36.85 70.0 82 1000.00 0.00 100.00 0 100.00 1/1
chr1 201047111 rs9427714 A G . PASS 0.0280000 0.2032000 0.0010000 0.3400000 0.1176000 0.1270000 36.78 70.0 94 1000.00 2.71 58.51 0 58.51 0/1
chr1 201052199 rs3767511 T C . PASS 0.2950000 0.2320000 0.0327000 0.2425000 0.1104000 0.1869000 37.0 70.0 20 283.26 7.78 45.00 0 45.00 0/1
chr1 201052310 rs12742169 A T . PASS 0.0257000 0.2032000 0.0010000 0.3400000 0.1217000 0.1272000 36.41 70.0 107 1000.00 5.65 38.32 0 38.32 0/1
chr1 201052312 rs12742170 A C . PASS 0.0257000 0.2032000 0.0010000 0.3400000 0.1217000 0.1272000 36.71 70.0 110 1000.00 0.69 38.18 0 38.18 0/1
chr1 201052474 rs12724643 T C . PASS 0.0257000 0.2032000 0.0010000 0.3400000 0.1217000 0.1272000 37.0 70.0 34 658.83 13.62 55.88 0 55.88 0/1
chr1 201054197 rs41267505 G T . PASS 0.1460000 0.2334000 0.0317000 0.1799000 0.0777000 0.1286000 36.62 70.0 48 1000.00 6.25 66.67 0 66.67 0/1
chr1 201058692 rs2296384 T C . PASS 0.5938000 0.5216000 0.4087000 0.6024000 0.4581000 0.5218000 37.0 70.0 10 188.05 0.00 60.00 0 60.00 0/1
chr1 201060865 rs2296383 G A . PASS 0.0522000 0.3963000 0.3929000 0.4105000 0.3834000 0.3051000 35.86 70.0 101 1000.00 9.34 41.58 0 41.58 0/1
chr1 201112981 rs8158 A G . PASS 0.6362000 0.7133000 0.6260000 0.7644000 0.7515000 0.6931000 36.61 70.0 68 1000.00 9.68 45.59 0 45.59 0/1
chr1 201113118 rs3738266 A G . PASS 0.9433000 0.9625000 0.8740000 0.9543000 0.9663000 0.9387000 37.0 70.0 22 883.47 0.00 100.00 0 100.00 1/1
chr1 201116018 rs3752979 C G . PASS 0.9433000 0.9625000 0.8740000 0.9543000 0.9663000 0.9387000 36.4 70.0 20 783.76 0.00 100.00 0 100.00 1/1
chr1 201122784 rs6684980 C T . PASS 0.6172000 0.7133000 0.6210000 0.7644000 0.7454000 0.6859000 34.0 70.0 26 199.41 3.85 30.77 0 30.77 0/1
chr1 201122816 rs16847895 T C . PASS 0.0446000 0.2233000 0.1349000 0.1700000 0.1115000 0.1258000 35.62 70.0 46 879.08 5.69 56.52 0 56.52 0/1
chr1 201122947 rs1925361 T G . PASS 0.9455000 0.9625000 0.8750000 0.9543000 0.9663000 0.9395000 36.35 70.0 130 1000.00 0.00 100.00 0 100.00 1/1
chr1 201166281 rs7533096 C T . PASS 0.6172000 0.3213000 0.5347000 0.4145000 0.5368000 0.5032000 36.45 70.0 22 871.45 0.00 100.00 0 100.00 1/1
chr1 201166383 rs4915221 G A . PASS 0.8101000 0.5735000 0.8562000 0.5547000 0.7965000 0.7326000 36.48 69.78 93 1000.00 0.00 100.00 0 100.00 1/1
chr1 201166435 rs11589317 T C . PASS 0.8623000 0.7939000 0.8552000 0.9364000 0.8691000 0.8676000 36.53 69.47 76 1000.00 0.00 100.00 0 100.00 1/1
chr1 201170772 rs10157730 A G . PASS 0.8858000 0.8487000 1.0000000 0.9463000 0.9560000 0.9295000 37.0 68.95 19 758.16 0.00 100.00 0 100.00 1/1
chr1 201170824 rs10158976 C G . PASS 0.8865000 0.8487000 1.0000000 0.9463000 0.9560000 0.9297000 35.8 69.2 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 201171007 rs10800762 T G . PASS 0.5121000 0.5850000 0.9435000 0.7684000 0.7219000 0.7015000 36.75 69.58 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 201173104 rs832160 C T . PASS 0.3298000 0.5937000 0.6587000 0.6233000 0.5399000 0.5325000 37.0 70.0 44 461.65 19.09 34.09 0 34.09 0/1
chr1 201175227 rs832156 C A . PASS 0.8775000 0.7450000 0.6687000 0.7217000 0.7607000 0.7630000 37.0 69.31 45 1000.00 10.57 64.44 0 64.44 0/1
chr1 201175274 rs9651057 A G . PASS 0.1467000 0.4063000 0.5903000 0.4821000 0.3333000 0.3758000 36.69 70.0 86 1000.00 10.02 45.35 0 45.35 0/1
chr1 201175715 rs1341631 G T . PASS 0.8775000 0.7450000 0.6736000 0.7217000 0.7607000 0.7640000 36.14 70.0 51 955.43 11.62 54.90 0 54.90 0/1
chr1 201176018 rs10753895 A G . PASS 0.8775000 0.7464000 0.6716000 0.7217000 0.7607000 0.7638000 36.69 70.0 79 1000.00 6.43 49.37 0 49.37 0/1
chr1 201176108 rs12094334 G A . PASS 0.1997000 0.3156000 0.3095000 0.3489000 0.4131000 0.3095000 36.57 70.0 54 962.55 10.58 51.85 0 51.85 0/1
chr1 201176968 rs12063867 A G . PASS 0.1762000 0.3156000 0.3095000 0.3509000 0.4131000 0.3037000 36.11 70.0 87 809.48 3.58 31.03 0 31.03 0/1
chr1 201177246 rs72751165 T C . PASS 0.2065000 0.3184000 0.3095000 0.3499000 0.4121000 0.3117000 36.29 70.0 72 1000.00 5.23 47.22 0 47.22 0/1
chr1 201177278 rs7551098 C T . PASS 0.2065000 0.3156000 0.3105000 0.3499000 0.4121000 0.3115000 36.48 70.0 47 774.78 5.92 48.94 0 48.94 0/1
chr1 201177538 rs7551538 G T . PASS 0.1778000 0.3156000 0.3105000 0.3499000 0.4131000 0.3041000 36.69 70.0 77 1000.00 1.27 50.65 0 50.65 0/1
chr1 201178470 rs12757706 G A . PASS 0.1755000 0.3141000 0.3095000 0.3499000 0.4182000 0.3041000 36.6 70.0 69 1000.00 24.06 43.48 0 43.48 0/1
chr1 201178667 rs199718718 C G . PASS . . . . . . 35.8 60.0 106 50.05 47.55 9.43 0 9.43 0/1
chr1 201178788 rs66922684 A G . PASS . . . . . . 35.93 65.13 111 1000.00 4.50 59.46 0 60.36 0/1
chr1 201178819 rs72468019 G A . PASS . . . . . . 36.0 69.92 107 585.20 29.50 21.50 0 22.43 0/1
chr1 201178866 rs111738288 A G . PASS 0.1793000 0.2493000 0.2431000 0.2535000 0.3139000 0.2430000 34.94 62.51 108 877.33 5.97 28.70 0 32.41 0/1
chr1 201178904 rs201227267 A G . PASS . . . . . . 35.96 55.11 119 1000.00 13.03 37.82 0 38.66 0/1
chr1 201178924 rs6678538 A G . PASS 0.4440000 0.4222000 0.4544000 0.4225000 0.4601000 0.4419000 35.67 57.2 107 1000.00 10.18 50.47 0 50.47 0/1
chr1 201178926 rs6702960 G A . PASS 0.4440000 0.4222000 0.4554000 0.4225000 0.4611000 0.4423000 36.14 57.18 103 1000.00 14.94 54.37 0 54.37 0/1
chr1 201178965 rs12758143 A G . PASS . . . . . . 36.61 59.58 136 1000.00 6.74 45.59 0 45.59 0/1
chr1 201178984 rs12758581 G A . PASS . . . . . . 34.88 62.65 150 163.38 48.67 10.67 0 11.33 0/1
chr1 201179050 rs1722732 A G . PASS . . . . . . 35.84 64.65 125 850.15 16.93 24.80 0 24.80 0/1
chr1 201179068 rs199816935 G A . PASS . . . . . . 37.0 68.78 146 655.88 7.00 18.49 0 18.49 0/1
chr1 201179082 rs1772843 G A . PASS . . . . . . 35.11 69.0 147 282.70 25.64 12.93 0 12.93 0/1
chr1 201179599 rs12021954 G C . PASS 0.0741000 0.1527000 0.2004000 0.1769000 0.1155000 0.1392000 35.8 64.2 13 329.94 36.92 76.92 0 76.92 0/1
chr1 201180083 . GGG GGA . PASS . . . . . . 36.45 69.82 91 230.62 38.46 15.38 0 60.44 0/1
chr1 201180083 . GGG GTG . PASS . . . . . . 36.45 69.82 91 230.62 2.57 45.05 0 60.44 0/1
chr1 201180091 . GAA GGG . PASS . . . . . . 36.57 69.57 87 245.71 36.62 16.09 0 16.09 0/1
chr1 201180100 rs4915223 C G . PASS 0.1952000 0.1988000 0.2778000 0.2386000 0.1646000 0.2151000 36.14 69.57 75 310.42 52.19 18.67 0 18.67 0/1
chr1 201180140 rs58792551 C T . PASS . . . . . . 37.0 69.82 62 240.41 9.09 17.74 0 17.74 0/1
chr1 201180145 rs12022767 G A . PASS 0.4418000 0.4020000 0.3601000 0.3976000 0.4734000 0.4171000 36.25 69.88 65 428.22 45.38 24.62 0 24.62 0/1
chr1 201180148 rs145517342 A G . PASS 0.4433000 0.4035000 0.3661000 0.3996000 0.4734000 0.4193000 37.0 69.85 59 332.95 70.93 22.03 0 22.03 0/1
chr1 201180153 rs12029808 A G . PASS . . . . . . 37.0 69.82 64 234.38 63.64 17.19 0 17.19 0/1
chr1 201180162 rs12029809 A C . PASS 0.3313000 0.3012000 0.2173000 0.2604000 0.4223000 0.3077000 37.0 69.75 68 92.87 58.82 11.76 0 11.76 0/1
chr1 201180501 rs71635536 T C . PASS . . . . . . 36.29 68.59 118 1000.00 16.58 43.22 0 43.22 0/1
chr1 201181217 rs12070918 A G . PASS 0.2504000 0.3170000 0.3105000 0.3499000 0.4192000 0.3247000 36.61 70.0 67 1000.00 4.24 46.27 0 46.27 0/1
chr1 201181223 rs12070919 A G . PASS 0.9947000 0.9971000 1.0000000 0.9990000 1.0000000 0.9980000 36.29 70.0 68 1000.00 0.00 100.00 0 100.00 1/1
chr1 201181920 rs12060924 G T . PASS 0.1853000 0.3141000 0.3105000 0.3499000 0.4182000 0.3069000 36.31 70.0 73 1000.00 2.19 47.95 0 47.95 0/1
chr1 201182779 rs2282413 A G . PASS 0.1853000 0.3141000 0.3095000 0.3499000 0.4192000 0.3069000 37.0 70.0 35 739.36 17.14 60.00 0 60.00 0/1
chr1 201183363 rs2282415 C T . PASS 0.2542000 0.3184000 0.3095000 0.3479000 0.4182000 0.3251000 36.08 70.0 83 1000.00 1.98 46.99 0 46.99 0/1
chr1 201183402 rs1568810 T C . PASS 0.1891000 0.3256000 0.3403000 0.3509000 0.4182000 0.3157000 36.65 70.0 64 1000.00 3.49 53.12 0 53.12 0/1
chr1 201184097 rs4915496 G A . PASS 0.1142000 0.2363000 0.2986000 0.2744000 0.2403000 0.2250000 37.0 70.0 51 649.43 16.67 39.22 0 39.22 0/1
chr1 201184275 rs2275673 C T . PASS 0.2383000 0.3314000 0.3452000 0.3509000 0.4151000 0.3299000 36.43 70.0 162 1000.00 1.59 51.85 0 51.85 0/1
chr1 201187764 rs10920144 T C . PASS 0.9592000 0.8501000 0.9980000 0.8946000 0.9121000 0.9297000 36.3 70.0 69 1000.00 0.00 100.00 0 100.00 1/1
chr1 201187828 rs3738268 T C . PASS 0.9592000 0.8501000 0.9970000 0.8946000 0.9121000 0.9295000 36.56 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 201190732 rs3738269 G A . PASS 0.1135000 0.2464000 0.2550000 0.2694000 0.2618000 0.2206000 36.69 70.0 72 1000.00 4.91 54.17 0 54.17 0/1
chr1 201195296 rs3738271 G A . PASS 0.2625000 0.1599000 0.1349000 0.1203000 0.2362000 0.1889000 36.43 70.0 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 201252866 rs2268147 C T . PASS 0.3828000 0.1052000 0.0873000 0.0716000 0.1677000 0.1803000 36.57 70.0 58 950.51 2.96 48.28 0 48.28 0/1
chr1 201282573 rs35507614 A G . PASS 0.2814000 0.0677000 0.0000000 0.0616000 0.0399000 0.1038000 36.68 70.0 84 1000.00 2.38 45.24 0 45.24 0/1
chr1 201285591 rs72753125 G A . PASS 0.0000000 0.0014000 0.0000000 0.0060000 0.0000000 0.0013978 37.0 70.0 16 128.22 10.00 31.25 0 31.25 0/1
chr1 201285759 rs1779297 A G . PASS 0.8926000 0.9885000 1.0000000 1.0000000 0.9969000 0.9694000 36.41 69.75 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 201285909 rs1534051 A G . PASS 0.8003000 0.7968000 0.7698000 0.8012000 0.8906000 0.8115000 36.49 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 201286614 rs11336457 GA G . PASS 0.4917000 0.9049000 0.9901000 0.8996000 0.8057000 0.7925000 37.0 70.0 16 623.28 0.00 100.00 0 100.00 1/1
chr1 201286628 rs1772823 C G . PASS 0.4932000 0.9049000 0.9901000 0.8996000 0.8088000 0.7935000 36.0 70.0 24 938.83 0.00 100.00 0 100.00 1/1
chr1 201288007 rs1794868 G A . PASS 0.4932000 0.9063000 0.9901000 0.8996000 0.8088000 0.7937000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 201288898 rs1722759 A C . PASS 0.9622000 0.9957000 1.0000000 1.0000000 1.0000000 0.9894000 36.48 69.13 23 909.07 0.00 100.00 0 100.00 1/1
chr1 201291066 rs2071960 C T . PASS 0.3759000 0.7118000 0.7599000 0.7008000 0.7014000 0.6286000 36.79 69.64 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 201292110 rs1779288 T C . PASS 0.9622000 0.9957000 1.0000000 1.0000000 1.0000000 0.9894000 37.0 70.0 24 967.01 0.00 100.00 0 100.00 1/1
chr1 201292488 rs2239845 C T . PASS 0.3767000 0.7133000 0.7589000 0.7008000 0.7014000 0.6288000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 201293512 rs36076398 TG T . PASS 0.1293000 0.6455000 0.7361000 0.6392000 0.6585000 0.5288000 36.0 68.46 25 412.72 9.23 52.00 0 52.00 0/1
chr1 201294278 rs41269943 G A . PASS 0.2617000 0.0692000 0.0218000 0.0616000 0.0440000 0.1040000 37.0 70.0 78 1000.00 4.86 48.72 0 48.72 0/1
chr1 201331068 rs45520032 A G . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 36.69 70.0 80 1000.00 2.82 48.75 0 48.75 0/1
chr1 201331554 rs1104859 T G . PASS 0.7995000 0.7983000 0.5268000 0.7445000 0.8446000 0.7422000 37.0 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 201334382 rs3729547 G A . PASS 0.6293000 0.7997000 0.5268000 0.7416000 0.8354000 0.6951000 36.38 69.83 117 1000.00 0.00 100.00 0 100.00 1/1
chr1 201334795 rs3729845 C T . PASS 0.1921000 0.0562000 0.0010000 0.0666000 0.0532000 0.0825000 36.61 70.0 75 1000.00 1.46 41.33 0 41.33 0/1
chr1 201335899 rs1573230 C T . PASS 0.9312000 0.9971000 1.0000000 1.0000000 1.0000000 0.9814000 37.0 70.0 18 716.39 0.00 100.00 0 100.00 1/1
chr1 201336984 rs3729843 C T . PASS 0.0212000 0.4755000 0.1815000 0.4722000 0.4233000 0.2855000 37.0 70.0 30 712.64 10.00 66.67 0 66.67 0/1
chr1 201338896 rs10920184 T C . PASS 0.3132000 0.7176000 0.4653000 0.6511000 0.6319000 0.5300000 36.75 70.0 96 1000.00 0.00 100.00 0 100.00 1/1
chr1 201339043 rs12049476 C T . PASS 0.3124000 0.7190000 0.4871000 0.6581000 0.6339000 0.5361000 36.0 70.0 12 453.75 0.00 100.00 0 100.00 1/1
chr1 201341175 rs45533739,rs4019985 CAGAAG C . PASS 0.2791000 0.7133000 0.4663000 0.6491000 0.6329000 0.5204000 36.76 70.0 98 1000.00 0.00 100.00 0 100.00 1/1
chr1 201341341 rs868407 C T . PASS 0.7421000 0.8127000 0.7391000 0.7465000 0.8425000 0.7718000 34.6 70.0 15 555.04 0.00 100.00 0 100.00 1/1
chr1 201353827 rs10920189 G C . PASS 0.2526000 0.6599000 0.4802000 0.6034000 0.6493000 0.5028000 37.0 70.0 22 356.63 0.00 50.00 0 50.00 0/1
chr1 201355522 rs4128458 T C . PASS 0.8775000 0.3847000 0.5188000 0.4612000 0.3640000 0.5531000 37.0 70.0 82 1000.00 0.57 41.46 0 41.46 0/1
chr1 201355669 rs68021059 T C . PASS 0.1377000 0.0778000 0.0000000 0.0885000 0.0409000 0.0729000 37.0 70.0 64 860.93 1.68 40.62 0 40.62 0/1
chr1 201355943 rs2799677 C T . PASS 0.7474000 0.3775000 0.5179000 0.4622000 0.3630000 0.5176000 35.08 70.0 40 843.36 1.00 62.50 0 62.50 0/1
chr1 201383616 rs2026593 A G . PASS 0.7277000 0.8530000 0.7222000 0.8608000 0.7638000 0.7778000 36.62 70.0 51 1000.00 13.60 62.75 0 62.75 0/1
chr1 201383643 rs2026594 A C . PASS 0.7277000 0.8530000 0.7222000 0.8618000 0.7648000 0.7782000 36.71 70.0 88 1000.00 7.90 47.73 0 47.73 0/1
chr1 201489286 rs4310467 C G . PASS 0.0340000 0.1916000 0.0873000 0.3459000 0.1391000 0.1498000 36.46 69.24 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 201687406 rs11588142 G A . PASS 0.0287000 0.2939000 0.1349000 0.3241000 0.0920000 0.1585000 37.0 70.0 13 179.03 0.00 46.15 0 46.15 0/1
chr1 201687451 rs11576721 A G . PASS 0.5174000 0.7133000 0.5952000 0.5527000 0.5419000 0.5721000 36.37 70.0 37 637.79 8.82 51.35 0 51.35 0/1
chr1 201749520 rs529581 G C . PASS 0.1505000 0.4280000 0.3075000 0.3976000 0.2536000 0.2903000 37.0 68.67 43 460.51 21.09 34.88 0 34.88 0/1
chr1 201763499 rs567185 C T . PASS 0.1120000 0.6311000 0.6627000 0.6213000 0.6544000 0.5030000 37.0 70.0 10 104.51 10.00 40.00 0 40.00 0/1
chr1 201772863 rs34105833 T TG . PASS 0.9297000 0.9928000 1.0000000 1.0000000 1.0000000 0.9804000 36.29 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 201827919 rs72742073 C G . PASS 0.0250000 0.1686000 0.0724000 0.1074000 0.1247000 0.0905000 37.0 70.0 12 219.65 19.05 58.33 0 58.33 0/1
chr1 201837934 rs34353605,rs55642143 CGT C . PASS . . . . . . 35.4 70.0 269 1000.00 2.47 44.24 0 44.24 0/1
chr1 201840059 rs2067311,rs150361248,rs112851536 GTTATT G . PASS 0.7761000 0.9669000 0.7292000 0.9811000 0.9294000 0.8642000 36.57 70.0 14 491.97 0.00 100.00 0 100.00 1/1
chr1 201840464 rs2644124 T C . PASS 0.9720000 0.9986000 1.0000000 1.0000000 1.0000000 0.9924000 37.0 69.31 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 201844128 rs2678203 G A . PASS 0.8918000 0.9957000 1.0000000 1.0000000 1.0000000 0.9708000 35.2 69.5 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 201858887 rs7539696 C T . PASS 0.2451000 0.1628000 0.1369000 0.2048000 0.2791000 0.2105000 37.0 70.0 11 101.50 0.00 36.36 0 36.36 0/1
chr1 201860626 rs2250377 A G . PASS 0.8041000 0.7767000 0.8978000 0.6988000 0.7342000 0.7843000 36.61 70.0 122 1000.00 0.00 100.00 0 100.00 1/1
chr1 201868333 rs3738290 C T . PASS 0.2443000 0.1628000 0.0833000 0.1998000 0.2751000 0.1977000 36.4 70.0 46 652.47 2.61 43.48 0 43.48 0/1
chr1 201907874 rs2820299 A G . PASS 0.8714000 0.8271000 0.8304000 0.8946000 0.8681000 0.8610000 37.0 70.0 18 163.98 33.33 33.33 0 33.33 0/1
chr1 201908167 rs2819367 T G . PASS 0.5537000 0.6484000 0.7034000 0.6948000 0.6227000 0.6388000 37.0 70.0 15 127.09 0.00 33.33 0 33.33 0/1
chr1 201924749 rs3820438 G C . PASS 0.1324000 0.3991000 0.4365000 0.2256000 0.3180000 0.2855000 37.0 68.95 46 618.56 2.29 41.30 0 41.30 0/1
chr1 201926403 rs61821487 T G . PASS 0.0340000 0.0793000 0.0377000 0.0855000 0.0838000 0.0611000 37.0 70.0 19 449.22 7.29 68.42 0 68.42 0/1
chr1 201934578 rs4648 G A . PASS 0.0348000 0.0793000 0.0377000 0.0855000 0.0849000 0.0615000 36.04 70.0 58 813.20 6.34 43.10 0 43.10 0/1
chr1 201947772 rs10800803 G A . PASS 0.2927000 0.2536000 0.3115000 0.3032000 0.1687000 0.2690000 35.29 69.86 47 386.83 5.17 29.79 0 29.79 0/1
chr1 201952294 rs73074403 C G . PASS 0.4115000 0.4510000 0.5159000 0.6064000 0.5961000 0.5132000 37.0 70.0 21 526.72 7.62 71.43 0 71.43 0/1
chr1 201952310 rs112370844 T G . PASS 0.4115000 0.4510000 0.5169000 0.6064000 0.5961000 0.5134000 37.0 70.0 12 261.42 0.00 66.67 0 66.67 0/1
chr1 201952574 rs4950806 T C . PASS 0.5953000 0.4654000 0.5159000 0.6083000 0.5961000 0.5641000 37.0 70.0 32 456.01 16.07 43.75 0 43.75 0/1
chr1 201952755 rs4950807 T A . PASS 0.4115000 0.4496000 0.5159000 0.6054000 0.5961000 0.5128000 37.0 70.0 12 177.88 16.67 50.00 0 50.00 0/1
chr1 201969082 rs1130790 G A . PASS 0.1558000 0.4380000 0.3978000 0.4284000 0.2076000 0.3085000 36.32 70.0 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 201970562 rs4332408 T C . PASS 0.9228000 0.9942000 1.0000000 0.9990000 1.0000000 0.9786000 36.41 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 201970748 rs4131469 G A . PASS 0.1619000 0.4380000 0.3978000 0.4294000 0.2076000 0.3103000 36.68 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 201981218 rs11543979 C G . PASS 0.5424000 0.2363000 0.3363000 0.2396000 0.2382000 0.3383000 37.0 70.0 55 633.25 11.82 36.36 0 36.36 0/1
chr1 201981353 . CTG CCC . PASS . . . . . . 35.8 70.0 28 278.81 12.86 35.71 0 35.71 0/1
chr1 201981862 rs2819362 T C . PASS 0.8464000 0.6009000 0.7758000 0.5467000 0.6738000 0.7043000 36.2 70.0 82 1000.00 6.98 53.66 0 54.88 0/1
chr1 201983242 rs2819365 C T . PASS 0.0113000 0.3184000 0.1290000 0.3151000 0.2342000 0.1821000 37.0 70.0 21 405.56 4.76 57.14 0 57.14 0/1
chr1 202092046 rs3795593 C T . PASS 0.3873000 0.5634000 0.4901000 0.8449000 0.7730000 0.5996000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 202092360 rs3795595 G A . PASS 0.7769000 0.8300000 0.8353000 0.9066000 0.9223000 0.8504000 36.59 69.55 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 202092415 rs3795596 A G . PASS 0.7814000 0.8285000 0.8363000 0.9066000 0.9223000 0.8516000 37.0 69.3 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 202092580 rs7516762 T C . PASS 0.7088000 0.8228000 0.8353000 0.9066000 0.9223000 0.8315000 36.35 69.64 55 1000.00 0.00 100.00 0 100.00 1/1
chr1 202096815 rs3820380 G A . PASS 0.1770000 0.5360000 0.4792000 0.7773000 0.7403000 0.5182000 37.0 69.26 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 202107422 rs72390540,rs140055888,rs60365890 AACACAC A . PASS . . . . . . 33.59 70.0 40 678.46 1.82 55.00 0 55.00 0/1
chr1 202121643 rs10920337 G A . PASS 0.7247000 0.3602000 0.3700000 0.2565000 0.3661000 0.4387000 35.25 70.0 107 1000.00 1.29 51.40 0 51.40 0/1
chr1 202123259 . T G . PASS . . . . . . 37.0 70.0 22 64.24 154.55 18.18 0 18.18 0/1
chr1 202129826 rs4309039 T C . PASS 0.1006000 0.5231000 0.5387000 0.4344000 0.6585000 0.4233000 36.59 70.0 66 968.21 9.82 43.94 0 43.94 0/1
chr1 202130754 rs3934648 T C . PASS 0.8729000 0.8012000 0.7748000 0.7664000 0.7382000 0.7955000 35.62 69.23 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 202163063 rs2361431 T C . PASS 0.2897000 0.8055000 0.7192000 0.8310000 0.9274000 0.6809000 36.2 70.0 45 446.63 13.33 33.33 0 33.33 0/1
chr1 202163364 rs2077598 C G . PASS 0.2617000 0.6412000 0.6677000 0.7654000 0.8967000 0.6212000 36.6 69.33 84 951.65 2.86 35.71 0 35.71 0/1
chr1 202178135 rs6665965 C G . PASS 0.5113000 0.5807000 0.6210000 0.5785000 0.5562000 0.5653000 36.28 70.0 119 1000.00 7.80 42.02 0 42.02 0/1
chr1 202183308 rs10920362 C T . PASS 0.4720000 0.4366000 0.3095000 0.4791000 0.2904000 0.4004000 36.59 70.0 54 1000.00 3.45 53.70 0 53.70 0/1
chr1 202197161 rs3795598 C T . PASS 0.1006000 0.2666000 0.2510000 0.4235000 0.2556000 0.2490000 35.67 70.0 35 590.04 3.49 51.43 0 51.43 0/1
chr1 202266607 rs788826 C T . PASS 0.3018000 0.6455000 0.7222000 0.5457000 0.6237000 0.5459000 37.0 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 202274936 rs705762 T C . PASS 0.2799000 0.6427000 0.7183000 0.5457000 0.6084000 0.5359000 36.67 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 202276494 rs896551 C T . PASS 0.2738000 0.6427000 0.7173000 0.5447000 0.6084000 0.5339000 36.83 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 202287206 rs788795 T C . PASS 0.3381000 0.7219000 0.7679000 0.6392000 0.7055000 0.6100000 36.36 70.0 112 1000.00 0.00 100.00 0 100.00 1/1
chr1 202287537 rs788794 G A . PASS 0.2791000 0.6182000 0.7163000 0.5268000 0.6074000 0.5280000 36.7 70.0 79 1000.00 0.00 100.00 0 100.00 1/1
chr1 202287813 rs788793 T C . PASS 0.3389000 0.7233000 0.7679000 0.6392000 0.7055000 0.6104000 36.89 69.81 107 1000.00 0.00 100.00 0 100.00 1/1
chr1 202318316 rs930734 A C . PASS 0.1241000 0.6009000 0.7212000 0.4871000 0.6094000 0.4780000 36.43 70.0 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 202386075 rs2843413 T C . PASS 0.8926000 0.9899000 1.0000000 0.9970000 0.9990000 0.9694000 36.73 69.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 202408518 rs4950849 C T . PASS 0.1861000 0.6052000 0.7262000 0.4881000 0.6227000 0.4988000 36.66 69.43 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 202408594 rs2293551 C T . PASS 0.1815000 0.6052000 0.7272000 0.4881000 0.6227000 0.4978000 36.74 69.57 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 202408751 rs2293552 A C . PASS 0.1868000 0.6052000 0.7262000 0.4881000 0.6227000 0.4990000 35.36 70.0 22 843.28 0.00 100.00 0 100.00 1/1
chr1 202440936 rs2362282 T A . PASS 0.1150000 0.5879000 0.7004000 0.4791000 0.5951000 0.4653000 37.0 68.07 49 1000.00 9.26 83.67 1 83.67 0/1
chr1 202457784 rs3820374 T A . PASS 0.1120000 0.6009000 0.7232000 0.4861000 0.6053000 0.4742000 36.56 69.07 55 1000.00 0.00 100.00 0 100.00 1/1
chr1 202568282 rs72750619 C T . PASS 0.0000000 0.0000000 0.0000000 0.0020000 0.0000000 0.0003994 35.8 70.0 43 649.49 0.93 46.51 0 46.51 0/1
chr1 202572105 rs55968420 GCC G . PASS 0.5333000 0.7248000 0.6974000 0.6322000 0.6564000 0.6368000 35.22 69.78 93 1000.00 2.36 97.85 0 97.85 1/1
chr1 202574784 rs1968583 G A . PASS 0.0794000 0.4597000 0.3621000 0.5746000 0.4397000 0.3588000 36.82 69.36 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 202616616 rs11589785 A G . PASS 0.4811000 0.7435000 0.7331000 0.8002000 0.7045000 0.6759000 36.72 70.0 118 1000.00 11.63 36.44 0 36.44 0/1
chr1 202616676 rs59815839 T C . PASS 0.3442000 0.2565000 0.4504000 0.2535000 0.2127000 0.3095000 37.0 70.0 107 940.35 5.19 28.97 0 28.97 0/1
chr1 202616687 rs58060874 T C . PASS 0.2110000 0.2003000 0.3304000 0.2038000 0.1125000 0.2129000 37.0 70.0 94 728.85 6.13 26.60 0 26.60 0/1
chr1 202616789 rs12121078 C T . PASS 0.0877000 0.3876000 0.3998000 0.5080000 0.4663000 0.3504000 37.0 70.0 17 459.37 0.00 76.47 0 76.47 0/1
chr1 202705455 rs1141109 G C . PASS 0.3230000 0.8343000 0.7837000 0.7714000 0.6452000 0.6396000 36.68 70.0 79 1000.00 0.87 48.10 0 48.10 0/1
chr1 202715244 rs3216061 G GA . PASS 0.3222000 0.8343000 0.7817000 0.7714000 0.6431000 0.6386000 37.0 70.0 42 577.40 6.35 42.86 0 42.86 0/1
chr1 202715284 rs1141108 G A . PASS 0.3222000 0.8343000 0.7837000 0.7714000 0.6442000 0.6392000 35.88 70.0 71 1000.00 0.18 45.07 0 45.07 0/1
chr1 202718028 rs1892163 A G . PASS 0.2360000 0.6715000 0.5208000 0.7425000 0.5685000 0.5204000 37.0 70.0 18 289.29 0.00 50.00 0 50.00 0/1
chr1 202718202 rs1892164 G A . PASS 0.2352000 0.6715000 0.5208000 0.7425000 0.5685000 0.5202000 37.0 69.5 66 1000.00 11.97 60.61 0 60.61 0/1
chr1 202722277 rs4950742 G A . PASS 0.2352000 0.6715000 0.5208000 0.7425000 0.5685000 0.5202000 37.0 70.0 12 56.73 33.33 25.00 0 25.00 0/1
chr1 202733238 rs3196669 C T . PASS 0.3230000 0.8343000 0.7679000 0.7714000 0.6401000 0.6354000 36.4 70.0 43 661.51 9.07 46.51 0 46.51 0/1
chr1 202978032 rs1418444 C G . PASS 0.4917000 0.4942000 0.3056000 0.5258000 0.4836000 0.4599000 37.0 70.0 12 219.65 11.90 58.33 0 58.33 0/1
chr1 202987770 rs782788 T C . PASS 0.5015000 0.2882000 0.1369000 0.4026000 0.3497000 0.3490000 37.0 68.89 26 641.14 5.13 69.23 0 69.23 0/1
chr1 202987796 rs782787 G A . PASS 0.4418000 0.2867000 0.1369000 0.4026000 0.3497000 0.3331000 37.0 67.5 10 271.59 0.00 80.00 0 80.00 0/1
chr1 203008174 rs61821060 G C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 37.0 70.0 43 1000.00 0.34 95.35 0 95.35 1/1
chr1 203008286 rs10920553 C G . PASS 0.3109000 0.5115000 0.5863000 0.6163000 0.5593000 0.5040000 36.33 70.0 40 582.84 22.22 45.00 0 45.00 0/1
chr1 203012705 rs7547566 C G . PASS 0.2073000 0.3429000 0.3274000 0.5378000 0.4294000 0.3600000 37.0 70.0 14 213.63 0.00 50.00 0 50.00 0/1
chr1 203023122 rs2291691 A C . PASS 0.2905000 0.1772000 0.1081000 0.2455000 0.2454000 0.2202000 34.75 70.0 48 451.20 0.00 33.33 0 33.33 0/1
chr1 203025209 rs11590950 G C . PASS 0.1740000 0.1643000 0.1052000 0.2247000 0.2382000 0.1815000 37.0 70.0 28 547.43 14.29 57.14 0 57.14 0/1
chr1 203026203 rs903362 T G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 0.9939000 0.9988000 37.0 70.0 11 419.85 0.00 100.00 0 100.00 1/1
chr1 203026214 rs10753933 T G . PASS 0.2761000 0.3948000 0.3909000 0.5567000 0.5419000 0.4239000 37.0 70.0 11 264.43 0.00 72.73 0 72.73 0/1
chr1 203030685 rs2270543 T C . PASS 0.4433000 0.4841000 0.4137000 0.5586000 0.5798000 0.4928000 35.91 70.0 25 339.75 5.09 44.00 0 44.00 0/1
chr1 203032877 rs72754783 C G . PASS 0.0000000 0.0000000 0.0000000 0.0020000 0.0000000 0.0003994 37.0 70.0 15 335.93 13.33 66.67 0 66.67 0/1
chr1 203032922 rs1416262 C T . PASS 0.2451000 0.2752000 0.2054000 0.3807000 0.3538000 0.2897000 37.0 70.0 41 637.76 6.16 46.34 0 46.34 0/1
chr1 203036757 rs2275354 T C . PASS 0.4183000 0.4856000 0.4107000 0.5606000 0.5767000 0.4856000 37.0 70.0 11 185.05 6.06 54.55 0 54.55 0/1
chr1 203040740 rs11583155 T C . PASS 0.5930000 0.5274000 0.4573000 0.6223000 0.6207000 0.5679000 37.0 70.0 25 309.99 24.00 40.00 0 40.00 0/1
chr1 203040816 rs2270540 G C . PASS 0.5250000 0.5216000 0.4573000 0.6223000 0.6207000 0.5491000 36.31 70.0 87 1000.00 0.66 40.23 0 40.23 0/1
chr1 203045042 rs903365 T C . PASS 0.6407000 0.5432000 0.4653000 0.6193000 0.6207000 0.5837000 35.91 70.0 26 336.74 4.90 42.31 0 42.31 0/1
chr1 203053768 rs903356 T C . PASS 0.9992000 0.9827000 0.8819000 0.9742000 0.9366000 0.9561000 37.0 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 203053870 rs72739504 C T . PASS 0.0000000 0.0000000 0.0000000 0.0020000 0.0041000 0.0011981 36.04 70.0 55 822.22 3.64 45.45 0 45.45 0/1
chr1 203054523 rs923950 A T . PASS 0.9992000 0.9755000 0.8800000 0.9692000 0.9387000 0.9541000 37.0 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 203055101 rs4950877 A G . PASS 0.5219000 0.6196000 0.5308000 0.5427000 0.4141000 0.5204000 37.0 70.0 69 1000.00 0.00 100.00 0 100.00 1/1
chr1 203137784 rs35823777 A ACT . PASS 0.7693000 0.7392000 0.4067000 0.8857000 0.8139000 0.7242000 36.75 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 203142405 rs2788529 A G . PASS 0.6853000 0.5447000 0.3343000 0.5994000 0.5624000 0.5539000 36.72 70.0 128 1000.00 0.00 100.00 0 100.00 1/1
chr1 203143395 rs3737872 T C . PASS 0.0802000 0.2565000 0.1141000 0.4175000 0.2229000 0.2071000 37.0 70.0 15 591.07 0.00 100.00 0 100.00 1/1
chr1 203148633 rs4950927 A G . PASS 1.0000000 1.0000000 1.0000000 0.9990000 0.9990000 0.9996000 36.5 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 203152801 rs880633 T C . PASS 0.1747000 0.3343000 0.3839000 0.5417000 0.4836000 0.3730000 36.58 70.0 86 1000.00 0.00 100.00 0 100.00 1/1
chr1 203153634 rs2071579 C G . PASS 0.1906000 0.3357000 0.3542000 0.5437000 0.4816000 0.3714000 37.0 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 203154532 rs1538372 A G . PASS 0.7141000 0.6484000 0.6627000 0.6829000 0.6524000 0.6763000 37.0 70.0 24 967.01 0.00 100.00 0 100.00 1/1
chr1 203155882 rs4950928 G C . PASS 0.6626000 0.8271000 0.8512000 0.8191000 0.8200000 0.7855000 37.0 70.0 13 503.38 0.00 100.00 0 100.00 1/1
chr1 203317162 rs7543148 C T . PASS 0.2708000 0.7925000 0.6528000 0.8608000 0.6800000 0.6184000 36.49 70.0 117 1000.00 0.00 100.00 0 100.00 1/1
chr1 203322477 rs6671650 T C . PASS 0.7489000 0.8660000 0.6022000 0.9423000 0.8824000 0.8005000 37.0 68.95 20 799.93 0.00 100.00 0 100.00 1/1
chr1 203322521 rs6658996 G C . PASS 0.8873000 0.9928000 1.0000000 1.0000000 0.9990000 0.9690000 37.0 69.3 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 203396821 rs6702330 C A . PASS 0.6331000 0.7550000 0.5437000 0.6809000 0.6084000 0.6368000 37.0 69.0 23 837.56 4.74 95.65 0 95.65 1/1
chr1 203452409 rs41313926 G A . PASS 0.0008000 0.0317000 0.0000000 0.0089000 0.0215000 0.0105830 37.0 70.0 72 1000.00 5.23 47.22 0 47.22 0/1
chr1 203452720 rs2233725 C T . PASS 0.0008000 0.0360000 0.0198000 0.0080000 0.0419000 0.0189700 36.44 70.0 88 1000.00 4.81 48.86 0 48.86 0/1
chr1 203453306 . C G . PASS . . . . . . 31.0 70.0 17 55.28 152.94 23.53 0 23.53 0/1
chr1 203456129 rs2233733 C T . PASS 0.0008000 0.0360000 0.0198000 0.0080000 0.0419000 0.0189700 37.0 70.0 11 143.27 0.00 45.45 0 45.45 0/1
chr1 203465396 rs2242199 T C . PASS 0.2912000 0.3487000 0.4692000 0.4125000 0.4233000 0.3852000 36.32 69.62 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 203465450 rs72743632 G A . PASS 0.0000000 0.0029000 0.0000000 0.0030000 0.0000000 0.0009984 37.0 68.0 17 334.06 0.00 58.82 0 58.82 0/1
chr1 203472119 rs72743637 G A . PASS 0.0008000 0.0360000 0.0188000 0.0070000 0.0389000 0.0179710 36.4 69.0 42 664.51 5.24 47.62 0 47.62 0/1
chr1 203472942 rs56073037 C T . PASS 0.0008000 0.0360000 0.0188000 0.0070000 0.0389000 0.0179710 37.0 70.0 26 682.91 1.62 73.08 0 73.08 0/1
chr1 203570807 rs2802781 T C . PASS 0.6679000 0.4986000 0.6478000 0.3827000 0.6145000 0.5727000 37.0 70.0 61 1000.00 3.92 59.02 0 59.02 0/1
chr1 203626364 rs7544854 C G . PASS 0.8018000 0.9870000 1.0000000 0.9980000 1.0000000 0.9455000 36.0 70.0 24 938.83 0.00 100.00 0 100.00 1/1
chr1 203652444 rs1419114 A G . PASS 0.6354000 0.9366000 0.9990000 0.8976000 0.8763000 0.8500000 37.0 70.0 62 1000.00 3.76 58.06 0 58.06 0/1
chr1 203667409 rs2228445 T C . PASS 0.6725000 0.9395000 0.9990000 0.8976000 0.8742000 0.8598000 35.87 70.0 98 1000.00 6.47 54.08 0 54.08 0/1
chr1 203740458 rs3820196 C A . PASS 0.2345000 0.3732000 0.6101000 0.0666000 0.2086000 0.2905000 36.2 70.0 25 502.68 16.00 60.00 0 60.00 0/1
chr1 203740462 rs3820195 G A . PASS 0.2345000 0.3732000 0.6101000 0.0666000 0.2086000 0.2905000 36.2 70.0 27 500.81 13.33 55.56 0 55.56 0/1
chr1 203740615 rs3737976 T C . PASS 0.3215000 0.4582000 0.1042000 0.5984000 0.4131000 0.3702000 36.65 70.0 79 1000.00 2.90 43.04 0 43.04 0/1
chr1 203741368 rs3737973 C A . PASS 0.3041000 0.4539000 0.1369000 0.5944000 0.4192000 0.3720000 34.33 70.0 13 276.17 13.68 69.23 0 69.23 0/1
chr1 203768328 rs7552670 T C . PASS 0.0484000 0.3213000 0.2887000 0.1173000 0.2290000 0.1837000 36.52 70.0 65 804.13 14.15 38.46 0 38.46 0/1
chr1 203769532 rs7540041 G A . PASS 0.0499000 0.3199000 0.2887000 0.1183000 0.2270000 0.1837000 35.88 70.0 61 1000.00 4.61 52.46 0 52.46 0/1
chr1 203774793 rs7532505 C T . PASS 0.0484000 0.3199000 0.2887000 0.1173000 0.2280000 0.1833000 37.0 70.0 12 140.26 20.00 41.67 0 41.67 0/1
chr1 203787700 rs4951260 T C . PASS 0.9228000 0.9942000 1.0000000 1.0000000 1.0000000 0.9788000 36.46 69.73 89 1000.00 0.92 98.88 0 100.00 1/1
chr1 203800735 rs2275325 G C . PASS 0.1694000 0.3761000 0.3244000 0.2445000 0.3190000 0.2736000 37.0 70.0 38 600.87 7.60 47.37 0 47.37 0/1
chr1 203803016 rs6694647 A G . PASS 0.9228000 0.9942000 1.0000000 1.0000000 1.0000000 0.9788000 36.33 70.0 18 704.37 0.00 100.00 0 100.00 1/1
chr1 203821200 rs7512877 G A . PASS 0.9228000 0.9942000 1.0000000 1.0000000 1.0000000 0.9788000 37.0 70.0 21 841.70 0.00 100.00 0 100.00 1/1
chr1 203850090 rs6702219 G A . PASS 0.5174000 0.4135000 0.5496000 0.5308000 0.4509000 0.4992000 36.76 70.0 85 1000.00 5.41 58.82 0 58.82 0/1
chr1 203924819 rs2810643 A G . PASS 0.5242000 0.6441000 0.5665000 0.6531000 0.6452000 0.5988000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 204082002 rs2293336 C T . PASS 0.0348000 0.4914000 0.2490000 0.3867000 0.4898000 0.3007000 37.0 70.0 25 435.30 10.46 52.00 0 52.00 0/1
chr1 204082323 rs760312 C T . PASS 0.2685000 0.5504000 0.2500000 0.4573000 0.5736000 0.4014000 36.56 70.0 72 866.60 7.41 37.50 0 37.50 0/1
chr1 204085609 rs7551756 A G . PASS 0.2489000 0.3184000 0.7292000 0.3887000 0.3119000 0.3956000 37.0 70.0 43 631.74 8.57 44.19 0 44.19 0/1
chr1 204094902 rs2692010 T C . PASS 0.7617000 0.9467000 1.0000000 0.9742000 0.9775000 0.9201000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 204095220 rs1064981 C T . PASS 0.0015000 0.0086000 0.0010000 0.0179000 0.0000000 0.0053914 36.76 70.0 89 1000.00 0.50 55.06 0 55.06 0/1
chr1 204103618 rs2293335 G A . PASS 0.1536000 0.6715000 0.5298000 0.6889000 0.5890000 0.4936000 36.42 69.68 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 204120952 rs3737655 G T . PASS 0.1770000 0.1859000 0.0724000 0.1581000 0.0838000 0.1352000 36.72 70.0 85 1000.00 0.00 100.00 0 100.00 1/1
chr1 204124865 rs2368564 C T . PASS 0.7405000 0.3012000 0.2063000 0.2594000 0.2025000 0.3704000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 204125089 rs3795575 G A . PASS 0.1778000 0.1844000 0.0704000 0.1382000 0.0757000 0.1292000 37.0 68.57 14 549.30 0.00 100.00 0 100.00 1/1
chr1 204125464 . T TCAGACAGACAGA . PASS . . . . . . 36.62 70.0 117 1000.00 1.71 88.89 0 98.29 1/1
chr1 204126378 rs3730102 G A . PASS 0.1687000 0.1844000 0.0704000 0.1382000 0.0777000 0.1272000 36.14 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 204128832 rs11571084 C T . PASS 0.0023000 0.0303000 0.0000000 0.0358000 0.0072000 0.0133790 35.8 68.0 11 340.40 3.64 90.91 0 90.91 0/1
chr1 204129554 rs1917539 T C . PASS 0.3585000 0.2046000 0.0903000 0.1372000 0.0920000 0.1867000 35.84 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 204131031 rs11571082 C T . PASS 0.2723000 0.1729000 0.0565000 0.1352000 0.0920000 0.1524000 36.0 70.0 12 453.75 0.00 100.00 0 100.00 1/1
chr1 204131186 rs5705 T G . PASS 0.3177000 0.1801000 0.0784000 0.1372000 0.0920000 0.1701000 36.56 69.81 108 1000.00 0.31 98.15 0 100.00 1/1
chr1 204159787 rs4889 G C . PASS 0.4009000 0.3156000 0.4216000 0.2545000 0.2270000 0.3299000 37.0 70.0 44 666.36 4.55 45.45 0 45.45 0/1
chr1 204161947 rs12998 C T . PASS 0.0038000 0.0317000 0.0238000 0.0408000 0.0245000 0.0232000 36.6 70.0 66 1000.00 2.42 45.45 0 45.45 0/1
chr1 204167672 rs3795573 T C . PASS 0.2965000 0.1369000 0.0288000 0.1620000 0.0930000 0.1538000 37.0 70.0 25 1000.00 0.00 100.00 0 100.00 1/1
chr1 204170993 rs6700426 A G . PASS 0.3850000 0.0965000 0.0298000 0.0527000 0.0552000 0.1424000 34.33 70.0 22 253.22 10.10 40.91 0 40.91 0/1
chr1 204172060 rs6689599 G C . PASS 0.2413000 0.0836000 0.0060000 0.0517000 0.0297000 0.0927000 36.83 70.0 155 1000.00 3.78 45.16 0 45.16 0/1
chr1 204172096 rs6689607 G A . PASS 0.2352000 0.0836000 0.0060000 0.0517000 0.0297000 0.0911000 36.52 70.0 160 1000.00 5.42 46.88 0 46.88 0/1
chr1 204197048 rs7519944 C T . PASS 0.6914000 0.5389000 0.4802000 0.4344000 0.3579000 0.5110000 34.82 70.0 11 399.97 0.00 100.00 0 100.00 1/1
chr1 204198209 rs3795571 A G . PASS 0.6967000 0.5389000 0.4802000 0.4344000 0.3579000 0.5124000 36.42 70.0 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 204199614 rs10900562 C T . PASS 0.6914000 0.5375000 0.4802000 0.4334000 0.3579000 0.5106000 36.34 70.0 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 204210750 rs4412655 C A . PASS 0.1846000 0.4467000 0.4762000 0.3280000 0.2832000 0.3277000 36.65 69.41 35 1000.00 1.34 97.14 0 97.14 1/1
chr1 204210791 rs4951325 G A . PASS 0.1853000 0.4467000 0.4762000 0.3280000 0.2832000 0.3279000 36.73 69.78 90 1000.00 0.00 100.00 0 100.00 1/1
chr1 204213612 rs4265489 G A . PASS 0.6921000 0.5360000 0.4821000 0.4324000 0.3548000 0.5102000 36.89 70.0 105 1000.00 0.00 100.00 0 100.00 1/1
chr1 204216410 rs4951329 C T . PASS 0.7670000 0.7752000 0.8085000 0.6213000 0.5470000 0.7043000 36.25 70.0 17 579.96 2.21 94.12 0 94.12 1/1
chr1 204216468 rs4512713 C T . PASS 0.6589000 0.7608000 0.8085000 0.6183000 0.5256000 0.6689000 36.28 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 204216601 rs4288652 G A . PASS 0.6589000 0.7608000 0.8085000 0.6183000 0.5194000 0.6677000 36.65 70.0 34 1000.00 1.78 97.06 0 100.00 1/1
chr1 204219559 rs3795570 T G . PASS 0.7466000 0.7709000 0.8085000 0.6193000 0.5266000 0.6939000 36.52 70.0 25 992.61 0.00 100.00 0 100.00 1/1
chr1 204230581 rs3795569 G A . PASS 0.5068000 0.6960000 0.8095000 0.5268000 0.5051000 0.5976000 35.92 69.8 100 1000.00 0.00 100.00 0 100.00 1/1
chr1 204234196 . G GGT . PASS . . . . . . 36.05 70.0 19 685.51 0.00 100.00 0 100.00 1/1
chr1 204237416 rs10900571 C T . PASS 0.4750000 0.7637000 0.8046000 0.6610000 0.5460000 0.6326000 36.79 69.64 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 204315882 rs35603588,rs200317938 C CT . PASS 0.2753000 0.6499000 0.6835000 0.6610000 0.5992000 0.5501000 37.0 69.6 11 337.09 10.91 90.91 0 90.91 0/1
chr1 204379617 rs3014626 T C . PASS 0.8880000 0.9914000 1.0000000 0.9980000 1.0000000 0.9689000 36.79 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 204409159 rs35627670,rs72501024 T TC . PASS 0.6732000 0.9899000 1.0000000 0.9990000 1.0000000 0.9121000 37.0 70.0 10 366.64 0.00 100.00 0 100.00 1/1
chr1 204409281 rs3014631 C G . PASS 0.6732000 0.9899000 1.0000000 0.9990000 1.0000000 0.9121000 36.28 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 204413297 rs2292459 C T . PASS 0.4236000 0.7723000 0.4940000 0.7753000 0.7004000 0.6108000 36.42 70.0 83 1000.00 0.00 100.00 0 100.00 1/1
chr1 204413299 rs2292460 G A . PASS 0.3608000 0.7594000 0.3869000 0.7744000 0.6534000 0.5615000 36.41 70.0 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 204418198 rs2271427 T C . PASS 0.5666000 0.8357000 0.5685000 0.7803000 0.6984000 0.6729000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 204418889 rs2999492 C T . PASS 0.4614000 0.7738000 0.4911000 0.7744000 0.6922000 0.6186000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 204418939 rs3014637 C T . PASS 0.3502000 0.7579000 0.3859000 0.7724000 0.6534000 0.5579000 36.28 69.6 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 204426028 . ACACACACC ACA . PASS . . . . . . . . 15 366.29 53.33 26.67 0 100.00 0/1
chr1 204426028 . ACACACACC A . PASS . . . . . . 36.45 70.0 15 366.29 19.39 73.33 0 100.00 0/1
chr1 204426052 rs2999490 A C . PASS 0.3502000 0.8184000 0.4226000 0.7813000 0.6616000 0.5771000 36.37 70.0 20 700.35 3.16 95.00 0 95.00 1/1
chr1 204429838 rs2271414 C G . PASS 0.3487000 0.8991000 0.8224000 0.9901000 0.9387000 0.7644000 37.0 70.0 24 962.86 0.00 100.00 0 100.00 1/1
chr1 204433093 rs2271415 A C . PASS 0.2474000 0.8098000 0.4236000 0.7813000 0.6616000 0.5489000 36.71 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 204433511 rs11455991 T TC . PASS 0.6989000 0.9827000 0.9990000 0.9970000 0.9908000 0.9155000 36.31 69.43 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 204438334 rs1124777 C T . PASS 0.2413000 0.8948000 0.8194000 0.9841000 0.9100000 0.7280000 36.47 69.56 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 204438643 rs1553921 G T . PASS 0.2368000 0.8963000 0.8194000 0.9841000 0.9110000 0.7272000 35.9 69.8 98 1000.00 0.00 100.00 0 100.00 1/1
chr1 204495595 rs200388119,rs373025364 G GT . PASS . . . . . . 36.56 69.51 56 1000.00 7.14 71.43 0 91.07 0/1
chr1 204497913 rs2169137 G C . PASS 0.7965000 0.7161000 0.9504000 0.7396000 0.7382000 0.7935000 37.0 70.0 12 461.62 0.00 100.00 0 100.00 1/1
chr1 204501383 rs4252697 C T . PASS 0.0590000 0.0893000 0.4018000 0.2207000 0.2301000 0.1981000 35.77 70.0 80 1000.00 7.56 48.75 0 48.75 0/1
chr1 204512100 rs4252717 T C . PASS 0.2073000 0.6095000 0.7024000 0.6879000 0.5961000 0.5351000 37.0 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 204515863 rs2290855 C T . PASS 0.2148000 0.6095000 0.7024000 0.6879000 0.5941000 0.5367000 35.5 70.0 16 608.82 0.00 100.00 0 100.00 1/1
chr1 204516025 rs2290854 A G . PASS 0.2156000 0.6110000 0.7024000 0.6918000 0.6012000 0.5393000 36.0 70.0 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 204518842 rs4245739 C A . PASS 0.7685000 0.7147000 0.9504000 0.7396000 0.7382000 0.7859000 37.0 70.0 16 628.69 0.00 100.00 0 100.00 1/1
chr1 204587047 rs11588857 G A . PASS 0.0575000 0.0922000 0.3075000 0.2237000 0.2536000 0.1843000 36.43 69.52 89 1000.00 11.72 47.19 0 47.19 0/1
chr1 204587240 rs3747632 G A . PASS 0.0318000 0.5014000 0.3383000 0.4294000 0.3170000 0.2941000 36.83 70.0 119 1000.00 10.11 59.66 0 59.66 0/1
chr1 204587569 rs3747631 G C . PASS 0.0575000 0.0922000 0.3095000 0.2237000 0.2536000 0.1847000 37.0 70.0 121 1000.00 2.96 43.80 0 43.80 0/1
chr1 204588140 rs3747630 G A . PASS 0.0847000 0.1153000 0.3234000 0.2545000 0.2873000 0.2107000 36.59 70.0 147 1000.00 7.10 40.14 0 40.14 0/1
chr1 204589101 rs3789044 G A . PASS 0.0446000 0.0908000 0.3085000 0.2247000 0.2413000 0.1787000 36.59 70.0 52 1000.00 1.99 55.77 0 55.77 0/1
chr1 204603026 rs7542085 C G . PASS 0.4470000 0.5749000 0.3710000 0.4801000 0.4744000 0.4615000 36.57 70.0 110 1000.00 3.57 50.91 0 50.91 0/1
chr1 204884821 rs10900431 T G . PASS 0.1785000 0.4496000 0.4593000 0.1869000 0.2945000 0.2969000 37.0 70.0 72 1000.00 0.08 48.61 0 48.61 0/1
chr1 204884836 rs10900432 T A . PASS 0.4713000 0.6066000 0.4891000 0.4553000 0.3865000 0.4738000 35.54 70.0 79 1000.00 1.17 51.90 0 51.90 0/1
chr1 204884871 rs10900433 G A . PASS 0.1793000 0.4496000 0.4593000 0.1869000 0.2771000 0.2937000 36.43 70.0 78 1000.00 4.03 53.85 0 53.85 0/1
chr1 204921258 rs12141283 A G . PASS 0.0711000 0.2983000 0.0794000 0.4493000 0.3896000 0.2424000 37.0 70.0 58 878.98 35.28 44.83 0 44.83 0/1
chr1 204924020 rs3795564 C T . PASS 0.0000000 0.0043000 0.0089000 0.0089000 0.0102000 0.0061901 36.84 69.74 148 1000.00 1.21 51.35 0 51.35 0/1
chr1 204927037 rs72751470 T C . PASS 0.0000000 0.0029000 0.0099000 0.0060000 0.0102000 0.0055910 37.0 70.0 13 262.56 9.62 61.54 0 61.54 0/1
chr1 204939899 rs11240319 T C . PASS 0.2095000 0.0187000 0.0060000 0.0070000 0.0102000 0.0625000 37.0 70.0 31 459.01 4.61 45.16 0 45.16 0/1
chr1 204939917 rs6666095 G C . PASS 0.2095000 0.0187000 0.0060000 0.0070000 0.0102000 0.0625000 37.0 70.0 23 270.08 1.93 39.13 0 39.13 0/1
chr1 204942697 rs72751493 G A . PASS 0.0000000 0.0029000 0.0050000 0.0060000 0.0102000 0.0045927 35.0 70.0 10 176.04 0.00 60.00 0 60.00 0/1
chr1 204943285 rs2595945 A T . PASS 0.7080000 0.9755000 0.9950000 0.9930000 0.9898000 0.9151000 35.36 70.0 49 698.81 13.91 44.90 0 44.90 0/1
chr1 204943992 rs2794861 A G . PASS 0.7534000 0.9813000 0.9950000 0.9930000 0.9898000 0.9279000 36.75 70.0 80 1000.00 0.83 60.00 0 60.00 0/1
chr1 204944441 rs56223230 G A . PASS 0.0015000 0.0029000 0.0050000 0.0060000 0.0102000 0.0049920 36.54 70.0 91 1000.00 5.49 57.14 0 57.14 0/1
chr1 204944454 rs55969362 G A . PASS 0.0000000 0.0029000 0.0050000 0.0060000 0.0102000 0.0045927 36.76 70.0 88 1000.00 5.66 55.68 0 55.68 0/1
chr1 204944536 rs55778126 A G . PASS 0.0000000 0.0029000 0.0050000 0.0060000 0.0102000 0.0045927 36.77 70.0 96 1000.00 3.21 54.17 0 54.17 0/1
chr1 204945746 rs6668366 G C . PASS 0.2262000 0.0648000 0.0099000 0.0706000 0.0644000 0.0974000 37.0 70.0 12 94.34 16.67 33.33 0 33.33 0/1
chr1 204945814 rs55726173 C T . PASS 0.0000000 0.0029000 0.0050000 0.0060000 0.0102000 0.0045927 35.84 69.35 57 1000.00 13.70 54.39 0 54.39 0/1
chr1 204945934 rs6657372 A G . PASS 0.2057000 0.0648000 0.0089000 0.0706000 0.0654000 0.0921000 36.66 70.0 125 1000.00 10.28 56.80 0 56.80 0/1
chr1 204946764 rs6663324 T C . PASS 0.2262000 0.0677000 0.0139000 0.0765000 0.0757000 0.1020000 36.6 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 204948659 rs6667532 A G . PASS 0.2050000 0.0692000 0.0139000 0.0775000 0.0767000 0.0970000 36.76 69.8 100 1000.00 0.00 100.00 0 100.00 1/1
chr1 204948735 rs6667633 A G . PASS 0.2035000 0.0403000 0.0089000 0.0557000 0.0245000 0.0771000 36.73 69.55 88 1000.00 2.27 50.00 0 50.00 0/1
chr1 204949645 rs16854859 G A . PASS 0.2481000 0.0461000 0.0089000 0.0557000 0.0245000 0.0897000 36.4 70.0 48 646.45 15.83 41.67 0 41.67 0/1
chr1 204951184 rs11302888 CT C . PASS 0.2027000 0.0663000 0.0089000 0.0716000 0.0654000 0.0917000 36.47 70.0 70 1000.00 0.32 51.43 0 51.43 0/1
chr1 204954993 rs2278795 A G . PASS 0.4637000 0.2983000 0.2996000 0.3837000 0.3742000 0.3742000 36.08 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 204960362 rs72753445 C T . PASS 0.0000000 0.0029000 0.0050000 0.0060000 0.0112000 0.0047923 35.5 70.0 25 536.59 3.00 64.00 0 64.00 0/1
chr1 204966428 rs2802808 C G . PASS 0.2080000 0.2867000 0.4345000 0.2545000 0.3957000 0.3105000 36.54 69.85 131 1000.00 0.00 100.00 0 100.00 1/1
chr1 204966690 rs2794858 G A . PASS 0.6634000 0.9726000 0.9990000 0.9801000 0.9898000 0.9012000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 204970243 rs4950976 A G . PASS 0.1293000 0.1830000 0.2391000 0.2724000 0.3252000 0.2258000 36.71 70.0 68 1000.00 2.51 60.29 0 60.29 0/1
chr1 204970302 rs4951151 T C . PASS 0.1573000 0.1787000 0.2401000 0.2575000 0.3292000 0.2306000 35.3 70.0 178 1000.00 5.96 55.62 0 55.62 0/1
chr1 204970495 rs4951152 C A . PASS 0.1286000 0.1830000 0.2351000 0.2724000 0.2822000 0.2165000 37.0 70.0 16 165.84 25.00 37.50 0 37.50 0/1
chr1 204978533 rs1530745 A G . PASS 0.6694000 0.5490000 0.4573000 0.7406000 0.7883000 0.6476000 37.0 70.0 10 62.74 0.00 30.00 0 30.00 0/1
chr1 205027561 rs9787409 G T . PASS 0.1415000 0.2781000 0.4802000 0.1501000 0.4663000 0.2937000 36.0 70.0 65 1000.00 1.54 55.38 0 55.38 0/1
chr1 205027737 rs2275697 G A . PASS 0.1369000 0.2781000 0.4831000 0.1511000 0.4663000 0.2933000 35.81 70.0 136 1000.00 2.29 59.56 0 59.56 0/1
chr1 205028823 rs5780262 A AG . PASS 0.0325000 0.2522000 0.4593000 0.1133000 0.3006000 0.2175000 37.0 70.0 46 732.44 8.70 47.83 0 47.83 0/1
chr1 205028883 rs35182846 CAG C . PASS 0.0719000 0.2925000 0.0526000 0.5050000 0.1656000 0.2039000 34.29 70.0 20 174.16 21.43 35.00 0 35.00 0/1
chr1 205031116 rs2229866 C T . PASS 0.3230000 0.5591000 0.8760000 0.3390000 0.7372000 0.5511000 37.0 70.0 99 1000.00 9.53 46.46 0 46.46 0/1
chr1 205031449 rs7545698 A G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 205033374 rs2305277 T C . PASS 0.3457000 0.5591000 0.8760000 0.3390000 0.7372000 0.5571000 37.0 70.0 21 447.33 14.65 61.90 0 61.90 0/1
chr1 205034434 rs3901740 G T . PASS 0.0129000 0.2493000 0.4573000 0.1133000 0.2975000 0.2109000 37.0 70.0 27 341.59 19.53 40.74 0 40.74 0/1
chr1 205034852 rs143128501,rs55993022 A ATGGCCTGCTGCACTGGTCAGGGCCGGTGGTC . PASS 0.0719000 0.2911000 0.0526000 0.5020000 0.1636000 0.2027000 36.86 70.0 43 193.45 17.05 20.93 0 20.93 0/1
chr1 205035455 rs16937 A G . PASS 0.4501000 0.6196000 0.5774000 0.6759000 0.6462000 0.5829000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 205038731 rs2305275 C T . PASS 0.5008000 0.6167000 0.5010000 0.7097000 0.6063000 0.5795000 36.43 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 205039288 rs12134724 T C . PASS 0.0159000 0.2464000 0.0010000 0.4573000 0.1442000 0.1585000 37.0 70.0 16 632.84 0.00 100.00 0 100.00 1/1
chr1 205041015 rs11240349 G A . PASS 0.0696000 0.2738000 0.0516000 0.4573000 0.1452000 0.1869000 34.0 70.0 12 429.73 0.00 100.00 0 100.00 1/1
chr1 205052939 rs4950979 G A . PASS 0.5008000 0.8718000 0.9762000 0.8400000 0.9243000 0.7987000 36.39 70.0 79 1000.00 0.00 100.00 0 100.00 1/1
chr1 205053219 rs4951168 C T . PASS 0.5545000 0.8890000 0.9762000 0.8489000 0.9254000 0.8173000 37.0 70.0 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 205063949 rs3738154 C T . PASS 0.3548000 0.2752000 0.0903000 0.4533000 0.2280000 0.2855000 36.54 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 205065733 rs11577406 G T . PASS 0.1097000 0.2594000 0.0585000 0.4294000 0.0992000 0.1823000 35.59 70.0 17 646.44 0.00 100.00 0 100.00 1/1
chr1 205074017 . ATG ACA . PASS . . . . . . 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 205083865 rs11240360 T C . PASS 0.0666000 0.2565000 0.0437000 0.4274000 0.0982000 0.1669000 36.56 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 205084120 rs7515178 G A . PASS 0.3956000 0.2997000 0.0655000 0.4742000 0.2546000 0.3041000 36.48 70.0 23 913.22 0.00 100.00 0 100.00 1/1
chr1 205090885 rs61822619 C G . PASS 0.0666000 0.2565000 0.0437000 0.4274000 0.0982000 0.1669000 36.0 70.0 12 449.60 0.00 100.00 0 100.00 1/1
chr1 205130413 rs3851294 A G . PASS 0.9947000 0.9424000 1.0000000 0.8946000 0.9571000 0.9611000 36.13 70.0 69 1000.00 0.00 100.00 0 100.00 1/1
chr1 205210827 rs77588763 C T . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 70.0 98 1000.00 5.56 36.73 0 36.73 0/1
chr1 205225457 rs1172147 G A . PASS 0.1059000 0.2176000 0.0565000 0.3807000 0.0808000 0.1617000 36.43 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 205226288 rs1172113 T C . PASS 0.1467000 0.2378000 0.1042000 0.3936000 0.1166000 0.1945000 36.7 69.51 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 205228321 rs11344770 CT C . PASS 0.1263000 0.2579000 0.1508000 0.4046000 0.1779000 0.2155000 35.59 70.0 18 599.74 1.96 94.44 0 94.44 1/1
chr1 205228433 rs2307521 C CAG . PASS 0.6271000 0.5720000 0.5417000 0.6233000 0.5082000 0.5783000 36.45 70.0 108 1000.00 1.00 99.07 0 100.00 1/1
chr1 205238275 rs1768586 A G . PASS 0.1036000 0.1902000 0.0516000 0.3549000 0.0736000 0.1498000 36.55 70.0 80 1000.00 0.00 100.00 0 100.00 1/1
chr1 205238530 rs1779411 C T . PASS 0.0287000 0.1816000 0.0377000 0.3549000 0.0726000 0.1258000 36.76 69.73 148 1000.00 0.00 100.00 0 100.00 1/1
chr1 205239031 rs1668870 C G . PASS 0.0310000 0.1830000 0.0377000 0.3539000 0.0726000 0.1264000 36.73 69.7 133 1000.00 0.00 100.00 0 100.00 1/1
chr1 205239121 rs1768585 C G . PASS 0.7920000 0.5865000 0.5913000 0.6203000 0.6339000 0.6577000 36.27 69.59 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 205239185 rs35344321,rs142934137 A AT . PASS 0.0280000 0.1830000 0.0377000 0.3539000 0.0726000 0.1256000 37.0 70.0 13 491.94 0.00 100.00 0 100.00 1/1
chr1 205240251 rs1668867 C T . PASS 0.1483000 0.1931000 0.0516000 0.3549000 0.0736000 0.1619000 37.0 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 205240913 rs9659978 A G . PASS 0.9947000 0.9424000 1.0000000 0.8976000 0.9571000 0.9617000 36.04 70.0 25 984.75 0.00 100.00 0 100.00 1/1
chr1 205272926 rs1106201 C T . PASS 0.1399000 0.4150000 0.4603000 0.2962000 0.3916000 0.3231000 36.29 70.0 47 524.15 8.01 36.17 0 36.17 0/1
chr1 205272983 rs1106202 C G . PASS 0.1399000 0.4135000 0.4603000 0.2952000 0.3906000 0.3225000 37.0 70.0 42 588.83 1.59 42.86 0 42.86 0/1
chr1 205274174 rs10793728 A G . PASS 0.6233000 0.7810000 0.4960000 0.7803000 0.5920000 0.6450000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 205275421 rs4951197 A G . PASS 0.9259000 0.9928000 1.0000000 0.9990000 1.0000000 0.9792000 36.72 70.0 86 1000.00 0.00 100.00 0 100.00 1/1
chr1 205290794 rs3738746 G A . PASS 0.4879000 0.1974000 0.0913000 0.2972000 0.2853000 0.2899000 36.36 70.0 182 1000.00 2.06 51.65 0 51.65 0/1
chr1 205290965 rs35321028 C T . PASS 0.2708000 0.1354000 0.0268000 0.2773000 0.1708000 0.1847000 37.0 70.0 24 396.53 0.00 50.00 0 50.00 0/1
chr1 205307789 rs11240441 G A . PASS 0.2020000 0.1095000 0.0268000 0.2704000 0.1380000 0.1552000 37.0 70.0 16 462.38 11.54 81.25 0 81.25 0/1
chr1 205308335 rs1105385 G A . PASS 0.2247000 0.1354000 0.0317000 0.2942000 0.2035000 0.1833000 36.68 70.0 75 1000.00 9.73 49.33 0 49.33 0/1
chr1 205308368 rs1105387 C T . PASS 0.2247000 0.1340000 0.0308000 0.2813000 0.2025000 0.1801000 36.59 70.0 111 1000.00 8.98 52.25 0 52.25 0/1
chr1 205308591 rs1105388 C T . PASS 0.2360000 0.1354000 0.0308000 0.2843000 0.2025000 0.1839000 36.0 70.0 20 396.56 6.67 60.00 0 60.00 0/1
chr1 205312280 rs7549293 C G . PASS 0.6369000 0.5620000 0.6448000 0.5467000 0.7086000 0.6240000 37.0 70.0 35 1000.00 3.03 97.14 0 100.00 1/1
chr1 205320370 rs12139589 A G . PASS 0.1415000 0.1110000 0.2133000 0.2167000 0.3395000 0.2055000 37.0 69.8 29 89.09 42.76 17.24 0 17.24 0/1
chr1 205320469 rs4951205 G A . PASS 0.2148000 0.4265000 0.4722000 0.3191000 0.2781000 0.3293000 37.0 68.69 39 393.16 5.13 33.33 0 33.33 0/1
chr1 205385498 rs6688045 C T . PASS 0.5272000 0.8746000 0.9990000 0.8330000 0.9284000 0.8101000 35.67 70.0 17 280.28 16.99 52.94 0 52.94 0/1
chr1 205389653 rs72748911 C T . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 35.74 68.95 35 631.80 4.21 54.29 0 54.29 0/1
chr1 205492756 rs7529442 A G . PASS 0.9531000 0.9352000 0.7659000 0.9642000 0.9847000 0.9213000 36.56 70.0 46 944.87 12.40 58.70 0 58.70 0/1
chr1 205493545 rs41264889 C T . PASS 0.0855000 0.1138000 0.1111000 0.0417000 0.0961000 0.0879000 36.0 68.33 28 372.49 23.81 42.86 0 42.86 0/1
chr1 205495392 rs2297837 A G . PASS 0.8669000 0.9280000 0.7639000 0.9622000 0.9847000 0.8968000 37.0 70.0 28 635.12 11.90 64.29 0 64.29 0/1
chr1 205495976 rs1544154 A G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.38 70.0 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 205555145 rs7531623 G A . PASS 0.5189000 0.4654000 0.2143000 0.4235000 0.4519000 0.4179000 37.0 70.0 37 232.10 7.81 24.32 0 24.32 0/1
chr1 205561494 . CTC C . PASS . . . . . . 35.91 70.0 42 639.94 3.03 52.38 0 52.38 0/1
chr1 205561511 rs6593956 T A . PASS 0.7496000 0.7882000 0.8998000 0.8231000 0.7372000 0.7975000 37.0 70.0 32 410.08 12.98 40.62 0 40.62 0/1
chr1 205562202 rs7553871 G A . PASS 0.4455000 0.6671000 0.7222000 0.7833000 0.6851000 0.6466000 36.48 69.13 46 777.78 4.35 50.00 0 50.00 0/1
chr1 205562324 rs4951244 C T . PASS 0.0000000 0.0159000 0.0000000 0.0179000 0.0072000 0.0071885 37.0 70.0 13 179.02 15.38 46.15 0 46.15 0/1
chr1 205568213 rs2282449 C T . PASS 0.1430000 0.3919000 0.6399000 0.1849000 0.4877000 0.3532000 36.0 70.0 49 798.51 13.95 48.98 0 48.98 0/1
chr1 205568390 rs2282450 T A . PASS 0.4259000 0.4251000 0.6458000 0.2157000 0.5082000 0.4439000 35.4 69.33 52 1000.00 9.74 57.69 0 57.69 0/1
chr1 205568438 rs2282451 G T . PASS 0.1536000 0.3948000 0.6399000 0.1859000 0.4611000 0.3514000 35.91 70.0 16 362.68 17.05 68.75 0 68.75 0/1
chr1 205589574 rs1064406 C T . PASS 0.1460000 0.1153000 0.3700000 0.0706000 0.2699000 0.1959000 37.0 70.0 87 1000.00 5.08 43.68 0 43.68 0/1
chr1 205594652 rs11240541 G C . PASS 0.2239000 0.1311000 0.3819000 0.0994000 0.3088000 0.2344000 37.0 70.0 16 207.61 17.86 43.75 0 43.75 0/1
chr1 205595068 rs12048270 A G . PASS 0.2239000 0.1311000 0.3819000 0.0994000 0.3088000 0.2344000 37.0 70.0 25 477.06 11.43 56.00 0 56.00 0/1
chr1 205633573 rs56927917 T C . PASS 0.0772000 0.0115000 0.0357000 0.0109000 0.0736000 0.0457000 36.2 70.0 77 964.86 7.19 38.96 0 38.96 0/1
chr1 205687348 . CTTTTTTCTTT CTTTTTTC . PASS . . . . . . . . 10 303.94 40.00 10.00 0 100.00 0/1
chr1 205687348 rs71709139 CTTTTTTCTTT C . PASS 0.1362000 0.2522000 0.0089000 0.4085000 0.1237000 0.1789000 37.0 70.0 10 303.94 4.44 90.00 0 100.00 0/1
chr1 205689807 rs823094 T G . PASS 0.1959000 0.2594000 0.0040000 0.4095000 0.1237000 0.1949000 37.0 70.0 15 586.92 0.00 100.00 0 100.00 1/1
chr1 205739396 rs823139 T G . PASS 0.4410000 0.7767000 0.8462000 0.8579000 0.7904000 0.7210000 35.8 70.0 10 366.07 0.00 100.00 0 100.00 1/1
chr1 205744138 rs708725 G T . PASS 0.1437000 0.2565000 0.0030000 0.4056000 0.1196000 0.1789000 36.5 69.17 24 950.84 0.00 100.00 0 100.00 1/1
chr1 205764640 rs823156 G A . PASS 0.3381000 0.7464000 0.7550000 0.8101000 0.7260000 0.6492000 36.05 69.47 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 205766159 rs5780304 CA C . PASS 0.5250000 0.8026000 0.7560000 0.8738000 0.7495000 0.7238000 36.25 70.0 16 611.28 0.00 100.00 0 100.00 1/1
chr1 205767885 rs708727 G A . PASS 0.0227000 0.2291000 0.0030000 0.3966000 0.1196000 0.1414000 36.08 70.0 65 1000.00 0.00 100.00 0 100.00 1/1
chr1 205801872 rs1361754 A G . PASS 0.3487000 0.3112000 0.0129000 0.5219000 0.2004000 0.2817000 37.0 70.0 80 1000.00 0.00 100.00 0 100.00 1/1
chr1 205814497 rs1891460 T C . PASS 0.8744000 0.8386000 0.7411000 0.9344000 0.7914000 0.8385000 36.49 69.71 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 205887232 rs9438401 A T . PASS 0.3033000 0.6571000 0.3442000 0.6531000 0.6115000 0.4910000 36.6 70.0 73 984.75 1.37 41.10 0 41.10 0/1
chr1 205890679 rs12759719 T C . PASS 0.9168000 0.9395000 0.8849000 0.8926000 0.9448000 0.9141000 37.0 70.0 47 494.39 2.39 34.04 0 34.04 0/1
chr1 205896475 rs7366204 C T . PASS 0.7867000 0.9236000 0.8879000 0.8897000 0.9090000 0.8706000 37.0 70.0 14 259.55 7.14 57.14 0 57.14 0/1
chr1 205896948 rs3811424 A G . PASS 0.3843000 0.6657000 0.3810000 0.6581000 0.6196000 0.5236000 35.0 70.0 21 381.55 7.14 57.14 0 57.14 0/1
chr1 206145468 . G T . PASS . . . . . . 34.43 42.29 81 268.34 49.03 17.28 0 17.28 0/1
chr1 206239403 rs28602496 C T . PASS 0.1218000 0.0764000 0.0744000 0.0626000 0.1994000 0.1092000 36.29 70.0 52 509.10 13.35 32.69 0 32.69 0/1
chr1 206239415 rs28639473 C T . PASS 0.0106000 0.0634000 0.0744000 0.0626000 0.1994000 0.0781000 36.48 70.0 67 714.57 17.78 34.33 0 34.33 0/1
chr1 206239574 rs28391411 T C . PASS 0.4448000 0.1110000 0.0744000 0.0646000 0.1994000 0.1997000 36.4 70.0 52 634.42 6.92 38.46 0 38.46 0/1
chr1 206240271 rs28523378 G A . PASS 0.3669000 0.2017000 0.0982000 0.0686000 0.2168000 0.2007000 37.0 70.0 21 238.49 11.90 38.10 0 38.10 0/1
chr1 206327510 rs61742539 T C . PASS 0.3744000 0.1628000 0.0169000 0.2038000 0.0501000 0.1755000 37.0 70.0 38 646.79 0.00 50.00 0 50.00 0/1
chr1 206328647 rs28694519 G C . PASS 0.6316000 0.1873000 0.0169000 0.2107000 0.0634000 0.2508000 37.0 70.0 42 755.91 3.46 52.38 0 52.38 0/1
chr1 206328803 rs41302235 T C . PASS 0.3911000 0.1671000 0.0169000 0.2107000 0.0634000 0.1845000 36.08 70.0 122 1000.00 0.50 42.62 0 42.62 0/1
chr1 206506599 rs200737698 C T . PASS . . . . . . 37.0 70.0 17 208.75 5.04 41.18 0 41.18 0/1
chr1 206506763 . C T . PASS . . . . . . 37.0 70.0 18 205.75 77.78 38.89 0 38.89 0/1
chr1 206506805 rs141380001 C T . PASS 0.8593000 0.9697000 0.9593000 0.9761000 0.9785000 0.9415000 36.5 61.96 24 954.99 0.00 100.00 0 100.00 1/1
chr1 206513871 rs150293305 AC A . PASS . . . . . . 37.0 70.0 63 520.21 11.11 28.57 0 28.57 0/1
chr1 206513892 . C T . PASS . . . . . . 35.29 70.0 46 109.47 38.51 15.22 0 15.22 0/1
chr1 206513916 . G A . PASS . . . . . . 37.0 70.0 38 103.79 66.67 15.79 0 15.79 0/1
chr1 206516159 rs199928990 C T . PASS . . . . . . 37.0 61.14 16 211.76 12.50 43.75 0 43.75 0/1
chr1 206516261 rs201036189 C T . PASS . . . . . . 36.02 61.67 99 1000.00 14.84 49.49 0 49.49 0/1
chr1 206565975 . T G . PASS . . . . . . 37.0 70.0 24 183.53 0.00 29.17 0 29.17 0/1
chr1 206566000 rs367700107 C A . PASS . . . . . . 37.0 70.0 43 168.12 9.30 18.60 0 18.60 0/1
chr1 206566195 rs200978831 C T . PASS . . . . . . 36.39 62.75 763 1000.00 11.54 12.98 0 12.98 0/1
chr1 206566333 . AGT AAT . PASS . . . . . . 36.43 70.0 60 550.84 60.00 5.00 0 35.00 0/1
chr1 206566333 . AGT AAC . PASS . . . . . . 36.43 70.0 60 550.84 6.67 30.00 0 35.00 0/1
chr1 206566687 rs2255806 G A . PASS . . . . . . 37.0 55.5 11 101.50 0.00 36.36 0 36.36 0/1
chr1 206566904 rs2919105 T C . PASS 0.4970000 0.4942000 0.4851000 0.4950000 0.5000000 0.4944000 36.45 60.61 545 1000.00 0.56 64.04 0 64.22 0/1
chr1 206567084 rs75573336 C T . PASS . . . . . . 37.0 68.67 237 1000.00 6.51 17.72 0 17.72 0/1
chr1 206567100 rs2480377 C T . PASS . . . . . . 37.0 67.63 163 1000.00 6.11 28.22 0 28.22 0/1
chr1 206575128 rs201371659 T A . PASS . . . . . . 37.0 58.64 55 257.31 10.91 20.00 0 20.00 0/1
chr1 206575141 rs77896938 A C . PASS . . . . . . 36.33 64.22 40 582.84 5.00 45.00 0 45.00 0/1
chr1 206579798 rs200703951 T C . PASS . . . . . . 37.0 58.44 27 638.13 14.81 66.67 0 66.67 0/1
chr1 206579936 rs201644221 A G . PASS . . . . . . 37.0 46.06 85 1000.00 5.01 36.47 0 36.47 0/1
chr1 206580084 rs143665212 C G . PASS . . . . . . 37.0 52.76 29 586.18 0.00 58.62 0 58.62 0/1
chr1 206603535 rs2297539 G A . PASS 0.4175000 0.5634000 0.7024000 0.4334000 0.5542000 0.5250000 35.91 70.0 44 730.02 9.09 50.00 0 50.00 0/1
chr1 206623685 rs12725078 G T . PASS 0.4947000 0.5562000 0.3542000 0.7356000 0.7188000 0.5671000 37.0 70.0 11 139.12 25.45 45.45 0 45.45 0/1
chr1 206623866 rs11809494 C T . PASS 0.2829000 0.4006000 0.2708000 0.5268000 0.3937000 0.3674000 36.56 70.0 45 947.87 5.93 60.00 0 60.00 0/1
chr1 206623952 rs2483060 T C . PASS 0.6044000 0.6095000 0.3562000 0.8091000 0.7301000 0.6208000 37.0 70.0 11 59.73 18.18 27.27 0 27.27 0/1
chr1 206626607 rs11120575 G A . PASS 0.1989000 0.3948000 0.2708000 0.5338000 0.3947000 0.3460000 36.58 69.65 97 1000.00 5.68 58.76 0 58.76 0/1
chr1 206626779 rs2483059 A G . PASS 0.7859000 0.6297000 0.3552000 0.8151000 0.7290000 0.6723000 37.0 68.46 56 885.01 14.01 46.43 0 46.43 0/1
chr1 206626828 rs2483058 C G . PASS 0.3079000 0.4481000 0.2808000 0.6143000 0.3620000 0.3940000 37.0 66.67 15 168.85 6.67 40.00 0 40.00 0/1
chr1 206628485 rs72752969 C G . PASS 0.0030000 0.0202000 0.0000000 0.0537000 0.0020000 0.0147760 37.0 70.0 11 139.12 0.00 45.45 0 45.45 0/1
chr1 206634429 rs17018890 A G . PASS 0.2466000 0.1700000 0.0675000 0.2406000 0.3016000 0.2095000 36.02 70.0 91 1000.00 0.00 53.85 0 53.85 0/1
chr1 206647742 rs1539242 A G . PASS 1.0000000 1.0000000 1.0000000 0.9970000 1.0000000 0.9994000 36.63 70.0 162 1000.00 0.00 100.00 0 100.00 1/1
chr1 206647787 rs1539243 T C . PASS 0.8797000 0.9207000 0.9732000 0.8350000 0.8998000 0.8992000 36.66 70.0 140 1000.00 0.00 100.00 0 100.00 1/1
chr1 206648147 rs1953090 T G . PASS 0.2610000 0.1830000 0.1260000 0.2594000 0.2883000 0.2280000 36.74 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 206648378 rs1059704 G A . PASS 0.3570000 0.5879000 0.3532000 0.6809000 0.6391000 0.5084000 37.0 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 206650065 rs41296034 A G . PASS 0.0038000 0.0202000 0.0000000 0.0686000 0.0020000 0.0179710 36.82 70.0 142 1000.00 2.90 47.18 0 47.18 0/1
chr1 206651107 rs2297545 G A . PASS 0.1558000 0.4020000 0.6131000 0.2286000 0.2526000 0.3155000 37.0 70.0 49 571.91 3.85 36.73 0 36.73 0/1
chr1 206651725 rs17433909 C T . PASS 0.0038000 0.0144000 0.0000000 0.0596000 0.0061000 0.0161740 36.57 69.29 58 950.51 2.22 48.28 0 48.28 0/1
chr1 206667441 rs2184030 G A . PASS 0.2678000 0.4035000 0.3155000 0.4761000 0.5194000 0.3692000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 206680983 rs2095124 A C . PASS 0.9955000 0.9323000 1.0000000 0.8519000 0.9693000 0.9537000 36.58 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 206766857 . CGT C . PASS . . . . . . 34.83 70.0 17 144.41 19.61 35.29 0 35.29 0/1
chr1 206773659 rs6662929 A G . PASS 0.9992000 1.0000000 1.0000000 1.0000000 1.0000000 0.9998000 36.68 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 206810248 rs17013232 G T . PASS 0.0015000 0.0058000 0.0000000 0.0139000 0.0061000 0.0051917 36.65 70.0 57 1000.00 0.62 59.65 0 59.65 0/1
chr1 206902471 rs45514798 G A . PASS 0.0076000 0.1023000 0.0010000 0.1610000 0.0511000 0.0587000 36.34 69.78 91 1000.00 0.00 100.00 0 100.00 1/1
chr1 206944112 rs3024492 T A . PASS 0.0129000 0.1455000 0.0020000 0.2217000 0.0736000 0.0829000 37.0 70.0 11 97.35 0.00 36.36 0 36.36 0/1
chr1 206944233 rs1554286 A G . PASS 0.5688000 0.6931000 0.3393000 0.8151000 0.5818000 0.5919000 36.72 70.0 85 1000.00 0.00 100.00 0 100.00 1/1
chr1 206944645 rs1518111 T C . PASS 0.5658000 0.6715000 0.3244000 0.7793000 0.5573000 0.5731000 35.86 69.52 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 207009910 rs2243170 T C . PASS 0.6762000 0.8617000 0.7976000 0.9185000 0.9264000 0.8239000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 207014472 rs2243188 A C . PASS 0.5582000 0.6455000 0.4058000 0.7594000 0.7311000 0.6138000 37.0 70.0 40 511.30 5.00 40.00 0 40.00 0/1
chr1 207015957 rs2243191 T C . PASS 0.8185000 0.6729000 0.3363000 0.7724000 0.7209000 0.6729000 36.4 70.0 39 673.54 7.44 51.28 0 51.28 0/1
chr1 207072959 rs1150255 C T . PASS 0.2685000 0.4380000 0.2123000 0.4533000 0.2280000 0.3099000 35.67 70.0 14 289.31 7.94 64.29 0 64.29 0/1
chr1 207074905 rs1150258 T C . PASS 0.2905000 0.4380000 0.2123000 0.4533000 0.2280000 0.3157000 37.0 70.0 62 908.71 4.66 43.55 0 43.55 0/1
chr1 207078331 rs56268528 C T . PASS 0.0008000 0.0029000 0.0000000 0.0040000 0.0010000 0.0015974 37.0 70.0 32 539.54 18.75 50.00 0 50.00 0/1
chr1 207081654 rs1713231 A G . PASS 0.2065000 0.3098000 0.1349000 0.4533000 0.1963000 0.2540000 34.0 69.5 10 92.50 10.00 40.00 0 40.00 0/1
chr1 207087053 rs72758947 A G . PASS 0.0507000 0.1239000 0.1657000 0.1133000 0.1176000 0.1096000 36.0 70.0 17 405.59 7.84 70.59 0 70.59 0/1
chr1 207087435 rs167082 C T . PASS 0.1717000 0.3069000 0.1339000 0.4543000 0.1953000 0.2442000 35.96 70.0 48 759.76 5.07 47.92 0 47.92 0/1
chr1 207109116 rs2275531 C T . PASS 0.1944000 0.3271000 0.3284000 0.4563000 0.2147000 0.2963000 35.86 70.0 52 664.18 2.75 40.38 0 40.38 0/1
chr1 207109167 rs6695632 G A . PASS 0.1596000 0.3242000 0.3284000 0.4563000 0.2147000 0.2867000 37.0 70.0 29 423.25 1.06 44.83 0 44.83 0/1
chr1 207110363 rs748140 A G . PASS 0.1929000 0.3199000 0.3294000 0.4423000 0.2106000 0.2915000 35.67 70.0 15 286.30 17.78 60.00 0 60.00 0/1
chr1 207110936 rs291096 T C . PASS 0.9319000 0.5115000 0.4474000 0.4682000 0.2556000 0.5509000 35.91 70.0 63 672.83 6.20 34.92 0 34.92 0/1
chr1 207111257 rs291095 G T . PASS 0.9849000 0.6282000 0.5556000 0.6302000 0.6452000 0.7115000 37.0 70.0 10 100.36 0.00 40.00 0 40.00 0/1
chr1 207113755 rs2007272 G C . PASS 0.1861000 0.3199000 0.3294000 0.4423000 0.2106000 0.2897000 36.2 70.0 24 505.69 11.67 62.50 0 62.50 0/1
chr1 207135546 rs1572808 G A . PASS 0.6596000 0.3487000 0.0645000 0.3022000 0.1687000 0.3291000 37.0 69.05 48 700.23 2.38 43.75 0 43.75 0/1
chr1 207143422 rs1856746 A G . PASS 0.9319000 0.5101000 0.4425000 0.4702000 0.2556000 0.5501000 36.72 69.53 98 1000.00 0.85 43.88 0 43.88 0/1
chr1 207195779 rs2842726 A G . PASS 0.9985000 0.9914000 1.0000000 0.9891000 0.9949000 0.9952000 36.68 70.0 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 207235954 rs2075863 G A . PASS 0.2027000 0.2522000 0.1657000 0.4155000 0.2648000 0.2570000 36.08 70.0 28 414.25 7.69 46.43 0 46.43 0/1
chr1 207237233 . G GGGGTGTGTGTGTGTGTGT . PASS . . . . . . 36.2 70.0 24 204.87 0.00 25.00 0 33.33 0/1
chr1 207238419 rs72741390 C T . PASS 0.0257000 0.1542000 0.0079000 0.2753000 0.1319000 0.1108000 35.97 70.0 71 1000.00 4.35 49.30 0 49.30 0/1
chr1 207243851 rs923109 A G . PASS 0.9584000 0.8271000 0.9921000 0.7306000 0.8354000 0.8772000 35.8 70.0 40 658.52 10.00 50.00 0 50.00 0/1
chr1 207269919 rs8942 C T . PASS 0.8850000 0.2867000 0.1617000 0.1769000 0.2474000 0.3898000 36.6 70.0 77 976.87 5.37 38.96 0 38.96 0/1
chr1 207286381 rs55867570 C A . PASS 0.0030000 0.0994000 0.0030000 0.0249000 0.0746000 0.0347000 36.62 70.0 57 1000.00 6.03 56.14 0 56.14 0/1
chr1 207288897 rs12031629 T C . PASS 0.2398000 0.5187000 0.5714000 0.5606000 0.4755000 0.4557000 35.29 70.0 26 450.04 7.69 53.85 0 53.85 0/1
chr1 207297680 rs1126618 T C . PASS 0.9198000 0.8646000 0.7639000 0.8290000 0.8957000 0.8578000 36.57 69.64 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 207300070 rs45574833 G A . PASS 0.0000000 0.0029000 0.0010000 0.0109000 0.0010000 0.0029952 37.0 70.0 48 1000.00 1.39 75.00 0 75.00 0/1
chr1 207300259 rs2491393 A G . PASS 0.6006000 0.4308000 0.2679000 0.3728000 0.3845000 0.4221000 35.8 70.0 31 279.91 38.06 32.26 0 32.26 0/1
chr1 207304900 rs4844573 T C . PASS 0.8374000 0.4625000 0.2679000 0.3767000 0.3845000 0.4898000 36.12 70.0 75 1000.00 7.35 54.67 0 54.67 0/1
chr1 207500293 rs4844591 C T . PASS 0.6959000 0.7032000 0.4107000 0.7445000 0.5532000 0.6214000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 207504669 rs2184476 G A . PASS 0.6967000 0.7032000 0.4107000 0.7435000 0.5532000 0.6214000 36.57 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 207510596 rs10746463 G A . PASS 0.6967000 0.7032000 0.4107000 0.7445000 0.5532000 0.6216000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 207527285 rs11120753 G A . PASS 0.3608000 0.1888000 0.0595000 0.2704000 0.1687000 0.2206000 34.6 70.0 14 122.24 48.57 35.71 0 35.71 0/1
chr1 207532861 . C CTT . PASS . . . . . . 35.67 70.0 29 700.82 11.03 34.48 0 72.41 0/1
chr1 207548626 rs6664477 C T . PASS 0.3759000 0.4582000 0.4177000 0.5050000 0.5286000 0.4515000 37.0 70.0 21 238.49 29.76 38.10 0 38.10 0/1
chr1 207653364 rs17618 A G . PASS 0.0643000 0.0562000 0.0020000 0.0716000 0.0491000 0.0491000 37.0 70.0 98 1000.00 8.33 48.98 0 48.98 0/1
chr1 207653395 rs17617 C A . PASS 0.9962000 0.9121000 1.0000000 0.8370000 0.9427000 0.9429000 36.25 70.0 103 1000.00 1.54 46.60 0 46.60 0/1
chr1 207679307 rs4844600 A G . PASS 0.9523000 0.9078000 0.6488000 0.8111000 0.9202000 0.8504000 36.8 69.26 123 1000.00 0.77 49.59 0 49.59 0/1
chr1 207700348 rs146366639 G A . PASS 0.9902000 0.9006000 0.6210000 0.8052000 0.9049000 0.8496000 37.0 70.0 15 131.23 0.00 33.33 0 33.33 0/1
chr1 207760771 . TAC TGT . PASS . . . . . . 37.0 70.0 82 1000.00 8.67 43.90 0 43.90 0/1
chr1 207782707 rs17259045 A G . PASS 0.0083000 0.1585000 0.0020000 0.0954000 0.0685000 0.0571000 37.0 70.0 55 1000.00 21.21 54.55 0 54.55 0/1
chr1 207782916 rs4844609 A T . PASS 1.0000000 0.9942000 1.0000000 0.9801000 0.9990000 0.9950000 36.56 70.0 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 207784968 rs3818361 A G . PASS 0.5484000 0.8919000 0.6885000 0.8161000 0.9243000 0.7514000 37.0 70.0 29 465.03 2.46 48.28 0 48.28 0/1
chr1 207795320 rs2296160 A G . PASS 0.8162000 0.9207000 0.6885000 0.8221000 0.9284000 0.8281000 36.48 70.0 53 756.72 5.09 43.40 0 43.40 0/1
chr1 207842900 rs4844388 G A . PASS 0.0446000 0.4524000 0.2738000 0.2753000 0.3395000 0.2512000 37.0 69.09 49 738.99 1.11 44.90 0 44.90 0/1
chr1 207888626 rs6677310 C T . PASS 0.1142000 0.3055000 0.0079000 0.2714000 0.1534000 0.1585000 37.0 69.12 34 199.36 4.41 23.53 0 23.53 0/1
chr1 207888704 rs2796255 T C . PASS 0.1142000 0.3069000 0.0079000 0.2714000 0.1534000 0.1587000 36.56 63.07 70 872.62 0.85 38.57 0 38.57 0/1
chr1 207888760 rs2796261 C T . PASS 0.2557000 0.5259000 0.1171000 0.4394000 0.2628000 0.3035000 36.76 66.27 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 207890866 rs2796257 T C . PASS 0.1362000 0.5115000 0.1171000 0.4344000 0.2628000 0.2690000 36.51 68.34 97 1000.00 0.00 100.00 0 100.00 1/1
chr1 207941191 rs2724374 G T . PASS 0.7844000 0.7190000 0.9901000 0.7942000 0.8579000 0.8331000 36.51 69.73 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 208062260 rs2745952 T C . PASS 0.7368000 0.6671000 0.9246000 0.6799000 0.7955000 0.7650000 37.0 70.0 18 716.39 0.00 100.00 0 100.00 1/1
chr1 208072626 rs12029239 A C . PASS 0.3873000 0.2536000 0.3889000 0.1243000 0.2771000 0.2947000 37.0 70.0 35 317.50 4.16 31.43 0 31.43 0/1
chr1 208206946 rs6702082 C G . PASS 0.0408000 0.2176000 0.0010000 0.4254000 0.1104000 0.1482000 35.96 70.0 23 855.29 1.98 95.65 0 100.00 1/1
chr1 208207839 rs3736963 G A . PASS 0.5401000 0.4539000 0.2579000 0.6203000 0.3108000 0.4427000 35.89 70.0 76 1000.00 0.00 100.00 0 100.00 1/1
chr1 208211887 rs905100 T C . PASS 0.7337000 0.8646000 0.8859000 0.9791000 0.9632000 0.8766000 36.4 70.0 20 787.91 0.00 100.00 0 100.00 1/1
chr1 208213125 rs1751580 A G . PASS 0.8336000 0.9885000 1.0000000 0.9990000 1.0000000 0.9543000 36.59 69.83 117 1000.00 0.00 100.00 0 100.00 1/1
chr1 208219164 rs1536471 A C . PASS 0.8283000 0.8487000 0.6210000 0.8360000 0.6452000 0.7552000 36.33 70.0 18 700.22 0.00 100.00 0 100.00 1/1
chr1 208239176 rs6656034 A G . PASS 0.6097000 0.5000000 0.5456000 0.6769000 0.6319000 0.5994000 36.69 70.0 117 1000.00 0.00 100.00 0 100.00 1/1
chr1 208252489 rs2274445 T C . PASS 0.4002000 0.3444000 0.3085000 0.5527000 0.3119000 0.3874000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 208255877 rs6540453 T C . PASS 0.4297000 0.4611000 0.6558000 0.6799000 0.6043000 0.5639000 35.8 70.0 20 775.90 0.00 100.00 0 100.00 1/1
chr1 208257629 rs716461 G A . PASS 0.1135000 0.3660000 0.1935000 0.2624000 0.2679000 0.2246000 37.0 70.0 27 262.19 0.00 33.33 0 33.33 0/1
chr1 208270244 rs3818517 A C . PASS 0.2315000 0.4265000 0.1806000 0.3817000 0.3487000 0.3013000 37.0 70.0 62 1000.00 3.23 50.00 0 50.00 0/1
chr1 208276399 rs10654695 C CCTCT . PASS 0.7995000 0.9813000 1.0000000 1.0000000 0.9959000 0.9437000 36.0 70.0 10 350.63 0.00 100.00 0 100.00 1/1
chr1 208418572 rs1615146 T C . PASS 0.6573000 0.5303000 0.5149000 0.5060000 0.3967000 0.5298000 36.76 70.0 94 1000.00 12.27 54.26 0 54.26 0/1
chr1 208440810 . C CCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG . PASS . . . . . . 36.67 69.9 39 1000.00 9.94 82.05 0 100.00 0/1
chr1 208810027 rs10779491 A G . PASS 0.3026000 0.3487000 0.4435000 0.4513000 0.3344000 0.3734000 36.27 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 208810167 rs10863721 C T . PASS 0.1528000 0.3170000 0.3800000 0.4284000 0.3497000 0.3151000 35.93 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 209209165 rs11342968 CA C . PASS 0.3268000 0.3401000 0.3214000 0.4990000 0.5573000 0.4071000 35.74 70.0 66 1000.00 0.00 57.58 0 57.58 0/1
chr1 209346731 rs10863758 G A . PASS 0.3971000 0.5447000 0.7837000 0.6372000 0.5266000 0.5689000 36.31 70.0 36 1000.00 1.90 97.22 0 97.22 1/1
chr1 209406173 rs2800918 A G . PASS 0.9312000 0.9957000 1.0000000 1.0000000 1.0000000 0.9812000 35.8 69.8 10 370.22 0.00 100.00 0 100.00 1/1
chr1 209579702 rs7526420 G A . PASS 0.5242000 0.4741000 0.3998000 0.5368000 0.6575000 0.5208000 36.1 70.0 74 1000.00 2.30 54.05 0 54.05 0/1
chr1 209605636 rs74820836,rs3842530 TAGCAGCAGCAGC T . PASS . . . . . . 35.75 70.0 232 1000.00 0.47 99.57 0 99.57 1/1
chr1 209784927 rs2076230 G T . PASS 0.4735000 0.2867000 0.1071000 0.3429000 0.3292000 0.3195000 37.0 70.0 45 997.50 7.62 62.22 0 62.22 0/1
chr1 209785206 rs11119315 G A . PASS 0.3064000 0.1859000 0.1062000 0.1819000 0.0951000 0.1831000 36.77 70.0 91 1000.00 9.58 58.24 0 58.24 0/1
chr1 209786078 rs2272880 G A . PASS 0.9123000 0.7767000 0.7431000 0.6362000 0.6789000 0.7584000 35.59 70.0 17 650.59 0.00 100.00 0 100.00 1/1
chr1 209788514 rs2566 G A . PASS 0.2405000 0.4121000 0.3601000 0.2724000 0.2423000 0.2951000 37.0 70.0 13 137.25 0.00 38.46 0 38.46 0/1
chr1 209788703 rs1049607 T C . PASS 0.6694000 0.3689000 0.3810000 0.3648000 0.4376000 0.4633000 36.46 70.0 134 1000.00 4.48 50.00 0 50.00 0/1
chr1 209792015 rs5780528 A AC . PASS 0.9977000 0.9856000 1.0000000 0.9394000 0.9918000 0.9836000 36.8 70.0 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 209796267 rs3737913 G A . PASS 0.2405000 0.4121000 0.3661000 0.2724000 0.2444000 0.2967000 37.0 70.0 31 459.00 5.99 45.16 0 45.16 0/1
chr1 209799253 rs2179402 A G . PASS 0.7837000 0.7075000 0.8304000 0.7326000 0.7464000 0.7650000 36.62 70.0 116 1000.00 4.76 54.31 0 54.31 0/1
chr1 209800976 rs2072938 C T . PASS 0.0356000 0.1354000 0.0585000 0.1431000 0.0900000 0.0863000 37.0 70.0 28 593.36 8.40 60.71 0 60.71 0/1
chr1 209804095 rs4844863 G A . PASS 0.8275000 0.7752000 0.8234000 0.8668000 0.8067000 0.8233000 35.96 70.0 59 726.64 18.13 38.98 0 38.98 0/1
chr1 209805895 rs2072940 C G . PASS 0.0613000 0.1427000 0.0645000 0.1412000 0.0930000 0.0954000 36.61 70.0 62 1000.00 3.23 50.00 0 50.00 0/1
chr1 209811886 rs2076356 T G . PASS 0.3517000 0.4582000 0.2847000 0.6412000 0.4611000 0.4325000 36.23 70.0 67 1000.00 8.18 46.27 0 46.27 0/1
chr1 209833313 rs7542062 T C . PASS 0.8207000 0.2968000 0.1131000 0.2475000 0.2669000 0.3824000 35.91 70.0 31 321.68 19.94 35.48 0 35.48 0/1
chr1 209833347 rs11437405 T TC . PASS 0.3132000 0.5331000 0.5010000 0.3996000 0.4673000 0.4289000 37.0 70.0 55 955.98 1.69 50.91 0 50.91 0/1
chr1 209849002 rs3817870 T C . PASS 0.4660000 0.6182000 0.5387000 0.7356000 0.7260000 0.6066000 37.0 70.0 26 390.52 23.08 46.15 0 46.15 0/1
chr1 209849399 rs3830766 AG A . PASS 0.4349000 0.6167000 0.5377000 0.7346000 0.7260000 0.5978000 35.15 70.0 30 666.05 10.00 66.67 0 66.67 0/1
chr1 209849406 rs1473683 T G . PASS 0.9985000 0.8948000 0.7381000 0.9871000 0.9468000 0.9193000 37.0 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 209950681 rs649275 T C . PASS 0.5923000 0.6729000 0.6329000 0.6243000 0.5706000 0.6138000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 209950760 rs669694 C G . PASS 0.8828000 0.7781000 0.8135000 0.7674000 0.7863000 0.8123000 36.67 69.73 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 209965587 rs2235375 G C . PASS 0.2474000 0.4798000 0.5833000 0.3608000 0.4274000 0.4052000 36.85 70.0 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 209968684 rs2013162 C A . PASS 0.2428000 0.4769000 0.5843000 0.3608000 0.4274000 0.4038000 36.26 69.79 97 1000.00 0.00 100.00 0 100.00 1/1
chr1 209969902 rs7552506 G C . PASS 0.2413000 0.2968000 0.1548000 0.3469000 0.3344000 0.2710000 36.37 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 210001543 rs12404886 A T . PASS 0.0545000 0.1988000 0.0813000 0.2058000 0.1227000 0.1236000 37.0 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 210003402 rs599649 T C . PASS 0.6097000 0.5403000 0.3859000 0.7286000 0.6687000 0.5905000 37.0 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 210004199 rs585627 C G . PASS 0.6074000 0.5418000 0.3859000 0.7286000 0.6687000 0.5901000 37.0 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 210006438 rs655713 C T . PASS 0.6074000 0.5418000 0.3859000 0.7286000 0.6687000 0.5901000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 210006603 rs656566 C T . PASS 0.6082000 0.5418000 0.3859000 0.7286000 0.6687000 0.5903000 35.69 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 210008367 rs685248 C G . PASS 0.6082000 0.5418000 0.3859000 0.7286000 0.6687000 0.5903000 35.74 70.0 19 729.98 0.00 100.00 0 100.00 1/1
chr1 210008374 rs41274838 C T . PASS 0.0514000 0.1988000 0.0823000 0.2058000 0.1227000 0.1230000 36.43 70.0 21 829.68 0.00 100.00 0 100.00 1/1
chr1 210015568 rs10570454,rs35511439 GCT G . PASS 0.8200000 0.7406000 0.8016000 0.7515000 0.7597000 0.7798000 36.76 70.0 25 867.90 0.00 100.00 0 100.00 1/1
chr1 210205999 rs34354853 T TA . PASS 0.4841000 0.5115000 0.5575000 0.3867000 0.4172000 0.4700000 36.0 70.0 20 772.32 1.11 90.00 0 100.00 1/1
chr1 210206084 rs142719944 C CTGT . PASS 0.8298000 0.5360000 0.5714000 0.4195000 0.4530000 0.5811000 35.4 70.0 11 272.75 16.16 81.82 0 81.82 0/1
chr1 210267893 rs2307890,rs144713062 TGAA T . PASS 0.0098000 0.0677000 0.0655000 0.1421000 0.1329000 0.0797000 34.31 70.0 33 489.96 28.03 48.48 0 48.48 0/1
chr1 210273886 rs2494187 A T . PASS 0.0083000 0.0677000 0.0486000 0.1392000 0.1258000 0.0739000 37.0 70.0 10 225.68 8.57 70.00 0 70.00 0/1
chr1 210334081 rs17188183 T C . PASS 0.0121000 0.0677000 0.0486000 0.1402000 0.1268000 0.0753000 37.0 70.0 31 667.86 14.26 61.29 0 61.29 0/1
chr1 210439986 . C CAA . PASS . . . . . . 37.0 70.0 14 279.73 21.43 28.57 0 64.29 0/1
chr1 210536278 rs11119469 C A . PASS 0.0318000 0.0908000 0.0020000 0.1402000 0.1115000 0.0713000 36.29 70.0 32 565.15 12.87 53.12 0 53.12 0/1
chr1 210536387 rs11119470 T C . PASS 0.0318000 0.0908000 0.0020000 0.1402000 0.1217000 0.0733000 37.0 70.0 11 59.73 18.18 27.27 0 27.27 0/1
chr1 210554987 rs910027 A G . PASS 0.3033000 0.5259000 0.4603000 0.3976000 0.4622000 0.4157000 37.0 70.0 67 684.83 1.36 32.84 0 32.84 0/1
chr1 210577831 rs34772809 C T . PASS 0.0348000 0.1110000 0.0020000 0.1789000 0.1033000 0.0811000 35.55 70.0 76 1000.00 0.16 43.42 0 43.42 0/1
chr1 210577873 rs2066721 G C . PASS 0.8517000 0.8444000 0.6280000 0.7634000 0.7086000 0.7600000 36.64 70.0 101 1000.00 0.00 100.00 0 100.00 1/1
chr1 210577901 rs34228541 T C . PASS 0.0340000 0.1110000 0.0020000 0.1789000 0.1033000 0.0809000 36.49 70.0 96 1000.00 4.30 48.96 0 48.96 0/1
chr1 210591742 rs3215542 TG T . PASS 0.4592000 0.6383000 0.7163000 0.5984000 0.7055000 0.6118000 36.19 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 210761462 rs4297293 G C . PASS 0.8207000 0.9841000 1.0000000 0.9970000 1.0000000 0.9499000 36.64 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 210857261 rs72751436 C T . PASS 0.0000000 0.0029000 0.0000000 0.0010000 0.0000000 0.0005990 37.0 69.62 110 1000.00 3.43 47.27 0 47.27 0/1
chr1 211032696 rs4951669 C G . PASS 0.8472000 0.5965000 0.3849000 0.6421000 0.4519000 0.6010000 35.91 70.0 26 332.59 11.89 42.31 0 42.31 0/1
chr1 211032756 rs61848964 T A . PASS 0.0015000 0.0072000 0.0000000 0.0239000 0.0041000 0.0069888 36.6 69.23 61 1000.00 1.42 49.18 0 49.18 0/1
chr1 211033278 rs4951670 T G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.52 69.78 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 211033317 rs4951484 G T . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.66 69.82 71 1000.00 0.00 100.00 0 100.00 1/1
chr1 211033368 rs4951671 G C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.48 69.97 69 1000.00 0.00 100.00 0 100.00 1/1
chr1 211033413 rs4951672 T C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.11 69.48 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 211033442 rs4951485 A C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 35.96 69.39 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 211033446 rs4951673 G T . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.5 69.42 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 211033457 rs55659105 TG T . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.1 69.32 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 211034143 rs4951674 T G . PASS 0.8782000 0.7104000 0.8393000 0.8469000 0.7710000 0.8199000 37.0 69.77 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 211192707 rs11119658 G A . PASS 0.6271000 0.3213000 0.0873000 0.3718000 0.2894000 0.3588000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 211280519 rs72741104 G A . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0031000 0.0007987 37.0 70.0 35 446.96 2.86 40.00 0 40.00 0/1
chr1 211447625 rs11580084 G A . PASS 0.1475000 0.5764000 0.6171000 0.5994000 0.4744000 0.4561000 37.0 70.0 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 211452529 rs10708960 TA T . PASS . . . . . . 35.33 70.0 16 516.36 4.17 93.75 0 93.75 1/1
chr1 211452678 rs3767377 G A . PASS 0.1475000 0.5764000 0.6200000 0.5994000 0.4744000 0.4567000 36.64 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 211452728 rs3767378 G A . PASS 0.1475000 0.5764000 0.6200000 0.5994000 0.4744000 0.4567000 37.0 70.0 16 632.84 0.00 100.00 0 100.00 1/1
chr1 211590892 rs1877476 A G . PASS 0.6989000 0.9582000 1.0000000 0.9682000 0.9867000 0.9058000 36.54 69.94 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 211591135 rs1707247 T C . PASS 0.8313000 0.9654000 1.0000000 0.9672000 0.9867000 0.9415000 36.85 69.76 78 1000.00 0.00 100.00 0 100.00 1/1
chr1 211682187 rs12409763 T C . PASS 0.4206000 0.4986000 0.6091000 0.4771000 0.4673000 0.4898000 36.5 70.0 144 1000.00 8.33 50.00 0 50.00 0/1
chr1 211834039 rs1822568 G C . PASS 0.7973000 0.6830000 0.5377000 0.7575000 0.6789000 0.6981000 37.0 69.5 11 97.35 9.09 36.36 0 36.36 0/1
chr1 211836752 rs56354171 G A . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 36.2 70.0 36 473.72 2.22 41.67 0 41.67 0/1
chr1 211846876 rs701929 A G . PASS 0.5454000 0.6671000 0.7252000 0.4732000 0.6431000 0.6030000 36.11 69.81 62 884.69 15.29 43.55 0 43.55 0/1
chr1 212030216 rs28778433 C G . PASS 0.9864000 0.9928000 1.0000000 0.9583000 0.9652000 0.9802000 35.88 68.86 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 212142054 rs11322485 GA G . PASS 0.3132000 0.3934000 0.4028000 0.4314000 0.4141000 0.3858000 34.97 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 212209367 rs3215984 T TC . PASS 0.0461000 0.2709000 0.2589000 0.4264000 0.3691000 0.2596000 37.0 70.0 22 595.81 3.21 77.27 0 77.27 0/1
chr1 212215819 rs3010023 G A . PASS 0.4705000 0.4856000 0.4018000 0.6054000 0.5429000 0.5000000 37.0 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 212217971 rs35704923 C CTT . PASS 0.5045000 0.5331000 0.4246000 0.6690000 0.6237000 0.5487000 34.67 70.0 20 722.28 0.00 100.00 0 100.00 1/1
chr1 212220847 rs2970592 G A . PASS 0.4682000 0.4856000 0.4018000 0.6054000 0.5409000 0.4990000 37.0 69.17 24 967.01 0.00 100.00 0 100.00 1/1
chr1 212224946 rs113106720 G T . PASS 0.0439000 0.2709000 0.2599000 0.4225000 0.3691000 0.2584000 37.0 50.67 14 171.86 4.76 42.86 0 42.86 0/1
chr1 212236157 rs4951436 G T . PASS 0.8578000 0.9870000 0.9980000 0.9374000 0.9550000 0.9389000 37.0 70.0 24 962.86 0.00 100.00 0 100.00 1/1
chr1 212241714 rs71854563,rs35528691 T TAA . PASS . . . . . . 37.0 70.0 24 309.17 14.29 29.17 0 45.83 0/1
chr1 212273606 rs35137676 G A . PASS 0.0015000 0.0245000 0.0000000 0.0308000 0.0020000 0.0103830 36.72 70.0 72 1000.00 1.36 59.72 0 59.72 0/1
chr1 212273639 rs3135474 C T . PASS 0.9115000 0.9957000 1.0000000 0.9592000 0.9571000 0.9595000 36.6 70.0 89 1000.00 0.00 100.00 0 100.00 1/1
chr1 212274413 rs6540718 A C . PASS 1.0000000 0.9971000 1.0000000 0.9891000 0.9959000 0.9966000 36.8 69.67 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 212530192 rs792439 T C . PASS 0.9970000 0.9899000 1.0000000 0.9791000 0.9990000 0.9934000 36.0 70.0 12 453.75 0.00 100.00 0 100.00 1/1
chr1 212539342 rs3767864 C T . PASS 0.4213000 0.5677000 0.3800000 0.5676000 0.6370000 0.5048000 37.0 70.0 76 1000.00 3.03 43.42 0 43.42 0/1
chr1 212551139 rs71573837,rs34228270 G GCA . PASS 0.0303000 0.1931000 0.0972000 0.2008000 0.3211000 0.1573000 37.0 70.0 16 141.39 8.33 37.50 0 37.50 0/1
chr1 212560327 rs792449 A G . PASS 0.9970000 0.9899000 1.0000000 0.9811000 0.9990000 0.9938000 36.37 70.0 95 1000.00 0.00 100.00 0 100.00 1/1
chr1 212617860 rs145109984,rs57220444,rs71907583 CGTGT C . PASS . . . . . . 30.17 70.0 23 307.93 52.17 52.17 0 52.17 0/1
chr1 212798977 rs3122712 A G . PASS 0.4554000 0.1960000 0.0804000 0.2634000 0.1871000 0.2530000 36.5 70.0 56 789.47 11.90 42.86 0 42.86 0/1
chr1 212799870 rs3122713 A G . PASS 0.7731000 0.7550000 0.6796000 0.8410000 0.8691000 0.7841000 36.31 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 212799949 rs3795842 C T . PASS 0.3359000 0.3156000 0.4514000 0.6451000 0.6769000 0.4850000 36.03 70.0 68 1000.00 0.72 54.41 0 54.41 0/1
chr1 212900434 rs3835160 C CG . PASS . . . . . . 35.74 70.0 55 556.01 3.44 34.55 0 34.55 0/1
chr1 212900487 rs2244935 A G . PASS 0.9070000 0.9611000 0.8938000 0.9155000 0.8885000 0.9099000 36.49 70.0 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 212911836 rs15702 T C . PASS 0.6513000 0.4438000 0.5308000 0.6859000 0.6626000 0.6074000 36.48 70.0 54 753.70 1.77 42.59 0 42.59 0/1
chr1 212925904 rs11308975 TA T . PASS 0.5537000 0.4352000 0.5308000 0.6839000 0.6626000 0.5801000 37.0 70.0 30 285.37 13.33 33.33 0 33.33 0/1
chr1 212960866 rs3738800 C T . PASS 0.0242000 0.4769000 0.3631000 0.1710000 0.2086000 0.2206000 35.5 70.0 24 217.45 33.33 33.33 0 33.33 0/1
chr1 213009469 rs10864004 A G . PASS 0.7943000 0.4640000 0.5407000 0.7366000 0.6646000 0.6605000 36.4 70.0 59 613.35 4.75 33.90 0 33.90 0/1
chr1 213037310 rs3768548 T C . PASS 0.1732000 0.4942000 0.4484000 0.1909000 0.2260000 0.2869000 37.0 70.0 16 337.07 0.00 62.50 0 62.50 0/1
chr1 213046236 rs1890932 G A . PASS 0.1732000 0.4942000 0.4415000 0.1909000 0.2270000 0.2857000 33.4 70.0 17 298.04 4.71 58.82 0 58.82 0/1
chr1 213056819 rs2644547 A G . PASS 0.9856000 1.0000000 1.0000000 1.0000000 1.0000000 0.9962000 36.38 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 213061362 rs2291772 T A . PASS 0.1732000 0.4942000 0.4415000 0.1869000 0.2260000 0.2847000 36.29 70.0 42 535.05 1.12 40.48 0 40.48 0/1
chr1 213062017 rs112024320 T TTTG . PASS . . . . . . 35.74 70.0 24 586.54 5.39 70.83 0 75.00 0/1
chr1 213068404 rs17019870 T C . PASS 0.1702000 0.4914000 0.4454000 0.1879000 0.2249000 0.2843000 37.0 70.0 23 316.00 35.65 43.48 0 43.48 0/1
chr1 213068436 rs17019873 A G . PASS 0.1702000 0.4914000 0.4454000 0.1879000 0.2249000 0.2843000 37.0 70.0 21 322.03 25.71 47.62 0 47.62 0/1
chr1 213068456 rs41258314 T A . PASS 0.0008000 0.0029000 0.0000000 0.0109000 0.0020000 0.0031949 37.0 70.0 17 246.37 17.65 47.06 0 47.06 0/1
chr1 213068542 rs146462077 C CTGAT . PASS 0.1710000 0.4914000 0.4454000 0.1879000 0.2270000 0.2849000 36.7 70.0 18 225.93 11.11 44.44 0 44.44 0/1
chr1 213124871 rs3123305 G A . PASS 0.0605000 0.2378000 0.4028000 0.4384000 0.4407000 0.3041000 35.71 70.0 42 974.66 7.14 66.67 0 66.67 0/1
chr1 213139748 rs3738805 T G . PASS 0.6536000 0.5058000 0.6171000 0.5895000 0.6350000 0.6092000 37.0 70.0 17 670.47 0.00 100.00 0 100.00 1/1
chr1 213178340 rs11120076 G A . PASS 0.0439000 0.3732000 0.5258000 0.6461000 0.5890000 0.4139000 36.25 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 213180440 . AG AGA . PASS . . . . . . . . 37 100.79 12.29 59.46 1 86.49 0/1
chr1 213180441 rs116147385 G A . PASS . . . . . . 35.14 70.0 40 100.79 135.00 15.00 1 17.50 0/1
chr1 213210301 rs11120080 T G . PASS 0.6331000 0.4265000 0.5347000 0.6869000 0.6401000 0.5968000 37.0 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 213224719 rs4951476 T C . PASS 0.9002000 0.5735000 0.6161000 0.7197000 0.6973000 0.7218000 36.4 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 213405414 rs11271079 GGCAACTGAGGAT G . PASS 0.8835000 0.5706000 0.6171000 0.7197000 0.6973000 0.7173000 37.0 70.0 12 456.20 0.00 100.00 0 100.00 1/1
chr1 213590504 rs12037929 G A . PASS 0.3374000 0.5778000 0.5446000 0.5179000 0.3947000 0.4599000 36.06 70.0 115 1000.00 0.00 100.00 0 100.00 1/1
chr1 214156165 rs9970073 G A . PASS 0.6793000 0.3963000 0.3968000 0.4076000 0.3753000 0.4692000 36.06 69.83 115 1000.00 0.00 100.00 0 100.00 1/1
chr1 214478459 rs6540819 G A . PASS 0.7110000 0.4236000 0.6200000 0.4692000 0.5665000 0.5761000 37.0 70.0 10 104.51 30.00 40.00 0 40.00 0/1
chr1 214492286 rs1134647 G A . PASS 0.9962000 0.7550000 0.6230000 0.9076000 0.7955000 0.8307000 36.61 70.0 92 1000.00 0.00 100.00 0 100.00 1/1
chr1 214503489 rs2291830 T G . PASS 0.5189000 0.4553000 0.6200000 0.5895000 0.6074000 0.5619000 36.6 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 214505640 rs35345210 A G . PASS 0.0068000 0.1182000 0.0853000 0.1511000 0.1033000 0.0859000 36.2 70.0 30 491.78 0.00 50.00 0 50.00 0/1
chr1 214538109 . AG A . PASS . . . . . . 29.0 70.0 12 56.90 33.33 33.33 1 33.33 0/1
chr1 214538109 . AGTGT AGTGA . PASS . . . . . . 37.0 70.0 12 56.90 33.33 8.33 1 41.67 0/1
chr1 214538109 rs71732304 AGTGT A . PASS . . . . . . 29.0 70.0 12 56.90 33.33 33.33 1 41.67 0/1
chr1 214538110 . GT G . PASS . . . . . . 29.0 70.0 12 56.91 33.33 33.33 1 33.33 0/1
chr1 214538111 . TG T . PASS . . . . . . 29.0 70.0 11 59.91 36.36 36.36 1 36.36 0/1
chr1 214538112 . GT G . PASS . . . . . . 30.6 70.0 11 62.92 36.36 36.36 1 45.45 0/1
chr1 214576354 rs55788513 T C . PASS 0.0023000 0.0346000 0.0000000 0.0676000 0.0307000 0.0250000 37.0 70.0 12 98.49 33.33 33.33 0 33.33 0/1
chr1 214637882 rs7528315 A G . PASS 0.9206000 0.8141000 0.7847000 0.7992000 0.7771000 0.8261000 35.67 70.0 18 692.36 0.00 100.00 0 100.00 1/1
chr1 214638172 rs10864100 C T . PASS 0.9206000 0.8141000 0.7847000 0.7992000 0.7771000 0.8261000 36.08 69.62 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 214656066 rs77576710 C T . PASS . . . . . . 37.0 65.25 14 92.47 42.86 28.57 0 28.57 0/1
chr1 214656070 rs12740343 T C . PASS . . . . . . 35.67 65.0 13 292.33 20.51 69.23 0 69.23 0/1
chr1 214656164 rs58782956 A G . PASS . . . . . . 36.4 66.25 56 583.62 64.29 33.93 0 35.71 0/1
chr1 214656254 rs74797197 A G . PASS . . . . . . 36.25 63.0 47 482.38 5.85 34.04 0 34.04 0/1
chr1 214656259 rs77987889 G A . PASS . . . . . . 35.5 63.0 47 470.37 1.60 34.04 0 34.04 0/1
chr1 214656266 . CCA CTG . PASS . . . . . . 37.0 63.0 49 500.41 2.55 32.65 0 32.65 0/1
chr1 214656277 rs79052802 C G . PASS . . . . . . 37.0 63.56 46 576.79 4.83 39.13 0 39.13 0/1
chr1 214656298 rs55872127 C T . PASS . . . . . . 36.43 66.29 46 694.24 14.29 45.65 0 45.65 0/1
chr1 214656333 rs75490133 G A . PASS . . . . . . 35.18 69.27 58 1000.00 6.48 56.90 0 56.90 0/1
chr1 214656359 rs57780679 T TC . PASS 0.9970000 0.9438000 1.0000000 0.9324000 0.9928000 0.9764000 36.7 69.43 78 1000.00 0.00 100.00 0 100.00 1/1
chr1 214656362 rs79153607 T C . PASS . . . . . . 37.0 69.45 78 1000.00 13.64 56.41 0 56.41 0/1
chr1 214656378 rs75388246 C T . PASS . . . . . . 36.78 69.54 89 1000.00 12.23 60.67 0 60.67 0/1
chr1 214656413 rs74407488 T C . PASS . . . . . . 36.68 69.7 110 1000.00 9.90 69.09 0 69.09 0/1
chr1 214656439 rs112508752,rs3840048 CTAA C . PASS 0.0227000 0.0648000 0.0119000 0.1461000 0.1084000 0.0679000 36.38 68.17 114 814.19 5.08 25.44 0 25.44 0/1
chr1 214656464 rs75275552 G T . PASS . . . . . . 36.68 68.97 119 1000.00 8.90 63.03 0 63.03 0/1
chr1 214656466 rs61745824 C G . PASS 0.3994000 0.3689000 0.3095000 0.3121000 0.3599000 0.3518000 36.01 68.95 118 1000.00 11.54 61.86 0 61.86 0/1
chr1 214656500 rs76083445 T C . PASS . . . . . . 36.68 68.95 121 1000.00 10.45 61.16 0 61.16 0/1
chr1 214656525 . GTG GCA . PASS . . . . . . 36.4 68.87 125 1000.00 1.83 56.00 0 56.00 0/1
chr1 214656575 rs74142715 C T . PASS . . . . . . 35.81 69.67 173 1000.00 6.30 52.60 0 52.60 0/1
chr1 214656606 rs77432910 CTCTT C . PASS 0.5000000 0.4885000 0.4762000 0.4911000 0.4969000 0.4912000 36.17 69.58 232 1000.00 0.86 48.28 0 48.28 0/1
chr1 214656667 . GGC GCT . PASS . . . . . . 35.84 69.31 215 1000.00 1.37 43.26 0 43.26 0/1
chr1 214656697 rs3795525 C T . PASS . . . . . . 35.8 69.96 163 1000.00 6.85 30.67 0 30.67 0/1
chr1 214656740 rs78564084 A G . PASS . . . . . . 36.4 68.05 81 547.13 16.79 24.69 0 24.69 0/1
chr1 214656762 rs77163514 T G . PASS . . . . . . 37.0 69.78 49 191.83 36.73 18.37 0 18.37 0/1
chr1 214656775 rs369404345 A G . PASS . . . . . . 37.0 69.67 34 115.82 35.29 17.65 0 17.65 0/1
chr1 214787130 rs2070064 G A . PASS 0.0522000 0.3156000 0.1210000 0.4990000 0.2771000 0.2362000 36.45 70.0 47 733.00 0.39 46.81 0 46.81 0/1
chr1 214814571 rs3795521 C T . PASS 0.0522000 0.3170000 0.1220000 0.4990000 0.2894000 0.2390000 35.5 70.0 34 509.51 4.41 47.06 0 47.06 0/1
chr1 214820099 rs3748697 A G . PASS 0.0522000 0.3127000 0.1220000 0.4831000 0.2883000 0.2350000 34.6 68.67 27 476.79 5.93 55.56 0 55.56 0/1
chr1 214826196 rs335524 G A . PASS 0.2874000 0.5893000 0.8849000 0.4443000 0.6973000 0.5611000 36.08 70.0 27 417.26 19.37 48.15 0 48.15 0/1
chr1 214826364 rs335523 G A . PASS 0.2852000 0.5504000 0.8393000 0.4503000 0.6524000 0.5383000 37.0 70.0 11 268.58 18.18 72.73 0 72.73 0/1
chr1 214828812 rs435043 A G . PASS 0.7867000 0.6657000 0.8879000 0.5616000 0.7423000 0.7364000 37.0 70.0 21 280.25 19.05 42.86 0 42.86 0/1
chr1 214830592 rs72759668 A G . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 36.62 70.0 54 1000.00 3.94 59.26 0 59.26 0/1
chr1 214830617 rs438034 A G . PASS 0.3540000 0.6383000 0.8879000 0.5606000 0.7434000 0.6184000 37.0 70.0 45 542.18 5.23 37.78 0 37.78 0/1
chr1 214837110 rs7289 C G . PASS 0.3775000 0.6772000 0.8889000 0.5606000 0.7474000 0.6310000 36.23 70.0 71 1000.00 9.90 43.66 0 43.66 0/1
chr1 215043734 rs10399859 C T . PASS . . . . . . 33.0 68.67 10 277.48 6.67 90.00 0 90.00 0/1
chr1 215043797 rs6662371 T C . PASS . . . . . . 37.0 48.67 36 109.80 11.11 16.67 0 16.67 0/1
chr1 215043884 rs6662483 T C . PASS 0.4191000 0.7464000 0.6637000 0.7346000 0.5930000 0.6110000 37.0 63.7 70 1000.00 9.44 47.14 0 47.14 0/1
chr1 215043890 rs9919169 G C . PASS 0.1664000 0.0504000 0.2212000 0.0507000 0.2117000 0.1470000 37.0 69.55 75 1000.00 9.00 53.33 0 53.33 0/1
chr1 215043925 rs6686227 A G . PASS . . . . . . 37.0 69.69 50 903.07 7.69 52.00 0 52.00 0/1
chr1 215154797 rs6681013 C G . PASS 0.5643000 0.5490000 0.3333000 0.5507000 0.6595000 0.5315000 36.51 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 215345263 rs3834061,rs71868745,rs71167811 GTCTCTC G . PASS . . . . . . 37.0 70.0 17 446.80 6.33 76.47 0 76.47 0/1
chr1 215368514 rs1556907 A G . PASS 0.2534000 0.3300000 0.3452000 0.4254000 0.6002000 0.3848000 37.0 70.0 16 128.23 22.50 31.25 0 31.25 0/1
chr1 215753355 rs11803705 T G . PASS 0.0439000 0.2363000 0.4444000 0.2992000 0.5215000 0.2957000 36.62 70.0 69 1000.00 2.36 46.38 0 46.38 0/1
chr1 215781574 rs3767255 A G . PASS 0.0681000 0.2421000 0.4415000 0.3062000 0.5164000 0.3027000 34.0 70.0 16 229.51 12.50 50.00 0 50.00 0/1
chr1 215793834 rs14137 G A . PASS 0.2867000 0.6124000 0.3492000 0.6372000 0.2843000 0.4143000 36.2 70.0 34 479.74 5.10 44.12 0 44.12 0/1
chr1 215844373 rs45549044 C T . PASS 0.0000000 0.0043000 0.0000000 0.0070000 0.0010000 0.0021965 37.0 70.0 74 1000.00 10.33 60.81 0 60.81 0/1
chr1 215848587 rs2797234 T C . PASS 0.1793000 0.4539000 0.3155000 0.3738000 0.2781000 0.3031000 36.25 70.0 44 491.42 17.05 36.36 0 36.36 0/1
chr1 215848641 rs2797235 T C . PASS 0.6127000 0.7954000 0.6429000 0.8091000 0.6442000 0.6897000 36.44 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 215880177 rs7546433 A G . PASS 0.4713000 0.6369000 0.5685000 0.6630000 0.5194000 0.5617000 35.74 70.0 19 734.13 0.00 100.00 0 100.00 1/1
chr1 215914646 rs6694510 T A . PASS 0.2300000 0.4035000 0.3938000 0.2425000 0.1708000 0.2780000 37.0 70.0 13 216.64 17.58 53.85 0 53.85 0/1
chr1 215914826 rs35309576 T C . PASS 0.2027000 0.1960000 0.0843000 0.2356000 0.0736000 0.1593000 36.66 70.0 53 1000.00 8.73 66.04 0 66.04 0/1
chr1 215916563 rs11120616 G A . PASS 0.1490000 0.1931000 0.0843000 0.2346000 0.0736000 0.1446000 35.15 70.0 86 1000.00 1.61 45.35 0 45.35 0/1
chr1 215960167 rs10864198 T G . PASS 0.7057000 0.4899000 0.6518000 0.5358000 0.4898000 0.5887000 36.6 70.0 64 1000.00 17.29 46.88 0 46.88 0/1
chr1 216172380 rs10864219 A G . PASS 0.4206000 0.6513000 0.8343000 0.4970000 0.6370000 0.5935000 37.0 70.0 57 798.45 6.14 42.11 0 42.11 0/1
chr1 216197083 rs17025886 G C . PASS 0.4652000 0.1686000 0.2044000 0.2137000 0.3313000 0.2949000 37.0 70.0 22 440.18 10.49 59.09 0 59.09 0/1
chr1 216197115 rs10082132 A G . PASS 0.3245000 0.6383000 0.6845000 0.4573000 0.4131000 0.4844000 35.67 70.0 24 259.22 30.56 37.50 0 37.50 0/1
chr1 216219781 rs6657250 A G . PASS 0.7965000 0.4669000 0.4544000 0.6551000 0.5000000 0.5956000 37.0 70.0 27 262.20 14.81 33.33 0 33.33 0/1
chr1 216246675 rs35944387 AG A . PASS 0.7398000 0.7954000 0.9454000 0.7117000 0.7607000 0.7873000 36.78 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 216258251 rs72746307 T C . PASS 0.0008000 0.0029000 0.0000000 0.0040000 0.0020000 0.0017971 36.14 70.0 31 446.99 13.36 45.16 0 45.16 0/1
chr1 216348764 rs1805049 C T . PASS 0.5537000 0.7017000 0.7788000 0.6143000 0.7106000 0.6623000 36.28 69.76 83 1000.00 0.00 100.00 0 100.00 1/1
chr1 216390694 rs1324330 C T . PASS 0.2950000 0.6844000 0.7738000 0.6083000 0.7004000 0.5875000 36.08 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 216592003 rs4253963 T C . PASS 0.4531000 0.6614000 0.8175000 0.6640000 0.6329000 0.6328000 36.5 70.0 24 954.99 0.00 100.00 0 100.00 1/1
chr1 216595306 rs10779261 C T . PASS 0.7640000 0.7089000 0.8125000 0.7326000 0.7710000 0.7612000 36.45 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 216674316 rs6689872 T A . PASS 0.5560000 0.4092000 0.6240000 0.3211000 0.3865000 0.4690000 36.23 69.35 66 1000.00 9.68 46.97 0 46.97 0/1
chr1 216692669 rs945453 C T . PASS 0.7330000 0.6354000 0.7381000 0.4344000 0.5900000 0.6326000 37.0 70.0 74 997.91 4.14 40.54 0 40.54 0/1
chr1 216741314 rs11572766 C T . PASS 0.0076000 0.0965000 0.0030000 0.1978000 0.1442000 0.0839000 33.73 70.0 27 309.71 8.75 40.74 0 40.74 0/1
chr1 216886276 rs2789717 G A . PASS 0.4380000 0.5447000 0.5427000 0.4344000 0.5910000 0.5030000 36.71 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 217207089 rs4846806 C T . PASS 0.5507000 0.5288000 0.4712000 0.3777000 0.5634000 0.4994000 36.5 70.0 63 768.39 7.54 38.10 0 38.10 0/1
chr1 217604777 rs7520483 G A . PASS 0.3442000 0.2277000 0.0863000 0.3121000 0.2730000 0.2558000 36.4 70.0 43 661.50 4.19 46.51 0 46.51 0/1
chr1 217671771 rs724803 C G . PASS 0.1422000 0.3084000 0.1567000 0.3072000 0.2689000 0.2260000 35.59 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 217784431 rs145143662 A AC . PASS 0.0900000 0.0303000 0.0010000 0.0437000 0.0450000 0.0457000 34.43 70.0 47 359.25 20.29 27.66 0 29.79 0/1
chr1 217856787 rs71301099 A AT . PASS 0.0772000 0.1960000 0.0992000 0.3559000 0.1667000 0.1715000 37.0 70.0 12 82.91 16.67 33.33 0 33.33 0/1
chr1 217947738 rs6604561 G A . PASS 0.6861000 0.6801000 0.7292000 0.8101000 0.7270000 0.7268000 35.74 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 217971889 rs12047387 G A . PASS 0.0234000 0.1902000 0.4812000 0.1928000 0.3978000 0.2458000 34.6 70.0 15 119.22 13.33 33.33 0 33.33 0/1
chr1 217971980 rs7532704 C T . PASS 0.4478000 0.3386000 0.6022000 0.3817000 0.5429000 0.4690000 36.1 69.7 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 217971993 rs6604562 A G . PASS 0.5915000 0.3530000 0.6081000 0.3817000 0.5440000 0.5104000 36.68 69.73 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 217974998 rs17676037 A T . PASS 0.0068000 0.0317000 0.0010000 0.0378000 0.0215000 0.0181710 37.0 70.0 13 258.41 11.54 61.54 0 61.54 0/1
chr1 218023820 rs34846382 C CA . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.18 69.98 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 218218833 rs10465668 C T . PASS 0.3222000 0.6772000 0.5873000 0.5964000 0.6380000 0.5415000 35.0 70.0 42 556.95 12.70 42.86 0 42.86 0/1
chr1 218564881 rs947712 C T . PASS 0.5242000 0.4928000 0.5427000 0.3449000 0.5235000 0.4874000 35.88 70.0 65 1000.00 7.60 49.23 0 49.23 0/1
chr1 218578726 rs142802402 ACT A . PASS . . . . . . 35.06 70.0 30 507.98 15.83 53.33 0 53.33 0/1
chr1 219249108 rs1256642 C T . PASS 0.6770000 0.5807000 0.6974000 0.3310000 0.4059000 0.5453000 34.88 70.0 42 515.18 8.12 40.48 0 40.48 0/1
chr1 219366400 rs35359058 T TGG . PASS 0.7632000 0.7651000 0.6438000 0.7823000 0.7127000 0.7334000 37.0 70.0 19 730.55 21.05 21.05 0 100.00 0/1
chr1 219366400 rs35359058,rs60036848 T TG . PASS 0.7632000 0.7651000 0.6438000 0.7823000 0.7127000 0.7334000 36.25 70.0 19 730.55 7.52 73.68 0 100.00 0/1
chr1 219383848 rs5781096,rs3087015 A ACTTTTT . PASS 0.8563000 0.9957000 1.0000000 1.0000000 1.0000000 0.9615000 36.4 70.0 15 530.46 0.00 100.00 0 100.00 1/1
chr1 219383867 rs940571 T C . PASS 0.8517000 0.9957000 1.0000000 1.0000000 1.0000000 0.9603000 36.33 68.89 18 704.37 0.00 100.00 0 100.00 1/1
chr1 219383905 rs940570 A G . PASS 0.8631000 0.9957000 1.0000000 1.0000000 1.0000000 0.9633000 36.52 69.2 25 996.76 0.00 100.00 0 100.00 1/1
chr1 219783279 rs79789352 T A . PASS . . . . . . 36.68 55.8 169 1000.00 3.98 67.46 0 67.46 0/1
chr1 219783709 rs368783050 G A . PASS 0.0923000 0.2896000 0.6726000 0.4006000 0.5010000 0.3782000 36.0 46.0 39 339.38 33.33 30.77 0 30.77 0/1
chr1 219784636 . C T . PASS . . . . . . 35.8 49.8 59 195.65 52.54 16.95 0 16.95 0/1
chr1 219859210 rs1572504 C T . PASS 0.4221000 0.1974000 0.2024000 0.2266000 0.3037000 0.2843000 37.0 70.0 42 718.29 4.76 50.00 0 50.00 0/1
chr1 220089352 rs2231734 A C . PASS 0.1362000 0.2478000 0.4107000 0.3857000 0.3180000 0.2925000 37.0 70.0 10 142.13 0.00 50.00 0 50.00 0/1
chr1 220142023 rs1061248 C T . PASS 0.3873000 0.3674000 0.5804000 0.4960000 0.5470000 0.4764000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 220142070 rs1061242 C T . PASS 0.3865000 0.3674000 0.5804000 0.4960000 0.5470000 0.4762000 35.71 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 220145371 rs2795315 T G . PASS 0.9902000 0.8256000 0.9216000 0.8121000 0.8487000 0.8902000 36.43 70.0 21 825.53 0.00 100.00 0 100.00 1/1
chr1 220151808 rs3215088 C CAA . PASS 0.3865000 0.3674000 0.5804000 0.5010000 0.5470000 0.4772000 37.0 70.0 15 556.46 0.00 100.00 0 100.00 1/1
chr1 220154246 rs35193743 AT A . PASS . . . . . . 34.57 70.0 23 859.63 0.00 100.00 0 100.00 1/1
chr1 220154602 rs1694599 T C . PASS 0.8003000 0.8026000 0.9216000 0.8111000 0.8476000 0.8365000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 220154659 . TAA T . PASS . . . . . . 36.39 70.0 43 1000.00 2.95 95.35 0 95.35 1/1
chr1 220156090 rs2647462 T C . PASS 0.7995000 0.8040000 0.9216000 0.8111000 0.8476000 0.8365000 37.0 70.0 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 220160433 rs2647434 A G . PASS 0.9902000 0.8732000 0.9474000 0.7952000 0.8354000 0.8960000 37.0 70.0 17 674.61 0.00 100.00 0 100.00 1/1
chr1 220161859 rs2291838 C G . PASS 0.3744000 0.1988000 0.3651000 0.1252000 0.2321000 0.2704000 37.0 70.0 11 55.58 0.00 27.27 0 27.27 0/1
chr1 220162195 rs2254494 T C . PASS 0.3971000 0.6427000 0.5804000 0.6660000 0.5930000 0.5603000 34.0 70.0 24 205.44 33.33 33.33 0 33.33 0/1
chr1 220165162 rs1694577 T C . PASS 0.3971000 0.6427000 0.5823000 0.6660000 0.5920000 0.5605000 37.0 70.0 44 628.73 2.39 43.18 0 43.18 0/1
chr1 220165166 rs3767669 T C . PASS 0.3540000 0.1974000 0.3631000 0.1252000 0.2352000 0.2650000 36.5 70.0 44 825.57 1.52 54.55 0 54.55 0/1
chr1 220178717 rs5781162 T TA . PASS 0.9902000 0.8732000 0.9395000 0.7932000 0.8609000 0.8990000 36.4 70.0 17 659.02 0.00 100.00 0 100.00 1/1
chr1 220179322 rs2647420 A T . PASS 0.7504000 0.8444000 0.9375000 0.7893000 0.8497000 0.8283000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 220184150 rs34170326 CA C . PASS 0.7905000 0.8890000 0.9077000 0.8529000 0.8978000 0.8612000 37.0 70.0 11 342.85 0.00 90.91 0 90.91 0/1
chr1 220192495 rs2245457 C G . PASS 0.9902000 0.8732000 0.9395000 0.7932000 0.8609000 0.8990000 37.0 70.0 23 921.09 0.00 100.00 0 100.00 1/1
chr1 220197545 rs2577159 C T . PASS 0.7511000 0.8444000 0.9375000 0.7893000 0.8497000 0.8285000 34.82 70.0 11 399.97 0.00 100.00 0 100.00 1/1
chr1 220197625 rs2230301 G T . PASS 0.9902000 0.8732000 0.9395000 0.7932000 0.8609000 0.8990000 37.0 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 220205943 rs2789816 G A . PASS 0.7504000 0.8444000 0.9375000 0.7893000 0.8497000 0.8283000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 220205980 rs2577138 A C . PASS 0.7504000 0.8444000 0.9385000 0.7893000 0.8497000 0.8285000 35.91 68.18 11 407.83 0.00 100.00 0 100.00 1/1
chr1 220207017 rs2647456 C T . PASS 0.9902000 0.8732000 0.9405000 0.7932000 0.8609000 0.8992000 36.52 70.0 25 996.76 0.00 100.00 0 100.00 1/1
chr1 220307676 rs35775533 A G . PASS 0.0015000 0.0591000 0.0010000 0.0895000 0.0112000 0.0290000 35.8 70.0 21 310.02 17.14 47.62 0 47.62 0/1
chr1 220487657 rs10863543 C T . PASS 0.3298000 0.4006000 0.4474000 0.4960000 0.4243000 0.4151000 37.0 70.0 24 271.22 2.78 37.50 0 37.50 0/1
chr1 220528842 rs35342383 T TA . PASS 0.5076000 0.4654000 0.4653000 0.3797000 0.4274000 0.4519000 37.0 70.0 31 443.42 4.47 41.94 0 45.16 0/1
chr1 220771740 rs5781180 T TTA . PASS . . . . . . 36.25 70.0 11 169.45 29.09 45.45 0 54.55 0/1
chr1 220789236 rs2786599 C T . PASS 0.7587000 0.9755000 0.9990000 0.9990000 1.0000000 0.9325000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 220789355 rs369680057,rs67564055 AT A . PASS . . . . . . 37.0 70.0 21 354.23 5.19 52.38 0 52.38 0/1
chr1 220789362 rs12137627 T A . PASS 0.2708000 0.5144000 0.5268000 0.5755000 0.5450000 0.4708000 37.0 70.0 20 487.96 18.57 70.00 0 70.00 0/1
chr1 220808921 rs10746403 T C . PASS 0.9357000 0.5836000 0.5377000 0.7008000 0.6575000 0.7053000 34.6 70.0 27 279.95 20.74 37.04 0 37.04 0/1
chr1 220824115 rs12123306 G C . PASS 0.0651000 0.2695000 0.0169000 0.4563000 0.2157000 0.1917000 37.0 70.0 42 881.22 5.33 59.52 0 59.52 0/1
chr1 220825523 rs3737296 A G . PASS 0.9841000 0.6988000 0.6518000 0.7704000 0.7812000 0.7951000 37.0 70.0 31 250.16 4.30 29.03 0 29.03 0/1
chr1 220833990 rs6695583 C T . PASS 0.3427000 0.5216000 0.5298000 0.6869000 0.5879000 0.5222000 37.0 70.0 29 256.17 7.66 31.03 0 31.03 0/1
chr1 220970028 rs2642438 A G . PASS 0.9508000 0.7767000 0.7679000 0.7217000 0.7751000 0.8095000 37.0 70.0 106 1000.00 4.34 37.74 0 37.74 0/1
chr1 220978645 rs17596144 C T . PASS 0.0174000 0.0865000 0.0298000 0.1272000 0.1769000 0.0827000 37.0 70.0 36 318.64 25.76 30.56 0 30.56 0/1
chr1 221053545 rs12141189 T C . PASS 0.1710000 0.2767000 0.2252000 0.2505000 0.1626000 0.2109000 36.4 69.5 83 1000.00 13.61 48.19 0 48.19 0/1
chr1 221054761 rs17597773 C G . PASS 0.1702000 0.2767000 0.2252000 0.2505000 0.1626000 0.2107000 36.45 70.0 49 722.83 5.75 44.90 0 44.90 0/1
chr1 221055463 rs2247213 G A . PASS 0.4675000 0.2911000 0.0962000 0.3400000 0.2434000 0.2989000 37.0 70.0 22 235.48 13.64 36.36 0 36.36 0/1
chr1 221057646 rs2738755 C T . PASS 0.4675000 0.2911000 0.0952000 0.3400000 0.2434000 0.2987000 36.71 70.0 78 1000.00 10.26 53.85 0 53.85 0/1
chr1 221057662 rs3738182 G A . PASS 0.2572000 0.1801000 0.0942000 0.1779000 0.2014000 0.1869000 36.59 70.0 63 977.23 3.39 46.03 0 46.03 0/1
chr1 221523403 rs10863605 A G . PASS 0.5295000 0.5447000 0.4812000 0.6173000 0.4908000 0.5319000 36.61 70.0 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 221866185 rs61820075 G A . PASS 0.2920000 0.1830000 0.0337000 0.2674000 0.1779000 0.1977000 37.0 70.0 13 95.48 15.38 30.77 0 30.77 0/1
chr1 221866318 rs17437483 A G . PASS 0.3850000 0.5476000 0.5446000 0.5736000 0.6329000 0.5260000 35.63 70.0 77 1000.00 9.87 45.45 0 45.45 0/1
chr1 221912361 rs1141714 T C . PASS 0.8313000 0.6816000 0.6736000 0.6412000 0.7270000 0.7202000 36.56 70.0 53 923.79 5.59 50.94 0 50.94 0/1
chr1 221912808 rs1136448 T C . PASS 0.0961000 0.4179000 0.4484000 0.3777000 0.4806000 0.3433000 37.0 69.41 67 1000.00 4.21 50.75 0 50.75 0/1
chr1 222230500 rs1372651 G A . PASS 0.3759000 0.6196000 0.6498000 0.6720000 0.4918000 0.5469000 36.76 69.61 88 1000.00 5.26 57.95 0 57.95 0/1
chr1 222538919 rs146392015,rs35301584 C CGTT . PASS 0.3880000 0.4380000 0.4425000 0.4652000 0.5542000 0.4539000 35.91 70.0 96 1000.00 4.58 46.88 0 46.88 0/1
chr1 222697088 rs3748662 G A . PASS 0.2443000 0.2565000 0.3254000 0.2604000 0.2413000 0.2650000 37.0 70.0 26 724.68 0.77 76.92 0 76.92 0/1
chr1 222700416 rs1487523 C T . PASS 0.4365000 0.2666000 0.3383000 0.2604000 0.2382000 0.3191000 36.0 70.0 26 378.51 19.23 46.15 0 46.15 0/1
chr1 222705270 rs4846373 T C . PASS 0.7451000 0.5951000 0.6548000 0.3569000 0.3476000 0.5505000 35.91 69.09 43 733.03 19.45 51.16 0 51.16 0/1
chr1 222713503 rs3748664 C G . PASS 0.3434000 0.5058000 0.5089000 0.2604000 0.3078000 0.3756000 35.83 70.0 102 1000.00 13.15 40.20 0 40.20 0/1
chr1 222713631 rs3748666 G C . PASS 0.3434000 0.5058000 0.5089000 0.2604000 0.3078000 0.3756000 36.76 70.0 114 1000.00 3.20 44.74 0 44.74 0/1
chr1 222713750 rs3828079 G A . PASS 0.7451000 0.5965000 0.6538000 0.3549000 0.3466000 0.5499000 37.0 70.0 20 450.34 11.54 65.00 0 65.00 0/1
chr1 222715247 rs11487812 A G . PASS 0.7451000 0.5965000 0.6558000 0.3559000 0.3466000 0.5505000 34.0 70.0 18 223.49 16.67 44.44 0 44.44 0/1
chr1 222721288 rs4846382 C T . PASS 0.3124000 0.7205000 0.6379000 0.6044000 0.7669000 0.5819000 36.6 70.0 150 1000.00 0.00 100.00 0 100.00 1/1
chr1 222734628 rs10495195 C T . PASS 0.0620000 0.0764000 0.0407000 0.0885000 0.1984000 0.0917000 36.08 70.0 24 426.30 19.87 54.17 0 54.17 0/1
chr1 222734803 rs1134898 G C . PASS 0.0234000 0.3530000 0.3671000 0.5119000 0.4131000 0.3125000 36.69 70.0 84 1000.00 1.10 46.43 0 46.43 0/1
chr1 222737481 rs17464254 C G . PASS 0.0424000 0.0764000 0.0407000 0.0885000 0.2004000 0.0869000 37.0 70.0 25 305.84 12.00 40.00 0 40.00 0/1
chr1 222751034 rs2936033 T C . PASS 0.3676000 0.5101000 0.5714000 0.7634000 0.5624000 0.5459000 35.29 70.0 12 211.80 4.76 58.33 0 58.33 0/1
chr1 222798106 rs3008617 G A . PASS 0.9939000 1.0000000 1.0000000 1.0000000 1.0000000 0.9984000 36.28 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 222802006 rs2936053 A G . PASS 0.9834000 1.0000000 1.0000000 1.0000000 1.0000000 0.9956000 35.72 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 222802803 rs3748626 T G . PASS 0.2504000 0.5072000 0.5823000 0.7296000 0.5491000 0.5074000 36.38 70.0 78 1000.00 0.00 100.00 0 100.00 1/1
chr1 222802926 rs3008620 C T . PASS 0.5711000 0.9035000 0.8899000 0.8976000 0.8456000 0.8005000 36.79 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 222823743 rs67180937 T G . PASS 0.1868000 0.5144000 0.5823000 0.7376000 0.5481000 0.4930000 36.04 70.0 28 899.34 1.43 89.29 0 89.29 0/1
chr1 222825403 rs3002150 G A . PASS 0.9501000 0.9813000 0.8869000 0.9771000 0.8753000 0.9325000 36.66 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 222825717 rs10495198 T C . PASS 0.1868000 0.5144000 0.6052000 0.7376000 0.5798000 0.5038000 36.56 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 222825761 rs2936019 G A . PASS 0.9501000 0.9813000 0.8869000 0.9771000 0.8753000 0.9325000 36.25 70.0 16 620.83 0.00 100.00 0 100.00 1/1
chr1 222826481 rs2291832 G A . PASS 0.1596000 0.5086000 0.5813000 0.7376000 0.5481000 0.4848000 36.31 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 222832295 rs2291834 T C . PASS 0.1868000 0.5144000 0.5813000 0.7386000 0.5481000 0.4930000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 222833538 rs2291835 C G . PASS 0.0870000 0.1311000 0.1607000 0.1988000 0.0685000 0.1268000 37.0 70.0 51 979.44 9.10 54.90 0 54.90 0/1
chr1 222833601 rs3002153 T C . PASS 0.9826000 0.9986000 1.0000000 0.9990000 1.0000000 0.9950000 36.84 70.0 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 222837594 rs2270707 G A . PASS 0.6233000 0.5937000 0.6091000 0.8201000 0.6084000 0.6530000 36.52 70.0 25 996.76 0.00 100.00 0 100.00 1/1
chr1 222916149 rs34273035 AT A . PASS 0.3200000 0.5014000 0.5754000 0.6958000 0.5123000 0.5096000 35.68 70.0 70 1000.00 0.00 92.86 0 92.86 0/1
chr1 222919895 rs2378607 T G . PASS 0.2375000 0.7378000 0.7708000 0.6998000 0.6585000 0.5893000 36.7 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 222923351 rs6683071 A G . PASS 0.7481000 0.8545000 0.8006000 0.8260000 0.7607000 0.7915000 36.6 70.0 119 1000.00 0.00 100.00 0 100.00 1/1
chr1 223156382 rs2926159 C T . PASS 0.9992000 1.0000000 1.0000000 1.0000000 1.0000000 0.9998000 36.25 70.0 16 620.83 0.00 100.00 0 100.00 1/1
chr1 223178561 rs9441941 A C . PASS 0.4153000 0.5346000 0.4782000 0.6163000 0.4826000 0.4980000 36.5 70.0 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 223209231 rs2789919 C T . PASS 0.3109000 0.6772000 0.5407000 0.5755000 0.4560000 0.4894000 37.0 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 223209289 rs2789920 A G . PASS 0.3464000 0.6787000 0.5417000 0.5755000 0.4560000 0.4992000 36.59 70.0 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 223209318 rs72744143 G C . PASS 0.0008000 0.0014000 0.0000000 0.0040000 0.0000000 0.0011981 36.71 70.0 76 1000.00 4.26 55.26 0 55.26 0/1
chr1 223209320 rs72744144 A T . PASS 0.0000000 0.0014000 0.0000000 0.0050000 0.0000000 0.0011981 37.0 70.0 74 1000.00 4.12 56.76 0 56.76 0/1
chr1 223283910 rs7512943 A G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.5 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 223284528 rs5744174 A G . PASS 0.1089000 0.3487000 0.1984000 0.4095000 0.4663000 0.2903000 36.11 69.26 57 899.75 1.95 47.37 0 47.37 0/1
chr1 223397037 rs851149 T C . PASS 0.3139000 0.2017000 0.1974000 0.3340000 0.2505000 0.2666000 37.0 70.0 19 286.28 3.51 47.37 0 47.37 0/1
chr1 223518146 rs825131 T C . PASS 0.4773000 0.5519000 0.5665000 0.4642000 0.5010000 0.5076000 36.66 70.0 73 1000.00 1.02 47.95 0 47.95 0/1
chr1 223715248 rs36108579 GT G . PASS 0.3033000 0.5793000 0.5337000 0.5606000 0.4468000 0.4677000 36.22 70.0 51 747.17 0.17 45.10 0 45.10 0/1
chr1 223717379 rs61823524 A C . PASS 1.0000000 0.9294000 0.9365000 0.9980000 1.0000000 0.9770000 36.58 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 223717484 rs34158997 G A . PASS 0.5356000 0.7493000 0.6687000 0.7555000 0.7331000 0.6747000 36.17 70.0 150 1000.00 5.89 58.00 0 58.00 0/1
chr1 223718518 rs61823552 C A . PASS 0.5666000 0.7493000 0.6746000 0.7555000 0.7342000 0.6843000 37.0 70.0 25 222.30 48.00 32.00 0 32.00 0/1
chr1 223718651 rs61823553 G A . PASS 0.2042000 0.5692000 0.5397000 0.5586000 0.4479000 0.4411000 37.0 70.0 57 1000.00 4.17 56.14 0 56.14 0/1
chr1 223718670 rs61823554 G A . PASS 0.2632000 0.5764000 0.5456000 0.5586000 0.4479000 0.4589000 36.52 70.0 39 882.39 2.67 64.10 0 64.10 0/1
chr1 223722780 rs34606532 G A . PASS 0.2057000 0.5692000 0.5496000 0.5586000 0.4479000 0.4435000 34.0 70.0 16 229.51 37.50 50.00 0 50.00 0/1
chr1 223799857 rs34786756 C T . PASS 0.9470000 0.7003000 0.6994000 0.6531000 0.7669000 0.7688000 36.48 70.0 39 798.85 0.22 58.97 0 58.97 0/1
chr1 223799871 rs35116708 C T . PASS 0.5696000 0.6110000 0.4752000 0.6044000 0.4765000 0.5451000 37.0 70.0 48 992.62 5.95 58.33 0 58.33 0/1
chr1 223807239 rs34693465 C G . PASS 0.2806000 0.2176000 0.1230000 0.2087000 0.1176000 0.1939000 37.0 70.0 19 156.81 31.58 31.58 0 31.58 0/1
chr1 223807262 rs34900680 G A . PASS 0.1626000 0.1988000 0.1141000 0.2048000 0.0532000 0.1450000 37.0 70.0 14 176.01 14.29 42.86 0 42.86 0/1
chr1 223813586 rs35539373 G T . PASS 0.6740000 0.5432000 0.5675000 0.5229000 0.6748000 0.6042000 36.5 70.0 41 830.45 0.41 58.54 0 58.54 0/1
chr1 223814671 rs61825208 A T . PASS 0.6710000 0.5432000 0.5685000 0.5229000 0.6769000 0.6040000 36.76 70.0 103 1000.00 5.20 48.54 0 48.54 0/1
chr1 223814682 rs67990281 A T . PASS 0.1611000 0.1988000 0.1131000 0.2058000 0.0470000 0.1434000 36.33 70.0 113 1000.00 8.13 47.79 0 47.79 0/1
chr1 223816322 rs66602040 A G . PASS 0.9523000 0.7550000 0.6925000 0.7356000 0.7832000 0.7961000 36.5 70.0 24 954.99 0.00 100.00 0 100.00 1/1
chr1 223816347 rs61825210 A G . PASS 0.9592000 0.7550000 0.6925000 0.7396000 0.7832000 0.7987000 36.58 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 223816577 rs61825211 T C . PASS 0.9531000 0.7550000 0.6935000 0.7356000 0.7843000 0.7967000 37.0 70.0 26 1000.00 0.00 100.00 0 100.00 1/1
chr1 223853099 rs66700641 C A . PASS 0.0038000 0.0735000 0.0000000 0.0924000 0.0143000 0.0325000 36.7 70.0 82 1000.00 7.44 48.78 0 48.78 0/1
chr1 223853440 rs10916015 A G . PASS 0.9334000 0.9957000 0.8472000 1.0000000 0.9059000 0.9327000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 223869600 rs11587370 G T . PASS 0.4009000 0.4078000 0.3155000 0.5606000 0.4663000 0.4295000 36.31 69.62 106 1000.00 1.81 49.06 0 49.06 0/1
chr1 223900408 rs25655 C G . PASS 0.9539000 0.9971000 1.0000000 1.0000000 1.0000000 0.9874000 37.0 70.0 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 223905532 rs17596 G A . PASS 0.3510000 0.6354000 0.5823000 0.7634000 0.7382000 0.5954000 36.03 70.0 72 1000.00 2.55 51.39 0 51.39 0/1
chr1 223934720 rs17600 G A . PASS 0.2890000 0.7233000 0.7143000 0.9016000 0.9346000 0.6839000 37.0 70.0 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 223949314 rs28370127 G C . PASS 0.0008000 0.0072000 0.0000000 0.0169000 0.0061000 0.0057907 37.0 70.0 30 207.24 13.33 26.67 0 26.67 0/1
chr1 223951985 rs737066 C A . PASS 0.2617000 0.1960000 0.1815000 0.0924000 0.0644000 0.1639000 36.08 70.0 28 410.10 5.49 46.43 0 46.43 0/1
chr1 223954080 rs17599 A C . PASS 0.0983000 0.2493000 0.2698000 0.2425000 0.2239000 0.2073000 36.33 68.89 40 582.84 3.89 45.00 0 45.00 0/1
chr1 223959959 rs1153949 G A . PASS 0.2769000 0.2046000 0.1944000 0.0915000 0.0787000 0.1743000 36.5 70.0 58 783.43 0.00 41.38 0 41.38 0/1
chr1 223980207 rs1153936 G C . PASS 0.4198000 0.2133000 0.1935000 0.0944000 0.0798000 0.2139000 37.0 70.0 74 1000.00 2.40 48.65 0 48.65 0/1
chr1 223989966 rs1153933 C T . PASS 0.4160000 0.2147000 0.1935000 0.0934000 0.0798000 0.2129000 36.47 70.0 78 1000.00 5.30 57.69 0 57.69 0/1
chr1 224008913 rs3738370 G A . PASS 0.3759000 0.2089000 0.1925000 0.0905000 0.0787000 0.2005000 36.52 70.0 58 825.20 12.00 43.10 0 43.10 0/1
chr1 224044284 rs12730520 C A . PASS 0.1059000 0.2320000 0.1786000 0.2435000 0.2055000 0.1851000 37.0 70.0 32 451.85 1.79 43.75 0 43.75 0/1
chr1 224051461 rs6658752 A G . PASS 0.1044000 0.2363000 0.1786000 0.2455000 0.2065000 0.1859000 37.0 70.0 11 226.81 5.19 63.64 0 63.64 0/1
chr1 224051926 rs7519753 T C . PASS 0.4395000 0.2853000 0.2470000 0.2495000 0.2229000 0.2989000 36.54 70.0 39 924.16 2.56 66.67 0 66.67 0/1
chr1 224052192 rs6696120 G C . PASS 0.7882000 0.2781000 0.3631000 0.3191000 0.2873000 0.4399000 36.23 69.94 172 1000.00 0.00 100.00 0 100.00 1/1
chr1 224133240 rs147548627 G A . PASS 0.0779000 0.1066000 0.0208000 0.1978000 0.0982000 0.0984000 37.0 53.59 36 569.26 12.75 47.22 0 47.22 0/1
chr1 224218429 rs199851169 G A . PASS 0.2700000 0.2435000 0.0853000 0.3867000 0.1973000 0.2384000 37.0 53.21 28 468.03 7.14 50.00 0 50.00 0/1
chr1 224226372 rs147761086 T A . PASS 0.3260000 0.5922000 0.6538000 0.5089000 0.6319000 0.5254000 37.0 57.5 15 168.85 40.00 40.00 0 40.00 0/1
chr1 224302154 rs3066024 T TGAG . PASS 0.9470000 0.9928000 1.0000000 0.9990000 1.0000000 0.9848000 36.5 70.0 23 901.64 0.00 100.00 0 100.00 1/1
chr1 224318151 rs3065998,rs10651854 T TTTG . PASS 0.9478000 0.9928000 1.0000000 0.9990000 1.0000000 0.9850000 36.74 68.71 32 1000.00 2.82 96.88 0 100.00 1/1
chr1 224321984 rs1472167 C T . PASS 0.9826000 0.9957000 1.0000000 0.9990000 1.0000000 0.9946000 36.14 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 224345012 rs7543762 G A . PASS 0.9826000 0.9957000 1.0000000 0.9990000 1.0000000 0.9946000 36.14 70.0 14 537.29 0.00 100.00 0 100.00 1/1
chr1 224363370 rs6426178 A T . PASS 0.5212000 0.5778000 0.6111000 0.4742000 0.3988000 0.5138000 36.63 69.32 161 1000.00 0.00 100.00 0 100.00 1/1
chr1 224380234 rs908804 A G . PASS 0.2065000 0.2248000 0.3581000 0.0944000 0.0746000 0.1913000 37.0 70.0 19 328.05 7.37 52.63 0 52.63 0/1
chr1 224492381 rs7522125 C T . PASS 0.9622000 0.9971000 1.0000000 1.0000000 1.0000000 0.9896000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 224492746 rs3754090 C T . PASS 0.5242000 0.9337000 0.8899000 0.9672000 0.9162000 0.8201000 37.0 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 224495852 rs7534447 C T . PASS 0.5295000 0.9337000 0.8899000 0.9672000 0.9172000 0.8217000 36.54 70.0 78 1000.00 0.00 100.00 0 100.00 1/1
chr1 224505570 rs3066969 T TAA . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.17 69.44 35 1000.00 2.69 97.14 0 100.00 1/1
chr1 224517842 rs2896990 C T . PASS 0.5605000 0.9337000 0.8899000 0.9672000 0.9172000 0.8299000 36.56 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 224517907 rs4146965 A T . PASS 0.5242000 0.9337000 0.8899000 0.9672000 0.9172000 0.8203000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 224544529 rs7517754 A G . PASS 0.3616000 0.8141000 0.9891000 0.7505000 0.8885000 0.7316000 37.0 70.0 12 140.26 0.00 41.67 0 41.67 0/1
chr1 224585958 rs7522956 A C . PASS 0.5091000 0.1686000 0.0109000 0.2485000 0.1115000 0.2316000 37.0 70.0 27 383.36 44.44 44.44 0 44.44 0/1
chr1 224588825 rs7518109 T A . PASS 0.5530000 0.1700000 0.0109000 0.2505000 0.1125000 0.2440000 37.0 70.0 23 228.32 10.87 34.78 0 34.78 0/1
chr1 224621368 rs2405033 G C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.73 69.55 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 224762366 rs61825844 C G . PASS 0.0061000 0.0403000 0.0000000 0.0964000 0.0593000 0.0381000 37.0 70.0 30 541.40 7.50 53.33 0 53.33 0/1
chr1 224762915 rs56403019 G A . PASS 0.0681000 0.1066000 0.1984000 0.1948000 0.1258000 0.1364000 37.0 69.8 47 661.47 12.13 42.55 0 42.55 0/1
chr1 224868596 rs7525096 A C . PASS 0.2663000 0.1052000 0.1171000 0.1700000 0.1053000 0.1631000 37.0 70.0 31 329.54 28.15 35.48 0 35.48 0/1
chr1 224872443 rs3738364 A G . PASS 0.4130000 0.2450000 0.3056000 0.1978000 0.2045000 0.2841000 37.0 70.0 22 235.47 18.18 36.36 0 36.36 0/1
chr1 224872473 rs3738363 A G . PASS 0.4077000 0.1210000 0.1190000 0.1730000 0.1043000 0.2035000 37.0 70.0 30 336.70 13.94 36.67 0 36.67 0/1
chr1 224874744 rs10915694 C G . PASS 0.6301000 0.4769000 0.4940000 0.3728000 0.3282000 0.4708000 37.0 69.53 85 1000.00 1.09 50.59 0 50.59 0/1
chr1 224874775 rs4653403 G A . PASS 0.8192000 0.9510000 0.9087000 0.9960000 0.9254000 0.9117000 36.63 69.69 65 1000.00 0.00 100.00 0 100.00 1/1
chr1 225156457 rs16858926 G A . PASS 0.0023000 0.1671000 0.3036000 0.1044000 0.1421000 0.1336000 36.2 70.0 31 488.77 15.05 48.39 0 48.39 0/1
chr1 225230608 rs2501107 C T . PASS 0.3616000 0.7651000 0.7212000 0.9553000 0.8333000 0.7013000 35.73 69.7 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 225237850 rs2501086 A C . PASS 0.3616000 0.7651000 0.7212000 0.9553000 0.8333000 0.7013000 35.91 70.0 11 407.83 0.00 100.00 0 100.00 1/1
chr1 225266966 rs3105559 C G . PASS 0.3654000 0.7651000 0.7212000 0.9553000 0.8333000 0.7023000 36.79 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 225268343 rs3128651 A G . PASS 0.3654000 0.7651000 0.7262000 0.9553000 0.8333000 0.7033000 36.49 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 225268346 rs3128652 G A . PASS 0.3654000 0.7651000 0.7262000 0.9523000 0.8333000 0.7027000 37.0 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 225270409 rs3128655 A T . PASS 0.3366000 0.7277000 0.7133000 0.8817000 0.7771000 0.6621000 35.98 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 225273248 rs3128658 G T . PASS 0.3654000 0.7651000 0.7202000 0.9553000 0.8333000 0.7021000 35.15 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 225373072 rs61851487 C T . PASS 0.1331000 0.1902000 0.3125000 0.1133000 0.1431000 0.1751000 37.0 70.0 41 595.99 7.32 43.90 0 43.90 0/1
chr1 225394645 rs1466468 A T . PASS 0.1331000 0.1916000 0.3125000 0.1133000 0.1431000 0.1753000 35.67 70.0 19 270.11 3.51 47.37 0 47.37 0/1
chr1 225439988 rs630120 T C . PASS 0.6982000 0.4568000 0.5982000 0.2316000 0.3609000 0.4850000 35.67 70.0 18 277.28 11.11 50.00 0 50.00 0/1
chr1 225445652 rs670255 G T . PASS 0.6982000 0.4582000 0.5982000 0.2306000 0.3609000 0.4850000 35.8 70.0 29 687.48 2.76 68.97 0 68.97 0/1
chr1 225460626 rs656649 T A . PASS 0.5068000 0.4352000 0.6438000 0.2366000 0.3630000 0.4421000 37.0 70.0 24 434.16 11.54 54.17 0 54.17 0/1
chr1 225506262 rs4653418 G A . PASS 0.0567000 0.2680000 0.3353000 0.2107000 0.2740000 0.2155000 35.5 70.0 23 542.61 0.54 69.57 0 69.57 0/1
chr1 225512402 rs75859387 GT G . PASS 0.0635000 0.2695000 0.3363000 0.2107000 0.2740000 0.2177000 36.4 70.0 21 306.46 2.86 47.62 0 47.62 0/1
chr1 225528183 rs3856145 C A . PASS 0.6430000 0.4697000 0.5089000 0.4046000 0.5695000 0.5298000 35.96 70.0 44 767.64 0.20 52.27 0 52.27 0/1
chr1 225533684 rs6667999 A G . PASS 0.6399000 0.4697000 0.5089000 0.4046000 0.5695000 0.5290000 36.2 70.0 56 1000.00 1.90 53.57 0 53.57 0/1
chr1 225534219 rs7527925 T C . PASS 0.6407000 0.4697000 0.5089000 0.4046000 0.5695000 0.5292000 37.0 70.0 57 464.28 5.70 28.07 0 28.07 0/1
chr1 225534348 rs7535953 G A . PASS 0.6407000 0.4697000 0.5089000 0.4046000 0.5695000 0.5292000 37.0 69.43 87 1000.00 1.64 40.23 0 40.23 0/1
chr1 225546172 rs9659299 C G . PASS 0.5098000 0.4928000 0.5893000 0.2922000 0.3620000 0.4509000 35.5 70.0 15 240.38 3.33 53.33 0 53.33 0/1
chr1 225552624 rs10495239 G A . PASS 0.5129000 0.5159000 0.5962000 0.3479000 0.4356000 0.4818000 36.0 70.0 39 828.61 3.85 61.54 0 61.54 0/1
chr1 225552650 rs12563830 C T . PASS 0.5121000 0.5159000 0.5952000 0.3479000 0.4356000 0.4814000 36.0 70.0 23 387.54 2.90 52.17 0 52.17 0/1
chr1 225555512 rs11578981 C T . PASS 0.1876000 0.4366000 0.2321000 0.5696000 0.2761000 0.3251000 35.04 70.0 49 1000.00 1.70 97.96 0 100.00 1/1
chr1 225555602 rs12737248 T G . PASS 0.1914000 0.4366000 0.2321000 0.5716000 0.2914000 0.3295000 37.0 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 225562385 rs10915816 C T . PASS 0.3570000 0.8631000 0.9663000 0.8410000 0.6779000 0.7097000 37.0 69.73 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 225565015 rs3856154 T C . PASS 0.2950000 0.7507000 0.7619000 0.6590000 0.4540000 0.5563000 36.53 70.0 76 1000.00 0.00 100.00 0 100.00 1/1
chr1 225565073 rs3856155 C T . PASS 0.1710000 0.7118000 0.7411000 0.6123000 0.3885000 0.4918000 36.45 70.0 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 225569241 rs950210 T G . PASS 0.1936000 0.7435000 0.7639000 0.6561000 0.4540000 0.5284000 36.35 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 225576058 rs6679430 T C . PASS 0.1831000 0.7435000 0.7639000 0.6581000 0.4540000 0.5260000 36.29 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 225577648 rs12134158 C T . PASS 0.1634000 0.7104000 0.7371000 0.6083000 0.4029000 0.4908000 36.14 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 225586274 rs41304131 G T . PASS 0.0008000 0.0101000 0.0000000 0.0338000 0.0072000 0.0097844 36.64 70.0 62 1000.00 12.32 53.23 0 53.23 0/1
chr1 225603103 rs6702433 C T . PASS 0.3631000 0.8573000 0.9643000 0.8419000 0.6861000 0.7119000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 225607144 rs2230419 C T . PASS 0.3631000 0.8602000 0.9633000 0.8419000 0.6871000 0.7123000 37.0 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 225609884 rs1056608 A G . PASS 0.3328000 0.8329000 0.9018000 0.8022000 0.6401000 0.6709000 36.48 70.0 116 1000.00 0.00 100.00 0 100.00 1/1
chr1 225611661 rs1056607 C T . PASS 0.6286000 0.7839000 0.7440000 0.7058000 0.4663000 0.6571000 35.78 70.0 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 225611845 rs1340867 C T . PASS 0.5991000 0.7205000 0.7510000 0.6044000 0.3650000 0.6018000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 225685621 rs28364744,rs145776060 TAAG T . PASS 0.6838000 0.6484000 0.7034000 0.6849000 0.4427000 0.6360000 34.69 70.0 16 544.48 0.00 100.00 0 100.00 1/1
chr1 225877709 rs2769680 T C . PASS 0.6717000 0.5187000 0.6577000 0.3211000 0.3681000 0.5180000 36.71 70.0 84 1000.00 0.17 48.81 0 48.81 0/1
chr1 225965832 rs1461957 G T . PASS 0.0363000 0.1643000 0.1121000 0.1928000 0.1493000 0.1228000 35.5 70.0 13 246.40 5.77 61.54 0 61.54 0/1
chr1 225990957 . GGT GCC . PASS . . . . . . 36.91 69.46 132 1000.00 1.25 51.52 0 51.52 0/1
chr1 225991093 rs4653684 A G . PASS 0.2572000 0.5159000 0.6885000 0.4652000 0.7536000 0.5186000 36.67 69.39 72 1000.00 11.11 50.00 0 50.00 0/1
chr1 225991165 rs11588766 G A . PASS 0.0068000 0.1354000 0.1706000 0.1491000 0.1810000 0.1202000 36.08 70.0 25 423.29 17.85 52.00 0 52.00 0/1
chr1 225991176 rs4653685 T G . PASS 0.2579000 0.5159000 0.6885000 0.4652000 0.7536000 0.5188000 37.0 70.0 21 359.65 2.60 52.38 0 52.38 0/1
chr1 226019633 rs1051740 T C . PASS 0.1407000 0.3199000 0.4821000 0.3042000 0.3773000 0.3133000 37.0 70.0 61 1000.00 4.44 50.82 0 50.82 0/1
chr1 226026406 rs2234922 A G . PASS 0.3533000 0.1427000 0.1181000 0.1640000 0.2342000 0.2155000 35.8 70.0 88 1000.00 1.36 45.45 0 45.45 0/1
chr1 226027067 . GGT G . PASS . . . . . . 35.38 70.0 201 1000.00 5.90 20.90 0 20.90 0/1
chr1 226027196 rs2671266 C T . PASS 0.1082000 0.0591000 0.1101000 0.0944000 0.2597000 0.1286000 37.0 70.0 20 157.95 0.00 30.00 0 30.00 0/1
chr1 226032229 rs1051741 C T . PASS 0.1051000 0.0591000 0.1141000 0.0895000 0.2536000 0.1264000 36.29 70.0 109 1000.00 2.02 62.39 0 62.39 0/1
chr1 226034909 rs41441645 G A . PASS 0.0030000 0.0029000 0.0863000 0.0119000 0.0082000 0.0226000 35.86 69.52 85 1000.00 3.42 49.41 0 49.41 0/1
chr1 226036309 rs360063 A G . PASS 0.8260000 0.5836000 0.6935000 0.5765000 0.7209000 0.6951000 37.0 70.0 20 325.04 20.00 50.00 0 50.00 0/1
chr1 226044489 rs60955535 G GC . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.48 70.0 21 814.09 0.00 100.00 0 100.00 1/1
chr1 226044766 rs9919303 G A . PASS 0.5492000 0.3141000 0.5179000 0.2624000 0.4734000 0.4379000 36.29 70.0 43 536.20 5.47 39.53 0 39.53 0/1
chr1 226048744 rs34700682 CA C . PASS 0.1740000 0.4222000 0.3194000 0.4324000 0.2802000 0.3103000 36.7 70.0 58 612.79 0.69 34.48 0 34.48 0/1
chr1 226054714 rs2292563 G A . PASS 0.6589000 0.3329000 0.5169000 0.2624000 0.4755000 0.4696000 37.0 70.0 14 343.09 8.57 71.43 0 71.43 0/1
chr1 226055595 rs2292564 G A . PASS 0.5189000 0.3127000 0.5188000 0.2624000 0.4744000 0.4301000 35.78 70.0 129 1000.00 1.89 45.74 0 45.74 0/1
chr1 226065191 rs72754986 G C . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 36.22 69.57 107 1000.00 5.85 42.99 0 42.99 0/1
chr1 226074563 rs360057 T G . PASS 0.1407000 0.3415000 0.2073000 0.3946000 0.2526000 0.2548000 36.81 68.68 127 1000.00 5.57 49.61 0 49.61 0/1
chr1 226075410 rs57114136 GC G . PASS 0.1369000 0.3415000 0.1696000 0.3956000 0.2526000 0.2464000 35.47 68.69 50 1000.00 2.29 98.00 0 98.00 1/1
chr1 226110170 rs72754998 C A . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 70.0 12 261.42 8.33 66.67 0 66.67 0/1
chr1 226125543 rs60825997 G GA . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.52 69.72 69 1000.00 0.94 98.55 0 98.55 1/1
chr1 226125617 rs3007716 A G . PASS 0.0658000 0.1326000 0.0724000 0.2247000 0.1953000 0.1336000 37.0 70.0 14 343.09 0.00 71.43 0 71.43 0/1
chr1 226127443 rs74578461 G C . PASS 0.3669000 0.3602000 0.1518000 0.3459000 0.2301000 0.2917000 36.72 69.27 170 1000.00 1.29 50.59 0 50.59 0/1
chr1 226180026 rs72757014 C T . PASS 0.0053000 0.0375000 0.0000000 0.1153000 0.0409000 0.0377000 35.91 70.0 29 327.70 18.81 37.93 0 37.93 0/1
chr1 226214882 rs6682659 A G . PASS 0.5908000 0.6758000 0.4940000 0.5706000 0.6063000 0.5821000 36.81 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 226252232 rs2036870 C T . PASS 0.9402000 0.9914000 1.0000000 0.9990000 0.9990000 0.9826000 35.29 70.0 21 805.66 0.00 100.00 0 100.00 1/1
chr1 226253316 rs1849032 G T . PASS 0.9402000 0.9914000 1.0000000 0.9990000 0.9990000 0.9826000 34.43 70.0 14 509.12 0.00 100.00 0 100.00 1/1
chr1 226334578 rs1219666 G A . PASS 0.9985000 1.0000000 1.0000000 1.0000000 1.0000000 0.9996000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 226352498 rs2306120 T G . PASS 0.6150000 0.6383000 0.4504000 0.6103000 0.3436000 0.5311000 36.68 70.0 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 226353521 rs2306121 T A . PASS 0.5439000 0.4179000 0.3700000 0.4245000 0.2648000 0.4129000 34.82 70.0 33 299.51 18.18 33.33 0 33.33 0/1
chr1 226411317 rs10915962 C T . PASS 0.5310000 0.6455000 0.6994000 0.6829000 0.5665000 0.6182000 37.0 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 226438449 rs6678137 T C . PASS 0.8275000 0.8559000 0.9593000 0.8678000 0.7894000 0.8586000 36.4 70.0 20 787.91 0.00 100.00 0 100.00 1/1
chr1 226474132 rs10799347 G A . PASS 0.7542000 0.6657000 0.7450000 0.6799000 0.6636000 0.7075000 36.53 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 226485327 rs11390947,rs11397221 A AT . PASS 0.5658000 0.6527000 0.7123000 0.6819000 0.5757000 0.6326000 36.2 70.0 14 509.69 0.00 100.00 0 100.00 1/1
chr1 226488826 rs11577454 A G . PASS 0.1490000 0.2709000 0.2123000 0.2893000 0.3078000 0.2378000 37.0 70.0 35 614.05 2.86 51.43 0 51.43 0/1
chr1 226555302 rs1136410 A G . PASS 0.0371000 0.3516000 0.4365000 0.1541000 0.1002000 0.1969000 36.6 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 226556094 rs1805400 T C . PASS 0.9501000 0.9971000 1.0000000 1.0000000 1.0000000 0.9864000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 226570767 rs2230484 G A . PASS 0.0000000 0.0043000 0.0000000 0.0070000 0.0000000 0.0019968 35.83 70.0 89 1000.00 3.18 46.07 0 46.07 0/1
chr1 226573364 rs1805414 A G . PASS 0.5582000 0.5029000 0.7946000 0.3290000 0.3763000 0.5166000 37.0 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 226576270 rs2255403 A G . PASS 0.1415000 0.3559000 0.4841000 0.1541000 0.1902000 0.2522000 37.0 70.0 18 716.39 0.00 100.00 0 100.00 1/1
chr1 226578047 rs1805411 G T . PASS 0.0870000 0.3530000 0.4365000 0.1541000 0.1002000 0.2103000 37.0 70.0 17 670.47 0.00 100.00 0 100.00 1/1
chr1 226578099 rs1805403 T C . PASS 0.9713000 0.8127000 0.9315000 0.7734000 0.7464000 0.8576000 36.56 70.0 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 226589958 rs1805404 G A . PASS 0.1150000 0.3573000 0.4365000 0.1541000 0.1002000 0.2183000 37.0 69.97 71 1000.00 0.00 100.00 0 100.00 1/1
chr1 226595647 rs907187 C G . PASS 0.0371000 0.3530000 0.4375000 0.1630000 0.1002000 0.1991000 35.93 69.7 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 226825341 rs2236604 G A . PASS 0.2148000 0.1571000 0.2540000 0.1412000 0.1595000 0.1891000 36.6 70.0 48 1000.00 9.17 62.50 0 62.50 0/1
chr1 226923505 rs708776 G T . PASS 0.9962000 0.9553000 1.0000000 0.9423000 0.9928000 0.9798000 36.31 70.0 84 1000.00 0.00 41.67 0 41.67 0/1
chr1 226923938 rs6667260 A C . PASS 0.6067000 0.6599000 0.6786000 0.5258000 0.5971000 0.6104000 36.68 70.0 68 1000.00 8.11 54.41 0 54.41 0/1
chr1 226924642 rs3754415 C T . PASS 0.1694000 0.2032000 0.3393000 0.2127000 0.2209000 0.2270000 37.0 69.11 93 1000.00 20.50 48.39 0 48.39 0/1
chr1 227069677 rs11405 T C . PASS 0.8313000 0.7176000 0.5427000 0.8022000 0.7495000 0.7356000 37.0 70.0 69 1000.00 7.42 49.28 0 49.28 0/1
chr1 227069737 rs6759 C T . PASS 0.3646000 0.4827000 0.3859000 0.5934000 0.4264000 0.4433000 36.5 70.0 52 801.50 7.69 46.15 0 46.15 0/1
chr1 227071364 rs1295643 G A . PASS 0.3646000 0.4827000 0.3859000 0.5934000 0.4264000 0.4433000 35.0 70.0 16 157.99 37.50 37.50 0 37.50 0/1
chr1 227071377 rs1295644 T C . PASS 0.5507000 0.6254000 0.4911000 0.7982000 0.6820000 0.6244000 34.6 70.0 19 107.19 35.79 26.32 0 26.32 0/1
chr1 227071525 rs1046240 C T . PASS 0.3646000 0.4827000 0.3859000 0.5934000 0.4264000 0.4433000 36.74 69.13 78 1000.00 1.00 58.97 0 58.97 0/1
chr1 227073144 rs72758667 A G . PASS 0.0000000 0.0000000 0.0000000 0.0020000 0.0000000 0.0003994 37.0 70.0 20 325.03 20.00 50.00 0 50.00 0/1
chr1 227073410 rs2236910 G C . PASS 0.8313000 0.7176000 0.5427000 0.8022000 0.7495000 0.7356000 37.0 70.0 33 448.84 5.19 42.42 0 42.42 0/1
chr1 227078955 rs2802267 T C . PASS 0.7753000 0.7104000 0.5565000 0.8022000 0.7505000 0.7228000 37.0 70.0 23 524.85 2.32 65.22 0 65.22 0/1
chr1 227081622 rs10753428 A G . PASS 0.7988000 0.6556000 0.4931000 0.8032000 0.7055000 0.7001000 36.08 70.0 26 420.27 7.69 50.00 0 50.00 0/1
chr1 227081850 rs2855562 G A . PASS 0.4803000 0.6297000 0.6052000 0.6223000 0.5798000 0.5741000 36.7 69.5 71 1000.00 0.42 56.34 0 56.34 0/1
chr1 227149203 rs11549708 G A . PASS 0.0310000 0.1110000 0.0010000 0.2187000 0.0665000 0.0807000 36.26 70.0 133 1000.00 3.49 60.90 0 60.90 0/1
chr1 227165097 rs3806263 G A . PASS 0.3434000 0.2594000 0.2788000 0.2137000 0.1892000 0.2626000 37.0 70.0 28 342.73 5.84 39.29 0 39.29 0/1
chr1 227171584 rs3215919 GT G . PASS 0.2776000 0.2709000 0.1359000 0.4314000 0.1912000 0.2622000 34.96 69.64 101 1000.00 0.18 55.45 0 55.45 0/1
chr1 227171736 rs149374145 G GT . PASS . . . . . . 37.0 70.0 32 231.56 31.25 28.12 1 28.12 0/1
chr1 227171738 rs377335668 G T . PASS . . . . . . 35.0 70.0 32 305.53 11.36 34.38 1 37.50 0/1
chr1 227171739 rs1574185 G C . PASS . . . . . . 35.36 70.0 35 740.96 3.64 62.86 1 62.86 0/1
chr1 227171958 rs7530213 G C . PASS 0.1233000 0.2320000 0.0962000 0.3062000 0.1166000 0.1683000 36.73 70.0 116 1000.00 10.65 38.79 0 38.79 0/1
chr1 227172290 rs12593 C T . PASS 0.1649000 0.2695000 0.1716000 0.4274000 0.1912000 0.2386000 36.33 70.0 73 1000.00 1.29 49.32 0 49.32 0/1
chr1 227172518 rs1317490 C T . PASS 0.0809000 0.1282000 0.0030000 0.2565000 0.1094000 0.1126000 37.0 70.0 12 98.49 16.67 33.33 0 33.33 0/1
chr1 227172935 rs2297416 C G . PASS 0.2572000 0.2839000 0.1577000 0.4414000 0.1922000 0.2652000 35.8 70.0 23 299.84 6.96 43.48 0 43.48 0/1
chr1 227174122 rs41303131 C G . PASS 0.0651000 0.1354000 0.0030000 0.2714000 0.1155000 0.1136000 37.0 70.0 14 88.32 42.86 28.57 0 28.57 0/1
chr1 227174145 rs7552783 T C . PASS 0.4221000 0.3256000 0.2133000 0.4970000 0.2679000 0.3516000 37.0 70.0 24 145.91 25.00 25.00 0 25.00 0/1
chr1 227174210 rs3738725 T C . PASS 0.2882000 0.3127000 0.2133000 0.4940000 0.2679000 0.3139000 36.5 70.0 75 732.27 17.67 32.00 0 32.00 0/1
chr1 227181923 rs3795451 C T . PASS 0.2700000 0.2853000 0.2123000 0.4423000 0.2188000 0.2851000 33.4 70.0 24 276.97 18.33 41.67 0 41.67 0/1
chr1 227182033 rs2802269 G A . PASS 0.9259000 0.8718000 0.8869000 0.8738000 0.8139000 0.8782000 36.53 70.0 102 1000.00 0.00 100.00 0 100.00 1/1
chr1 227182179 rs61833999 C T . PASS 0.0484000 0.1124000 0.0030000 0.2197000 0.0654000 0.0859000 37.0 70.0 11 143.27 14.55 45.45 0 45.45 0/1
chr1 227182575 rs1045247 A G . PASS 0.9803000 0.8372000 0.8274000 0.8260000 0.6125000 0.8269000 36.67 70.0 109 1000.00 0.00 100.00 0 100.00 1/1
chr1 227206038 rs1953012 T C . PASS 0.4221000 0.4467000 0.3810000 0.5924000 0.5992000 0.4860000 36.38 70.0 99 1000.00 1.36 58.59 0 58.59 0/1
chr1 227210888 rs11578479 A T . PASS 0.3411000 0.2939000 0.1478000 0.4374000 0.1933000 0.2861000 37.0 67.5 15 252.39 3.33 53.33 0 53.33 0/1
chr1 227218069 rs5781458 C CAT . PASS 0.6566000 0.7752000 0.8681000 0.7276000 0.7638000 0.7508000 37.0 70.0 23 133.34 13.04 26.09 0 26.09 0/1
chr1 227222515 rs61703280,rs113874316,rs112562427 G GACAA . PASS 1.0000000 0.9986000 1.0000000 0.9980000 0.9796000 0.9954000 36.49 69.62 50 1000.00 2.53 98.00 0 98.00 1/1
chr1 227227740 rs12026688 A C . PASS 0.2292000 0.2579000 0.2401000 0.1918000 0.2086000 0.2238000 37.0 70.0 21 150.80 14.29 28.57 0 28.57 0/1
chr1 227288655 rs2104863 G A . PASS 0.8366000 0.8343000 0.8720000 0.8111000 0.8190000 0.8349000 37.0 70.0 10 313.51 4.44 90.00 0 90.00 0/1
chr1 227330759 rs12139502 A G . PASS 0.6286000 0.7305000 0.7530000 0.7376000 0.8967000 0.7420000 36.05 70.0 39 1000.00 1.75 97.44 0 97.44 1/1
chr1 227330783 rs58442036 G C . PASS 0.1490000 0.1671000 0.1290000 0.1889000 0.1810000 0.1617000 34.75 70.0 25 520.43 3.00 64.00 0 64.00 0/1
chr1 227381373 rs3768436 G T . PASS 0.6051000 0.6383000 0.6577000 0.7187000 0.7403000 0.6695000 35.8 70.0 10 366.07 0.00 100.00 0 100.00 1/1
chr1 227381674 rs35780410 TA T . PASS 0.2171000 0.2550000 0.2450000 0.1918000 0.2117000 0.2218000 36.45 70.0 23 342.21 12.65 47.83 0 47.83 0/1
chr1 227387143 rs3768435 A G . PASS 0.6051000 0.6383000 0.6577000 0.7187000 0.7403000 0.6695000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 227387361 rs3768434 A G . PASS 0.9168000 0.7291000 0.6577000 0.8519000 0.7822000 0.7993000 37.0 70.0 25 1000.00 0.00 100.00 0 100.00 1/1
chr1 227518041 rs4233226 C T . PASS 0.4334000 0.4625000 0.4881000 0.3419000 0.4141000 0.4263000 36.29 70.0 62 1000.00 2.66 54.84 0 54.84 0/1
chr1 227598446 rs3014290 T C . PASS 0.7307000 0.7493000 0.8075000 0.8738000 0.7863000 0.7883000 36.25 70.0 16 620.83 0.00 100.00 0 100.00 1/1
chr1 227618420 rs6426453 G C . PASS 0.2020000 0.1167000 0.1706000 0.1789000 0.1207000 0.1633000 37.0 70.0 11 97.35 27.27 36.36 0 36.36 0/1
chr1 227618550 rs6667621 C G . PASS . . . . . . 37.0 70.0 13 503.38 0.00 100.00 0 100.00 1/1
chr1 227622011 rs7546172 A G . PASS 0.4402000 0.4942000 0.3889000 0.4145000 0.5317000 0.4501000 37.0 69.75 42 843.60 5.95 57.14 0 57.14 0/1
chr1 227680783 rs2814075 T C . PASS . . . . . . 37.0 63.0 18 716.39 0.00 100.00 0 100.00 1/1
chr1 227680835 rs2814074 C T . PASS . . . . . . 37.0 63.0 16 295.30 20.83 56.25 0 56.25 0/1
chr1 227681475 rs4653844 T C . PASS 0.6104000 0.7190000 0.7540000 0.7068000 0.6431000 0.6801000 36.61 60.87 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 227681572 . CAG CCC . PASS . . . . . . 37.0 65.12 17 246.37 4.41 47.06 0 47.06 0/1
chr1 227681581 rs76425427 G A . PASS . . . . . . 37.0 63.83 11 185.04 3.03 54.55 0 54.55 0/1
chr1 227681584 . ACC ATT . PASS . . . . . . 35.8 63.6 10 134.27 0.00 50.00 0 50.00 0/1
chr1 227694384 rs137940229 G C . PASS 0.4380000 0.5346000 0.6131000 0.4712000 0.4376000 0.4932000 35.8 50.65 20 771.75 0.00 100.00 0 100.00 1/1
chr1 227695923 rs35278598 CGG CCA . PASS . . . . . . 37.0 60.4 10 378.08 0.00 100.00 0 100.00 1/1
chr1 227696002 rs2018828 A G . PASS 0.3268000 0.5749000 0.4127000 0.6083000 0.4642000 0.4619000 37.0 60.3 10 382.23 0.00 100.00 0 100.00 1/1
chr1 227923081 rs7419238 G A . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.35 70.0 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 228003649 rs45576341 C T . PASS 0.0522000 0.1167000 0.2629000 0.0278000 0.0092000 0.0903000 36.54 70.0 49 894.06 2.51 53.06 0 53.06 0/1
chr1 228003746 rs59917153 C T . PASS 0.0522000 0.1167000 0.2609000 0.0278000 0.0092000 0.0899000 35.59 70.0 35 548.26 21.18 48.57 0 48.57 0/1
chr1 228004080 rs72750297 C T . PASS 0.0620000 0.1182000 0.2629000 0.0278000 0.0092000 0.0931000 37.0 70.0 19 286.28 11.70 47.37 0 47.37 0/1
chr1 228033197 rs9426581 A G . PASS 0.7738000 0.7637000 0.6915000 0.8439000 0.9141000 0.7973000 36.43 70.0 109 1000.00 8.15 57.80 0 57.80 0/1
chr1 228112121 rs4653889 A G . PASS 0.6861000 0.5576000 0.3899000 0.4801000 0.4243000 0.5162000 37.0 70.0 120 1000.00 10.48 35.00 0 35.00 0/1
chr1 228113163 rs3795768 A G . PASS 0.8752000 0.6499000 0.6091000 0.6700000 0.5603000 0.6877000 36.88 70.0 103 1000.00 0.00 100.00 0 100.00 1/1
chr1 228199902 rs708117 G A . PASS 0.3616000 0.4481000 0.6042000 0.5696000 0.6196000 0.5146000 36.38 70.0 125 1000.00 0.30 46.40 0 46.40 0/1
chr1 228284991 rs2070960 C T . PASS 0.0681000 0.0893000 0.1895000 0.0596000 0.0736000 0.0948000 36.43 70.0 46 694.25 2.90 45.65 0 45.65 0/1
chr1 228289976 rs2295995 A G . PASS 0.2542000 0.1441000 0.1538000 0.0696000 0.0736000 0.1464000 36.37 70.0 55 583.62 6.32 34.55 0 34.55 0/1
chr1 228294300 rs12564763 T C . PASS 0.4107000 0.5994000 0.6081000 0.6362000 0.7096000 0.5803000 35.29 70.0 12 211.79 0.00 58.33 0 58.33 0/1
chr1 228353651 rs55873785 G C . PASS 0.1536000 0.3357000 0.3730000 0.4165000 0.5644000 0.3560000 37.0 70.0 107 1000.00 8.25 38.32 0 38.32 0/1
chr1 228362682 rs2298014 G A . PASS 0.0371000 0.2666000 0.0546000 0.3290000 0.1697000 0.1569000 36.72 70.0 80 1000.00 4.48 53.75 0 53.75 0/1
chr1 228399482 rs11804508 C G . PASS 0.6815000 0.6427000 0.8313000 0.6362000 0.8037000 0.7210000 36.69 70.0 136 1000.00 1.85 57.35 0 57.35 0/1
chr1 228399766 rs55971985 T C . PASS 0.7057000 0.6441000 0.8244000 0.6372000 0.8027000 0.7262000 35.88 70.0 65 1000.00 1.54 49.23 0 49.23 0/1
chr1 228402047 rs1620111 A G . PASS 0.6808000 0.6427000 0.8244000 0.6372000 0.8047000 0.7198000 36.68 70.0 132 1000.00 1.31 56.06 0 56.06 0/1
chr1 228402121 rs1771487 A G . PASS 0.6815000 0.6427000 0.8244000 0.6362000 0.8037000 0.7196000 36.71 70.0 151 1000.00 1.71 54.30 0 54.30 0/1
chr1 228402283 rs1771486 C G . PASS 0.6982000 0.9049000 0.8790000 0.9642000 0.9581000 0.8674000 37.0 70.0 13 503.38 0.00 100.00 0 100.00 1/1
chr1 228402303 rs72757833 C T . PASS 0.0061000 0.0086000 0.0010000 0.0308000 0.0041000 0.0083866 37.0 70.0 13 304.33 17.09 69.23 0 69.23 0/1
chr1 228402508 rs2776853 C T . PASS 0.3086000 0.3530000 0.1706000 0.3618000 0.1963000 0.2758000 36.56 70.0 109 1000.00 0.95 49.54 0 49.54 0/1
chr1 228404668 rs3795777 T C . PASS 0.3616000 0.3473000 0.3502000 0.3688000 0.2474000 0.3365000 36.76 70.0 81 1000.00 0.15 60.49 0 60.49 0/1
chr1 228407010 rs1757158 C T . PASS 0.3427000 0.3545000 0.1756000 0.3579000 0.1973000 0.2853000 36.41 70.0 69 1000.00 5.73 59.42 0 59.42 0/1
chr1 228407260 rs1771484 G A . PASS 0.3147000 0.3487000 0.1746000 0.3588000 0.1973000 0.2772000 37.0 70.0 95 1000.00 0.97 56.84 0 56.84 0/1
chr1 228412106 rs1771482 T C . PASS 0.5885000 0.4020000 0.3839000 0.3658000 0.2577000 0.4121000 37.0 70.0 24 438.31 7.69 54.17 0 54.17 0/1
chr1 228412226 . GTG GCA . PASS . . . . . . 37.0 70.0 114 1000.00 7.42 34.21 0 34.21 0/1
chr1 228412308 rs1757152 G A . PASS 0.5885000 0.4020000 0.3839000 0.3678000 0.2577000 0.4125000 35.67 70.0 95 1000.00 10.06 37.89 0 37.89 0/1
chr1 228431095 rs1771455 A G . PASS 0.7095000 0.6542000 0.5992000 0.6412000 0.4571000 0.6166000 36.66 69.43 77 1000.00 18.18 45.45 0 45.45 0/1
chr1 228431930 rs10916293 C T . PASS 0.7110000 0.6527000 0.5982000 0.6412000 0.4581000 0.6168000 36.29 68.76 27 584.35 1.31 62.96 0 62.96 0/1
chr1 228433217 rs2487384 A G . PASS 0.7095000 0.6542000 0.5992000 0.6412000 0.4571000 0.6166000 36.79 69.68 111 1000.00 6.16 51.35 0 51.35 0/1
chr1 228434395 rs7517088 T C . PASS 0.7133000 0.6542000 0.5992000 0.6412000 0.4571000 0.6176000 37.0 70.0 60 1000.00 6.67 50.00 0 50.00 0/1
chr1 228434467 rs7517108 T C . PASS 0.8480000 0.6902000 0.6151000 0.6421000 0.4622000 0.6625000 37.0 70.0 46 956.87 4.19 58.70 0 58.70 0/1
chr1 228437603 rs6426494 T C . PASS 0.8540000 0.6873000 0.6151000 0.6412000 0.4632000 0.6637000 37.0 70.0 14 217.78 0.00 50.00 0 50.00 0/1
chr1 228444297 rs7532141 T G . PASS 0.0620000 0.2651000 0.0575000 0.3231000 0.1544000 0.1597000 36.0 70.0 15 407.46 0.00 80.00 0 80.00 0/1
chr1 228444318 rs7532144 T G . PASS 0.7133000 0.6513000 0.5992000 0.6402000 0.4571000 0.6170000 36.43 70.0 25 753.30 4.19 84.00 0 84.00 0/1
chr1 228444565 rs7532342 T A . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.42 69.86 185 1000.00 0.00 100.00 0 100.00 1/1
chr1 228444741 rs3795780 C T . PASS 0.7133000 0.6513000 0.5992000 0.6402000 0.4571000 0.6170000 37.0 70.0 17 375.83 0.00 64.71 0 64.71 0/1
chr1 228447513 rs7525075 T G . PASS 0.3601000 0.3761000 0.1915000 0.3569000 0.2025000 0.2969000 37.0 70.0 55 842.10 7.27 45.45 0 45.45 0/1
chr1 228447519 rs7525078 T A . PASS 0.3601000 0.3761000 0.1915000 0.3569000 0.2025000 0.2969000 36.04 70.0 52 827.10 8.46 48.08 0 48.08 0/1
chr1 228452016 rs185523702 G C . PASS 0.0008000 0.0086000 0.0000000 0.0119000 0.0010000 0.0039936 36.32 69.92 154 1000.00 8.10 46.10 0 46.10 0/1
chr1 228456147 rs878388 T C . PASS 0.8510000 0.6974000 0.6131000 0.6710000 0.4693000 0.6711000 37.0 70.0 13 95.48 0.00 30.77 0 30.77 0/1
chr1 228461129 rs1188724 A G . PASS 0.8442000 0.6974000 0.7500000 0.6630000 0.4601000 0.6935000 36.27 70.0 66 1000.00 6.06 50.00 0 50.00 0/1
chr1 228461408 rs11398292 A AG . PASS . . . . . . 36.41 70.0 56 1000.00 0.00 100.00 0 100.00 1/1
chr1 228464248 rs1188721 T G . PASS 0.8495000 0.7003000 0.7500000 0.6640000 0.4601000 0.6955000 36.66 69.15 134 1000.00 3.72 52.99 0 52.99 0/1
chr1 228464276 rs1188722 T C . PASS 0.7330000 0.6931000 0.7500000 0.6630000 0.4601000 0.6635000 36.44 69.53 77 1000.00 7.19 55.84 0 55.84 0/1
chr1 228464303 rs75280352 G T . PASS 0.0008000 0.0101000 0.0000000 0.0139000 0.0010000 0.0045927 36.6 70.0 48 1000.00 15.00 62.50 0 62.50 0/1
chr1 228464842 rs936885 C G . PASS 0.8487000 0.7017000 0.7490000 0.6590000 0.4571000 0.6937000 36.57 70.0 72 904.22 15.48 38.89 0 38.89 0/1
chr1 228465346 rs493945 A G . PASS 0.3585000 0.3617000 0.3780000 0.3638000 0.1851000 0.3301000 36.71 70.0 87 1000.00 8.75 47.13 0 47.13 0/1
chr1 228465370 rs867599 T G . PASS 0.7542000 0.6988000 0.7440000 0.6700000 0.4571000 0.6695000 37.0 70.0 84 1000.00 7.14 42.86 0 42.86 0/1
chr1 228465403 rs13376694 G T . PASS 0.0257000 0.0231000 0.3413000 0.0507000 0.0716000 0.1028000 35.84 70.0 71 1000.00 0.64 43.66 0 43.66 0/1
chr1 228465674 rs2307995 C CAAG . PASS 0.7292000 0.6888000 0.4306000 0.6392000 0.3804000 0.5773000 36.5 70.0 37 495.89 8.45 43.24 0 43.24 0/1
chr1 228468566 rs4653934 A G . PASS 0.1876000 0.3545000 0.1845000 0.3489000 0.1738000 0.2398000 37.0 70.0 32 163.61 1.79 21.88 0 21.88 0/1
chr1 228471046 rs41303079 C T . PASS 0.0446000 0.2594000 0.0565000 0.3171000 0.1258000 0.1474000 36.5 70.0 40 837.61 0.00 60.00 0 60.00 0/1
chr1 228471379 rs56168609 G C . PASS 0.1989000 0.3242000 0.1528000 0.3499000 0.1626000 0.2302000 36.08 70.0 72 808.68 12.39 36.11 0 36.11 0/1
chr1 228480282 rs1150908 A G . PASS 0.8669000 0.7147000 0.7490000 0.6720000 0.4366000 0.6989000 37.0 70.0 142 1000.00 1.49 49.30 0 49.30 0/1
chr1 228480964 rs10158357 A G . PASS 0.3956000 0.3818000 0.5030000 0.3787000 0.2342000 0.3804000 37.0 70.0 10 146.28 0.00 50.00 0 50.00 0/1
chr1 228482010 rs449133 C T . PASS 0.4720000 0.4179000 0.2470000 0.4821000 0.2710000 0.3820000 36.7 70.0 140 1000.00 1.59 56.43 0 56.43 0/1
chr1 228492044 rs1150910 G A . PASS 0.4221000 0.4121000 0.2490000 0.4861000 0.2710000 0.3692000 36.56 70.0 59 905.74 0.13 45.76 0 45.76 0/1
chr1 228494382 rs1150911 T G . PASS 0.4713000 0.4207000 0.4970000 0.4861000 0.2710000 0.3834000 37.0 70.0 33 824.78 5.53 69.70 0 69.70 0/1
chr1 228494790 rs435776 G A . PASS 0.0605000 0.3775000 0.2490000 0.4841000 0.2710000 0.2686000 36.64 70.0 88 1000.00 10.61 37.50 0 37.50 0/1
chr1 228497053 rs379620 A G . PASS 0.8661000 0.7147000 0.7460000 0.6730000 0.4387000 0.6987000 36.45 70.0 42 748.06 0.43 52.38 0 52.38 0/1
chr1 228503677 rs1150912 A G . PASS 0.8722000 0.7147000 0.7480000 0.6740000 0.4387000 0.7009000 36.48 70.0 89 1000.00 3.08 51.69 0 51.69 0/1
chr1 228504472 rs1188732 T C . PASS 0.8661000 0.7147000 0.7480000 0.6740000 0.4387000 0.6993000 36.69 70.0 159 1000.00 4.31 49.06 0 49.06 0/1
chr1 228504670 rs11810627 C T . PASS 0.2791000 0.4006000 0.2490000 0.4861000 0.2730000 0.3303000 36.65 70.0 151 1000.00 9.64 45.03 0 45.03 0/1
chr1 228504701 rs111792077 G GCTCC . PASS 0.8654000 0.7147000 0.7480000 0.6740000 0.4387000 0.6991000 36.67 70.0 137 1000.00 3.64 41.61 0 41.61 0/1
chr1 228505668 rs1188729 C G . PASS 0.8661000 0.7147000 0.7480000 0.6740000 0.4387000 0.6993000 36.5 70.0 155 1000.00 8.28 46.45 0 46.45 0/1
chr1 228505699 rs1188728 T C . PASS 0.8888000 0.7190000 0.7480000 0.6740000 0.4387000 0.7059000 36.72 70.0 116 1000.00 2.85 37.07 0 37.07 0/1
chr1 228509427 rs373610 A G . PASS 0.8684000 0.6758000 0.7044000 0.6740000 0.4335000 0.6847000 36.69 70.0 133 1000.00 7.56 58.65 0 58.65 0/1
chr1 228520880 rs416564 C T . PASS 0.4433000 0.3890000 0.2490000 0.4215000 0.1851000 0.3419000 35.86 70.0 58 646.12 0.49 36.21 0 36.21 0/1
chr1 228520973 rs369909 C G . PASS 0.4183000 0.3847000 0.2490000 0.4205000 0.1881000 0.3351000 36.73 70.0 97 1000.00 8.86 45.36 0 45.36 0/1
chr1 228523005 rs60787858 T TG . PASS 0.4871000 0.3631000 0.5734000 0.4990000 0.3834000 0.4694000 34.33 70.0 31 210.57 1.43 29.03 0 29.03 0/1
chr1 228523442 rs1684868 T C . PASS 0.4985000 0.4280000 0.5655000 0.5129000 0.3620000 0.4784000 37.0 69.05 36 736.35 1.59 58.33 0 58.33 0/1
chr1 228523446 . CTG CCG . PASS . . . . . . 36.37 68.95 38 777.84 2.63 42.11 0 100.00 0/1
chr1 228523446 . CTG CCA . PASS . . . . . . 36.37 68.95 38 777.84 1.91 57.89 0 100.00 0/1
chr1 228523618 rs1757160 G A . PASS 0.4834000 0.4265000 0.5655000 0.5129000 0.3620000 0.4742000 37.0 70.0 54 1000.00 3.47 59.26 0 59.26 0/1
chr1 228524919 rs3795807 G A . PASS 0.0575000 0.3458000 0.2500000 0.4185000 0.2178000 0.2400000 35.29 70.0 41 685.27 6.97 51.22 0 51.22 0/1
chr1 228524961 rs3795808 C A . PASS 0.0575000 0.3458000 0.2500000 0.4185000 0.2168000 0.2398000 36.54 70.0 57 865.83 10.12 45.61 0 45.61 0/1
chr1 228525627 rs1757127 C A . PASS 0.0575000 0.3458000 0.2500000 0.4185000 0.2188000 0.2402000 35.45 70.0 57 1000.00 0.34 54.39 0 54.39 0/1
chr1 228525898 rs1188717 C G . PASS 0.6672000 0.4654000 0.5962000 0.5199000 0.3753000 0.5383000 36.5 70.0 33 854.53 9.85 72.73 0 72.73 0/1
chr1 228526486 rs58480216 G A . PASS 0.0590000 0.2651000 0.2470000 0.4195000 0.2157000 0.2284000 36.2 70.0 26 503.82 3.08 57.69 0 57.69 0/1
chr1 228526665 rs505629 T C . PASS 0.5522000 0.4294000 0.5665000 0.5209000 0.3609000 0.4944000 36.39 70.0 92 1000.00 1.25 64.13 0 64.13 0/1
chr1 228526742 rs10634565 C CCACA . PASS . . . . . . 36.0 70.0 150 1000.00 0.31 26.00 0 76.00 0/1
chr1 228526742 . C CCA . PASS . . . . . . 35.29 70.0 150 1000.00 7.07 48.67 0 76.00 0/1
chr1 228528412 rs1150916 G A . PASS 0.4561000 0.3847000 0.2520000 0.4215000 0.2188000 0.3518000 36.45 70.0 67 672.80 1.49 32.84 0 32.84 0/1
chr1 228528563 rs1188710 C G . PASS 0.6679000 0.4654000 0.5942000 0.5229000 0.3753000 0.5387000 36.76 70.0 116 1000.00 2.13 43.97 0 43.97 0/1
chr1 228536557 rs1872740 G A . PASS 0.3306000 0.5346000 0.4028000 0.4781000 0.6288000 0.4613000 36.41 70.0 78 1000.00 6.82 52.56 0 52.56 0/1
chr1 228540542 rs6695278 G A . PASS 0.3306000 0.5360000 0.4028000 0.4781000 0.6288000 0.4615000 37.0 70.0 18 414.60 16.67 66.67 0 66.67 0/1
chr1 228547901 rs12035900 C T . PASS 0.1142000 0.3112000 0.2669000 0.3280000 0.5419000 0.2987000 36.55 70.0 96 1000.00 5.27 55.21 0 55.21 0/1
chr1 228556788 rs3738685 C T . PASS 0.1838000 0.3141000 0.2510000 0.3628000 0.5378000 0.3205000 37.0 70.0 12 265.57 0.00 66.67 0 66.67 0/1
chr1 228559967 rs72762066 C T . PASS 0.0000000 0.0072000 0.0000000 0.0159000 0.0041000 0.0049920 37.0 70.0 86 1000.00 0.00 50.00 0 50.00 0/1
chr1 228559994 rs500049 C T . PASS 0.7080000 0.3890000 0.5625000 0.5040000 0.6851000 0.5891000 36.73 70.0 95 1000.00 3.83 46.32 0 46.32 0/1
chr1 228560139 rs498382 A G . PASS 0.9962000 0.9640000 1.0000000 0.9066000 0.9949000 0.9742000 36.61 70.0 93 1000.00 0.00 100.00 0 100.00 1/1
chr1 228560700 rs512253 T C . PASS 0.9365000 0.6398000 0.7520000 0.5636000 0.8067000 0.7580000 37.0 70.0 83 929.05 4.32 34.94 0 34.94 0/1
chr1 228562350 rs72762068 T C . PASS 0.0008000 0.0101000 0.0000000 0.0149000 0.0031000 0.0051917 36.5 70.0 90 1000.00 3.89 53.33 0 53.33 0/1
chr1 228612838 rs2230656 G T . PASS 0.3116000 0.8977000 0.6895000 0.8847000 0.8558000 0.6903000 35.91 70.0 88 1000.00 0.00 100.00 0 100.00 1/1
chr1 228613052 rs1188474 T C . PASS 0.9349000 0.9568000 0.6954000 0.8907000 0.8599000 0.8662000 36.5 69.72 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 228644997 rs72763954 G A . PASS 0.0000000 0.0000000 0.0000000 0.0040000 0.0010000 0.0009984 37.0 70.0 11 143.27 0.00 45.45 0 45.45 0/1
chr1 228645063 rs10916317 A G . PASS 0.9463000 0.9337000 0.7044000 0.7942000 0.8517000 0.8468000 36.68 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 228681749 rs3795817 C T . PASS 0.1838000 0.6023000 0.4385000 0.5457000 0.6329000 0.4535000 37.0 70.0 15 591.07 0.00 100.00 0 100.00 1/1
chr1 228699477 rs6665115 T C . PASS 0.2958000 0.6412000 0.4444000 0.5905000 0.6524000 0.5024000 36.8 70.0 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 228871693 rs3738073 C T . PASS 0.0893000 0.0951000 0.0427000 0.1720000 0.2515000 0.1290000 36.66 70.0 91 1000.00 9.67 38.46 0 38.46 0/1
chr1 228886479 rs881298 G C . PASS 0.6543000 0.4611000 0.3740000 0.4115000 0.4571000 0.4838000 37.0 70.0 49 943.69 5.74 55.10 0 55.10 0/1
chr1 229200967 rs9426591 C A . PASS 0.5061000 0.5821000 0.5734000 0.5736000 0.5828000 0.5587000 36.87 70.0 90 1000.00 0.00 100.00 0 100.00 1/1
chr1 229200985 rs9426592 G A . PASS 0.3018000 0.4582000 0.2748000 0.4652000 0.4949000 0.3886000 36.27 70.0 110 1000.00 3.86 44.55 0 44.55 0/1
chr1 229407233 rs7519709 G C . PASS 0.4334000 0.5130000 0.4087000 0.4264000 0.3732000 0.4263000 35.0 70.0 18 147.81 0.00 33.33 0 33.33 0/1
chr1 229422193 rs237764 T C . PASS 0.7209000 0.6484000 0.4940000 0.6730000 0.4734000 0.6072000 36.04 70.0 25 984.75 0.00 100.00 0 100.00 1/1
chr1 229438828 rs237787 G A . PASS 0.7171000 0.6455000 0.4921000 0.6710000 0.4734000 0.6050000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 229461024 rs2282083 C T . PASS 0.2126000 0.5101000 0.3859000 0.4493000 0.3282000 0.3588000 35.15 70.0 49 858.04 2.51 53.06 0 53.06 0/1
chr1 229545573 rs871276 A G . PASS 0.4977000 0.5403000 0.3125000 0.4394000 0.4693000 0.4491000 37.0 70.0 62 1000.00 5.44 51.61 0 51.61 0/1
chr1 229568231 rs527621 T G . PASS 1.0000000 0.9971000 0.9990000 0.9990000 0.9990000 0.9990000 37.0 70.0 19 754.01 0.00 100.00 0 100.00 1/1
chr1 229657234 rs72751736 C A . PASS . . . . . . 37.0 70.0 27 353.64 24.24 40.74 0 55.56 0/1
chr1 229663064 rs140542677,rs113712941,rs55677147 GAGGAA G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.71 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 229667404 rs72751738 C G . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 36.33 70.0 97 1000.00 4.52 37.11 0 37.11 0/1
chr1 229730452 rs2295625 G A . PASS 0.0938000 0.2666000 0.3254000 0.4612000 0.4284000 0.3035000 35.71 69.29 53 941.54 1.48 52.83 0 52.83 0/1
chr1 229738170 rs3753886 T G . PASS 0.4887000 0.5447000 0.7639000 0.5179000 0.5706000 0.5737000 37.0 70.0 66 683.67 15.15 33.33 0 33.33 0/1
chr1 229738236 rs4925500 G A . PASS 0.9281000 0.7219000 0.9415000 0.7614000 0.7914000 0.8421000 37.0 70.0 64 741.63 6.11 35.94 0 39.06 0/1
chr1 229772693 rs3811473 T G . PASS 0.4796000 0.5432000 0.7649000 0.5189000 0.5726000 0.5719000 36.1 70.0 68 1000.00 5.00 58.82 0 58.82 0/1
chr1 229781744 rs2274994 T C . PASS 0.4788000 0.5432000 0.7639000 0.5179000 0.5716000 0.5711000 37.0 70.0 28 384.49 4.76 42.86 0 42.86 0/1
chr1 229783236 rs6587349 T C . PASS 0.9902000 0.9467000 1.0000000 0.8807000 0.9867000 0.9635000 37.0 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 229783240 rs2274995 T C . PASS 0.4433000 0.5418000 0.7639000 0.5179000 0.5716000 0.5615000 37.0 70.0 44 754.04 0.00 50.00 0 50.00 0/1
chr1 229787030 rs12142450 G A . PASS 0.0008000 0.0101000 0.0010000 0.0050000 0.0174000 0.0061901 36.2 70.0 51 1000.00 0.78 58.82 0 58.82 0/1
chr1 229790048 rs7521953 A G . PASS 0.5030000 0.5778000 0.8502000 0.5457000 0.5654000 0.6040000 36.55 70.0 150 1000.00 3.33 53.33 0 53.33 0/1
chr1 229795070 rs1048306 T G . PASS 0.5083000 0.5778000 0.8343000 0.5457000 0.5644000 0.6020000 36.37 70.0 29 657.72 6.17 65.52 0 65.52 0/1
chr1 229825051 rs6700582 T G . PASS 0.1747000 0.2507000 0.3641000 0.2594000 0.4039000 0.2851000 37.0 70.0 22 879.32 0.00 100.00 0 100.00 1/1
chr1 229841139 rs7535031 C T . PASS 0.5061000 0.4784000 0.8135000 0.3847000 0.5031000 0.5391000 36.25 70.0 16 620.83 0.00 100.00 0 100.00 1/1
chr1 229851411 rs12047405 G T . PASS 0.3759000 0.4121000 0.6815000 0.3260000 0.4877000 0.4543000 36.4 70.0 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 230232080 rs7529009 A G . PASS 0.5091000 0.4553000 0.4554000 0.4274000 0.5225000 0.4770000 36.32 70.0 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 230371883 rs3811488 G A . PASS 0.8699000 0.6758000 0.8978000 0.3986000 0.4990000 0.6815000 35.29 68.57 55 896.77 9.70 49.09 0 50.91 0/1
chr1 230384937 rs3748006 T C . PASS 0.1906000 0.3458000 0.5992000 0.0547000 0.1217000 0.2536000 36.08 70.0 85 1000.00 2.90 45.88 0 45.88 0/1
chr1 230385148 rs3748009 C T . PASS 0.6021000 0.6167000 0.7282000 0.3926000 0.3998000 0.5479000 37.0 70.0 10 104.51 0.00 40.00 0 40.00 0/1
chr1 230386174 rs2273965 C T . PASS 0.1120000 0.3429000 0.5992000 0.0537000 0.1217000 0.2322000 36.65 70.0 55 1000.00 1.28 61.82 0 61.82 0/1
chr1 230415025 rs6698963 A G . PASS 0.8911000 0.6556000 0.9474000 0.4553000 0.5869000 0.7228000 37.0 70.0 51 983.60 5.46 54.90 0 54.90 0/1
chr1 230415148 rs2273970 G A . PASS 0.0121000 0.1427000 0.3115000 0.0437000 0.0971000 0.1134000 36.39 70.0 111 1000.00 2.38 53.15 0 53.15 0/1
chr1 230530141 rs12406944 G A . PASS 0.0749000 0.4409000 0.4058000 0.3211000 0.4294000 0.3109000 35.8 70.0 20 313.03 10.00 50.00 0 50.00 0/1
chr1 230530229 rs35768939 A AGT . PASS 0.4584000 0.5130000 0.4256000 0.4066000 0.5276000 0.4625000 36.11 70.0 83 1000.00 10.84 65.06 0 65.06 0/1
chr1 230530315 rs12407923 C T . PASS 0.0741000 0.4409000 0.4077000 0.3211000 0.4305000 0.3113000 35.29 70.0 40 968.66 17.14 70.00 0 70.00 0/1
chr1 230561700 . G GC . PASS 0.9992000 1.0000000 1.0000000 1.0000000 1.0000000 0.9998000 36.72 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 230778491 rs4846864 G C . PASS 0.8343000 0.8141000 0.9504000 0.6610000 0.8364000 0.8205000 36.25 70.0 44 487.27 6.82 36.36 0 36.36 0/1
chr1 230796375 rs3736982 A C . PASS 0.3328000 0.2176000 0.4365000 0.1938000 0.4018000 0.3233000 37.0 70.0 10 100.37 0.00 40.00 0 40.00 0/1
chr1 230820763 rs150768186 C CACATT . PASS 0.1082000 0.2334000 0.1012000 0.4334000 0.3313000 0.2330000 36.25 70.0 23 156.10 13.66 30.43 0 30.43 0/1
chr1 230820780 rs3215851 TA T . PASS 0.3351000 0.2594000 0.2867000 0.3171000 0.3119000 0.3067000 35.88 70.0 29 561.76 8.11 58.62 0 58.62 0/1
chr1 230822903 rs2493147 C T . PASS 0.0045000 0.0591000 0.0010000 0.1034000 0.0204000 0.0343000 37.0 70.0 40 724.31 23.81 52.50 0 52.50 0/1
chr1 230825942 rs3000064 A G . PASS 0.0855000 0.2334000 0.1012000 0.4324000 0.3282000 0.2262000 35.29 70.0 24 456.06 16.67 58.33 0 58.33 0/1
chr1 230828987 rs2478534 C A . PASS 0.0855000 0.2320000 0.1012000 0.4304000 0.3282000 0.2256000 37.0 70.0 13 174.87 28.21 46.15 0 46.15 0/1
chr1 230841687 rs7080 T C . PASS 0.9962000 0.9510000 1.0000000 0.9155000 0.9867000 0.9726000 37.0 70.0 39 936.17 0.00 66.67 0 66.67 0/1
chr1 230845794 rs699 A G . PASS 0.9032000 0.6354000 0.8532000 0.4115000 0.6360000 0.7051000 36.23 70.0 93 1000.00 13.82 50.54 0 50.54 0/1
chr1 230883466 rs12143120 C T . PASS 0.3646000 0.4294000 0.3313000 0.4314000 0.2771000 0.3632000 36.62 70.0 62 1000.00 2.82 51.61 0 51.61 0/1
chr1 230883484 rs6690251 T C . PASS 0.4947000 0.5937000 0.3571000 0.7137000 0.3415000 0.4948000 36.73 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 230883499 rs6690254 T C . PASS 0.4947000 0.5922000 0.3571000 0.7147000 0.3425000 0.4950000 37.0 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 230891248 rs2493145 C T . PASS 0.3245000 0.4222000 0.1657000 0.3966000 0.2505000 0.3061000 37.0 68.18 19 369.81 9.57 57.89 0 57.89 0/1
chr1 230898494 rs2282319 C T . PASS 0.2716000 0.4452000 0.4385000 0.3797000 0.1789000 0.3329000 36.6 70.0 138 1000.00 3.77 43.48 0 43.48 0/1
chr1 230898615 rs3215985 G GA . PASS 0.1899000 0.3040000 0.2004000 0.3400000 0.1278000 0.2258000 37.0 70.0 39 586.42 5.13 46.15 0 46.15 0/1
chr1 230903234 rs11122590 A G . PASS 0.6331000 0.5259000 0.5506000 0.5278000 0.5031000 0.5551000 37.0 70.0 30 211.40 23.33 26.67 0 26.67 0/1
chr1 230903350 rs3828126 T C . PASS 0.1959000 0.2939000 0.1984000 0.3370000 0.1258000 0.2246000 37.0 69.41 68 1000.00 2.94 50.00 0 50.00 0/1
chr1 230904911 rs11122593 C T . PASS 0.0159000 0.2925000 0.1230000 0.3400000 0.0808000 0.1536000 36.33 70.0 30 617.09 11.11 60.00 0 60.00 0/1
chr1 231042732 rs3811502 T A . PASS 0.4198000 0.6556000 0.5446000 0.5338000 0.4969000 0.5156000 35.5 70.0 50 457.19 4.00 32.00 0 32.00 0/1
chr1 231044410 rs72762647 C T . PASS 0.0000000 0.0029000 0.0000000 0.0070000 0.0000000 0.0017971 37.0 70.0 21 405.56 7.14 57.14 0 57.14 0/1
chr1 231047310 rs10580953,rs10568287 TAC T . PASS . . . . . . 37.0 70.0 19 151.40 19.30 31.58 0 31.58 0/1
chr1 231057247 rs2275333 A T . PASS 0.1354000 0.1167000 0.3879000 0.1700000 0.2577000 0.2145000 37.0 70.0 25 389.37 11.33 48.00 0 48.00 0/1
chr1 231060736 rs3748775 T C . PASS 0.3351000 0.6297000 0.5565000 0.5070000 0.4898000 0.4852000 37.0 70.0 30 127.85 20.00 20.00 0 20.00 0/1
chr1 231064578 rs5781610,rs5781609 T TCTC . PASS 0.7020000 0.7767000 0.5903000 0.6680000 0.6053000 0.6641000 36.33 70.0 15 144.41 13.33 40.00 0 40.00 0/1
chr1 231064611 rs950029 G A . PASS 0.3343000 0.6297000 0.5556000 0.5070000 0.4888000 0.4846000 37.0 70.0 33 452.98 16.88 42.42 0 42.42 0/1
chr1 231067236 rs11122624 C T . PASS 0.3343000 0.6297000 0.5565000 0.5070000 0.4898000 0.4850000 37.0 70.0 37 566.25 17.81 45.95 0 45.95 0/1
chr1 231067318 rs11122625 G T . PASS 0.3321000 0.6297000 0.5565000 0.5070000 0.4898000 0.4844000 35.29 70.0 11 210.65 12.99 63.64 0 63.64 0/1
chr1 231114465 rs76376323 C G . PASS 0.1498000 0.1729000 0.3899000 0.2396000 0.3436000 0.2572000 36.56 70.0 52 922.66 6.98 51.92 0 51.92 0/1
chr1 231114595 rs11122174 C T . PASS 0.4183000 0.3631000 0.6458000 0.4274000 0.6892000 0.5112000 36.67 70.0 63 1000.00 2.38 57.14 0 57.14 0/1
chr1 231124055 rs10779804 T C . PASS 0.3139000 0.2320000 0.5129000 0.3469000 0.4959000 0.3848000 36.25 70.0 36 515.49 4.17 44.44 0 44.44 0/1
chr1 231157721 rs4311872 T C . PASS 0.3926000 0.5807000 0.3740000 0.5934000 0.2955000 0.4363000 37.0 70.0 42 551.21 15.13 40.48 0 40.48 0/1
chr1 231157729 rs4394639 A C . PASS 0.0575000 0.3559000 0.2669000 0.1998000 0.1033000 0.1785000 36.2 70.0 36 469.58 27.78 41.67 0 41.67 0/1
chr1 231176064 rs375041957 GC G . PASS . . . . . . 37.0 70.0 11 91.94 31.82 36.36 0 36.36 0/1
chr1 231203688 rs7549182 C T . PASS 0.6899000 0.5706000 0.4514000 0.6332000 0.4489000 0.5669000 35.82 69.61 92 1000.00 0.26 55.43 0 55.43 0/1
chr1 231203881 rs11122220 G T . PASS 0.1218000 0.3401000 0.2966000 0.3459000 0.3814000 0.2829000 37.0 70.0 13 133.10 0.00 38.46 0 38.46 0/1
chr1 231323140 rs6693752 T A . PASS 0.9115000 0.8833000 0.8859000 0.9314000 0.9315000 0.9103000 35.8 70.0 10 366.07 0.00 100.00 0 100.00 1/1
chr1 231376806 rs2274067 G C . PASS 0.0356000 0.2003000 0.0863000 0.0616000 0.1084000 0.0881000 36.48 70.0 59 734.50 20.04 38.98 0 38.98 0/1
chr1 231401204 rs6702011 T C . PASS 0.2738000 0.3718000 0.2411000 0.2306000 0.2515000 0.2678000 36.52 69.2 46 861.32 5.39 54.35 0 54.35 0/1
chr1 231401596 rs532226 T C . PASS 0.5242000 0.6196000 0.6300000 0.5189000 0.6145000 0.5753000 35.86 70.0 38 706.32 7.02 55.26 0 55.26 0/1
chr1 231401902 rs574553 G A . PASS 0.7012000 0.6254000 0.6339000 0.5318000 0.6268000 0.6286000 36.56 70.0 47 941.86 9.93 57.45 0 57.45 0/1
chr1 231471268 rs35468792 AT A . PASS 0.3185000 0.3343000 0.2877000 0.1720000 0.2331000 0.2684000 35.5 70.0 10 88.95 10.00 40.00 0 40.00 0/1
chr1 231486989 rs2474633 A C . PASS 0.5212000 0.5259000 0.5308000 0.6630000 0.5716000 0.5621000 33.0 70.0 22 123.77 24.24 27.27 0 27.27 0/1
chr1 231487017 rs2474634 T C . PASS 0.4070000 0.5216000 0.5308000 0.6630000 0.5716000 0.5314000 35.5 70.0 23 220.46 11.96 34.78 0 34.78 0/1
chr1 231488524 rs2437150 C T . PASS 0.4402000 0.5216000 0.5248000 0.6511000 0.5532000 0.5329000 36.27 70.0 53 1000.00 8.00 62.26 0 62.26 0/1
chr1 231502245 rs1435167 T A . PASS 0.3464000 0.4280000 0.4355000 0.5288000 0.4356000 0.4297000 37.0 70.0 35 651.67 3.31 54.29 0 54.29 0/1
chr1 231502310 rs1435166 T C . PASS 0.2057000 0.5086000 0.5278000 0.6511000 0.5603000 0.4712000 37.0 70.0 12 349.11 3.33 83.33 0 83.33 0/1
chr1 231535880 rs2491412 A T . PASS 0.5197000 0.5259000 0.5218000 0.6620000 0.5675000 0.5589000 35.96 70.0 64 707.45 1.90 35.94 0 35.94 0/1
chr1 231535883 rs2486728 T G . PASS 0.2625000 0.5159000 0.5218000 0.6620000 0.5675000 0.4896000 36.45 70.0 63 680.70 4.76 34.92 0 34.92 0/1
chr1 231697030 rs1982095 G A . PASS 0.6861000 0.5576000 0.3512000 0.3390000 0.3221000 0.4601000 35.4 70.0 31 476.77 10.32 48.39 0 48.39 0/1
chr1 231830295 rs3738401 G A . PASS 0.1172000 0.3329000 0.2173000 0.3390000 0.2219000 0.2322000 36.23 70.0 72 1000.00 9.68 43.06 0 43.06 0/1
chr1 231864002 rs2812385 G T . PASS 0.4592000 0.5648000 0.5942000 0.6322000 0.6554000 0.5741000 37.0 70.0 31 329.54 12.32 35.48 0 35.48 0/1
chr1 231936016 rs2759354 A G . PASS 0.9697000 0.9914000 1.0000000 0.9940000 0.9939000 0.9884000 37.0 70.0 22 883.47 0.00 100.00 0 100.00 1/1
chr1 231954101 rs6675281 C T . PASS 0.1884000 0.0821000 0.0030000 0.1243000 0.0470000 0.0958000 36.29 70.0 40 545.22 0.59 42.50 0 42.50 0/1
chr1 232221328 rs9725874 T C . PASS 0.4440000 0.6052000 0.5466000 0.5736000 0.5368000 0.5311000 37.0 70.0 126 1000.00 8.36 41.27 0 41.27 0/1
chr1 232527958 rs2486022 C A . PASS 0.5492000 0.5014000 0.6935000 0.4076000 0.4785000 0.5294000 37.0 70.0 41 884.23 4.68 60.98 0 60.98 0/1
chr1 232534776 rs586719 C T . PASS 0.3570000 0.2089000 0.0010000 0.2535000 0.1431000 0.2023000 35.8 70.0 12 337.10 3.33 83.33 0 83.33 0/1
chr1 232534957 rs12043251 T C . PASS 0.2564000 0.4697000 0.7371000 0.2654000 0.3436000 0.4016000 36.23 70.0 66 1000.00 8.50 46.97 0 46.97 0/1
chr1 232535030 rs629939 C T . PASS 1.0000000 0.9957000 1.0000000 0.9930000 0.9980000 0.9976000 36.31 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 232538234 rs17177525 T G . PASS 0.0696000 0.1311000 0.0010000 0.1889000 0.1217000 0.0984000 37.0 70.0 44 708.12 5.19 47.73 0 47.73 0/1
chr1 232551416 rs12569188 G A . PASS 0.1589000 0.3905000 0.4306000 0.3827000 0.2843000 0.3151000 36.57 69.29 63 935.46 3.17 44.44 0 44.44 0/1
chr1 232561396 rs41271519 T C . PASS 0.0008000 0.0072000 0.0000000 0.0080000 0.0000000 0.0027955 37.0 70.0 68 890.66 12.64 39.71 0 39.71 0/1
chr1 232564297 rs3210731 T A . PASS 0.0371000 0.1801000 0.0030000 0.1909000 0.1033000 0.0938000 35.86 70.0 48 672.07 0.60 43.75 0 43.75 0/1
chr1 232568293 rs1547741 A G . PASS 0.9985000 0.9726000 1.0000000 0.9175000 0.9928000 0.9778000 35.0 70.0 12 441.74 0.00 100.00 0 100.00 1/1
chr1 232574921 rs2275307 T C . PASS 0.4100000 0.3473000 0.4643000 0.2008000 0.3180000 0.3522000 36.26 69.75 81 1000.00 0.00 100.00 0 100.00 1/1
chr1 232581247 rs1409369 C G . PASS 0.3684000 0.4625000 0.5347000 0.2197000 0.3712000 0.3856000 36.1 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 232581436 rs12757779 G A . PASS 0.0363000 0.1657000 0.0010000 0.1889000 0.0951000 0.0893000 36.68 70.0 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 232606993 rs67046968,rs60083072 GTGTC G . PASS 0.2224000 0.3963000 0.1647000 0.2306000 0.3016000 0.2520000 36.08 70.0 13 485.97 0.00 100.00 0 100.00 1/1
chr1 232607050 rs12116796 T A . PASS 0.1793000 0.3919000 0.1647000 0.2296000 0.3016000 0.2398000 36.68 69.47 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 232607094 rs12116822 T C . PASS 0.2224000 0.3963000 0.1647000 0.2306000 0.3027000 0.2522000 36.45 69.7 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 232629475 rs3737839 C T . PASS 0.2254000 0.3963000 0.1637000 0.2316000 0.2975000 0.2520000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 232650750 rs3795366 A G . PASS 0.9917000 0.8429000 0.5040000 0.9463000 0.8446000 0.8351000 36.79 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 232650867 rs4649383 C T . PASS 0.4569000 0.6369000 0.3333000 0.7952000 0.6135000 0.5555000 36.53 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 232941153 rs12409898 C T . PASS 0.0840000 0.5879000 0.6607000 0.7097000 0.7587000 0.5274000 35.67 70.0 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 233086456 rs13381 T C . PASS 0.3336000 0.1513000 0.1825000 0.1988000 0.2127000 0.2272000 37.0 70.0 67 1000.00 2.36 56.72 0 56.72 0/1
chr1 233119951 rs2885 C T . PASS 0.2307000 0.1254000 0.1647000 0.1958000 0.1186000 0.1739000 35.8 70.0 12 337.10 3.33 83.33 0 83.33 0/1
chr1 233121791 rs12038915 G A . PASS 0.2322000 0.1239000 0.1637000 0.2008000 0.1227000 0.1757000 36.7 70.0 70 1000.00 4.84 55.71 0 57.14 0/1
chr1 233122127 rs41309639 C T . PASS 0.2163000 0.1254000 0.1667000 0.2008000 0.1227000 0.1723000 36.56 70.0 60 902.72 17.04 45.00 0 45.00 0/1
chr1 233134086 rs56231757 C T . PASS 0.2542000 0.1657000 0.1200000 0.2147000 0.1339000 0.1835000 36.16 70.0 81 1000.00 2.53 53.09 0 53.09 0/1
chr1 233137225 rs140788891,rs4027365 CATAA C . PASS 0.9531000 0.9251000 0.9117000 0.9463000 0.9151000 0.9321000 36.34 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 233152910 rs59041465,rs11271054 A AAAAGCAAGATTTTGAGTCCTCACAGCTATTCT . PASS 0.6271000 0.4366000 0.5417000 0.3300000 0.3047000 0.4609000 36.0 70.0 30 226.58 6.67 30.00 0 30.00 0/1
chr1 233222823 rs10752798 C A . PASS 0.6891000 0.4769000 0.3978000 0.6342000 0.5215000 0.5573000 36.44 70.0 64 1000.00 0.00 100.00 0 100.00 1/1
chr1 233225848 rs12059884 T C . PASS 0.3548000 0.1066000 0.0000000 0.1014000 0.0245000 0.1336000 37.0 70.0 65 899.68 6.50 41.54 0 41.54 0/1
chr1 233296891 rs2296515 T C . PASS 0.5666000 0.5058000 0.4157000 0.6332000 0.6902000 0.5653000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 233296908 rs2296516 T G . PASS 0.5666000 0.5058000 0.4117000 0.6332000 0.6902000 0.5645000 37.0 70.0 15 586.92 0.00 100.00 0 100.00 1/1
chr1 233489499 rs7539016 A G . PASS 0.5159000 0.6153000 0.5595000 0.4095000 0.4816000 0.5104000 37.0 70.0 23 483.08 7.45 60.87 0 60.87 0/1
chr1 233489529 rs7549137 G A . PASS 0.5159000 0.6153000 0.5595000 0.4095000 0.4816000 0.5104000 36.04 70.0 56 819.22 8.57 44.64 0 44.64 0/1
chr1 233489707 rs7551511 G T . PASS 0.5159000 0.6153000 0.5595000 0.4095000 0.4816000 0.5104000 36.59 70.0 82 838.37 15.90 32.93 0 35.37 0/1
chr1 233490536 rs137943316 A AATGTCTTGGGGATAATCTG . PASS 0.4410000 0.5519000 0.4990000 0.3221000 0.4202000 0.4401000 35.8 70.0 18 180.15 7.94 38.89 0 38.89 0/1
chr1 233490543 rs2049182 G A . PASS 0.5182000 0.6153000 0.5595000 0.4095000 0.4816000 0.5110000 37.0 70.0 20 199.72 5.71 35.00 0 35.00 0/1
chr1 233498026 rs56052041 C T . PASS 0.0023000 0.0403000 0.0000000 0.0477000 0.0020000 0.0161740 36.08 70.0 53 870.02 2.47 49.06 0 49.06 0/1
chr1 233749855 rs2795294 A G . PASS 0.6914000 0.6686000 0.7440000 0.6740000 0.5900000 0.6755000 37.0 70.0 20 799.93 0.00 100.00 0 100.00 1/1
chr1 233750336 . C A . PASS 0.0000000 0.0029000 0.0000000 0.0099000 0.0041000 0.0031949 37.0 68.33 37 353.26 9.46 32.43 0 32.43 0/1
chr1 233881048 rs619925 C T . PASS 0.9887000 0.9813000 0.9861000 0.9553000 0.9785000 0.9784000 37.0 70.0 16 632.84 0.00 100.00 0 100.00 1/1
chr1 233881123 rs679909 G A . PASS 0.5772000 0.5000000 0.4544000 0.5129000 0.4387000 0.5018000 37.0 70.0 34 658.83 5.26 55.88 0 55.88 0/1
chr1 234040742 rs12136133 A C . PASS 0.4304000 0.3098000 0.4464000 0.4831000 0.5429000 0.4495000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 234040898 rs78485515 G A . PASS 0.0189000 0.0447000 0.1508000 0.0398000 0.1043000 0.0699000 35.67 70.0 57 887.73 1.56 47.37 0 47.37 0/1
chr1 234041317 rs79244900 C T . PASS 0.0015000 0.0346000 0.1508000 0.0258000 0.0930000 0.0589000 36.73 70.0 89 1000.00 1.35 50.56 0 50.56 0/1
chr1 234041422 rs57010808 G C . PASS 0.4387000 0.3127000 0.4474000 0.4742000 0.5440000 0.4507000 36.46 69.82 112 1000.00 0.00 100.00 0 100.00 1/1
chr1 234454405 rs657010 A C . PASS 0.9977000 0.9928000 1.0000000 0.9841000 0.9939000 0.9940000 37.0 70.0 12 461.62 0.00 100.00 0 100.00 1/1
chr1 234509259 rs10910420 G C . PASS 0.8865000 0.6614000 0.4871000 0.4950000 0.4264000 0.6064000 35.67 70.0 94 1000.00 4.61 38.30 0 38.30 0/1
chr1 234519385 rs10797539 T C . PASS 0.6694000 0.5418000 0.4851000 0.3648000 0.3108000 0.4834000 31.0 70.0 13 143.00 15.38 46.15 0 46.15 0/1
chr1 234519452 rs58896934 C CT . PASS 0.8464000 0.6499000 0.4821000 0.4920000 0.4192000 0.5913000 34.33 70.0 35 204.53 2.86 22.86 0 25.71 0/1
chr1 234527575 rs3862040 C T . PASS 0.6233000 0.5692000 0.4940000 0.4334000 0.3998000 0.5080000 35.5 70.0 12 253.56 8.33 66.67 0 66.67 0/1
chr1 234528373 rs7523423 C T . PASS 0.6233000 0.5692000 0.4940000 0.4334000 0.3998000 0.5080000 35.91 70.0 16 366.83 3.41 68.75 0 68.75 0/1
chr1 234529552 rs2175594 C T . PASS 0.6225000 0.5692000 0.4950000 0.4384000 0.4049000 0.5100000 36.29 70.0 52 509.10 14.25 32.69 0 32.69 0/1
chr1 234529570 rs2175593 G A . PASS 0.6089000 0.5677000 0.4940000 0.4334000 0.3998000 0.5040000 37.0 70.0 41 345.37 11.38 29.27 0 29.27 0/1
chr1 234530325 rs10910426 A G . PASS 0.6233000 0.5720000 0.4940000 0.4344000 0.3998000 0.5086000 36.6 70.0 73 988.90 1.00 41.10 0 41.10 0/1
chr1 234530370 rs10797540 G A . PASS 0.6233000 0.5720000 0.4940000 0.4344000 0.3998000 0.5086000 35.89 70.0 111 1000.00 3.10 48.65 0 48.65 0/1
chr1 234541622 rs2271444 G T . PASS 0.1150000 0.2752000 0.3095000 0.2256000 0.2822000 0.2312000 37.0 70.0 37 603.88 18.92 48.65 0 48.65 0/1
chr1 234546245 rs1141264 C T . PASS 0.2110000 0.3847000 0.3958000 0.3907000 0.3579000 0.3371000 36.73 70.0 76 1000.00 1.44 57.89 0 57.89 0/1
chr1 234582651 rs4920246 T C . PASS 0.3101000 0.3804000 0.3036000 0.2932000 0.2485000 0.3031000 36.27 70.0 98 1000.00 0.00 100.00 0 100.00 1/1
chr1 234584231 rs2102596 C T . PASS 0.2564000 0.3732000 0.3036000 0.2893000 0.2485000 0.2871000 36.39 70.0 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 234593403 rs6693478 T C . PASS 0.0825000 0.1182000 0.0010000 0.1958000 0.0716000 0.0917000 37.0 70.0 39 894.40 7.18 64.10 0 64.10 0/1
chr1 234594947 rs12402937 T C . PASS 0.1112000 0.2493000 0.3075000 0.0964000 0.1759000 0.1795000 37.0 70.0 32 288.92 13.75 31.25 0 31.25 0/1
chr1 234744250 rs8722 G A . PASS 0.0129000 0.1398000 0.2034000 0.2455000 0.1166000 0.1358000 36.25 69.38 70 1000.00 11.96 45.71 0 45.71 0/1
chr1 234744413 rs4636 C A . PASS 0.1619000 0.2896000 0.2083000 0.4185000 0.2658000 0.2608000 36.52 70.0 77 1000.00 4.31 64.94 0 64.94 0/1
chr1 234744480 rs11502 G A . PASS 0.0068000 0.0778000 0.0000000 0.0964000 0.0225000 0.0363000 35.62 70.0 51 864.03 5.73 50.98 0 50.98 0/1
chr1 234745009 rs7545855 A G . PASS 0.8729000 0.5490000 0.2679000 0.7734000 0.4509000 0.6038000 36.54 70.0 79 1000.00 0.00 100.00 0 100.00 1/1
chr1 234953834 rs200007946 A C . PASS 0.4894000 0.7781000 0.8214000 0.8022000 0.6115000 0.6829000 37.0 26.8 22 106.02 38.18 22.73 0 22.73 0/1
chr1 235082292 rs59206581 G T . PASS 0.3313000 0.4006000 0.3254000 0.3926000 0.5951000 0.4036000 37.0 70.0 54 1000.00 7.74 61.11 0 61.11 0/1
chr1 235324047 rs66533903 A C . PASS 0.4009000 0.1239000 0.0208000 0.1252000 0.0767000 0.1673000 34.6 66.0 10 130.12 0.00 50.00 0 50.00 0/1
chr1 235324298 rs2295815 T C . PASS 0.4009000 0.1210000 0.0208000 0.1233000 0.0828000 0.1677000 36.41 69.51 109 1000.00 2.15 37.61 0 37.61 0/1
chr1 235324545 rs66929873 T A . PASS 0.2080000 0.0908000 0.0208000 0.1203000 0.0828000 0.1120000 36.56 70.0 65 883.52 0.23 41.54 0 41.54 0/1
chr1 235357303 rs34768226 A ATG . PASS 0.4244000 0.5058000 0.2510000 0.4742000 0.5982000 0.4447000 36.22 70.0 26 971.89 0.00 100.00 0 100.00 1/1
chr1 235357314 rs35180803 AT A . PASS . . . . . . 35.0 70.0 32 497.95 6.25 50.00 0 50.00 0/1
chr1 235357543 rs10802438 A G . PASS 0.0469000 0.4063000 0.2282000 0.3559000 0.5337000 0.2903000 35.59 70.0 35 548.26 3.70 48.57 0 48.57 0/1
chr1 235383188 rs4659654 A G . PASS 0.4433000 0.5115000 0.2510000 0.4791000 0.5982000 0.4515000 36.25 70.0 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 235383351 rs3795250 T C . PASS 0.0741000 0.4107000 0.2282000 0.3648000 0.5337000 0.2999000 37.0 70.0 15 173.00 0.00 40.00 0 40.00 0/1
chr1 235392546 rs12731746 T C . PASS 0.4342000 0.5086000 0.2510000 0.4791000 0.5982000 0.4487000 35.7 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 235394510 rs11321831 TA T . PASS 0.2247000 0.0821000 0.0228000 0.1143000 0.0654000 0.1110000 36.45 70.0 25 336.19 0.73 44.00 0 44.00 0/1
chr1 235394541 rs7518225 A C . PASS 0.4342000 0.5086000 0.2480000 0.4791000 0.5982000 0.4481000 37.0 70.0 15 586.92 0.00 100.00 0 100.00 1/1
chr1 235403595 rs11581220 G T . PASS 0.2216000 0.0807000 0.0228000 0.1143000 0.0644000 0.1098000 35.91 70.0 20 350.64 15.45 55.00 0 55.00 0/1
chr1 235490391 rs3840452 CA C . PASS 0.4281000 0.4006000 0.2520000 0.4672000 0.5879000 0.4279000 36.08 70.0 13 485.97 0.00 100.00 0 100.00 1/1
chr1 235505313 rs3841735 A AT . PASS 0.2065000 0.3184000 0.2272000 0.3549000 0.5266000 0.3185000 36.29 70.0 47 508.56 17.52 36.17 0 36.17 0/1
chr1 235543476 . TT T . PASS . . . . . . 35.6 70.0 40 1000.00 0.00 100.00 1 100.00 1/1
chr1 235543476 . TTGTGTGTGTGTGTGTGTGTGTG TTGTGTGTGTGTGTG . PASS . . . . . . . . 41 847.80 4.50 31.71 1 100.00 0/1
chr1 235543476 rs72371333,rs10524346 TTGTGTGTGTGTGTGTGTGTGTG T . PASS . . . . . . 35.85 70.0 41 847.80 1.08 65.85 1 100.00 0/1
chr1 235543477 . TG T . PASS . . . . . . 35.6 70.0 41 1000.00 2.56 97.56 1 97.56 1/1
chr1 235543478 . GT G . PASS . . . . . . 35.6 70.0 41 1000.00 2.56 97.56 1 97.56 1/1
chr1 235543479 . TG T . PASS . . . . . . 35.6 70.0 41 1000.00 2.56 97.56 1 97.56 1/1
chr1 235543480 . GT G . PASS . . . . . . 35.6 70.0 41 1000.00 2.56 97.56 1 97.56 1/1
chr1 235543481 . TG T . PASS . . . . . . 35.32 70.0 41 1000.00 0.00 100.00 1 100.00 1/1
chr1 235543482 . GT G . PASS . . . . . . 35.28 70.0 41 1000.00 2.44 97.56 1 97.56 1/1
chr1 235543483 . TG T . PASS . . . . . . 35.28 70.0 41 1000.00 2.44 97.56 1 97.56 1/1
chr1 235590559 rs12757197 G A . PASS 0.2511000 0.0807000 0.0208000 0.0885000 0.0890000 0.1168000 36.61 70.0 70 1000.00 1.11 44.29 0 44.29 0/1
chr1 235594182 rs2291687 A G . PASS 0.9644000 0.7161000 0.6726000 0.6372000 0.5971000 0.7338000 37.0 70.0 18 247.51 30.56 44.44 0 44.44 0/1
chr1 235612219 rs7537 T A . PASS 0.2625000 0.0692000 0.0198000 0.0815000 0.0879000 0.1164000 34.6 70.0 15 115.07 13.33 33.33 0 33.33 0/1
chr1 235620964 rs704709 G A . PASS 0.6180000 0.4092000 0.3442000 0.4781000 0.4980000 0.4824000 35.91 70.0 22 859.44 0.00 100.00 0 100.00 1/1
chr1 235621026 rs704710 A G . PASS 0.6657000 0.4164000 0.3433000 0.4781000 0.4980000 0.4958000 36.79 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 235628908 rs1305556 G A . PASS 0.5726000 0.7061000 0.8413000 0.5129000 0.7791000 0.6735000 36.14 70.0 22 474.09 5.19 63.64 0 63.64 0/1
chr1 235647631 rs291387 G T . PASS 0.5893000 0.7104000 0.8403000 0.5129000 0.7791000 0.6783000 36.69 70.0 56 1000.00 4.58 69.64 0 69.64 0/1
chr1 235652513 rs291396 T C . PASS 0.5893000 0.7104000 0.8413000 0.5139000 0.7791000 0.6787000 37.0 70.0 30 670.87 1.40 63.33 0 63.33 0/1
chr1 235715523 rs14326 A G . PASS 0.5893000 0.6599000 0.8383000 0.4950000 0.5941000 0.6312000 36.67 69.81 108 1000.00 0.00 100.00 0 100.00 1/1
chr1 235715556 rs423026 C G . PASS 0.5620000 0.6556000 0.8383000 0.4950000 0.5941000 0.6234000 36.57 69.76 84 1000.00 0.00 100.00 0 100.00 1/1
chr1 235715601 rs400948 A G . PASS 0.5635000 0.6556000 0.8383000 0.4950000 0.5941000 0.6238000 35.96 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 235715617 rs452950 A C . PASS 0.5635000 0.6556000 0.8383000 0.4950000 0.5941000 0.6238000 36.66 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 235715661 rs387492 A G . PASS 0.9818000 0.8040000 0.8472000 0.6839000 0.6575000 0.8069000 36.43 70.0 21 829.68 0.00 100.00 0 100.00 1/1
chr1 235747005 rs2774335 C T . PASS 0.3903000 0.5231000 0.7996000 0.3757000 0.4479000 0.4994000 36.1 69.5 56 1000.00 4.29 71.43 0 71.43 0/1
chr1 235747154 rs2774336 A G . PASS 0.3722000 0.5231000 0.7996000 0.3767000 0.4479000 0.4948000 37.0 70.0 35 488.74 5.71 42.86 0 42.86 0/1
chr1 235840495 rs72761794 G T . PASS 0.0000000 0.0014000 0.0000000 0.0070000 0.0102000 0.0035942 37.0 70.0 30 332.55 7.27 36.67 0 36.67 0/1
chr1 235860340 rs7541057 C T . PASS 0.7632000 0.3617000 0.0437000 0.5497000 0.1493000 0.4000000 34.0 70.0 30 187.37 1.67 26.67 0 26.67 0/1
chr1 235872665 rs2275856 T C . PASS 0.8812000 0.3343000 0.0734000 0.4264000 0.1759000 0.4137000 37.0 70.0 21 363.79 6.93 52.38 0 52.38 0/1
chr1 235887276 rs6667717 G T . PASS 0.8812000 0.3329000 0.0655000 0.4254000 0.1759000 0.4117000 35.91 70.0 35 305.49 3.12 31.43 0 31.43 0/1
chr1 235896726 rs6429275 C T . PASS 0.8812000 0.3372000 0.0655000 0.4264000 0.1759000 0.4125000 37.0 70.0 17 208.75 11.76 41.18 0 41.18 0/1
chr1 235901433 rs2145402 C A . PASS 0.0310000 0.2651000 0.0724000 0.3082000 0.2444000 0.1691000 34.88 70.0 34 535.12 17.65 50.00 0 50.00 0/1
chr1 235922228 rs3738519 T C . PASS 0.4198000 0.2003000 0.0248000 0.2813000 0.1534000 0.2300000 37.0 70.0 18 372.82 13.13 61.11 0 61.11 0/1
chr1 235940450 rs2273584 C T . PASS 0.4871000 0.2997000 0.0655000 0.4254000 0.1646000 0.3009000 36.43 70.0 69 1000.00 2.48 60.87 0 60.87 0/1
chr1 235945294 rs6696123 T C . PASS 0.4879000 0.2997000 0.0655000 0.4254000 0.1769000 0.3035000 37.0 70.0 75 1000.00 9.03 52.00 0 52.00 0/1
chr1 235972435 rs3820553 T C . PASS 0.4879000 0.2983000 0.0665000 0.4235000 0.1748000 0.3027000 36.66 70.0 87 1000.00 0.53 40.23 0 40.23 0/1
chr1 235972867 rs1063128 T C . PASS 0.4887000 0.2997000 0.0655000 0.4254000 0.1748000 0.3033000 36.73 70.0 85 1000.00 10.43 51.76 0 51.76 0/1
chr1 236141174 rs3213190 T C . PASS 0.3850000 0.2608000 0.6131000 0.1451000 0.2761000 0.3442000 36.31 70.0 101 1000.00 0.65 51.49 0 51.49 0/1
chr1 236142253 rs12032474 T G . PASS 0.3843000 0.2594000 0.6141000 0.1441000 0.2761000 0.3438000 36.59 69.31 68 958.03 1.62 42.65 0 42.65 0/1
chr1 236144951 rs3738525 A G . PASS 0.3555000 0.2579000 0.6151000 0.1402000 0.2710000 0.3345000 36.68 70.0 79 1000.00 1.27 48.10 0 48.10 0/1
chr1 236145145 rs715956 T C . PASS 0.3570000 0.2579000 0.6151000 0.1402000 0.2710000 0.3349000 37.0 70.0 21 154.95 0.00 28.57 0 28.57 0/1
chr1 236154057 rs139359390,rs72308329,rs3831990 AGGACTACAT A . PASS 0.2784000 0.2262000 0.6240000 0.1083000 0.2607000 0.3031000 35.38 70.0 12 239.99 8.33 66.67 0 66.67 0/1
chr1 236154186 rs72765416 C T . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 70.0 75 1000.00 10.00 48.00 0 48.00 0/1
chr1 236154365 rs4660137 G T . PASS 0.3820000 0.2608000 0.6429000 0.1412000 0.2720000 0.3478000 37.0 70.0 44 666.35 8.18 45.45 0 45.45 0/1
chr1 236175153 rs2031486 T C . PASS 0.0560000 0.1455000 0.0873000 0.3509000 0.1973000 0.1615000 37.0 70.0 14 176.01 42.86 42.86 0 42.86 0/1
chr1 236175339 rs2031487 T C . PASS 0.7950000 0.6427000 0.7698000 0.5000000 0.7290000 0.6967000 36.23 70.0 53 1000.00 7.30 58.49 0 58.49 0/1
chr1 236193145 rs2273586 G C . PASS 0.5825000 0.2781000 0.4980000 0.3320000 0.4264000 0.4425000 37.0 70.0 15 252.39 3.33 53.33 0 53.33 0/1
chr1 236201609 rs4659620 T G . PASS 0.0492000 0.1182000 0.0972000 0.2724000 0.1595000 0.1348000 37.0 70.0 29 502.65 8.74 51.72 0 51.72 0/1
chr1 236203443 rs3768086 G A . PASS 0.5280000 0.5303000 0.6994000 0.4155000 0.5685000 0.5481000 36.37 70.0 92 1000.00 2.17 41.30 0 41.30 0/1
chr1 236203503 rs3768087 G C . PASS 0.0651000 0.3919000 0.3581000 0.2435000 0.2781000 0.2468000 35.59 70.0 80 1000.00 6.76 42.50 0 42.50 0/1
chr1 236205121 rs4297282 T C . PASS 0.6452000 0.5519000 0.7034000 0.4175000 0.5767000 0.5849000 37.0 70.0 12 182.03 0.00 50.00 0 50.00 0/1
chr1 236208687 rs71559910 AAT AGA . PASS . . . . . . 36.0 70.0 11 173.03 0.00 54.55 0 54.55 0/1
chr1 236208773 rs10733133 C T . PASS 0.6369000 0.5562000 0.7063000 0.4334000 0.5777000 0.5873000 36.14 70.0 38 425.93 1.50 36.84 0 36.84 0/1
chr1 236209024 rs3768088 C G . PASS 0.6369000 0.5562000 0.7063000 0.4334000 0.5777000 0.5873000 37.0 70.0 28 422.11 1.65 46.43 0 46.43 0/1
chr1 236273694 rs4659623 G A . PASS 0.0620000 0.3012000 0.3522000 0.1958000 0.2260000 0.2125000 37.0 70.0 14 301.32 23.81 64.29 0 64.29 0/1
chr1 236274147 rs7516388 G A . PASS 0.4047000 0.4914000 0.4395000 0.3936000 0.3579000 0.4123000 36.1 70.0 82 1000.00 1.95 48.78 0 48.78 0/1
chr1 236274805 rs7519217 G A . PASS 0.1868000 0.3112000 0.3552000 0.1968000 0.2270000 0.2478000 37.0 70.0 11 268.58 2.27 72.73 0 72.73 0/1
chr1 236275077 rs7542837 C T . PASS 0.7617000 0.5375000 0.4663000 0.4095000 0.3640000 0.5228000 37.0 70.0 19 244.51 5.26 42.11 0 42.11 0/1
chr1 236275237 . CA C . PASS . . . . . . 35.86 69.91 38 737.52 5.26 57.89 1 57.89 0/1
chr1 236275237 . CAACATTGAAAA CGT . PASS . . . . . . . . 33 737.52 9.09 66.67 1 66.67 0/1
chr1 236275238 . AA A . PASS . . . . . . 35.86 69.91 37 740.53 8.11 59.46 1 59.46 0/1
chr1 236275239 . AC A . PASS . . . . . . 35.86 69.91 36 743.55 0.00 61.11 1 61.11 0/1
chr1 236275240 . CA C . PASS . . . . . . 35.86 69.91 36 743.55 11.11 61.11 1 61.11 0/1
chr1 236275241 . AT A . PASS . . . . . . 35.86 69.91 36 743.54 5.56 61.11 1 61.11 0/1
chr1 236275242 . TT T . PASS . . . . . . 35.86 69.91 38 737.52 5.26 57.89 1 57.89 0/1
chr1 236275243 . TG T . PASS . . . . . . 35.86 69.91 38 737.52 5.26 57.89 1 57.89 0/1
chr1 236275244 . GA G . PASS . . . . . . 35.86 69.91 37 740.53 8.11 59.46 1 59.46 0/1
chr1 236275245 . AA A . PASS . . . . . . 35.86 69.91 35 746.56 8.57 62.86 1 62.86 0/1
chr1 236275247 . A G . PASS . . . . . . 37.0 69.91 37 775.11 8.11 59.46 1 59.46 0/1
chr1 236275248 rs374931719 A T . PASS 0.0008000 0.0029000 0.0000000 0.0010000 0.0000000 0.0007987 37.0 69.91 37 770.96 8.11 59.46 1 59.46 0/1
chr1 236275380 rs10924217 A G . PASS 0.7534000 0.5346000 0.4683000 0.4095000 0.3630000 0.5204000 37.0 70.0 15 131.23 13.33 33.33 0 33.33 0/1
chr1 236305885 rs7522547 G A . PASS 0.0681000 0.1398000 0.1885000 0.2127000 0.3374000 0.1839000 36.08 70.0 22 432.31 10.49 59.09 0 59.09 0/1
chr1 236347224 rs67652024 C T . PASS 0.3775000 0.0403000 0.0109000 0.0040000 0.0808000 0.1240000 35.67 70.0 40 574.98 5.00 45.00 0 45.00 0/1
chr1 236368391 rs3215798 C CT . PASS 0.3328000 0.3458000 0.6151000 0.2594000 0.4029000 0.3904000 37.0 70.0 46 440.03 15.07 32.61 0 32.61 0/1
chr1 236381825 rs1055851 G C . PASS 0.4803000 0.5821000 0.8839000 0.4006000 0.5297000 0.5693000 37.0 70.0 44 499.27 13.64 36.36 0 36.36 0/1
chr1 236381897 rs1615601 T A . PASS 0.4803000 0.5821000 0.8839000 0.4006000 0.5297000 0.5693000 37.0 70.0 27 174.51 5.29 25.93 0 25.93 0/1
chr1 236384278 rs1405624 G C . PASS 0.4803000 0.5821000 0.8849000 0.4006000 0.5297000 0.5695000 37.0 70.0 20 279.11 18.89 45.00 0 45.00 0/1
chr1 236385165 rs2463189 G C . PASS 0.4803000 0.5821000 0.8849000 0.4006000 0.5286000 0.5693000 37.0 67.14 22 189.55 2.60 31.82 0 31.82 0/1
chr1 236385360 rs2477587 C T . PASS 0.4803000 0.5821000 0.8849000 0.4006000 0.5297000 0.5695000 35.0 70.0 33 584.04 16.16 54.55 0 54.55 0/1
chr1 236385379 rs2463188 A G . PASS 0.4803000 0.5821000 0.8849000 0.4006000 0.5297000 0.5695000 36.2 70.0 24 509.84 5.00 62.50 0 62.50 0/1
chr1 236399442 rs1254194 G T . PASS 0.1120000 0.3631000 0.1329000 0.6014000 0.5194000 0.3289000 35.8 70.0 16 320.91 5.00 62.50 0 62.50 0/1
chr1 236413147 rs1726639 T C . PASS 0.1929000 0.3112000 0.3968000 0.2475000 0.1902000 0.2608000 35.91 70.0 33 315.67 36.36 33.33 0 33.33 0/1
chr1 236413230 rs2477599 T A . PASS 0.1354000 0.3646000 0.1329000 0.6014000 0.5204000 0.3355000 35.67 70.0 52 898.63 0.43 51.92 0 51.92 0/1
chr1 236413282 rs2056713 G A . PASS 0.1929000 0.3112000 0.3968000 0.2475000 0.1902000 0.2608000 37.0 70.0 35 572.27 4.03 48.57 0 48.57 0/1
chr1 236415347 rs1749589 T C . PASS 0.1929000 0.3112000 0.3968000 0.2475000 0.1902000 0.2608000 37.0 70.0 83 1000.00 6.02 40.96 0 40.96 0/1
chr1 236415444 rs1618510 G A . PASS 0.1619000 0.3098000 0.3968000 0.2475000 0.1902000 0.2524000 37.0 70.0 22 235.48 4.55 36.36 0 36.36 0/1
chr1 236433135 rs3834089 AT A . PASS 0.7163000 0.7795000 0.8829000 0.8897000 0.8006000 0.8099000 35.09 70.0 23 871.63 0.00 100.00 0 100.00 1/1
chr1 236444879 rs11281666,rs56307934 G GGCCCGGCCCT . PASS 0.5265000 0.6009000 0.8591000 0.6630000 0.5583000 0.6374000 36.46 70.0 13 484.94 0.00 100.00 0 100.00 1/1
chr1 236444973 rs1269025 C T . PASS 0.1520000 0.2464000 0.3790000 0.3141000 0.1984000 0.2524000 34.78 70.0 59 857.70 1.38 45.76 0 45.76 0/1
chr1 236557771 rs966365 G A . PASS 0.4682000 0.8631000 0.9187000 0.8250000 0.9366000 0.7768000 36.37 70.0 81 1000.00 14.88 46.91 0 46.91 0/1
chr1 236572475 rs669710 A G . PASS 0.4584000 0.4899000 0.2927000 0.5785000 0.5010000 0.4619000 35.88 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 236574267 rs630891 T C . PASS 0.5477000 0.6873000 0.3899000 0.6660000 0.6677000 0.5825000 36.64 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 236590629 rs636378 C T . PASS 0.1316000 0.4481000 0.2609000 0.5815000 0.4703000 0.3580000 35.91 70.0 11 411.98 0.00 100.00 0 100.00 1/1
chr1 236590659 rs636048 G C . PASS 0.1316000 0.4481000 0.2619000 0.5815000 0.4703000 0.3582000 36.45 70.0 22 867.30 0.00 100.00 0 100.00 1/1
chr1 236590816 rs635487 T G . PASS 0.2670000 0.4582000 0.2619000 0.5815000 0.4703000 0.3954000 36.2 70.0 15 574.91 0.00 100.00 0 100.00 1/1
chr1 236700807 rs1126407 T A . PASS 0.4448000 0.5072000 0.4762000 0.6759000 0.4121000 0.4998000 36.69 70.0 39 1000.00 0.00 100.00 0 100.00 1/1
chr1 236700823 rs1041934 T C . PASS 0.4455000 0.5072000 0.4762000 0.6759000 0.4121000 0.5000000 37.0 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 236700857 rs1041935 C T . PASS 0.4455000 0.5072000 0.4762000 0.6759000 0.4121000 0.5000000 36.27 70.0 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 236700982 rs2737706 T C . PASS 0.4455000 0.5072000 0.4772000 0.6759000 0.4121000 0.5002000 37.0 70.0 25 1000.00 0.00 100.00 0 100.00 1/1
chr1 236702117 rs2244809 T G . PASS 0.6657000 0.6311000 0.6577000 0.7078000 0.4785000 0.6312000 36.67 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 236702153 rs2244808 G A . PASS 0.4448000 0.5072000 0.4573000 0.6750000 0.4121000 0.4958000 36.83 70.0 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 236702208 rs35499589 GCA GTG . PASS . . . . . . 36.69 70.0 100 1000.00 1.84 98.00 0 100.00 1/1
chr1 236702374 rs2472126 G A . PASS 0.2738000 0.4640000 0.4752000 0.6173000 0.3947000 0.4333000 36.62 70.0 63 1000.00 0.00 100.00 0 100.00 1/1
chr1 236702447 rs12744425 T G . PASS 0.4085000 0.4971000 0.3819000 0.6710000 0.3906000 0.4647000 37.0 70.0 23 921.09 0.00 100.00 0 100.00 1/1
chr1 236702450 rs12744427 T C . PASS 0.4440000 0.5072000 0.4762000 0.6759000 0.4100000 0.4992000 37.0 70.0 22 883.47 0.00 100.00 0 100.00 1/1
chr1 236702475 rs11807205 A G . PASS 0.4425000 0.5000000 0.4762000 0.6720000 0.3793000 0.4910000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 236703832 rs34818366 CG C . PASS . . . . . . 36.67 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 236706352 rs2758174 A C . PASS 0.4448000 0.5086000 0.4772000 0.6759000 0.4121000 0.5002000 36.41 70.0 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 236706371 rs2758175 A G . PASS 0.4448000 0.5086000 0.4772000 0.6759000 0.4121000 0.5002000 36.06 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 236706425 rs2244267 G A . PASS 0.4448000 0.5086000 0.4772000 0.6759000 0.4121000 0.5002000 35.59 70.0 17 650.59 0.00 100.00 0 100.00 1/1
chr1 236706780 rs2243527 C T . PASS 0.7005000 0.7622000 0.6865000 0.7406000 0.5143000 0.6779000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 236706862 rs2243525 G C . PASS 0.7005000 0.7622000 0.6865000 0.7396000 0.5143000 0.6777000 36.14 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 236707007 rs2799410 C T . PASS 0.2239000 0.4769000 0.4831000 0.6362000 0.4049000 0.4293000 35.06 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 236707036 rs2794786 A T . PASS 0.4448000 0.5086000 0.4772000 0.6759000 0.4121000 0.5002000 36.29 70.0 17 658.45 0.00 100.00 0 100.00 1/1
chr1 236707045 rs2799409 C T . PASS 0.4448000 0.5086000 0.4772000 0.6769000 0.4121000 0.5004000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 236708022 rs5781896 GT G . PASS . . . . . . 35.8 70.0 11 330.84 9.09 90.91 0 90.91 0/1
chr1 236708224 rs2244063 A C . PASS 0.4448000 0.5086000 0.4772000 0.6759000 0.4121000 0.5002000 37.0 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 236711297 rs2254823 A T . PASS 0.4448000 0.5101000 0.4772000 0.6759000 0.4121000 0.5004000 36.45 70.0 22 867.30 0.00 100.00 0 100.00 1/1
chr1 236711323 rs15701 T C . PASS 0.4448000 0.5101000 0.4772000 0.6759000 0.4121000 0.5004000 36.41 69.51 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 236714064 rs6989 A C . PASS 0.4342000 0.5086000 0.4762000 0.6750000 0.4121000 0.4970000 37.0 70.0 13 503.38 0.00 100.00 0 100.00 1/1
chr1 236714292 rs373763274,rs374936841,rs376372551,rs55866014 T TAA . PASS . . . . . . 36.43 70.0 35 1000.00 8.25 51.43 0 85.71 0/1
chr1 236714292 . T TA . PASS . . . . . . 36.4 70.0 35 1000.00 6.23 31.43 0 85.71 0/1
chr1 236714335 rs2254487 C T . PASS 0.2209000 0.4741000 0.4772000 0.6362000 0.4049000 0.4269000 36.4 70.0 20 787.91 0.00 100.00 0 100.00 1/1
chr1 236716959 rs2275685 C T . PASS 0.3865000 0.5072000 0.4772000 0.6759000 0.4121000 0.4846000 37.0 70.0 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 236717104 rs2275686 A G . PASS 0.3865000 0.5086000 0.4772000 0.6759000 0.4121000 0.4848000 34.88 70.0 17 638.58 0.00 100.00 0 100.00 1/1
chr1 236717926 rs2275687 T C . PASS 0.3865000 0.5086000 0.4772000 0.6759000 0.4121000 0.4848000 36.42 69.68 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 236718524 rs6668848 G C . PASS 0.1914000 0.4654000 0.4722000 0.6233000 0.3855000 0.4105000 37.0 70.0 20 795.78 0.00 100.00 0 100.00 1/1
chr1 236718561 rs6668926 G A . PASS 0.3865000 0.5072000 0.4772000 0.6759000 0.4121000 0.4846000 37.0 70.0 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 236718620 rs1126627 T C . PASS 0.3858000 0.5086000 0.4782000 0.6759000 0.4121000 0.4848000 36.66 70.0 70 1000.00 0.00 100.00 0 100.00 1/1
chr1 236719135 rs1885532 T C . PASS 0.8775000 0.8833000 0.9593000 0.8022000 0.8436000 0.8730000 36.22 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 236719193 rs1885533 A G . PASS 0.3865000 0.5086000 0.4782000 0.6759000 0.4121000 0.4850000 36.53 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 236719259 rs1885534 G A . PASS 0.0340000 0.4582000 0.3839000 0.6233000 0.3845000 0.3500000 36.37 70.0 19 746.14 0.00 100.00 0 100.00 1/1
chr1 236721610 rs2275688 G A . PASS 0.6074000 0.6297000 0.6538000 0.7078000 0.4785000 0.6148000 35.85 69.73 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 236721660 rs2275689 T C . PASS 0.7020000 0.7622000 0.6825000 0.7406000 0.5133000 0.6773000 36.52 70.0 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 236721731 rs819431 T C . PASS 0.9985000 1.0000000 1.0000000 1.0000000 1.0000000 0.9996000 36.7 70.0 79 1000.00 0.00 100.00 0 100.00 1/1
chr1 236722489 rs2146122 C T . PASS 0.6074000 0.6326000 0.6538000 0.7097000 0.4785000 0.6156000 35.36 69.09 22 847.43 0.00 100.00 0 100.00 1/1
chr1 236723176 . GGC GAA . PASS . . . . . . 36.71 69.05 21 837.55 0.00 100.00 0 100.00 1/1
chr1 236724504 rs1077439 G A . PASS 0.4501000 0.6210000 0.6538000 0.7078000 0.5133000 0.5789000 37.0 70.0 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 236724605 rs1077438 G T . PASS 0.4493000 0.6210000 0.6538000 0.7078000 0.5133000 0.5787000 35.91 70.0 22 855.29 0.00 100.00 0 100.00 1/1
chr1 236729867 rs2758172 C T . PASS 0.2542000 0.4870000 0.4772000 0.6362000 0.4039000 0.4373000 36.2 70.0 15 579.06 0.00 100.00 0 100.00 1/1
chr1 236735939 rs2853602 T C . PASS 0.0318000 0.4640000 0.4712000 0.6233000 0.3926000 0.3694000 36.45 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 236740039 rs6658793 G C . PASS 0.4259000 0.6095000 0.6518000 0.7008000 0.4642000 0.5595000 37.0 70.0 35 1000.00 0.00 100.00 0 100.00 1/1
chr1 236744712 rs4518892 C A . PASS 0.1316000 0.4957000 0.4762000 0.6710000 0.4131000 0.4147000 36.48 70.0 23 909.07 0.00 100.00 0 100.00 1/1
chr1 236746275 rs2794769 G C . PASS 0.3003000 0.5922000 0.6518000 0.6849000 0.4530000 0.5186000 37.0 70.0 17 670.47 0.00 100.00 0 100.00 1/1
chr1 236746443 rs2794768 C T . PASS 0.3003000 0.5922000 0.6518000 0.6849000 0.4530000 0.5186000 36.48 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 236748505 rs1006456 T C . PASS 0.3003000 0.5922000 0.6518000 0.6849000 0.4530000 0.5186000 36.74 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 236749649 rs2794763 T C . PASS 0.0348000 0.4640000 0.4712000 0.6223000 0.3875000 0.3690000 36.17 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 236749817 rs2799420 C T . PASS 0.3003000 0.5922000 0.6518000 0.6849000 0.4530000 0.5186000 35.0 70.0 18 680.35 0.00 100.00 0 100.00 1/1
chr1 236755427 rs2794759 A G . PASS 0.3290000 0.6009000 0.7242000 0.6998000 0.5276000 0.5595000 37.0 70.0 21 841.70 0.00 100.00 0 100.00 1/1
chr1 236755814 rs2794757 G A . PASS 0.3290000 0.6009000 0.7232000 0.6998000 0.5276000 0.5593000 37.0 68.33 12 465.77 0.00 100.00 0 100.00 1/1
chr1 236755837 rs2564739 C T . PASS 0.3290000 0.6009000 0.7242000 0.6998000 0.5276000 0.5595000 34.75 68.75 16 596.81 0.00 100.00 0 100.00 1/1
chr1 236757200 rs2564738 A G . PASS 0.3290000 0.6009000 0.7242000 0.6998000 0.5276000 0.5595000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 236757229 rs2794754 G A . PASS 0.3290000 0.6009000 0.7242000 0.6998000 0.5276000 0.5595000 37.0 70.0 17 674.61 0.00 100.00 0 100.00 1/1
chr1 236758887 rs2794751 T C . PASS 0.3290000 0.6009000 0.7242000 0.6998000 0.5276000 0.5595000 36.33 69.63 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 236759060 rs2794750 T C . PASS 0.3177000 0.5937000 0.7242000 0.6849000 0.5174000 0.5505000 37.0 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 236767176 rs1529541 C G . PASS 0.2262000 0.4856000 0.4772000 0.6312000 0.4029000 0.4285000 36.08 70.0 13 491.37 0.00 100.00 0 100.00 1/1
chr1 236767178 rs375752396,rs5781902 AG A . PASS 0.4062000 0.6671000 0.6429000 0.6282000 0.5092000 0.5547000 34.6 70.0 16 303.51 10.00 62.50 0 62.50 0/1
chr1 236767181 . GG G . PASS . . . . . . 36.14 67.14 16 79.94 37.50 25.00 0 43.75 0/1
chr1 236767330 rs10802551 A G . PASS 0.3290000 0.7205000 0.7520000 0.6928000 0.5429000 0.5833000 36.43 70.0 84 1000.00 0.00 100.00 0 100.00 1/1
chr1 236876085 rs7516579 G A . PASS 0.4213000 0.5965000 0.5893000 0.6759000 0.5481000 0.5553000 37.0 70.0 67 1000.00 4.88 49.25 0 49.25 0/1
chr1 236876177 rs707209 T C . PASS 0.9992000 1.0000000 1.0000000 1.0000000 1.0000000 0.9998000 35.55 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 236881403 rs2275399 C T . PASS 0.0446000 0.4568000 0.4206000 0.6243000 0.3753000 0.3584000 35.0 70.0 12 441.74 0.00 100.00 0 100.00 1/1
chr1 236882110 rs1341865 G A . PASS 0.9750000 0.9957000 1.0000000 0.9990000 1.0000000 0.9926000 37.0 70.0 11 424.00 0.00 100.00 0 100.00 1/1
chr1 236882303 rs1341864 T C . PASS 0.9750000 0.9957000 1.0000000 0.9990000 1.0000000 0.9926000 36.41 70.0 122 1000.00 0.00 100.00 0 100.00 1/1
chr1 236883421 rs1341863 C T . PASS 0.8139000 0.8559000 0.9831000 0.9960000 0.9693000 0.9207000 36.25 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 236883564 rs1341862 G A . PASS 0.8192000 0.8573000 0.9831000 0.9960000 0.9693000 0.9223000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 236897633 rs707203 A G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 236899899 rs11355106 TC T . PASS 0.3608000 0.6628000 0.4802000 0.7197000 0.5112000 0.5282000 36.43 70.0 107 1000.00 0.00 100.00 0 100.00 1/1
chr1 236900018 rs7542508 G A . PASS 0.0817000 0.4452000 0.3909000 0.5984000 0.3957000 0.3594000 36.59 70.0 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 236902560 rs7527525 C T . PASS 0.0893000 0.4539000 0.4038000 0.6133000 0.4172000 0.3724000 35.96 70.0 23 901.21 0.00 100.00 0 100.00 1/1
chr1 236902594 rs2288601 C G . PASS 0.7640000 0.7853000 0.7837000 0.7753000 0.7352000 0.7676000 36.08 70.0 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 236902865 rs2288602 A C . PASS 0.1172000 0.4755000 0.4802000 0.6501000 0.5051000 0.4227000 36.5 69.72 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 236902955 rs7544174 T C . PASS 0.1180000 0.4769000 0.4702000 0.6501000 0.5031000 0.4207000 37.0 70.0 10 382.23 0.00 100.00 0 100.00 1/1
chr1 236924506 rs2282366 A G . PASS 0.7852000 0.8674000 0.7421000 0.8877000 0.7321000 0.7981000 35.82 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 236926030 rs1051251 A G . PASS 0.0287000 0.5231000 0.3532000 0.5586000 0.4427000 0.3498000 35.8 70.0 10 301.24 5.00 80.00 0 100.00 0/1
chr1 236972186 rs12759827 A G . PASS 0.0129000 0.1686000 0.0010000 0.2863000 0.0521000 0.0946000 36.56 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 237038161 rs1770449 T C . PASS 0.0446000 0.2997000 0.2222000 0.4095000 0.2658000 0.2322000 36.82 70.0 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 237144731 rs6671297 G C . PASS 0.2088000 0.4769000 0.5417000 0.5288000 0.4591000 0.4261000 36.28 69.46 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 237199775 rs2385576 T G . PASS 0.3192000 0.4568000 0.5774000 0.5328000 0.4530000 0.4593000 36.66 70.0 51 1000.00 1.23 68.63 0 68.63 0/1
chr1 237471081 rs10802600 T C . PASS 0.6036000 0.3386000 0.4167000 0.3996000 0.5624000 0.4802000 36.82 70.0 65 1000.00 0.00 100.00 0 100.00 1/1
chr1 237617757 rs3765097 C T . PASS 0.2769000 0.5447000 0.7391000 0.5994000 0.6043000 0.5357000 36.17 70.0 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 237620049 rs2045955 T C . PASS 0.2716000 0.5245000 0.7788000 0.5596000 0.6022000 0.5311000 36.71 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 237711797 rs2253273 A G . PASS 0.5378000 0.9510000 0.8720000 0.9583000 0.9652000 0.8303000 36.41 69.76 82 1000.00 0.00 100.00 0 100.00 1/1
chr1 237730124 rs2805390 A G . PASS 0.7020000 0.9697000 0.9990000 0.9712000 0.9714000 0.9056000 36.52 69.2 25 996.76 0.00 100.00 0 100.00 1/1
chr1 237732395 rs2805396 G A . PASS 0.2443000 0.7176000 0.2619000 0.6978000 0.6963000 0.4928000 37.0 70.0 38 1000.00 0.00 100.00 0 100.00 1/1
chr1 237732673 rs12740534 C T . PASS 0.0023000 0.0692000 0.0000000 0.0417000 0.0061000 0.0197680 36.43 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 237753074 rs11331089,rs371111802 AT A . PASS 0.0499000 0.5072000 0.2659000 0.4573000 0.2883000 0.2851000 36.45 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 237753364 rs2805409 A C . PASS 0.1437000 0.5375000 0.3105000 0.4901000 0.3252000 0.3369000 36.45 70.0 22 867.30 0.00 100.00 0 100.00 1/1
chr1 237753390 rs2805410 A G . PASS 0.1437000 0.5375000 0.3115000 0.4901000 0.3252000 0.3371000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 237754340 rs1332777 A G . PASS 0.1437000 0.5403000 0.3105000 0.4911000 0.3252000 0.3375000 36.5 70.0 24 954.99 0.00 100.00 0 100.00 1/1
chr1 237755188 rs2618713 C T . PASS 0.1437000 0.5403000 0.3105000 0.4911000 0.3170000 0.3359000 36.31 69.62 52 1000.00 0.00 100.00 0 100.00 1/1
chr1 237755203 rs2779430 T C . PASS 0.1437000 0.5403000 0.3105000 0.4911000 0.3252000 0.3375000 36.72 70.0 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 237757027 rs1478915 G A . PASS 0.1452000 0.5403000 0.3105000 0.4911000 0.3252000 0.3379000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 237765470 rs791541 A T . PASS 0.0507000 0.5245000 0.2659000 0.4771000 0.2955000 0.2931000 37.0 70.0 22 879.32 0.00 100.00 0 100.00 1/1
chr1 237794603 rs1759123 A G . PASS 0.3729000 0.7450000 0.5784000 0.7376000 0.7618000 0.6150000 34.6 70.0 11 131.26 3.64 45.45 0 45.45 0/1
chr1 237796837 rs10802626 G A . PASS 0.5310000 0.3818000 0.4782000 0.3221000 0.3814000 0.4285000 37.0 70.0 20 799.93 0.00 100.00 0 100.00 1/1
chr1 237797082 rs1967579 T G . PASS 0.5734000 0.3862000 0.4792000 0.3221000 0.3824000 0.4407000 36.08 70.0 13 491.37 0.00 100.00 0 100.00 1/1
chr1 237798342 rs41305973 G A . PASS 0.0083000 0.0389000 0.0000000 0.1014000 0.0072000 0.0294000 36.33 70.0 44 574.95 11.62 40.91 0 40.91 0/1
chr1 237801770 rs707189 T C . PASS 0.8359000 0.9870000 1.0000000 1.0000000 1.0000000 0.9549000 36.49 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 237802559 rs530109 T C . PASS 0.9939000 0.9986000 1.0000000 1.0000000 1.0000000 0.9982000 35.67 70.0 18 692.36 0.00 100.00 0 100.00 1/1
chr1 237813126 rs625006 A G . PASS 0.5151000 0.5115000 0.8105000 0.4374000 0.5900000 0.5731000 36.45 70.0 22 871.45 0.00 100.00 0 100.00 1/1
chr1 237814783 rs684923 C T . PASS 0.4864000 0.5029000 0.7956000 0.4324000 0.5624000 0.5549000 36.64 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 237817514 rs3831940 GA G . PASS 0.5930000 0.3501000 0.5437000 0.2286000 0.4458000 0.4475000 34.73 70.0 11 389.41 0.00 100.00 0 100.00 1/1
chr1 237817784 rs669375 A G . PASS 0.3124000 0.3098000 0.5228000 0.1948000 0.4284000 0.3534000 36.56 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 237824332 rs471647 G A . PASS 0.9818000 0.9971000 1.0000000 1.0000000 1.0000000 0.9948000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 237831103 rs477245 C A . PASS 0.8275000 0.9870000 1.0000000 0.9970000 1.0000000 0.9521000 35.8 70.0 10 366.07 0.00 100.00 0 100.00 1/1
chr1 237831382 rs56090696 G A . PASS 0.0000000 0.0202000 0.0000000 0.0219000 0.0000000 0.0071885 37.0 70.0 11 101.50 0.00 36.36 0 36.36 0/1
chr1 237863718 rs2797436 T G . PASS 0.8880000 0.9914000 1.0000000 1.0000000 1.0000000 0.9692000 36.49 70.0 47 1000.00 0.00 100.00 0 100.00 1/1
chr1 237865203 rs939699 C T . PASS 0.8880000 0.9914000 1.0000000 1.0000000 1.0000000 0.9692000 36.45 70.0 22 871.45 0.00 100.00 0 100.00 1/1
chr1 237869704 rs12040571 C A . PASS 0.3185000 0.5965000 0.3978000 0.6750000 0.6176000 0.5030000 37.0 69.09 58 707.75 3.45 37.93 0 37.93 0/1
chr1 237881770 rs2797441 C T . PASS 0.8555000 0.9899000 1.0000000 1.0000000 1.0000000 0.9605000 35.22 68.52 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 237890437 rs2685301 C T . PASS 0.8548000 0.9899000 1.0000000 1.0000000 1.0000000 0.9603000 36.28 70.0 50 1000.00 0.00 100.00 0 100.00 1/1
chr1 237893674 rs2797445 C T . PASS 0.9470000 0.9942000 1.0000000 1.0000000 1.0000000 0.9852000 37.0 70.0 25 1000.00 0.00 100.00 0 100.00 1/1
chr1 237923053 rs2253831 C T . PASS 0.8275000 0.7464000 0.8204000 0.6988000 0.6871000 0.7616000 35.0 70.0 18 680.35 0.00 100.00 0 100.00 1/1
chr1 237946964 rs790889 T C . PASS 0.2806000 0.4020000 0.6964000 0.3201000 0.4121000 0.4147000 36.59 70.0 50 1000.00 17.66 58.00 0 58.00 0/1
chr1 237951451 rs2256242 A G . PASS 0.7935000 0.5187000 0.7024000 0.5099000 0.5706000 0.6366000 36.54 70.0 39 924.16 0.00 66.67 0 66.67 0/1
chr1 237955649 rs72398272,rs68129840 CTGTG C . PASS 0.2640000 0.6254000 0.6746000 0.5696000 0.6227000 0.5282000 34.64 70.0 145 1000.00 7.44 36.55 0 36.55 0/1
chr1 237955664 . TG T . PASS . . . . . . 36.28 70.0 139 1000.00 1.35 35.97 1 35.97 0/1
chr1 237955664 . TGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGCGT TGTGTGTGTGTGTGCGCGCGTGTGTGTGTGTGTGCGT . PASS . . . . . . 36.54 70.0 78 478.13 7.69 15.38 1 100.00 0/1
chr1 237955664 . TGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGCGT TGT . PASS . . . . . . . . 78 478.13 15.44 62.82 1 100.00 0/1
chr1 237955665 . GT G . PASS . . . . . . 36.28 70.0 138 1000.00 2.14 36.23 1 36.23 0/1
chr1 237955666 . TG T . PASS . . . . . . 36.29 70.0 135 1000.00 6.71 37.78 1 37.78 0/1
chr1 237955667 . GT G . PASS . . . . . . 36.29 70.0 134 1000.00 7.55 38.06 1 38.06 0/1
chr1 237955668 . TG T . PASS . . . . . . 36.29 70.0 135 1000.00 5.23 37.78 1 37.78 0/1
chr1 237955669 . GT G . PASS . . . . . . 36.29 70.0 129 1000.00 7.30 39.53 1 39.53 0/1
chr1 237955670 . TG T . PASS . . . . . . 36.29 70.0 133 1000.00 3.89 38.35 1 38.35 0/1
chr1 237955671 . GT G . PASS . . . . . . 36.32 70.0 128 1000.00 6.62 39.84 1 41.41 0/1
chr1 237955672 . TG T . PASS . . . . . . 36.29 70.0 131 1000.00 2.51 38.93 1 38.93 0/1
chr1 237955673 . GT G . PASS . . . . . . 36.13 70.0 127 1000.00 5.93 40.16 1 54.33 0/1
chr1 237955674 . TG T . PASS . . . . . . 36.29 70.0 123 1000.00 1.43 41.46 1 41.46 0/1
chr1 237955675 . GT G . PASS . . . . . . 36.31 70.0 120 1000.00 0.78 42.50 1 43.33 0/1
chr1 237955676 . TG T . PASS . . . . . . 36.29 70.0 118 1000.00 0.90 43.22 1 43.22 0/1
chr1 237955677 . GT G . PASS . . . . . . 36.3 70.0 116 1000.00 2.74 43.97 1 88.79 0/1
chr1 237955678 rs144369382 T C . PASS 0.2640000 0.6254000 0.6746000 0.5696000 0.6227000 0.5282000 36.3 70.0 116 1000.00 4.77 44.83 1 88.79 0/1
chr1 237955678 . TG T . PASS . . . . . . 36.29 70.0 116 1000.00 1.01 43.97 1 43.97 0/1
chr1 237955679 . GT G . PASS . . . . . . 36.54 70.0 115 1000.00 1.94 44.35 1 90.43 0/1
chr1 237955680 rs146659498 T C . PASS 0.2640000 0.6254000 0.6746000 0.5696000 0.6227000 0.5282000 36.54 70.0 115 1000.00 2.17 46.09 1 90.43 0/1
chr1 237955680 . TG T . PASS . . . . . . 36.31 70.0 116 1000.00 0.93 44.83 1 44.83 0/1
chr1 237955681 . GC G . PASS . . . . . . 35.98 70.0 112 1000.00 0.55 46.43 1 52.68 0/1
chr1 237955682 . CG C . PASS . . . . . . 36.29 70.0 114 1000.00 2.89 44.74 1 44.74 0/1
chr1 237955683 . GT G . PASS . . . . . . 36.11 70.0 110 1000.00 3.21 46.36 1 49.09 0/1
chr1 237955684 . TG T . PASS . . . . . . 36.29 70.0 113 1000.00 3.85 45.13 1 45.13 0/1
chr1 237955685 . GT G . PASS . . . . . . 36.31 70.0 111 1000.00 5.83 45.95 1 46.85 0/1
chr1 237955686 . TG T . PASS . . . . . . 36.29 70.0 112 1000.00 3.05 45.54 1 45.54 0/1
chr1 237955687 . GT G . PASS . . . . . . 36.29 70.0 109 1000.00 2.37 46.79 1 46.79 0/1
chr1 237955688 . TG T . PASS . . . . . . 36.29 70.0 109 1000.00 2.37 46.79 1 46.79 0/1
chr1 237955689 . GT G . PASS . . . . . . 36.29 70.0 106 1000.00 3.55 48.11 1 48.11 0/1
chr1 237955690 . TG T . PASS . . . . . . 36.29 70.0 108 1000.00 3.38 47.22 1 47.22 0/1
chr1 237955691 . GT G . PASS . . . . . . 36.29 70.0 107 1000.00 2.53 47.66 1 47.66 0/1
chr1 237955692 . TG T . PASS . . . . . . 36.31 70.0 108 1000.00 1.57 48.15 1 48.15 0/1
chr1 237955693 . GT G . PASS . . . . . . 36.29 70.0 106 1000.00 3.55 48.11 1 48.11 0/1
chr1 237955694 . TG T . PASS . . . . . . 36.29 70.0 106 1000.00 1.66 48.11 1 48.11 0/1
chr1 237955695 . GT G . PASS . . . . . . 36.29 70.0 101 1000.00 6.99 50.50 1 50.50 0/1
chr1 237955696 . TG T . PASS . . . . . . 36.32 70.0 100 1000.00 2.31 52.00 1 53.00 0/1
chr1 237955697 . GC G . PASS . . . . . . 36.35 70.0 90 1000.00 10.09 57.78 1 61.11 0/1
chr1 237955698 . CG C . PASS . . . . . . 34.33 70.0 100 478.13 42.38 21.00 1 21.00 0/1
chr1 237955699 . GT G . PASS . . . . . . 33.91 70.0 99 484.14 39.25 21.21 1 22.22 0/1
chr1 237955708 . T C . PASS 0.0015000 0.0216000 0.0129000 0.0398000 0.0204000 0.0179710 35.77 70.0 83 1000.00 0.49 46.99 0 46.99 0/1
chr1 237957146 rs790902 G A . PASS 0.5295000 0.7968000 0.9454000 0.6312000 0.8538000 0.7340000 36.08 70.0 23 429.31 16.05 56.52 0 56.52 0/1
chr1 237957161 rs790901 A G . PASS 0.5688000 0.8040000 0.9494000 0.6501000 0.8926000 0.7576000 37.0 70.0 34 533.52 10.29 47.06 0 47.06 0/1
chr1 237957309 rs790900 A C . PASS 0.5772000 0.7925000 0.9494000 0.6431000 0.8620000 0.7508000 35.74 70.0 44 600.57 3.59 43.18 0 43.18 0/1
chr1 237965094 rs2794820 G T . PASS 0.4024000 0.4092000 0.6349000 0.3966000 0.4703000 0.4623000 37.0 70.0 20 153.80 26.67 30.00 0 30.00 0/1
chr1 237965131 rs9428384 G A . PASS 0.1944000 0.3948000 0.6349000 0.3956000 0.4703000 0.4052000 37.0 70.0 35 321.67 19.74 31.43 0 31.43 0/1
chr1 237969638 rs790879 A G . PASS 0.2179000 0.2709000 0.4960000 0.1928000 0.2771000 0.2877000 36.08 68.46 28 414.25 12.64 46.43 0 46.43 0/1
chr1 238045995 rs2275694 T C . PASS 0.3707000 0.1916000 0.4276000 0.2107000 0.2464000 0.3009000 33.73 70.0 28 306.71 16.88 39.29 0 39.29 0/1
chr1 238053524 rs538499 T C . PASS 0.3275000 0.3458000 0.6310000 0.3330000 0.5675000 0.4391000 37.0 70.0 42 1000.00 6.57 69.05 0 69.05 0/1
chr1 238090257 rs548164 A G . PASS 0.7519000 0.3156000 0.4355000 0.2465000 0.4049000 0.4585000 35.91 69.91 35 309.65 10.91 31.43 0 31.43 0/1
chr1 238090514 rs545540 T A . PASS 0.7292000 0.3141000 0.4355000 0.2465000 0.4049000 0.4523000 36.54 69.88 40 917.00 7.31 65.00 0 65.00 0/1
chr1 238090601 rs80150242 GGGGTCA G . PASS 0.7284000 0.3141000 0.4355000 0.2465000 0.4049000 0.4521000 37.0 69.75 17 408.04 2.94 70.59 0 70.59 0/1
chr1 238090615 rs2790341 T C . PASS 0.7292000 0.3141000 0.4355000 0.2465000 0.4049000 0.4523000 37.0 69.73 15 381.85 3.64 73.33 0 73.33 0/1
chr1 238463851 rs568276 G T . PASS 0.6936000 0.3790000 0.4464000 0.3519000 0.3119000 0.4571000 36.14 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 238654738 rs72761444 G T . PASS 0.0015000 0.0144000 0.0000000 0.0398000 0.0112000 0.0125800 35.0 70.0 12 165.87 0.00 50.00 0 50.00 0/1
chr1 238820015 rs12090387 T C . PASS 0.3782000 0.5000000 0.6369000 0.5875000 0.5941000 0.5314000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 239215774 rs1396901 T C . PASS 0.9168000 0.8213000 0.9385000 0.8509000 0.9162000 0.8946000 37.0 70.0 14 549.30 0.00 100.00 0 100.00 1/1
chr1 239215857 rs56037071,rs35410036,rs71729035 C CT . PASS 0.3011000 0.3631000 0.4226000 0.5020000 0.4836000 0.4101000 35.98 70.0 67 1000.00 2.05 71.64 0 88.06 0/1
chr1 239215927 rs12736994 A T . PASS 0.2027000 0.3487000 0.3859000 0.4911000 0.5174000 0.3792000 35.35 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 239216054 rs6688183 A G . PASS 0.5976000 0.7233000 0.8591000 0.8509000 0.9131000 0.7802000 36.64 69.67 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 239216186 rs12754904 G A . PASS 0.5976000 0.7233000 0.8621000 0.8509000 0.9131000 0.7808000 36.82 69.18 66 1000.00 0.00 100.00 0 100.00 1/1
chr1 239216237 rs34669077 GCA GTG . PASS . . . . . . 37.0 69.75 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 239216264 rs6690909 T C . PASS 0.5976000 0.7233000 0.8611000 0.8509000 0.9131000 0.7806000 36.56 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 239858725 rs6429153 A C . PASS 0.3608000 0.4755000 0.4722000 0.4851000 0.4673000 0.4449000 36.57 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 240176600 rs10802825 A G . PASS 0.6936000 0.4438000 0.3274000 0.4026000 0.3027000 0.4505000 35.5 70.0 47 148.23 10.64 17.02 0 17.02 0/1
chr1 240176633 rs10802826 G A . PASS 0.3011000 0.2450000 0.2877000 0.2495000 0.1800000 0.2566000 35.67 70.0 40 211.07 28.33 22.50 0 22.50 0/1
chr1 240176653 rs10802827 A G . PASS 0.6936000 0.4438000 0.3274000 0.4026000 0.3047000 0.4509000 34.6 70.0 36 252.86 37.78 27.78 0 27.78 0/1
chr1 240176705 rs10802828 G A . PASS 0.6936000 0.4438000 0.3274000 0.4026000 0.3047000 0.4509000 37.0 70.0 14 134.24 71.43 35.71 0 35.71 0/1
chr1 240255568 rs140531536,rs72215772,rs71929261 GGGC G . PASS 0.7821000 0.7507000 0.4514000 0.7893000 0.7515000 0.7067000 35.62 69.38 66 995.11 11.17 48.48 0 48.48 0/1
chr1 240256822 rs10926124 C A . PASS 0.0900000 0.3357000 0.3006000 0.5249000 0.4796000 0.3299000 35.8 70.0 89 1000.00 4.36 56.18 0 56.18 0/1
chr1 240305899 rs12746598 C T . PASS 0.1082000 0.3617000 0.2510000 0.3360000 0.4018000 0.2752000 37.0 69.86 16 211.76 21.43 43.75 0 43.75 0/1
chr1 240305963 rs35489677 T TAA . PASS 0.0015000 0.0173000 0.0000000 0.0189000 0.0072000 0.0079872 37.0 68.5 37 300.04 4.42 29.73 0 29.73 0/1
chr1 240307389 rs2355833 C G . PASS 0.9123000 0.5922000 0.5198000 0.6680000 0.6912000 0.6967000 36.14 70.0 40 988.54 11.43 70.00 0 70.00 0/1
chr1 240307892 rs1539200 A G . PASS 0.9183000 0.5836000 0.5188000 0.6561000 0.6881000 0.6939000 37.0 69.79 38 646.79 26.32 50.00 0 50.00 0/1
chr1 240308147 rs10926139 T C . PASS 0.9213000 0.5908000 0.5188000 0.6879000 0.7127000 0.7069000 36.0 69.92 39 828.61 5.77 61.54 0 61.54 0/1
chr1 240308200 rs12127949 T C . PASS 0.9183000 0.5821000 0.5000000 0.6561000 0.6912000 0.6905000 37.0 70.0 37 858.66 10.59 64.86 0 64.86 0/1
chr1 240308348 rs10926140 C G . PASS 0.9183000 0.5850000 0.5020000 0.6590000 0.6953000 0.6927000 36.12 69.73 62 1000.00 2.44 66.13 0 66.13 0/1
chr1 240308366 rs12127948 A G . PASS 0.2322000 0.3761000 0.2520000 0.3439000 0.4039000 0.3121000 36.71 69.71 62 1000.00 3.07 67.74 0 67.74 0/1
chr1 240308382 rs10926141 C A . PASS 0.6362000 0.4914000 0.4484000 0.5239000 0.6431000 0.5571000 36.4 69.72 60 1000.00 8.33 66.67 0 66.67 0/1
chr1 240351628 rs4659948 T C . PASS 0.7905000 0.4726000 0.3601000 0.5845000 0.6493000 0.5909000 33.73 70.0 18 336.80 5.05 61.11 0 61.11 0/1
chr1 240370629 rs10926166 C G . PASS 0.2617000 0.2507000 0.1032000 0.4066000 0.4151000 0.2873000 36.43 70.0 47 687.08 21.68 44.68 0 44.68 0/1
chr1 240371106 rs11586155 C T . PASS . . . . . . 35.12 64.72 61 1000.00 16.50 52.46 0 52.46 0/1
chr1 240371211 rs201587786 G T . PASS 0.2330000 0.1599000 0.0526000 0.2396000 0.2229000 0.1859000 35.29 67.86 50 320.17 18.67 24.00 0 28.00 0/1
chr1 240371223 . C T . PASS 0.2088000 0.2046000 0.0883000 0.2674000 0.3200000 0.2175000 34.23 65.54 50 324.03 44.62 26.00 0 26.00 0/1
chr1 240371328 rs71646895 G A . PASS . . . . . . 35.34 52.0 90 833.22 17.94 31.11 0 32.22 0/1
chr1 240371554 rs12732924 A G . PASS 0.9992000 0.8890000 0.9990000 0.9245000 0.9479000 0.9589000 35.24 68.12 34 1000.00 0.00 100.00 0 100.00 1/1
chr1 240421383 rs10926181 G A . PASS 0.9539000 0.7795000 0.8403000 0.6103000 0.5971000 0.7682000 37.0 70.0 21 238.48 16.67 38.10 0 38.10 0/1
chr1 240421437 rs10926182 C T . PASS 0.3676000 0.5648000 0.5615000 0.3658000 0.3139000 0.4231000 37.0 70.0 10 62.74 0.00 30.00 0 30.00 0/1
chr1 240492543 rs6686353 G A . PASS 0.9206000 0.6427000 0.5000000 0.4712000 0.4928000 0.6236000 37.0 70.0 40 766.08 3.18 55.00 0 55.00 0/1
chr1 240492734 rs3795677 G A . PASS 0.3381000 0.3588000 0.3185000 0.2883000 0.3067000 0.3209000 37.0 70.0 62 1000.00 6.45 50.00 0 50.00 0/1
chr1 240497265 rs10157874 A C . PASS 0.9244000 0.7046000 0.5278000 0.5119000 0.5092000 0.6502000 34.82 70.0 38 719.91 5.26 57.89 0 57.89 0/1
chr1 240497598 rs12122068 T C . PASS 0.0673000 0.3761000 0.2510000 0.2237000 0.2045000 0.2053000 35.29 70.0 13 208.78 10.99 53.85 0 53.85 0/1
chr1 240524580 rs12095342 C T . PASS 0.6861000 0.6311000 0.5099000 0.4861000 0.5061000 0.5677000 36.65 70.0 123 1000.00 1.56 56.10 0 56.10 0/1
chr1 240637571 rs882869 A G . PASS 0.0930000 0.4092000 0.4851000 0.3260000 0.2853000 0.3001000 37.0 70.0 46 539.16 19.44 36.96 0 36.96 0/1
chr1 240656797 rs11806449 G A . PASS 0.0530000 0.1599000 0.3214000 0.1819000 0.3364000 0.2031000 35.84 70.0 66 1000.00 4.69 46.97 0 46.97 0/1
chr1 240656841 rs45519645 A T . PASS 0.1120000 0.2176000 0.3462000 0.2525000 0.3855000 0.2554000 37.0 70.0 31 371.32 5.91 38.71 0 38.71 0/1
chr1 240656852 rs34695275 T TA . PASS 0.0530000 0.1614000 0.3204000 0.1799000 0.3374000 0.2029000 37.0 70.0 24 213.87 25.00 25.00 0 33.33 0/1
chr1 240934479 rs4628499 A C . PASS 0.7095000 0.6556000 0.5942000 0.7883000 0.6513000 0.6833000 36.52 69.76 25 992.61 0.00 100.00 0 100.00 1/1
chr1 240975213 rs2275742 T C . PASS 0.2148000 0.4280000 0.4683000 0.5557000 0.4233000 0.4046000 37.0 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 240977964 rs12744536 G T . PASS 0.3752000 0.5778000 0.4851000 0.7058000 0.5665000 0.5292000 36.64 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 241146322 rs7520707 A G . PASS 0.3079000 0.4006000 0.2857000 0.4314000 0.3845000 0.3560000 37.0 69.05 21 841.70 0.00 100.00 0 100.00 1/1
chr1 241161775 rs670659 C T . PASS 0.1641000 0.4438000 0.3323000 0.3857000 0.3252000 0.3127000 35.67 70.0 18 692.36 0.00 100.00 0 100.00 1/1
chr1 241178944 rs497743 G T . PASS 0.6407000 0.4510000 0.3274000 0.3777000 0.5123000 0.4734000 35.8 70.0 34 266.74 0.00 29.41 0 29.41 0/1
chr1 241519098 rs4659599 T A . PASS 0.8321000 0.9899000 0.9921000 0.9881000 0.9898000 0.9483000 37.0 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 241540465 rs7521878 T A . PASS 0.6589000 0.5519000 0.6151000 0.4831000 0.5961000 0.5877000 37.0 70.0 28 672.74 19.55 67.86 0 67.86 0/1
chr1 241540533 rs6429270 A C . PASS 0.6634000 0.5519000 0.6151000 0.4831000 0.5961000 0.5889000 37.0 70.0 24 434.16 13.46 54.17 0 54.17 0/1
chr1 241663902 rs144131869 T TGAGA . PASS . . . . . . 36.49 70.0 72 1000.00 16.37 26.39 0 95.83 0/1
chr1 241663902 rs59736583 T TGAGAGA . PASS . . . . . . 36.38 70.0 72 1000.00 10.84 56.94 0 95.83 0/1
chr1 241667244 rs4659607 G T . PASS 0.8018000 0.6859000 0.5694000 0.7048000 0.8855000 0.7358000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 241712134 rs11556464 C T . PASS 0.5280000 0.4236000 0.2788000 0.3042000 0.2965000 0.3732000 37.0 70.0 20 799.93 0.00 100.00 0 100.00 1/1
chr1 241755348 rs1053230 C T . PASS 0.0091000 0.1282000 0.0526000 0.2237000 0.2076000 0.1162000 36.54 70.0 59 863.97 8.47 44.07 0 44.07 0/1
chr1 241761349 rs45572340 T C . PASS 0.0287000 0.1470000 0.0764000 0.2227000 0.2168000 0.1304000 37.0 70.0 30 336.71 17.58 36.67 0 36.67 0/1
chr1 241767930 rs632966 G A . PASS 0.9175000 0.8818000 0.8333000 0.9523000 0.9427000 0.9075000 36.8 70.0 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 241838057 rs67170285 C T . PASS 0.4266000 0.5173000 0.3532000 0.6571000 0.4949000 0.4840000 36.37 70.0 19 746.14 0.00 100.00 0 100.00 1/1
chr1 241838065 rs66585415 T C . PASS 0.5590000 0.5476000 0.4018000 0.7197000 0.6104000 0.5681000 37.0 70.0 17 674.61 0.00 100.00 0 100.00 1/1
chr1 241847018 rs10802979 C T . PASS 0.6846000 0.7176000 0.5923000 0.7833000 0.6881000 0.6911000 36.48 69.13 23 913.22 0.00 100.00 0 100.00 1/1
chr1 241864716 rs10926541 G A . PASS 0.5265000 0.4697000 0.3879000 0.5746000 0.6125000 0.5172000 36.45 70.0 44 1000.00 0.00 100.00 0 100.00 1/1
chr1 241913062 rs11432682 C CT . PASS 0.6490000 0.5937000 0.5546000 0.5984000 0.6329000 0.6090000 35.59 70.0 35 532.67 15.46 48.57 0 48.57 0/1
chr1 241933876 rs11809239 A G . PASS 0.1876000 0.5720000 0.5694000 0.5944000 0.6299000 0.4858000 37.0 70.0 18 122.20 2.22 27.78 0 27.78 0/1
chr1 241946766 rs953597 A C . PASS 0.4781000 0.5101000 0.4137000 0.6571000 0.4980000 0.5094000 35.5 70.0 12 249.41 0.00 66.67 0 66.67 0/1
chr1 241951106 rs6429313 A G . PASS 0.4599000 0.4092000 0.4325000 0.4095000 0.3681000 0.4193000 37.0 70.0 13 179.02 10.26 46.15 0 46.15 0/1
chr1 241958401 rs61386497,rs146518112 C CTTGT . PASS 0.1906000 0.2795000 0.4325000 0.2465000 0.3517000 0.2943000 35.71 70.0 13 196.20 13.19 53.85 0 53.85 0/1
chr1 241958409 rs55865277 C T . PASS 0.1906000 0.2795000 0.4325000 0.2465000 0.3497000 0.2939000 37.0 70.0 16 253.53 0.00 50.00 0 50.00 0/1
chr1 241964559 rs4658661 C T . PASS 0.1899000 0.3934000 0.4077000 0.5060000 0.4765000 0.3814000 37.0 70.0 50 527.13 5.65 34.00 0 34.00 0/1
chr1 242023898 rs4149909 A G . PASS 0.0015000 0.0187000 0.0000000 0.0378000 0.0102000 0.0125800 37.0 70.0 53 643.41 23.21 37.74 0 37.74 0/1
chr1 242030151 rs735943 A G . PASS 0.6150000 0.6902000 0.7956000 0.5716000 0.5327000 0.6370000 37.0 70.0 22 883.47 0.00 100.00 0 100.00 1/1
chr1 242035438 rs4149965 G A . PASS 0.0061000 0.1354000 0.0000000 0.2505000 0.0982000 0.0899000 35.24 70.0 81 1000.00 6.02 50.62 0 50.62 0/1
chr1 242042545 rs1776148 A G . PASS 0.6884000 0.6859000 0.8085000 0.6511000 0.5716000 0.6819000 36.79 70.0 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 242045275 rs1635498 C T . PASS 0.8714000 0.9784000 0.8690000 0.9672000 0.9243000 0.9153000 36.03 70.0 37 1000.00 0.00 100.00 0 100.00 1/1
chr1 242048674 rs9350 C T . PASS 0.1808000 0.3199000 0.4683000 0.1521000 0.1779000 0.2516000 36.61 70.0 55 1000.00 2.23 56.36 0 56.36 0/1
chr1 242079372 rs7512631 T C . PASS 0.9123000 0.9928000 1.0000000 1.0000000 1.0000000 0.9758000 37.0 70.0 17 674.61 0.00 100.00 0 100.00 1/1
chr1 242079498 rs7555402 A G . PASS 0.4637000 0.6499000 0.7163000 0.4662000 0.4847000 0.5449000 37.0 70.0 12 465.77 0.00 100.00 0 100.00 1/1
chr1 242121011 rs34082719,rs3862973 ATAAG A . PASS 0.3094000 0.3213000 0.2421000 0.3738000 0.2751000 0.3037000 33.43 70.0 13 183.20 4.40 53.85 0 53.85 0/1
chr1 242121052 rs3851305 C G . PASS 0.3094000 0.3228000 0.2421000 0.3757000 0.2710000 0.3035000 36.25 70.0 26 541.44 1.92 61.54 0 61.54 0/1
chr1 242121061 rs3915586 C T . PASS 0.3094000 0.3228000 0.2421000 0.3757000 0.2710000 0.3035000 35.11 70.0 32 628.82 2.96 59.38 0 59.38 0/1
chr1 242121540 rs56335758 G A . PASS 0.2844000 0.3228000 0.2242000 0.3777000 0.2730000 0.2941000 36.48 69.57 96 1000.00 8.51 47.92 0 47.92 0/1
chr1 242121796 rs3851304 G T . PASS 0.2648000 0.3242000 0.2331000 0.3738000 0.2812000 0.2917000 37.0 70.0 64 647.92 4.76 32.81 0 32.81 0/1
chr1 242156537 rs28627534 G A . PASS 0.4992000 0.4049000 0.3899000 0.4980000 0.5020000 0.4645000 37.0 70.0 11 59.73 24.24 27.27 0 27.27 0/1
chr1 242156949 rs28449792 C T . PASS 0.0514000 0.1657000 0.0714000 0.2624000 0.2106000 0.1448000 37.0 69.75 38 354.40 11.40 31.58 0 31.58 0/1
chr1 242383201 rs1973498 T G . PASS 0.2920000 0.4222000 0.5536000 0.2823000 0.3793000 0.3778000 37.0 70.0 13 216.64 0.00 53.85 0 53.85 0/1
chr1 242509589 rs6429349 C A . PASS 0.8230000 0.9827000 0.9643000 0.9920000 0.9724000 0.9367000 36.2 68.62 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 242511556 rs112478548 AACAAAG A . PASS 0.5560000 0.7810000 0.6915000 0.8072000 0.7311000 0.6991000 35.98 68.76 90 1000.00 0.00 100.00 0 100.00 1/1
chr1 242540674 . G A . PASS . . . . . . 34.0 70.0 17 71.43 5.88 23.53 0 23.53 0/1
chr1 242546373 rs4658481 A T . PASS 0.4115000 0.3127000 0.6052000 0.4901000 0.4100000 0.4523000 36.74 70.0 103 1000.00 0.51 44.66 0 44.66 0/1
chr1 242546534 rs893702 C T . PASS 0.8722000 0.9409000 0.8641000 0.9294000 0.8047000 0.8784000 37.0 70.0 13 507.53 0.00 100.00 0 100.00 1/1
chr1 242859680 rs10803073 C T . PASS 0.3177000 0.4697000 0.4960000 0.6352000 0.5562000 0.4850000 36.35 70.0 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 243138336 rs12131267 G A . PASS 0.0711000 0.3790000 0.3909000 0.2962000 0.2669000 0.2616000 36.29 69.0 24 593.38 12.75 70.83 0 70.83 0/1
chr1 243138354 rs12127896 A G . PASS 0.3048000 0.5764000 0.4603000 0.6352000 0.6442000 0.5064000 36.11 68.93 27 984.75 0.30 92.59 0 100.00 1/1
chr1 243138403 rs12138844 C T . PASS 0.1059000 0.3847000 0.3929000 0.2962000 0.2669000 0.2720000 36.33 67.78 30 617.09 11.11 60.00 0 60.00 0/1
chr1 243138492 rs151302221 GTCTCAATGGATCTAGACCTTCATCGCCCTCTGATCGCCGATCAC G . PASS . . . . . . 37.0 65.4 15 581.51 0.00 100.00 0 100.00 1/1
chr1 243138539 . CTG CAT . PASS . . . . . . 36.57 65.57 14 545.15 0.00 100.00 0 100.00 1/1
chr1 243138543 rs200792404 G A . PASS . . . . . . 37.0 65.57 14 549.30 0.00 100.00 0 100.00 1/1
chr1 243188415 rs59017746 C CA . PASS 0.6619000 0.4957000 0.5893000 0.4503000 0.6104000 0.5717000 36.08 66.27 72 767.48 22.44 34.72 0 34.72 0/1
chr1 243322612 rs115049897 C T . PASS 0.4788000 0.3833000 0.5079000 0.3917000 0.5665000 0.4710000 35.0 59.0 51 52.65 31.37 11.76 0 11.76 0/1
chr1 243327785 rs201167561 G A . PASS 0.0000000 0.0000000 0.0000000 0.0050000 0.0010000 0.0011981 35.8 59.3 34 270.88 28.24 29.41 0 29.41 0/1
chr1 243329049 rs3766664 G A . PASS . . . . . . 34.6 65.3 96 465.95 9.58 20.83 0 20.83 0/1
chr1 243329075 rs61833876 T C . PASS . . . . . . 35.59 63.53 81 409.81 18.30 20.99 0 20.99 0/1
chr1 243332884 rs140816120 AAG A . PASS 0.1846000 0.2608000 0.3065000 0.3777000 0.4908000 0.3183000 36.6 50.73 29 380.97 1.38 51.72 0 51.72 0/1
chr1 243362331 rs2789172 C T . PASS 0.8169000 0.8746000 0.9425000 0.8966000 0.8978000 0.8820000 37.0 60.55 11 424.00 0.00 100.00 0 100.00 1/1
chr1 243385144 rs72757676 A T . PASS 0.0000000 0.0000000 0.0000000 0.0010000 0.0000000 0.0001997 37.0 70.0 18 410.44 16.67 66.67 0 66.67 0/1
chr1 243419429 rs3904682 T A . PASS 0.0635000 0.5548000 0.7381000 0.5209000 0.3344000 0.4121000 37.0 70.0 28 338.57 1.30 39.29 0 39.29 0/1
chr1 243433654 rs2275154 A G . PASS 0.1619000 0.2378000 0.1944000 0.3439000 0.5276000 0.2869000 37.0 70.0 31 166.62 51.61 22.58 0 22.58 0/1
chr1 243434558 rs2130597 A T . PASS 0.8926000 0.9885000 0.9921000 0.9970000 0.9928000 0.9665000 37.0 70.0 10 378.08 0.00 100.00 0 100.00 1/1
chr1 243493907 rs2275155 A T . PASS 0.1702000 0.2147000 0.1935000 0.3231000 0.4755000 0.2714000 36.17 70.0 65 955.06 6.47 44.62 0 44.62 0/1
chr1 243507680 rs3215963 C CA . PASS 0.2791000 0.1945000 0.0278000 0.3131000 0.3517000 0.2378000 37.0 70.0 39 753.50 11.19 56.41 0 56.41 0/1
chr1 243579112 rs10927011 G A . PASS 0.0938000 0.5403000 0.7847000 0.4980000 0.4192000 0.4395000 36.57 69.29 60 944.49 3.33 46.67 0 46.67 0/1
chr1 243864967 rs67319115,rs74162707 C CAA . PASS . . . . . . 35.0 70.0 14 411.04 47.62 21.43 0 85.71 0/1
chr1 243864967 rs67319115,rs74162707 C CA . PASS 0.4970000 0.5778000 0.4742000 0.5835000 0.4888000 0.5194000 35.5 70.0 14 411.04 28.57 50.00 0 85.71 0/1
chr1 244213736 rs5782283,rs60118813 A ACC . PASS . . . . . . 35.71 70.0 58 1000.00 8.28 25.86 0 94.83 0/1
chr1 244213736 rs5782283,rs60118813 A AC . PASS 0.5325000 0.5231000 0.5417000 0.5199000 0.5644000 0.5367000 35.22 70.0 58 1000.00 1.72 68.97 0 94.83 0/1
chr1 244601152 rs3127465 C T . PASS 0.9455000 0.8545000 0.7718000 0.8320000 0.6718000 0.8217000 34.43 70.0 26 438.03 2.20 53.85 0 53.85 0/1
chr1 244624887 rs3124058 T C . PASS 0.6914000 0.6153000 0.7361000 0.6352000 0.4601000 0.6334000 37.0 70.0 20 492.11 2.86 70.00 0 70.00 0/1
chr1 244723920 rs7522899 C G . PASS 0.4334000 0.2464000 0.3760000 0.0775000 0.1728000 0.2736000 37.0 70.0 34 111.66 0.00 17.65 0 17.65 0/1
chr1 244724092 rs7544794 G A . PASS 0.4334000 0.2435000 0.3760000 0.0775000 0.1728000 0.2732000 37.0 70.0 112 1000.00 10.25 41.07 0 41.07 0/1
chr1 244735858 rs10927267 A G . PASS 0.4289000 0.2464000 0.3730000 0.0785000 0.1728000 0.2720000 37.0 70.0 72 1000.00 3.23 43.06 0 43.06 0/1
chr1 244747150 rs6429487 G A . PASS 0.3797000 0.2378000 0.3720000 0.0755000 0.1697000 0.2564000 37.0 70.0 25 435.30 4.31 52.00 0 52.00 0/1
chr1 244747292 . GCG GTA . PASS . . . . . . 36.33 70.0 19 289.28 4.68 47.37 0 47.37 0/1
chr1 244754961 rs41269387 C A . PASS 0.0431000 0.2104000 0.3710000 0.0736000 0.1524000 0.1597000 37.0 70.0 25 264.06 16.89 36.00 0 36.00 0/1
chr1 244803205 rs10572994 CT C . PASS . . . . . . 34.12 70.0 18 574.71 6.54 94.44 0 94.44 1/1
chr1 244891672 rs7540522 A T . PASS 0.3548000 0.6974000 0.5387000 0.5974000 0.5900000 0.5339000 36.34 70.0 127 1000.00 0.00 100.00 0 100.00 1/1
chr1 245005373 rs10927335 A G . PASS 0.4455000 0.1412000 0.0119000 0.2058000 0.1483000 0.2099000 36.2 70.0 32 485.76 7.50 46.88 0 46.88 0/1
chr1 245005492 rs150123625 T TG . PASS 0.1536000 0.1009000 0.0109000 0.1740000 0.1288000 0.1168000 36.37 70.0 36 625.21 10.82 52.78 0 52.78 0/1
chr1 245006492 rs59190751,rs199795132 T TAGAAA . PASS 0.2126000 0.0490000 0.0030000 0.0835000 0.0245000 0.0851000 36.29 68.71 31 135.03 4.61 22.58 0 22.58 0/1
chr1 245018456 rs113724064,rs59942516 TAGCA T . PASS 0.4402000 0.1282000 0.0149000 0.1928000 0.1452000 0.2041000 35.14 70.0 13 198.22 8.79 53.85 0 53.85 0/1
chr1 245018624 rs10927336 C A . PASS 0.1490000 0.0865000 0.0139000 0.1610000 0.1247000 0.1108000 35.29 70.0 11 210.66 7.79 63.64 0 63.64 0/1
chr1 245021132 rs9730334 C G . PASS 0.4213000 0.1268000 0.0149000 0.1928000 0.1452000 0.1989000 33.0 70.0 13 150.85 2.56 46.15 0 46.15 0/1
chr1 245025692 rs12124462 A T . PASS 0.4206000 0.1398000 0.0159000 0.2028000 0.1493000 0.2035000 35.0 70.0 14 159.86 9.52 42.86 0 42.86 0/1
chr1 245025697 . T TAA . PASS . . . . . . 36.33 70.0 16 617.25 30.00 31.25 0 100.00 0/1
chr1 245025697 . T TAAA . PASS . . . . . . 37.0 70.0 16 617.25 16.67 37.50 0 100.00 0/1
chr1 245133662 rs61844237 G C . PASS 0.0144000 0.3501000 0.5903000 0.4712000 0.5399000 0.3712000 37.0 68.33 12 461.62 0.00 100.00 0 100.00 1/1
chr1 245222634 rs694793 C G . PASS 0.7950000 0.9496000 0.8532000 0.9980000 0.8804000 0.8856000 35.29 70.0 14 521.13 0.00 100.00 0 100.00 1/1
chr1 245222839 rs579269 G T . PASS 0.9070000 0.9986000 1.0000000 1.0000000 1.0000000 0.9752000 35.8 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 245312295 rs4658439 G A . PASS 0.6362000 0.5418000 0.4157000 0.4712000 0.3425000 0.4882000 35.83 70.0 81 1000.00 8.49 50.62 0 50.62 0/1
chr1 245318688 rs12409851 C T . PASS 0.2148000 0.3718000 0.5823000 0.3499000 0.5624000 0.4056000 37.0 70.0 17 334.07 18.82 58.82 0 58.82 0/1
chr1 245703990 rs9919234 G T . PASS 0.6846000 0.5476000 0.6448000 0.5775000 0.6288000 0.6252000 37.0 70.0 10 100.36 20.00 40.00 0 40.00 0/1
chr1 245847455 rs72764846 G A . PASS 0.0348000 0.0922000 0.0218000 0.1928000 0.0389000 0.0727000 35.91 70.0 23 345.76 3.16 47.83 0 47.83 0/1
chr1 245849000 rs61744485 C T . PASS 0.0719000 0.0965000 0.0208000 0.1889000 0.0378000 0.0819000 36.44 70.0 79 1000.00 3.59 54.43 0 54.43 0/1
chr1 245849444 rs201841118 C T . PASS 0.0000000 0.0000000 0.0000000 0.0040000 0.0051000 0.0017971 37.0 70.0 51 1000.00 12.16 58.82 0 58.82 0/1
chr1 245850506 rs3806273 G C . PASS 0.1074000 0.1513000 0.1052000 0.0159000 0.0348000 0.0805000 37.0 70.0 55 925.65 5.66 49.09 0 49.09 0/1
chr1 245850513 rs113972282 C G . PASS 0.0000000 0.0000000 0.0000000 0.0040000 0.0051000 0.0017971 35.62 70.0 53 853.86 5.95 49.06 0 49.06 0/1
chr1 245851304 rs6701084 A G . PASS 0.9985000 0.9784000 1.0000000 0.9722000 0.9939000 0.9898000 36.62 70.0 96 1000.00 0.00 100.00 0 100.00 1/1
chr1 245861376 rs72764865 G A . PASS 0.0000000 0.0000000 0.0000000 0.0040000 0.0041000 0.0015974 34.33 70.0 35 214.09 7.62 25.71 0 25.71 0/1
chr1 245861571 rs3205034 C T . PASS 0.3298000 0.4481000 0.3780000 0.5537000 0.3272000 0.4004000 36.37 69.85 133 1000.00 0.00 100.00 0 100.00 1/1
chr1 246021941 rs2362587 T C . PASS 0.2224000 0.5173000 0.1925000 0.7177000 0.3896000 0.3894000 36.57 70.0 67 923.42 4.48 41.79 0 41.79 0/1
chr1 246022071 rs2185370 C T . PASS 0.2042000 0.5130000 0.1925000 0.7207000 0.3896000 0.3846000 37.0 70.0 13 137.25 6.15 38.46 0 38.46 0/1
chr1 246027024 rs12123124 A G . PASS 0.2231000 0.5187000 0.1925000 0.7217000 0.3885000 0.3904000 37.0 70.0 36 151.56 15.08 19.44 0 19.44 0/1
chr1 246027029 rs61830203 A T . PASS 0.2231000 0.5187000 0.1925000 0.7217000 0.3885000 0.3904000 37.0 70.0 40 218.91 8.33 22.50 0 22.50 0/1
chr1 246027034 rs2153404 G C . PASS 0.9660000 0.9971000 1.0000000 1.0000000 1.0000000 0.9906000 36.72 69.53 43 1000.00 0.00 100.00 0 100.00 1/1
chr1 246091115 rs2275313 C G . PASS 0.6929000 0.8473000 0.4831000 0.8847000 0.7873000 0.7290000 36.25 70.0 16 616.68 0.00 100.00 0 100.00 1/1
chr1 246548625 rs61841323 T A . PASS 0.3094000 0.5115000 0.3978000 0.4423000 0.4387000 0.4071000 37.0 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 246670281 rs6671418 G C . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.25 69.38 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 246670333 rs6426303 A G . PASS 0.9584000 0.9769000 1.0000000 0.9891000 0.9990000 0.9834000 36.15 69.72 71 1000.00 0.00 100.00 0 100.00 1/1
chr1 246670481 rs7520453 C G . PASS 0.4720000 0.8329000 0.9028000 0.8618000 0.7873000 0.7486000 36.6 69.83 120 1000.00 0.00 100.00 0 100.00 1/1
chr1 246670626 rs3841811,rs58962570 A AGGGGC . PASS . . . . . . 36.77 70.0 14 517.70 0.00 100.00 0 100.00 1/1
chr1 246674323 rs12405201 C T . PASS 0.1634000 0.2867000 0.2272000 0.4573000 0.2014000 0.2598000 37.0 70.0 10 146.28 0.00 50.00 0 50.00 0/1
chr1 246711816 rs5782396 GA G . PASS 0.1415000 0.3818000 0.3403000 0.4672000 0.4039000 0.3315000 36.18 70.0 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 246712033 rs1890160 A G . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 246714426 rs12140400 A G . PASS 0.0522000 0.2867000 0.1230000 0.2406000 0.1820000 0.1621000 37.0 68.0 27 303.97 13.33 37.04 0 37.04 0/1
chr1 246714587 rs10754526 G A . PASS 0.4312000 0.4063000 0.3423000 0.4702000 0.4049000 0.4125000 36.59 69.31 29 1000.00 0.00 100.00 0 100.00 1/1
chr1 246714630 rs35073704 ATG AAA . PASS . . . . . . 35.8 70.0 10 437.59 0.00 100.00 0 100.00 1/1
chr1 246714636 rs34850511 T A . PASS 0.4244000 0.4049000 0.3413000 0.4702000 0.4049000 0.4103000 36.14 68.57 14 533.14 0.00 100.00 0 100.00 1/1
chr1 246720798 rs3124071 G A . PASS 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000 36.42 69.48 62 1000.00 0.00 100.00 0 100.00 1/1
chr1 246727558 rs3120713 G T . PASS 0.9720000 0.9971000 1.0000000 1.0000000 1.0000000 0.9922000 37.0 70.0 13 503.38 0.00 100.00 0 100.00 1/1
chr1 246754778 rs35302997 G GA . PASS 0.4092000 0.3559000 0.6855000 0.2724000 0.5665000 0.4607000 35.29 70.0 13 151.43 20.51 46.15 0 46.15 0/1
chr1 246755124 rs6702823 T C . PASS 0.7950000 0.9236000 0.8919000 0.9056000 0.9427000 0.8834000 37.0 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 246797974 rs6680646 T A . PASS 0.2156000 0.3401000 0.6944000 0.2744000 0.5491000 0.4062000 34.0 70.0 12 237.41 16.67 66.67 0 66.67 0/1
chr1 246805434 . GG GTT . PASS . . . . . . . . 14 109.63 28.57 14.29 1 78.57 0/1
chr1 246805435 rs12748305 G T . PASS 0.7579000 0.4813000 0.7024000 0.4175000 0.6442000 0.6178000 35.67 67.78 13 288.17 34.19 69.23 1 69.23 0/1
chr1 246903654 rs3007322 G C . PASS 0.0227000 0.3314000 0.2312000 0.4016000 0.4223000 0.2616000 36.6 70.0 30 1000.00 0.00 100.00 0 100.00 1/1
chr1 246929483 rs12144408 A G . PASS 0.1067000 0.3401000 0.2302000 0.4225000 0.4673000 0.2977000 36.37 70.0 19 746.14 0.00 100.00 0 100.00 1/1
chr1 247005862 rs12401831 T C . PASS 0.2201000 0.3357000 0.1706000 0.2197000 0.1677000 0.2159000 37.0 70.0 19 411.58 0.00 63.16 0 63.16 0/1
chr1 247006051 rs12410563 G C . PASS 0.2201000 0.3357000 0.1706000 0.2197000 0.1656000 0.2155000 36.71 69.9 75 1000.00 2.47 54.67 0 54.67 0/1
chr1 247006160 rs5021094 G T . PASS 0.9803000 0.7176000 0.5923000 0.5447000 0.5389000 0.6921000 36.25 70.0 16 616.68 0.00 100.00 0 100.00 1/1
chr1 247007013 rs151137571 TAAATA T . PASS 0.1331000 0.2853000 0.3948000 0.2326000 0.2393000 0.2476000 37.0 70.0 18 234.94 22.22 44.44 0 44.44 0/1
chr1 247007042 . TAA TA . PASS 0.6135000 0.6066000 0.8016000 0.7346000 0.7986000 0.7109000 . . 28 496.66 11.90 42.86 1 100.00 0/1
chr1 247007042 . TAA TTT . PASS . . . . . . 36.6 70.0 28 496.66 4.76 53.57 1 100.00 0/1
chr1 247007043 rs4971284 A T . PASS 0.0779000 0.3300000 0.1925000 0.2187000 0.1646000 0.1811000 36.56 70.0 27 955.86 0.00 55.56 1 100.00 0/1
chr1 247007044 rs4971285 A T . PASS 0.0779000 0.3300000 0.1925000 0.2187000 0.1646000 0.1811000 35.88 70.0 28 496.66 4.76 53.57 1 57.14 0/1
chr1 247021138 rs41310593 A T . PASS 0.0061000 0.0490000 0.0010000 0.0606000 0.0102000 0.0228000 35.5 70.0 39 812.45 0.00 61.54 0 61.54 0/1
chr1 247025207 rs61853995 G A . PASS 0.0764000 0.3271000 0.1905000 0.2167000 0.1595000 0.1785000 37.0 70.0 12 140.26 16.67 41.67 0 41.67 0/1
chr1 247039256 rs12748665 A C . PASS 0.2163000 0.2882000 0.3313000 0.2256000 0.2014000 0.2484000 37.0 70.0 15 335.93 0.00 66.67 0 66.67 0/1
chr1 247048834 rs2642990 T C . PASS 0.9803000 0.6311000 0.6220000 0.5159000 0.5460000 0.6817000 36.14 69.5 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 247061466 rs12023594 C T . PASS 0.0870000 0.2666000 0.1935000 0.2117000 0.1585000 0.1723000 37.0 70.0 40 557.23 12.35 42.50 0 42.50 0/1
chr1 247068785 rs7551797 C T . PASS 0.2201000 0.2738000 0.1944000 0.2127000 0.1595000 0.2091000 37.0 70.0 35 446.97 5.71 40.00 0 40.00 0/1
chr1 247094670 rs138217683 C T . PASS 0.0666000 0.0173000 0.0833000 0.0209000 0.0194000 0.0447000 36.0 68.04 62 759.38 15.86 38.71 0 38.71 0/1
chr1 247109014 rs2642982 G C . PASS 0.4750000 0.5937000 0.5546000 0.5249000 0.3804000 0.4990000 36.74 69.57 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 247109168 rs6426191 G A . PASS 0.3238000 0.3977000 0.3284000 0.3817000 0.2065000 0.3237000 37.0 70.0 18 163.97 11.11 33.33 0 33.33 0/1
chr1 247111062 rs1779962 T C . PASS 0.6679000 0.6138000 0.5556000 0.5398000 0.3967000 0.5591000 36.8 70.0 59 1000.00 0.00 100.00 0 100.00 1/1
chr1 247151487 rs55762230 C T . PASS 0.0371000 0.0159000 0.0000000 0.0209000 0.0041000 0.0169730 36.66 70.0 89 1000.00 8.86 39.33 0 39.33 0/1
chr1 247162628 rs4384270 C T . PASS 0.3381000 0.0548000 0.0169000 0.0586000 0.1493000 0.1412000 37.0 70.0 58 711.90 13.48 37.93 0 37.93 0/1
chr1 247162658 rs2642973 C T . PASS 0.8268000 0.9265000 0.9742000 0.8330000 0.6196000 0.8311000 36.76 70.0 98 1000.00 0.00 100.00 0 100.00 1/1
chr1 247163187 rs2818870 T C . PASS 0.7837000 0.9251000 0.9742000 0.8340000 0.6207000 0.8199000 35.88 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 247201591 rs61748726 T C . PASS 0.0030000 0.0101000 0.0000000 0.0209000 0.0051000 0.0073882 36.68 70.0 88 1000.00 15.79 42.05 0 42.05 0/1
chr1 247202032 rs10924897 G T . PASS 0.5030000 0.2118000 0.0109000 0.3121000 0.2628000 0.2784000 36.56 70.0 27 1000.00 0.00 100.00 0 100.00 1/1
chr1 247206375 rs2172795 G A . PASS 0.8404000 0.3573000 0.1379000 0.4970000 0.5266000 0.5018000 36.02 69.92 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 247241795 rs41310571 C A . PASS 0.4009000 0.1744000 0.0020000 0.2078000 0.0859000 0.1889000 36.33 70.0 18 700.22 0.00 100.00 0 100.00 1/1
chr1 247241850 rs41305955 G C . PASS 0.5764000 0.1787000 0.1280000 0.2147000 0.3129000 0.3069000 37.0 70.0 50 940.68 3.11 54.00 0 54.00 0/1
chr1 247347252 rs28408877 C G . PASS 0.0779000 0.1931000 0.1954000 0.2694000 0.1472000 0.1695000 36.4 70.0 20 783.76 0.00 100.00 0 100.00 1/1
chr1 247393655 rs6693807 T C . PASS 0.2905000 0.2262000 0.2966000 0.2833000 0.3579000 0.2945000 37.0 69.0 25 1000.00 0.00 100.00 0 100.00 1/1
chr1 247420421 rs41308154 C T . PASS 0.0673000 0.1700000 0.4058000 0.2406000 0.2740000 0.2248000 36.04 70.0 60 807.17 6.00 41.67 0 41.67 0/1
chr1 247471121 rs12023326 T C . PASS 0.0325000 0.1859000 0.4137000 0.2724000 0.3139000 0.2336000 36.33 70.0 36 1000.00 0.00 100.00 0 100.00 1/1
chr1 247486421 rs6692645 G C . PASS 0.3880000 0.4409000 0.4802000 0.6630000 0.5613000 0.5030000 36.59 70.0 58 1000.00 0.00 100.00 0 100.00 1/1
chr1 247494162 rs4925621 G A . PASS 0.3843000 0.4337000 0.4405000 0.6660000 0.5082000 0.4832000 36.72 69.54 87 1000.00 0.00 100.00 0 100.00 1/1
chr1 247587477 rs3806268 G A . PASS 0.0348000 0.3617000 0.5437000 0.5487000 0.5552000 0.3874000 36.2 70.0 90 1000.00 0.00 100.00 0 100.00 1/1
chr1 247587531 rs4925543 A G . PASS 0.8434000 0.9510000 0.9980000 0.9592000 0.8804000 0.9199000 36.36 70.0 75 1000.00 0.00 100.00 0 100.00 1/1
chr1 247597365 rs10925022 G A . PASS 0.7481000 0.8127000 0.8492000 0.8161000 0.7362000 0.7887000 36.14 70.0 14 537.29 0.00 100.00 0 100.00 1/1
chr1 247597656 rs3835304 TG T . PASS 0.2579000 0.4207000 0.5248000 0.6491000 0.5828000 0.4762000 36.76 70.0 25 993.21 0.00 100.00 0 100.00 1/1
chr1 247599232 rs10754557 G A . PASS 0.1747000 0.4611000 0.6617000 0.6183000 0.5971000 0.4840000 37.0 70.0 28 1000.00 0.00 100.00 0 100.00 1/1
chr1 247614693 rs6695302 C T . PASS 0.6203000 0.9741000 1.0000000 0.9980000 0.9990000 0.8956000 36.8 70.0 118 1000.00 0.00 100.00 0 100.00 1/1
chr1 247614896 rs11583410 A C . PASS 0.1165000 0.3401000 0.4474000 0.4742000 0.5450000 0.3696000 36.65 70.0 103 1000.00 0.00 100.00 0 100.00 1/1
chr1 247615340 rs55889481 C T . PASS 0.3782000 0.1888000 0.0099000 0.1133000 0.0450000 0.1595000 37.0 70.0 27 53.34 1.85 14.81 0 14.81 0/1
chr1 247654498 rs61070846 G A . PASS 0.1483000 0.2176000 0.0288000 0.1909000 0.0808000 0.1292000 35.78 70.0 92 1000.00 7.76 53.26 0 53.26 0/1
chr1 247695427 rs34220133 C G . PASS 0.0333000 0.0504000 0.0020000 0.1372000 0.1299000 0.0691000 37.0 70.0 103 1000.00 2.73 50.49 0 50.49 0/1
chr1 247695612 rs6657127 G A . PASS 0.9947000 0.9986000 1.0000000 1.0000000 1.0000000 0.9984000 36.51 70.0 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 247695756 rs6697472 T C . PASS 0.9198000 0.9885000 1.0000000 0.9990000 1.0000000 0.9770000 36.31 70.0 87 1000.00 0.00 100.00 0 100.00 1/1
chr1 247726822 rs142922665 CTTTT C . PASS 0.2965000 0.3746000 0.1617000 0.5159000 0.3834000 0.3413000 36.14 70.0 24 413.74 21.43 58.33 0 58.33 0/1
chr1 247751731 rs12737801 C G . PASS 0.0673000 0.0865000 0.0050000 0.1223000 0.1074000 0.0763000 36.51 70.0 95 1000.00 1.12 51.58 0 51.58 0/1
chr1 247752019 rs1151687 G C . PASS 0.1641000 0.6686000 0.7599000 0.7147000 0.7526000 0.5795000 36.54 70.0 79 1000.00 0.00 100.00 0 100.00 1/1
chr1 247752161 rs10925085 T C . PASS 0.0582000 0.3501000 0.5228000 0.4125000 0.2843000 0.3075000 37.0 70.0 54 1000.00 2.94 53.70 0 53.70 0/1
chr1 247752367 rs869111 A G . PASS 0.3116000 0.3444000 0.4444000 0.5159000 0.3364000 0.3888000 36.62 70.0 65 1000.00 4.52 49.23 0 49.23 0/1
chr1 247769592 rs1151683 C T . PASS 0.3048000 0.3689000 0.3413000 0.2217000 0.3333000 0.3099000 36.2 70.0 72 979.91 0.00 41.67 0 41.67 0/1
chr1 247835674 rs28446289 G A . PASS 0.2958000 0.2392000 0.3839000 0.3519000 0.3671000 0.3309000 37.0 70.0 56 1000.00 7.49 55.36 0 55.36 0/1
chr1 247835908 rs28556931 T A . PASS 0.2995000 0.2392000 0.3760000 0.3519000 0.3671000 0.3303000 37.0 70.0 44 749.89 13.64 50.00 0 50.00 0/1
chr1 247835950 rs1151640 T C . PASS 0.1286000 0.5937000 0.6032000 0.4195000 0.4305000 0.4060000 36.48 70.0 50 765.75 1.04 46.00 0 46.00 0/1
chr1 247836008 rs28555391 G A . PASS 0.2965000 0.2392000 0.3760000 0.3519000 0.3661000 0.3293000 36.6 70.0 48 1000.00 2.50 62.50 0 62.50 0/1
chr1 247836207 rs28711149 T A . PASS 0.2965000 0.2392000 0.3760000 0.3519000 0.3671000 0.3295000 37.0 70.0 93 1000.00 2.28 54.84 0 54.84 0/1
chr1 247875608 rs6587382 C G . PASS 0.6067000 0.2118000 0.2232000 0.2316000 0.2321000 0.3263000 36.16 70.0 83 1000.00 3.70 51.81 0 51.81 0/1
chr1 247886949 rs36075193 T C . PASS 0.0053000 0.0476000 0.0010000 0.1272000 0.0204000 0.0377000 36.22 70.0 81 1000.00 2.52 56.79 0 56.79 0/1
chr1 247921100 rs1552812 T G . PASS 0.4523000 0.8775000 0.7659000 0.9115000 0.7894000 0.7324000 36.8 70.0 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 247921352 rs1552813 C T . PASS 0.5825000 0.9236000 0.9851000 0.9573000 0.8793000 0.8440000 37.0 70.0 55 1000.00 0.00 100.00 0 100.00 1/1
chr1 247921717 rs10888359 C A . PASS 0.5862000 0.9236000 0.9851000 0.9592000 0.8804000 0.8456000 36.73 70.0 45 1000.00 0.00 100.00 0 100.00 1/1
chr1 247921789 rs147960387 A AGT . PASS . . . . . . 37.0 70.0 10 250.01 10.00 80.00 0 80.00 0/1
chr1 247978079 rs72777548 T A . PASS 0.2027000 0.0764000 0.0000000 0.0805000 0.0123000 0.0827000 37.0 70.0 21 401.41 4.76 57.14 0 57.14 0/1
chr1 247978087 rs10888248 G A . PASS 0.5000000 0.8977000 1.0000000 0.9165000 0.9847000 0.8341000 37.0 70.0 26 390.51 0.00 46.15 0 46.15 0/1
chr1 247978319 rs6695283 A G . PASS 0.9955000 1.0000000 1.0000000 1.0000000 1.0000000 0.9988000 36.64 70.0 67 1000.00 0.00 100.00 0 100.00 1/1
chr1 247978541 rs375198428,rs35979231 AAGG A . PASS 0.2163000 0.8184000 0.9851000 0.8797000 0.8967000 0.7206000 36.85 70.0 88 1000.00 0.83 46.59 0 46.59 0/1
chr1 247978996 rs10888249 A G . PASS 0.5424000 0.9035000 1.0000000 0.9175000 0.9877000 0.8468000 37.0 70.0 73 1000.00 9.07 61.64 0 64.38 0/1
chr1 248004296 rs6681483 A G . PASS 0.3616000 0.1282000 0.0040000 0.1014000 0.0746000 0.1490000 36.27 70.0 60 1000.00 6.97 55.00 0 55.00 0/1
chr1 248004614 rs6667389 G A . PASS 0.6233000 0.8703000 0.9960000 0.8986000 0.9254000 0.8468000 37.0 70.0 49 530.14 20.17 34.69 0 34.69 0/1
chr1 248004687 rs10888255 C G . PASS 0.7103000 0.8732000 0.9960000 0.8986000 0.9264000 0.8704000 37.0 70.0 69 1000.00 6.76 52.17 0 52.17 0/1
chr1 248004775 rs10888256 C T . PASS 0.7829000 0.8804000 0.9960000 0.8986000 0.9264000 0.8906000 37.0 70.0 51 1000.00 4.46 56.86 0 56.86 0/1
chr1 248004848 rs4607924 G C . PASS 0.7821000 0.8804000 0.9960000 0.8986000 0.9264000 0.8904000 36.5 70.0 49 806.37 6.29 48.98 0 48.98 0/1
chr1 248004877 rs10888257 C T . PASS 0.7126000 0.8732000 0.9960000 0.8986000 0.9264000 0.8710000 36.59 70.0 58 992.29 10.34 50.00 0 50.00 0/1
chr1 248004884 rs1339845 T C . PASS 0.8926000 0.9510000 1.0000000 0.9592000 0.9980000 0.9563000 36.6 70.0 60 1000.00 10.00 50.00 0 50.00 0/1
chr1 248005213 rs7522811 G C . PASS 0.6218000 0.8573000 0.9960000 0.8986000 0.9264000 0.8448000 37.0 70.0 72 707.38 7.85 31.94 0 31.94 0/1
chr1 248020448 rs10749636 G A . PASS 0.3381000 0.7133000 0.7738000 0.7694000 0.8006000 0.6548000 37.0 70.0 16 632.84 0.00 100.00 0 100.00 1/1
chr1 248020526 rs142390236 C A . PASS 0.0204000 0.0389000 0.0000000 0.0447000 0.0020000 0.0202000 36.5 70.0 56 785.30 3.57 42.86 0 42.86 0/1
chr1 248020556 rs11204523 G C . PASS 0.4168000 0.7262000 0.7897000 0.7614000 0.8067000 0.6801000 36.83 70.0 72 1000.00 0.00 100.00 0 100.00 1/1
chr1 248028219 rs946696 G A . PASS 0.0499000 0.4409000 0.5744000 0.5716000 0.5685000 0.4157000 36.08 70.0 86 1000.00 7.27 45.35 0 45.35 0/1
chr1 248039294 rs1339847 G A . PASS 0.0787000 0.2046000 0.1339000 0.0974000 0.1554000 0.1260000 36.25 70.0 106 1000.00 1.49 45.28 0 45.28 0/1
chr1 248039451 rs3811444 C T . PASS 0.0401000 0.2896000 0.2292000 0.3449000 0.3139000 0.2274000 35.91 70.0 65 1000.00 10.72 50.77 0 50.77 0/1
chr1 248039713 rs3811445 A G . PASS 0.5340000 0.7075000 0.5417000 0.5865000 0.6053000 0.5841000 36.58 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 248058797 rs1856248 T G . PASS 0.9092000 0.9424000 0.9405000 0.9801000 0.9959000 0.9513000 36.29 70.0 17 658.45 0.00 100.00 0 100.00 1/1
chr1 248058845 rs4500353 A C . PASS 0.9085000 0.9424000 0.9425000 0.9801000 0.9959000 0.9515000 35.06 70.0 31 1000.00 0.00 100.00 0 100.00 1/1
chr1 248058879 rs6587387 A T . PASS 0.9047000 0.9424000 0.9415000 0.9801000 0.9959000 0.9503000 37.0 70.0 49 1000.00 0.00 100.00 0 100.00 1/1
chr1 248059423 rs10888267 C T . PASS 0.1422000 0.3487000 0.5714000 0.5308000 0.4172000 0.3890000 36.66 70.0 75 1000.00 0.76 46.67 0 46.67 0/1
chr1 248059456 rs12135078 G A . PASS 0.0545000 0.3357000 0.5327000 0.5507000 0.4346000 0.3636000 36.61 70.0 57 1000.00 4.98 54.39 0 54.39 0/1
chr1 248059476 rs12139390 A C . PASS 0.2602000 0.5965000 0.5833000 0.7962000 0.7546000 0.5761000 36.78 70.0 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 248059703 rs11204545 T A . PASS 0.2648000 0.4553000 0.5893000 0.6650000 0.4755000 0.4780000 36.25 69.17 48 1000.00 0.00 100.00 0 100.00 1/1
chr1 248059712 rs11204546 T C . PASS 0.2640000 0.4568000 0.5903000 0.6670000 0.4816000 0.4798000 37.0 69.26 54 1000.00 0.00 100.00 0 100.00 1/1
chr1 248059856 rs10888268 T C . PASS 0.2632000 0.4539000 0.5893000 0.6650000 0.4744000 0.4772000 37.0 70.0 33 1000.00 0.00 100.00 0 100.00 1/1
chr1 248084434 rs11204563 G A . PASS 0.1415000 0.6686000 0.3720000 0.7813000 0.5174000 0.4629000 36.39 59.75 169 1000.00 0.68 92.90 0 92.90 1/1
chr1 248084440 rs111379878 T G . PASS 0.0590000 0.0274000 0.0109000 0.0249000 0.0521000 0.0367000 36.48 52.74 169 403.43 13.22 13.61 0 13.61 0/1
chr1 248084464 rs11204564 T C . PASS . . . . . . 36.61 56.22 204 1000.00 3.59 75.00 0 75.00 0/1
chr1 248084511 rs41315864 T C . PASS . . . . . . 36.8 56.57 225 1000.00 2.67 26.67 0 26.67 0/1
chr1 248084579 rs144850929 G A . PASS 0.2844000 0.0735000 0.2470000 0.0298000 0.0961000 0.1597000 37.0 57.75 102 663.00 3.92 23.53 0 23.53 0/1
chr1 248084609 rs140703773 C T . PASS 0.9539000 0.9942000 1.0000000 1.0000000 1.0000000 0.9870000 37.0 53.1 40 1000.00 0.00 100.00 0 100.00 1/1
chr1 248084625 rs6692365 C G . PASS 0.4622000 0.6816000 0.5357000 0.7644000 0.5358000 0.5825000 37.0 45.23 41 1000.00 6.77 75.61 0 75.61 0/1
chr1 248084627 rs61857490 C T . PASS 0.4622000 0.6859000 0.5357000 0.7644000 0.5358000 0.5831000 36.62 45.97 42 1000.00 6.85 76.19 0 76.19 0/1
chr1 248084629 rs201244365 A T . PASS . . . . . . 37.0 32.4 44 248.65 34.55 22.73 0 22.73 0/1
chr1 248084631 rs28689982 A C . PASS 0.6717000 0.7320000 0.5536000 0.7903000 0.5624000 0.6587000 36.27 45.3 43 1000.00 10.15 76.74 0 76.74 0/1
chr1 248084747 rs4523549 A C . PASS 0.8086000 0.9798000 0.9901000 0.9920000 0.9990000 0.9429000 37.0 51.92 13 503.38 0.00 100.00 0 100.00 1/1
chr1 248084749 rs12142488 C A . PASS 0.8124000 0.9813000 0.9881000 0.9930000 0.9990000 0.9439000 36.08 51.92 13 491.37 0.00 100.00 0 100.00 1/1
chr1 248084798 rs74575364 C T . PASS . . . . . . 35.91 43.5 59 684.88 51.77 37.29 0 37.29 0/1
chr1 248084825 rs61857492 C T . PASS 0.4758000 0.4827000 0.4702000 0.4642000 0.4898000 0.4760000 36.71 52.81 123 1000.00 5.46 34.15 0 34.15 0/1
chr1 248084854 rs4584426 A G . PASS . . . . . . 37.0 47.24 115 498.58 28.16 18.26 0 18.26 0/1
chr1 248084980 rs4362017 G T . PASS 0.1377000 0.5072000 0.3244000 0.5507000 0.3742000 0.3556000 37.0 47.89 37 227.95 35.44 24.32 0 24.32 0/1
chr1 248085108 rs4625315 C T . PASS . . . . . . 36.32 64.87 53 1000.00 0.00 100.00 0 100.00 1/1
chr1 248085341 rs4925773 T A . PASS 0.6747000 0.7248000 0.4474000 0.7883000 0.5072000 0.6260000 37.0 70.0 13 503.38 0.00 100.00 0 100.00 1/1
chr1 248112627 rs4925787 T C . PASS 0.0893000 0.5490000 0.4385000 0.6103000 0.5194000 0.4119000 36.78 67.05 111 1000.00 0.00 100.00 0 100.00 1/1
chr1 248112745 rs4925788 G T . PASS 0.3283000 0.8746000 0.7808000 0.8767000 0.9305000 0.7228000 36.84 64.75 75 1000.00 0.11 97.33 0 97.33 1/1
chr1 248112761 rs34851853 GTG GCA . PASS . . . . . . 36.75 65.26 73 1000.00 1.29 98.63 0 100.00 1/1
chr1 248112771 rs4925791 C T . PASS . . . . . . 35.86 65.36 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 248112809 rs4925583 A G . PASS 0.2753000 0.9251000 0.8829000 0.9513000 0.9540000 0.7560000 36.72 66.16 85 1000.00 0.00 100.00 0 100.00 1/1
chr1 248112836 rs4925792 A G . PASS 0.2965000 0.9265000 0.8849000 0.9503000 0.9540000 0.7620000 36.35 67.96 92 1000.00 0.00 100.00 0 100.00 1/1
chr1 248113026 rs10888281 T A . PASS 0.2867000 0.9135000 0.8532000 0.9453000 0.9315000 0.7458000 35.89 67.53 110 1000.00 0.03 98.18 0 98.18 1/1
chr1 248113040 rs10888282 A G . PASS 0.8359000 0.9784000 0.9603000 0.9930000 0.9683000 0.9381000 37.0 67.54 119 1000.00 0.13 98.32 0 98.32 1/1
chr1 248129240 rs4478844 G A . PASS 0.0915000 0.5706000 0.4623000 0.6531000 0.5317000 0.4313000 36.25 70.0 32 1000.00 0.00 100.00 0 100.00 1/1
chr1 248138577 rs6689666 C A . PASS 0.5530000 0.8963000 0.7956000 0.9453000 0.9847000 0.8125000 36.08 70.0 13 491.37 0.00 100.00 0 100.00 1/1
chr1 248138588 rs6680172 G A . PASS 0.5522000 0.8963000 0.7956000 0.9453000 0.9847000 0.8123000 36.08 70.0 13 495.52 0.00 100.00 0 100.00 1/1
chr1 248138642 rs6694546 A G . PASS 0.5696000 0.8963000 0.7956000 0.9453000 0.9847000 0.8169000 35.8 70.0 10 370.22 0.00 100.00 0 100.00 1/1
chr1 248138848 rs12042554 G C . PASS 0.5688000 0.8963000 0.7956000 0.9453000 0.9847000 0.8167000 36.4 69.85 60 1000.00 0.00 100.00 0 100.00 1/1
chr1 248154347 rs72763231 C T . PASS 0.0008000 0.0000000 0.0000000 0.0010000 0.0000000 0.0003994 36.59 69.81 93 1000.00 0.87 63.44 0 63.44 0/1
chr1 248202289 rs72763251 T C . PASS 0.0008000 0.0058000 0.0000000 0.0080000 0.0000000 0.0025959 36.53 69.9 91 1000.00 6.03 56.04 0 56.04 0/1
chr1 248224569 rs75239130 G T . PASS . . . . . . 37.0 63.86 154 84.64 2.60 9.09 0 9.09 0/1
chr1 248224595 rs76336532 C T . PASS . . . . . . 36.14 63.86 126 161.06 3.17 11.11 0 11.11 0/1
chr1 248224746 rs6697812 G T . PASS 0.0068000 0.0432000 0.0000000 0.0905000 0.0072000 0.0274000 36.42 69.27 103 1000.00 0.00 100.00 0 100.00 1/1
chr1 248247308 rs61856418 A C . PASS . . . . . . 36.85 51.44 385 1000.00 12.42 40.26 0 40.26 0/1
chr1 248247459 . AGG AAC . PASS . . . . . . 36.7 44.56 362 1000.00 34.66 22.38 0 23.20 0/1
chr1 248247586 rs10788754 T G . PASS 0.5408000 0.7522000 0.6558000 0.8221000 0.5838000 0.6581000 36.65 63.47 225 1000.00 11.49 61.78 0 61.78 0/1
chr1 248247588 rs200848234 T A . PASS 0.0182000 0.0778000 0.0843000 0.0974000 0.1472000 0.0809000 36.33 58.96 235 1000.00 20.99 38.30 0 38.30 0/1
chr1 248247590 rs55839802 G A . PASS 0.5061000 0.7291000 0.6548000 0.7962000 0.5521000 0.6342000 36.75 63.32 237 1000.00 11.39 60.76 0 60.76 0/1
chr1 248247592 rs28460545 G C . PASS 0.5061000 0.7176000 0.6508000 0.7773000 0.5511000 0.6278000 36.41 63.33 237 1000.00 8.72 60.34 0 60.34 0/1
chr1 248247621 . C T . PASS . . . . . . 36.67 62.0 350 1000.00 6.62 20.57 0 20.57 0/1
chr1 248247706 rs113076705 G A . PASS . . . . . . 35.41 66.6 363 1000.00 4.96 33.33 0 33.33 0/1
chr1 248263471 rs45577033 G A . PASS 0.0008000 0.0159000 0.0000000 0.0298000 0.0020000 0.0087859 37.0 70.0 90 1000.00 14.55 36.67 0 36.67 0/1
chr1 248343543 rs9435919 C T . PASS 0.6188000 0.6052000 0.4306000 0.6382000 0.5961000 0.5785000 36.02 67.27 219 1000.00 3.16 50.23 0 50.23 0/1
chr1 248343945 rs4244171 C G . PASS 0.6051000 0.6037000 0.4306000 0.6382000 0.5961000 0.5747000 36.72 65.91 134 1000.00 16.80 32.09 0 32.09 0/1
chr1 248343990 rs4916104 T C . PASS 0.6142000 0.6052000 0.4415000 0.6382000 0.5971000 0.5797000 36.28 67.36 172 1000.00 3.82 38.95 0 38.95 0/1
chr1 248366702 rs4916112 G A . PASS 0.3306000 0.5072000 0.4325000 0.6083000 0.5951000 0.4830000 36.71 69.66 163 1000.00 0.37 50.92 0 50.92 0/1
chr1 248367306 rs41304018 T A . PASS 0.0000000 0.0014000 0.0020000 0.0070000 0.0000000 0.0019968 36.19 69.78 99 1000.00 0.17 59.60 0 59.60 0/1
chr1 248402758 rs6666148 C T . PASS 0.4266000 0.7522000 0.7966000 0.7346000 0.9121000 0.7029000 36.56 70.0 48 938.84 0.46 56.25 0 56.25 0/1
chr1 248436456 rs142107755 C A . PASS . . . . . . 36.64 48.67 121 965.59 23.14 27.27 0 27.27 0/1
chr1 248436611 rs10888338 G A . PASS 0.5461000 0.6009000 0.7798000 0.5855000 0.7689000 0.6522000 36.41 61.05 203 1000.00 8.05 40.39 0 40.39 0/1
chr1 248436616 rs71538179 A G . PASS 0.8041000 0.7767000 0.8601000 0.7227000 0.8967000 0.8133000 36.66 61.6 212 1000.00 0.59 99.53 0 99.53 1/1
chr1 248436638 rs200877558 A G . PASS . . . . . . 36.62 52.62 293 1000.00 38.95 21.84 0 21.84 0/1
chr1 248436805 rs28399248 T G . PASS . . . . . . 36.32 54.61 444 1000.00 0.00 100.00 0 100.00 1/1
chr1 248436809 rs61832700 G A . PASS . . . . . . 36.62 48.23 438 1000.00 11.11 43.15 0 43.15 0/1
chr1 248436811 rs61832701 G C . PASS . . . . . . 36.6 47.7 432 1000.00 11.51 42.13 0 42.13 0/1
chr1 248457979 rs6667171 C A . PASS 0.7496000 0.7608000 0.8591000 0.7177000 0.8926000 0.7947000 36.64 69.28 135 1000.00 0.00 100.00 0 100.00 1/1
chr1 248458571 rs12137982 T A . PASS 0.0711000 0.4481000 0.4980000 0.5139000 0.5337000 0.3886000 35.91 66.59 68 1000.00 1.69 97.06 0 97.06 1/1
chr1 248458604 rs143080755 C T . PASS 0.0000000 0.0072000 0.0000000 0.0119000 0.0000000 0.0033946 37.0 65.73 47 452.61 21.56 31.91 0 31.91 0/1
chr1 248458676 rs6678138 T C . PASS . . . . . . 37.0 66.15 61 1000.00 2.19 98.36 0 98.36 1/1
chr1 248458689 rs6674940 A G . PASS . . . . . . 36.65 66.88 70 1000.00 1.70 98.57 0 98.57 1/1
chr1 248458717 rs12745228 C G . PASS . . . . . . 36.86 67.51 83 1000.00 0.00 100.00 0 100.00 1/1
chr1 248458974 rs11204626 T A . PASS 0.8487000 0.7781000 0.8621000 0.7227000 0.8978000 0.8259000 35.91 68.18 11 407.83 0.00 100.00 0 100.00 1/1
chr1 248486895 rs4244184 G T . PASS 0.8578000 0.7709000 0.8621000 0.7137000 0.8967000 0.8253000 36.8 70.0 61 1000.00 0.00 100.00 0 100.00 1/1
chr1 248486913 rs4244185 A G . PASS 0.7693000 0.7651000 0.8621000 0.7147000 0.8967000 0.8013000 36.53 70.0 76 1000.00 0.00 100.00 0 100.00 1/1
chr1 248487300 rs4916129 C T . PASS 0.1377000 0.4539000 0.4940000 0.5159000 0.5337000 0.4065000 36.43 68.95 210 1000.00 0.00 100.00 0 100.00 1/1
chr1 248487338 rs4916130 C A . PASS 0.8661000 0.7709000 0.8621000 0.7137000 0.8967000 0.8275000 36.79 68.86 227 1000.00 0.00 100.00 0 100.00 1/1
chr1 248487638 rs7555310 A G . PASS 0.7700000 0.7651000 0.8601000 0.7117000 0.8967000 0.8005000 36.67 69.2 255 1000.00 0.23 98.43 0 98.43 1/1
chr1 248487768 rs7555424 A G . PASS 0.7693000 0.7651000 0.8621000 0.7137000 0.8957000 0.8009000 36.65 68.93 173 1000.00 0.05 98.84 0 98.84 1/1
chr1 248512064 rs28372410 T G . PASS 0.3752000 0.4885000 0.4315000 0.5239000 0.5419000 0.4647000 37.0 70.0 51 1000.00 0.00 100.00 0 100.00 1/1
chr1 248512094 rs28728105 C T . PASS 0.3744000 0.4885000 0.4315000 0.5239000 0.5409000 0.4643000 36.01 70.0 73 1000.00 0.00 100.00 0 100.00 1/1
chr1 248512498 rs28448343 A G . PASS 0.0923000 0.2594000 0.4276000 0.1938000 0.3538000 0.2544000 36.27 70.0 67 1000.00 7.51 49.25 0 49.25 0/1
chr1 248512637 rs2039824 C T . PASS 0.3601000 0.4885000 0.4315000 0.5239000 0.5409000 0.4605000 36.32 70.0 71 1000.00 0.00 100.00 0 100.00 1/1
chr1 248512749 rs28377739 G A . PASS 0.3601000 0.4885000 0.4315000 0.5239000 0.5409000 0.4605000 36.48 70.0 46 1000.00 0.00 100.00 0 100.00 1/1
chr1 248512767 rs28545014 G T . PASS 0.3608000 0.4885000 0.4315000 0.5249000 0.5409000 0.4609000 35.54 70.0 41 1000.00 0.00 100.00 0 100.00 1/1
chr1 248513023 rs28607995 G A . PASS 0.3608000 0.4885000 0.4325000 0.5239000 0.5409000 0.4609000 36.56 70.0 55 1000.00 0.00 100.00 0 100.00 1/1
chr1 248513088 rs28481429 G C . PASS 0.3608000 0.4885000 0.4315000 0.5239000 0.5409000 0.4607000 36.52 70.0 25 992.61 0.00 100.00 0 100.00 1/1
chr1 248524262 rs1544175 G A . PASS 0.3457000 0.4467000 0.3482000 0.4761000 0.4356000 0.4040000 36.64 70.0 101 1000.00 0.00 100.00 0 100.00 1/1
chr1 248525135 rs76721536 G A . PASS 0.3374000 0.2392000 0.3819000 0.2207000 0.3323000 0.3083000 34.66 60.68 337 569.75 12.96 12.17 0 12.17 0/1
chr1 248525138 rs75096121 C T . PASS 0.3343000 0.2392000 0.3819000 0.2207000 0.3323000 0.3075000 36.37 63.13 329 540.56 13.87 11.55 0 11.55 0/1
chr1 248525638 rs34079073 CA C . PASS 0.3389000 0.4452000 0.3393000 0.4811000 0.4366000 0.4014000 36.34 69.43 158 1000.00 0.00 100.00 0 100.00 1/1
chr1 248550976 rs6587467 T G . PASS 0.8684000 0.7406000 0.7490000 0.6600000 0.8067000 0.7728000 35.47 70.0 86 1000.00 0.00 100.00 0 100.00 1/1
chr1 248569282 rs28667896 A G . PASS 0.0477000 0.3919000 0.3135000 0.4771000 0.4325000 0.3103000 36.43 70.0 42 1000.00 0.00 100.00 0 100.00 1/1
chr1 248569369 rs28599722 A G . PASS 0.0424000 0.4078000 0.3135000 0.5030000 0.4836000 0.3263000 36.84 70.0 74 1000.00 0.00 100.00 0 100.00 1/1
chr1 248570440 rs6695780 G A . PASS 0.8790000 0.8112000 0.8621000 0.7783000 0.9202000 0.8540000 36.43 70.0 21 829.68 0.00 100.00 0 100.00 1/1
chr1 248604365 rs143338137 A G . PASS . . . . . . 34.6 69.0 18 110.19 11.11 27.78 0 27.78 0/1
chr1 248604452 rs78822516 A G . PASS 0.1626000 0.4568000 0.4554000 0.4274000 0.4857000 0.3786000 37.0 67.22 71 129.77 43.51 12.68 0 12.68 0/1
chr1 248604465 rs76925977 C T . PASS . . . . . . 37.0 65.93 76 866.57 5.17 35.53 0 35.53 0/1
chr1 248604542 rs61834485 C T . PASS 0.6740000 0.5850000 0.8641000 0.5447000 0.6656000 0.6723000 36.56 67.24 92 1000.00 10.87 58.70 0 58.70 0/1
chr1 248604559 rs150497047 T TTC . PASS 0.5499000 0.6398000 0.6260000 0.5865000 0.5777000 0.5905000 36.64 48.91 94 1000.00 28.43 35.11 0 35.11 0/1
chr1 248604614 rs201226597 A T . PASS . . . . . . 37.0 57.82 93 142.93 34.80 11.83 0 11.83 0/1
chr1 248604765 rs144165631 T A . PASS 0.6641000 0.6772000 0.7232000 0.5974000 0.6892000 0.6693000 36.57 53.43 65 1000.00 2.03 86.15 0 86.15 0/1
chr1 248605436 rs71642447 C G . PASS 0.2428000 0.4107000 0.2153000 0.4622000 0.3885000 0.3331000 36.17 58.31 64 958.07 2.26 45.31 0 45.31 0/1
chr1 248605442 rs71642448 G T . PASS 0.3192000 0.4323000 0.2123000 0.4692000 0.3834000 0.3560000 35.62 57.46 59 835.79 0.13 44.07 0 44.07 0/1
chr1 248616401 rs77680148 G A . PASS . . . . . . 36.63 27.98 296 1000.00 0.22 32.77 0 32.77 0/1
chr1 248616408 rs73147579 C T . PASS . . . . . . 36.51 27.73 299 1000.00 0.92 32.44 0 32.44 0/1
chr1 248636579 rs1782198 C T . PASS . . . . . . 37.0 59.0 15 298.31 8.89 60.00 0 60.00 0/1
chr1 248637046 rs148025314 G A . PASS . . . . . . 36.08 51.31 94 215.60 2.45 13.83 0 13.83 0/1
chr1 248637065 rs139758663 A G . PASS . . . . . . 37.0 51.13 96 305.16 22.92 15.62 0 15.62 0/1
chr1 248637362 rs77686526 C T . PASS 0.3124000 0.3775000 0.5030000 0.2604000 0.4816000 0.3824000 36.49 65.87 280 1000.00 20.52 16.79 0 16.79 0/1
chr1 248637543 rs139993642 C T . PASS . . . . . . 36.49 62.18 357 1000.00 1.62 26.33 0 26.33 0/1
chr1 248637685 rs201431222 T C . PASS . . . . . . 36.0 55.29 85 690.16 1.67 28.24 0 28.24 0/1
chr1 248637739 rs200378687 G A . PASS . . . . . . 37.0 49.7 32 288.92 0.00 31.25 0 31.25 0/1
chr1 248651927 rs201060805 A G . PASS 0.9803000 0.8401000 0.9970000 0.7614000 0.9611000 0.9165000 36.25 43.03 91 1000.00 9.68 35.16 0 35.16 0/1
chr1 248651959 rs76332972 C T . PASS . . . . . . 36.38 49.36 173 1000.00 2.79 22.54 0 22.54 0/1
chr1 248652011 rs150528589 A T . PASS 0.7307000 0.2147000 0.3542000 0.1889000 0.3057000 0.3916000 36.71 52.43 194 1000.00 5.79 21.65 0 21.65 0/1
chr1 248652023 rs139516854 G A . PASS . . . . . . 36.43 52.38 192 1000.00 3.72 21.88 0 21.88 0/1
chr1 248652058 rs199730299 G A . PASS 0.3427000 0.1182000 0.2381000 0.1014000 0.1861000 0.2115000 36.57 49.75 143 694.68 6.89 19.58 0 19.58 0/1
chr1 248652061 rs200544370 C T . PASS 0.3427000 0.1182000 0.2381000 0.1014000 0.1861000 0.2115000 36.11 49.96 142 566.39 6.87 17.61 0 19.01 0/1
chr1 248652071 rs199723306 G C . PASS 0.7141000 0.2176000 0.3591000 0.1789000 0.3037000 0.3862000 35.8 48.25 120 413.57 5.00 16.67 0 16.67 0/1
chr1 248652175 rs199519459 G A . PASS . . . . . . 36.0 50.33 43 327.34 18.22 27.91 0 27.91 0/1
chr1 248652350 rs200959275 T C . PASS . . . . . . 37.0 50.0 22 68.39 0.00 18.18 0 18.18 0/1
chr1 248652574 rs201387497 G A . PASS . . . . . . 37.0 49.67 10 188.05 0.00 60.00 0 60.00 0/1
chr1 248652596 rs199639744 A C . PASS . . . . . . 37.0 48.83 31 371.31 3.23 38.71 0 38.71 0/1
chr1 248685253 rs9727474 T C . PASS 0.8230000 0.9899000 1.0000000 1.0000000 1.0000000 0.9519000 36.57 70.0 57 1000.00 1.44 98.25 0 98.25 1/1
chr1 248722086 . T G . PASS . . . . . . 37.0 45.43 22 189.56 14.29 31.82 0 31.82 0/1
chr1 248722108 rs201343161 C T . PASS . . . . . . 35.0 45.0 14 164.01 0.00 42.86 0 42.86 0/1
chr1 248722332 . A G . PASS 0.3593000 0.2810000 0.4246000 0.2555000 0.3691000 0.3427000 37.0 53.67 22 151.94 9.09 27.27 0 27.27 0/1
chr1 248722507 rs199706827 C T . PASS . . . . . . 34.82 55.36 32 306.67 15.34 34.38 0 34.38 0/1
chr1 248722611 rs200169450 C G . PASS 0.6467000 0.3833000 0.4544000 0.3171000 0.4254000 0.4621000 36.08 61.08 32 398.06 1.44 40.62 0 40.62 0/1
chr1 248722621 rs201345491 G A . PASS 0.2950000 0.2233000 0.3462000 0.2217000 0.2710000 0.2760000 35.67 57.33 30 241.15 11.11 30.00 0 30.00 0/1
chr1 248722624 rs200919674 C T . PASS 0.3578000 0.2277000 0.3462000 0.2217000 0.2710000 0.2931000 37.0 57.71 28 175.65 14.29 25.00 0 25.00 0/1
chr1 248722659 rs201896684 C T . PASS 0.5545000 0.2795000 0.3849000 0.2535000 0.3211000 0.3762000 37.0 58.5 18 247.51 13.89 44.44 0 44.44 0/1
chr1 248722671 rs140437806 T A . PASS 0.6399000 0.4222000 0.5427000 0.3380000 0.4785000 0.4980000 37.0 56.2 21 317.88 5.71 47.62 0 47.62 0/1
chr1 248722721 . TTG TCA . PASS . . . . . . 36.18 53.55 22 151.94 9.09 27.27 0 100.00 0/1
chr1 248722721 . TTG TCG . PASS . . . . . . 36.18 53.55 22 151.94 3.41 72.73 0 100.00 0/1
chr1 248722777 rs77589892 T A . PASS . . . . . . 36.2 57.0 21 514.72 1.90 71.43 0 71.43 0/1
chr1 248737343 rs61833441 C T . PASS . . . . . . 37.0 63.48 21 841.70 0.00 100.00 0 100.00 1/1
chr1 248737348 rs61833442 G A . PASS 0.5098000 0.2349000 0.2510000 0.2107000 0.3303000 0.3245000 37.0 62.9 21 758.22 2.38 95.24 0 95.24 1/1
chr1 248737595 rs150601708 A G . PASS . . . . . . 37.0 58.36 32 455.99 40.18 43.75 0 43.75 0/1
chr1 248737645 rs143071665 T C . PASS . . . . . . 37.0 61.18 28 342.74 53.25 39.29 0 39.29 0/1
chr1 248737664 rs147489167 C T . PASS . . . . . . 37.0 65.5 15 89.46 80.00 26.67 0 26.67 0/1
chr1 248802249 rs201931676 T TAGA . PASS 0.7088000 0.8919000 0.9315000 0.8956000 0.9284000 0.8594000 35.82 42.06 19 673.49 4.33 89.47 0 100.00 1/1
chr1 248813785 rs200036975 A T . PASS . . . . . . 36.29 47.06 45 526.02 49.15 37.78 0 37.78 0/1
chr1 248813827 rs1782241 T C . PASS . . . . . . 35.29 37.57 57 76.36 55.14 12.28 0 12.28 0/1
chr1 248814052 rs28533004 T A . PASS . . . . . . 36.52 56.08 81 751.82 11.36 30.86 0 30.86 0/1
chr1 248814080 rs1782242 A C . PASS 0.8056000 0.9769000 1.0000000 0.9960000 1.0000000 0.9447000 36.67 53.94 109 1000.00 0.00 100.00 0 100.00 1/1
chr1 248814126 rs28418327 G A . PASS . . . . . . 36.14 63.43 125 1000.00 0.31 44.80 0 44.80 0/1
chr1 248814203 . A G . PASS . . . . . . 37.0 29.0 39 142.53 56.41 17.95 0 17.95 0/1
chr1 248814216 rs202080638 C T . PASS 0.3775000 0.1340000 0.2956000 0.1193000 0.1544000 0.2318000 35.0 29.0 33 106.82 54.55 18.18 0 18.18 0/1
chr1 248844959 rs55871516 T C . PASS 0.1649000 0.0865000 0.1280000 0.1173000 0.1431000 0.1328000 37.0 70.0 49 1000.00 1.41 59.18 0 59.18 0/1
chr1 248845097 rs2000390 C T . PASS 0.4251000 0.8703000 0.8720000 0.8777000 0.8558000 0.7518000 35.71 70.0 60 920.48 23.81 46.67 0 46.67 0/1
chr1 248845356 rs41311583 G T . PASS 0.1649000 0.0951000 0.1280000 0.1113000 0.1370000 0.1316000 36.11 70.0 57 895.60 1.17 47.37 0 47.37 0/1
chr1 248845411 rs11485825 G A . PASS 0.5030000 0.8775000 0.8720000 0.8787000 0.8538000 0.7732000 36.17 70.0 63 965.23 2.96 46.03 0 46.03 0/1
chr1 248845458 rs4509608 C T . PASS 0.3964000 0.8660000 0.8720000 0.8857000 0.8620000 0.7464000 37.0 70.0 47 745.01 2.13 46.81 0 46.81 0/1
chr1 248845471 rs4575113 T C . PASS 0.5507000 0.9539000 1.0000000 0.9960000 0.9990000 0.8740000 36.37 70.0 57 1000.00 0.00 100.00 0 100.00 1/1
chr1 248845499 rs4462184 A G . PASS 0.6679000 0.9669000 1.0000000 0.9970000 1.0000000 0.9071000 36.55 70.0 80 1000.00 0.00 100.00 0 100.00 1/1
chr1 249110906 rs4926508 G C . PASS 0.1104000 0.6427000 0.3224000 0.7078000 0.5184000 0.4265000 36.29 70.0 61 1000.00 12.73 55.74 0 55.74 0/1